Query 032161
Match_columns 146
No_of_seqs 166 out of 1052
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 10:24:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.9 2.9E-20 6.3E-25 153.0 16.0 130 11-141 11-147 (358)
2 TIGR00688 rarD rarD protein. T 99.7 1E-16 2.3E-21 125.3 14.2 127 13-142 2-134 (256)
3 PRK11272 putative DMT superfam 99.7 6.7E-16 1.5E-20 123.3 16.7 124 14-142 9-133 (292)
4 PRK15430 putative chlorampheni 99.7 2E-16 4.3E-21 126.6 13.5 129 11-142 6-137 (296)
5 PF00892 EamA: EamA-like trans 99.7 1.6E-16 3.5E-21 109.8 9.0 119 23-143 1-119 (126)
6 PRK11689 aromatic amino acid e 99.7 2.6E-15 5.6E-20 120.1 13.7 123 12-142 3-129 (295)
7 PRK11453 O-acetylserine/cystei 99.6 3.6E-14 7.9E-19 113.6 15.1 119 14-142 5-124 (299)
8 TIGR00950 2A78 Carboxylate/Ami 99.6 2.2E-14 4.7E-19 111.6 12.4 111 25-142 1-111 (260)
9 TIGR00950 2A78 Carboxylate/Ami 99.6 1.8E-13 3.9E-18 106.5 16.0 131 11-144 126-258 (260)
10 PRK10532 threonine and homoser 99.5 3.1E-12 6.7E-17 102.3 14.8 108 10-123 9-116 (293)
11 TIGR00817 tpt Tpt phosphate/ph 99.4 3.9E-12 8.4E-17 101.8 13.7 112 30-143 19-130 (302)
12 PRK10532 threonine and homoser 99.4 1.7E-11 3.7E-16 98.0 15.7 129 12-144 147-275 (293)
13 PRK11272 putative DMT superfam 99.4 1.3E-11 2.9E-16 98.5 14.9 131 12-144 149-279 (292)
14 COG2510 Predicted membrane pro 99.4 7.1E-12 1.5E-16 89.1 9.8 128 14-143 4-132 (140)
15 PTZ00343 triose or hexose phos 99.3 7.2E-11 1.6E-15 97.0 16.2 115 26-143 62-179 (350)
16 TIGR03340 phn_DUF6 phosphonate 99.3 4.9E-11 1.1E-15 94.7 13.6 124 15-142 3-127 (281)
17 PRK11689 aromatic amino acid e 99.3 1E-10 2.2E-15 93.6 14.7 126 13-144 156-281 (295)
18 PRK11453 O-acetylserine/cystei 99.3 5.5E-10 1.2E-14 89.5 16.5 133 12-144 142-281 (299)
19 PLN00411 nodulin MtN21 family 99.3 3.5E-10 7.6E-15 93.4 15.7 127 14-143 190-321 (358)
20 COG0697 RhaT Permeases of the 99.2 1.7E-09 3.7E-14 84.2 15.4 129 12-142 6-135 (292)
21 TIGR00817 tpt Tpt phosphate/ph 99.2 2.5E-10 5.4E-15 91.3 10.2 132 12-143 144-286 (302)
22 PF13536 EmrE: Multidrug resis 99.1 5.6E-10 1.2E-14 77.6 7.6 96 47-143 2-99 (113)
23 TIGR03340 phn_DUF6 phosphonate 99.0 2.2E-09 4.7E-14 85.3 8.3 131 12-144 143-277 (281)
24 PTZ00343 triose or hexose phos 98.9 1.2E-07 2.6E-12 77.9 15.8 134 10-143 191-341 (350)
25 PRK15430 putative chlorampheni 98.9 7.1E-08 1.5E-12 77.2 13.8 127 16-144 152-279 (296)
26 COG0697 RhaT Permeases of the 98.9 2.1E-07 4.5E-12 72.4 15.6 127 12-143 153-280 (292)
27 PF03151 TPT: Triose-phosphate 98.7 1.1E-06 2.4E-11 63.1 14.3 128 15-143 2-146 (153)
28 TIGR00776 RhaT RhaT L-rhamnose 98.7 8.5E-07 1.8E-11 71.1 14.1 119 15-143 3-129 (290)
29 COG2962 RarD Predicted permeas 98.6 9E-07 2E-11 70.8 12.9 127 12-141 6-135 (293)
30 TIGR00776 RhaT RhaT L-rhamnose 98.6 5E-07 1.1E-11 72.4 10.9 123 12-144 151-282 (290)
31 COG5006 rhtA Threonine/homoser 98.6 1.1E-06 2.4E-11 69.3 11.6 130 12-144 147-276 (292)
32 PF06027 DUF914: Eukaryotic pr 98.4 3.6E-05 7.8E-10 63.3 16.5 130 12-142 9-143 (334)
33 TIGR00688 rarD rarD protein. T 98.3 2.3E-05 5E-10 61.2 13.7 102 16-125 149-255 (256)
34 PRK15051 4-amino-4-deoxy-L-ara 98.0 6.5E-05 1.4E-09 52.3 8.4 63 81-143 40-102 (111)
35 PF06027 DUF914: Eukaryotic pr 98.0 0.0002 4.2E-09 58.9 12.5 131 11-143 166-298 (334)
36 KOG4510 Permease of the drug/m 98.0 1.1E-06 2.5E-11 69.9 -0.6 116 23-143 47-162 (346)
37 PRK02971 4-amino-4-deoxy-L-ara 97.9 0.00034 7.4E-09 50.0 11.4 111 14-143 3-115 (129)
38 COG5006 rhtA Threonine/homoser 97.7 0.0012 2.5E-08 52.5 12.4 113 14-132 13-125 (292)
39 PF08449 UAA: UAA transporter 97.5 0.0042 9.1E-08 49.9 13.3 129 14-143 155-290 (303)
40 PF08449 UAA: UAA transporter 97.5 0.0074 1.6E-07 48.4 14.7 112 28-143 15-129 (303)
41 COG2962 RarD Predicted permeas 97.3 0.016 3.4E-07 46.8 13.5 120 20-143 155-276 (293)
42 KOG4510 Permease of the drug/m 97.0 0.00018 3.8E-09 57.6 0.5 127 13-142 191-317 (346)
43 PF00893 Multi_Drug_Res: Small 96.7 0.01 2.3E-07 39.8 7.2 57 85-141 36-93 (93)
44 PF04142 Nuc_sug_transp: Nucle 96.5 0.018 4E-07 45.3 8.4 70 73-143 13-82 (244)
45 KOG2234 Predicted UDP-galactos 96.5 0.33 7.1E-06 40.2 15.7 129 13-142 15-156 (345)
46 KOG1441 Glucose-6-phosphate/ph 96.2 0.028 6.1E-07 46.0 8.1 103 30-133 34-138 (316)
47 PF06800 Sugar_transport: Suga 96.0 0.21 4.6E-06 40.1 11.7 114 12-133 137-250 (269)
48 KOG1441 Glucose-6-phosphate/ph 96.0 0.015 3.4E-07 47.5 5.3 135 6-142 156-299 (316)
49 KOG3912 Predicted integral mem 95.7 0.27 5.9E-06 40.0 11.1 114 26-143 16-151 (372)
50 PF10639 UPF0546: Uncharacteri 95.3 0.072 1.6E-06 37.3 6.0 105 19-143 2-107 (113)
51 KOG1443 Predicted integral mem 95.1 0.08 1.7E-06 43.3 6.4 71 71-142 77-148 (349)
52 TIGR00803 nst UDP-galactose tr 95.0 0.52 1.1E-05 35.9 10.7 56 89-144 163-218 (222)
53 PF04657 DUF606: Protein of un 95.0 0.89 1.9E-05 32.7 12.3 122 18-142 6-133 (138)
54 KOG2765 Predicted membrane pro 94.8 0.096 2.1E-06 43.9 6.4 51 90-140 171-221 (416)
55 PRK10452 multidrug efflux syst 94.7 0.19 4.2E-06 35.5 6.9 61 83-143 35-96 (120)
56 KOG3912 Predicted integral mem 94.7 1.5 3.4E-05 35.7 12.7 132 11-142 174-326 (372)
57 COG2076 EmrE Membrane transpor 94.6 0.24 5.2E-06 34.3 7.0 59 85-143 37-96 (106)
58 PRK13499 rhamnose-proton sympo 94.5 2.4 5.1E-05 35.3 13.7 132 12-144 173-335 (345)
59 PRK09541 emrE multidrug efflux 94.3 0.25 5.3E-06 34.3 6.6 60 84-143 36-96 (110)
60 PF05653 Mg_trans_NIPA: Magnes 94.2 1.6 3.5E-05 35.3 12.1 111 12-144 6-116 (300)
61 KOG4314 Predicted carbohydrate 93.7 0.1 2.2E-06 40.5 4.0 51 90-140 65-115 (290)
62 KOG1444 Nucleotide-sugar trans 93.7 3.4 7.3E-05 33.9 13.1 122 19-142 14-141 (314)
63 KOG2765 Predicted membrane pro 93.1 0.73 1.6E-05 38.7 8.4 120 12-132 246-372 (416)
64 PRK11431 multidrug efflux syst 92.9 0.6 1.3E-05 32.2 6.5 59 85-143 36-95 (105)
65 PRK13499 rhamnose-proton sympo 92.9 1.5 3.3E-05 36.4 10.0 114 12-129 6-125 (345)
66 COG5070 VRG4 Nucleotide-sugar 91.7 1.6 3.4E-05 34.6 8.2 118 26-144 168-290 (309)
67 PRK10650 multidrug efflux syst 90.9 3.9 8.5E-05 28.3 11.0 59 85-143 42-101 (109)
68 KOG1444 Nucleotide-sugar trans 87.8 5 0.00011 32.9 8.6 134 10-144 154-294 (314)
69 KOG1581 UDP-galactose transpor 81.3 23 0.0005 29.2 9.6 128 13-142 172-305 (327)
70 PF04142 Nuc_sug_transp: Nucle 79.5 28 0.0006 27.3 13.3 121 13-138 114-241 (244)
71 KOG1580 UDP-galactose transpor 75.3 3.9 8.5E-05 32.7 3.5 67 75-142 239-305 (337)
72 KOG2922 Uncharacterized conser 66.3 13 0.00028 30.8 4.7 108 12-141 20-127 (335)
73 PF06800 Sugar_transport: Suga 63.2 30 0.00066 27.8 6.3 55 74-129 42-97 (269)
74 KOG1442 GDP-fucose transporter 61.5 32 0.00069 28.2 6.1 121 12-133 184-310 (347)
75 KOG1582 UDP-galactose transpor 51.3 1.4E+02 0.003 24.6 9.5 120 21-141 198-323 (367)
76 KOG2766 Predicted membrane pro 48.9 19 0.00041 29.2 2.9 91 13-106 166-257 (336)
77 KOG1581 UDP-galactose transpor 48.5 1.6E+02 0.0034 24.4 9.0 98 41-144 50-149 (327)
78 PF11460 DUF3007: Protein of u 47.6 74 0.0016 21.9 5.3 42 84-125 14-55 (104)
79 COG3086 RseC Positive regulato 47.1 81 0.0018 23.1 5.7 39 98-136 68-111 (150)
80 PRK10862 SoxR reducing system 43.1 95 0.002 22.6 5.7 29 98-126 68-96 (154)
81 COG4975 GlcU Putative glucose 38.9 9.1 0.0002 30.7 -0.3 109 14-130 3-112 (288)
82 KOG1443 Predicted integral mem 36.3 2.5E+02 0.0055 23.4 11.6 131 12-142 163-307 (349)
83 KOG2766 Predicted membrane pro 35.7 73 0.0016 26.0 4.3 85 42-132 48-132 (336)
84 COG5070 VRG4 Nucleotide-sugar 34.8 53 0.0012 26.2 3.4 50 96-145 86-135 (309)
85 PF04246 RseC_MucC: Positive r 34.4 1.5E+02 0.0033 20.6 5.5 27 99-125 62-88 (135)
86 PF08802 CytB6-F_Fe-S: Cytochr 34.3 87 0.0019 17.7 3.3 29 70-98 4-32 (39)
87 PF07857 DUF1632: CEO family ( 31.9 1.5E+02 0.0032 23.6 5.6 59 12-72 182-251 (254)
88 COG3238 Uncharacterized protei 30.2 2.2E+02 0.0048 20.8 11.4 108 14-123 6-115 (150)
89 KOG1580 UDP-galactose transpor 26.0 86 0.0019 25.3 3.2 54 90-143 97-150 (337)
90 KOG3817 Uncharacterized conser 25.9 4.2E+02 0.0091 22.6 9.1 85 24-113 200-286 (452)
91 KOG4831 Unnamed protein [Funct 23.9 70 0.0015 22.4 2.1 98 16-129 6-104 (125)
92 PRK10621 hypothetical protein; 22.0 3.8E+02 0.0083 20.8 10.9 75 26-106 31-105 (266)
93 PRK15462 dipeptide/tripeptide 21.9 5.3E+02 0.011 22.4 8.6 18 107-124 310-327 (493)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.85 E-value=2.9e-20 Score=153.03 Aligned_cols=130 Identities=38% Similarity=0.548 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCCCHHHHHHHHHHHHHHHH
Q 032161 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRK-NRPPLTFALLCKVFILSLIGIT 89 (146)
Q Consensus 11 ~~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~-~~~~~~~~~~~~l~~lgl~g~~ 89 (146)
+.++|+.|+..++++++..++.|.+++.|++|..+.++|+.+|++++.|+.+.++|+ +.++.+++++..+.++|++| .
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~ 89 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-S 89 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-H
Confidence 357999999999999999999999999999999999999999999999998765543 23455688999999999999 6
Q ss_pred HHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHH------hhHHHHHHHHHHHHHH
Q 032161 90 LMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIF------RFFFFFIFVVFYFLII 141 (146)
Q Consensus 90 ~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~------l~E~~~~~~~~~~~~~ 141 (146)
.++.+++.|++||+|++++++.+++|++++++++++ ++|+.+...+.+.++-
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~ 147 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILS 147 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHH
Confidence 888899999999999999999999999999999999 5999999999887764
No 2
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.73 E-value=1e-16 Score=125.32 Aligned_cols=127 Identities=11% Similarity=-0.044 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCC-----CCCCCHHH-HHHHHHHHHH
Q 032161 13 VPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKN-----RPPLTFAL-LCKVFILSLI 86 (146)
Q Consensus 13 ~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~-----~~~~~~~~-~~~l~~lgl~ 86 (146)
|++..++++.++||.++++.|. .++ +||.++.++|+++|++++.++...+++++ .++.++++ +......|.+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4788999999999999999998 454 99999999999999988877654333211 11122333 3344555555
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 87 GITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 87 g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
...++.++++|++++++++++++.++.|+++.+++++++|||++...|++.++.+
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~ 134 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIAT 134 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5589999999999999999999999999999999999999999999999877654
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.71 E-value=6.7e-16 Score=123.26 Aligned_cols=124 Identities=14% Similarity=0.104 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 032161 14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQI 93 (146)
Q Consensus 14 ~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~ 93 (146)
-...++...++||.+++.+|...++ +||.+++++|+.+|+++++++... +|+ + +.+++|+......|.++...++.
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~-~~~-~-~~~~~~~~~~~~~g~~~~~~~~~ 84 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGILLLAFLLL-RGH-P-LPTLRQWLNAALIGLLLLAVGNG 84 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHH-hCC-C-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 3456777899999999999998874 999999999999999999887644 222 2 23567888888999998778889
Q ss_pred HHHHHh-hhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 94 CVYTGV-SFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 94 l~~~gl-~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
+++.+. +++++++++++.++.|+++.+++++ +||+++...+.+.++..
T Consensus 85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~ 133 (292)
T PRK11272 85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGL 133 (292)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHH
Confidence 999999 9999999999999999999999986 69999999998877654
No 4
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.71 E-value=2e-16 Score=126.61 Aligned_cols=129 Identities=10% Similarity=-0.100 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC---CCCHHHHHHHHHHHHHH
Q 032161 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRP---PLTFALLCKVFILSLIG 87 (146)
Q Consensus 11 ~~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~---~~~~~~~~~l~~lgl~g 87 (146)
+.++++.++++.++||.+++..|.. + ++||.++.++|..+|.+++.++...+++++.. ..+++++. ....+.++
T Consensus 6 ~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 82 (296)
T PRK15430 6 TRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSAVL 82 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHHHH
Confidence 3589999999999999999999975 5 49999999999999998888776443221110 11344443 34477788
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 88 ITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 88 ~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
...++.++++|++++++++++++.++.|+++.+++++++||+++...|.+.++.+
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~ 137 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAI 137 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999887654
No 5
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.69 E-value=1.6e-16 Score=109.81 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032161 23 CVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFS 102 (146)
Q Consensus 23 ~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~l~~~gl~~t 102 (146)
++||.+.+..|...++ +||....++|+..+++ +.+.....++++.++.+++++......|.++....+.++++|++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4799999999999887 9999999999999997 6666555555433456778899999999998889999999999999
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 103 SPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 103 sas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
++++++.+.++.|+++.++++++++|+++...+.+..+++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~ 119 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIII 119 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764
No 6
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.66 E-value=2.6e-15 Score=120.12 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM 91 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~ 91 (146)
.++++.++.+.++||++++..|..+++ +||..++++|+.+|++++.++. ++++.++ + ..+....+.++...+
T Consensus 3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~~~~~~---~-~~~~~~~~~l~~~~~ 74 (295)
T PRK11689 3 QKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GFPRLRQ---F-PKRYLLAGGLLFVSY 74 (295)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---ccccccc---c-cHHHHHHHhHHHHHH
Confidence 467889999999999999999999886 9999999999999999988752 1211111 1 222345566677788
Q ss_pred HHHHHHHhhh----ccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 92 QICVYTGVSF----SSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 92 ~~l~~~gl~~----tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
+.+++.|+++ +++++++++.++.|+++.+++++++||+++...+.+.++.+
T Consensus 75 ~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~ 129 (295)
T PRK11689 75 EICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLAL 129 (295)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 8888888865 57889999999999999999999999999999999876643
No 7
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.60 E-value=3.6e-14 Score=113.62 Aligned_cols=119 Identities=13% Similarity=0.001 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 032161 14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQI 93 (146)
Q Consensus 14 ~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~ 93 (146)
..+..+++.++||.+++.+|...++ +||..+.++|+.++++.+.++. .+++ .+++ .....|+.+...++.
T Consensus 5 ~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~---~~~~---~~~~---~~~~~g~~~~~~~~~ 74 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV---ARPK---VPLN---LLLGYGLTISFGQFA 74 (299)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh---cCCC---CchH---HHHHHHHHHHHHHHH
Confidence 3467889999999999999999876 9999999999999887766643 1211 2222 345556666667777
Q ss_pred HHHHHhhh-ccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 94 CVYTGVSF-SSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 94 l~~~gl~~-tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
+++.++++ .++++++++.++.|+++.+++++++||+++...+++.++.+
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~ 124 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAI 124 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Confidence 88899998 48899999999999999999999999999999998877654
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.59 E-value=2.2e-14 Score=111.61 Aligned_cols=111 Identities=15% Similarity=0.082 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Q 032161 25 QVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSP 104 (146)
Q Consensus 25 wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~l~~~gl~~tsa 104 (146)
||.+++..|..+++..||.+..+.|+..+.+.+.++... + .+++++......|.++..+++.+++.|++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 899999999998877999999999999998888776432 2 235677788999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 105 TLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 105 s~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
++++++.++.|+++.+++.+++||+++...+.+.++..
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~ 111 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGL 111 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999998887754
No 9
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.57 E-value=1.8e-13 Score=106.47 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHH
Q 032161 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATP--LILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGI 88 (146)
Q Consensus 11 ~~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P--~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~ 88 (146)
+.++....++++++|+.+.+..|+..++ .|| .....+|+.++.+++.|..+..+++ +..+.+++..++.+|.++.
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 202 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIGT 202 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHHH
Confidence 4578899999999999999999998764 664 4555578999999999887653332 2346788888999999999
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 032161 89 TLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILLS 144 (146)
Q Consensus 89 ~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~~ 144 (146)
.+.+.++++++++.++++++.+.++.|+++.++++++++|++....+.+..++...
T Consensus 203 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g 258 (260)
T TIGR00950 203 ALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAA 258 (260)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998764
No 10
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.46 E-value=3.1e-12 Score=102.27 Aligned_cols=108 Identities=11% Similarity=0.034 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 032161 10 VGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGIT 89 (146)
Q Consensus 10 ~~~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~ 89 (146)
++.++...+++++++|+.+.+.+|.+.++ +||..+.++|+.+|++++.++.. +++ ++.++|++......|.+. .
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~--~~~--~~~~~~~~~~~~~~g~~~-~ 82 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFK--PWR--LRFAKEQRLPLLFYGVSL-G 82 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHh--HHh--ccCCHHHHHHHHHHHHHH-H
Confidence 45688999999999999999999999987 99999999999999998887642 222 134568888888888775 4
Q ss_pred HHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHH
Q 032161 90 LMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAV 123 (146)
Q Consensus 90 ~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~ 123 (146)
..+.++++++++++++.++++..+.|+++.+++.
T Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~ 116 (293)
T PRK10532 83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS 116 (293)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 6678899999999999999999999999998873
No 11
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.43 E-value=3.9e-12 Score=101.79 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=94.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 032161 30 TLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLVSA 109 (146)
Q Consensus 30 v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~l~~~gl~~tsas~asi 109 (146)
+.-|+++++--+|..+++.|+.++.+.+.+. +..+.+++++.+++|+..++..|+++ +.++.+.+.|++|++++++++
T Consensus 19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~l 96 (302)
T TIGR00817 19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTHT 96 (302)
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHH
Confidence 4679998764679999999999998776554 21122233456789999999999997 688899999999999999999
Q ss_pred HHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 110 TNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 110 i~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
+.++.|+++.+++++++||+++...+.+.++...
T Consensus 97 i~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~ 130 (302)
T TIGR00817 97 IKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVG 130 (302)
T ss_pred HHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999998887653
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.40 E-value=1.7e-11 Score=98.01 Aligned_cols=129 Identities=13% Similarity=0.115 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM 91 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~ 91 (146)
..+.+..++++++|+.+.+..|+..++ .+|..... ...++++.+.|+...... ....++..+...+.+|++++.+.
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~ 222 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAE-HGPATVAI-GSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALP 222 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHH-HHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999998654 88888754 456667777777654322 12245556666789999999999
Q ss_pred HHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 032161 92 QICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILLS 144 (146)
Q Consensus 92 ~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~~ 144 (146)
+.+|++++++.+|++++.+.++.|+++.++++++++|++....+.+..+++.+
T Consensus 223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~ 275 (293)
T PRK10532 223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAA 275 (293)
T ss_pred HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988753
No 13
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.40 E-value=1.3e-11 Score=98.50 Aligned_cols=131 Identities=11% Similarity=-0.003 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM 91 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~ 91 (146)
..+.+..++++++|+.+.+..|+..+ -++....+++..+++..+.++....+.......+.++|..+.++|++++.+.
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999998643 3456677899999988888876543322111235678989999999999999
Q ss_pred HHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 032161 92 QICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILLS 144 (146)
Q Consensus 92 ~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~~ 144 (146)
+.+|++++++.++++++.+.++.|++++++++++++|+++...+.+..+++.+
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~g 279 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFA 279 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888653
No 14
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.37 E-value=7.1e-12 Score=89.09 Aligned_cols=128 Identities=9% Similarity=0.054 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 032161 14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRP-PLTFALLCKVFILSLIGITLMQ 92 (146)
Q Consensus 14 ~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~-~~~~~~~~~l~~lgl~g~~~~~ 92 (146)
..+..++++++||...++.|+.+++ +||...++.|-.+...++..+.+..++.+.+ ..++|.|..+.+-|+-+. ..-
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~g-lsw 81 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGG-LSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHH-HHH
Confidence 4577889999999999999999975 9999999999999988888877664443332 357888988888887665 666
Q ss_pred HHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 93 ICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 93 ~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
.+||.+++.-.++...-+..+.|+++.++++++++|+.+..-|.+.++|..
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~ 132 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVI 132 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999864
No 15
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.34 E-value=7.2e-11 Score=96.95 Aligned_cols=115 Identities=15% Similarity=0.166 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032161 26 VGITTLSKAAISQGAT-PLILAVYADAIASLILLPLSFFLNRKNRPPL--TFALLCKVFILSLIGITLMQICVYTGVSFS 102 (146)
Q Consensus 26 g~~~v~~K~~l~~g~~-P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~--~~~~~~~l~~lgl~g~~~~~~l~~~gl~~t 102 (146)
..+....|.++++ +| |.+++.+|++++.++...+. ..+.++.|+. .++++..++.+|+++...+ ...+.|++++
T Consensus 62 ~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~-~~~~~sl~~~ 138 (350)
T PTZ00343 62 VLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYW-ATGFRKIPRIKSLKLFLKNFLPQGLCHLFVH-FGAVISMGLG 138 (350)
T ss_pred HHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhc
Confidence 3445678999887 99 99999999999987655442 2222222333 2457889999999998765 4467999999
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 103 SPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 103 sas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
+++.++++.++.|++++++++++++|+.+...+.+.+++..
T Consensus 139 svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~ 179 (350)
T PTZ00343 139 AVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVG 179 (350)
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888754
No 16
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.32 E-value=4.9e-11 Score=94.70 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhh-cCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 032161 15 YAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLN-RKNRPPLTFALLCKVFILSLIGITLMQI 93 (146)
Q Consensus 15 ~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~-~~~~~~~~~~~~~~l~~lgl~g~~~~~~ 93 (146)
....+.++++|+...+.+|...++ -++. ..++...+++++.|+...+. ++++++.+ +++......+.++...++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLP-ATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcc-hhhHHHHHHHHHHHHHHHH
Confidence 456778999999999999976654 3443 57788888888888765432 22222233 4445566667777789999
Q ss_pred HHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 94 CVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 94 l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
++++|++++++++++.+.++.|+++.+++++++||+++...|.+..++.
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~ 127 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIIT 127 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988764
No 17
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.31 E-value=1e-10 Score=93.64 Aligned_cols=126 Identities=10% Similarity=0.113 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032161 13 VPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQ 92 (146)
Q Consensus 13 ~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~ 92 (146)
.+.+..++++++|+.+.+..|+..+ +.||.... +..+++.+.+.....+ ......+.+.|..+++.|+ ...+.+
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~t~~~~ 229 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLF---FILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAA-AMGFGY 229 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHH---HHHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHH-HHHHHH
Confidence 4778999999999999999999765 48887653 2334444444333322 1112355677888887774 567889
Q ss_pred HHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 032161 93 ICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILLS 144 (146)
Q Consensus 93 ~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~~ 144 (146)
.+|++++++.+|++++.+.++.|+++.++++++++|+++...+.+.++|+.+
T Consensus 230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~g 281 (295)
T PRK11689 230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAG 281 (295)
T ss_pred HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998764
No 18
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.26 E-value=5.5e-10 Score=89.47 Aligned_cols=133 Identities=11% Similarity=0.083 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHhhhhcCC-----CCCCCHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQG--ATPLILAVYADAIASLILLPLSFFLNRKN-----RPPLTFALLCKVFILS 84 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g--~~P~~l~~~R~~iA~l~l~~~~~~~~~~~-----~~~~~~~~~~~l~~lg 84 (146)
..+.+..+.++++|+.+.+..|...++. .+......+....+.+.+....+..+... ....+.++|..++++|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 3577889999999999999999875431 22234445555555444433333222211 1234678899999999
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 032161 85 LIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILLS 144 (146)
Q Consensus 85 l~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~~ 144 (146)
++++.+.+.++++++++.+|++++.+.++.|++..++++++++|+++...+.+..+++.+
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~g 281 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAG 281 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888753
No 19
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.26 E-value=3.5e-10 Score=93.37 Aligned_cols=127 Identities=11% Similarity=0.115 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHhhhhcCCC----CCCCHHHHHHHHHHHHHHH
Q 032161 14 PYAAMVAVQCVQVGITTLSKAAISQGATP-LILAVYADAIASLILLPLSFFLNRKNR----PPLTFALLCKVFILSLIGI 88 (146)
Q Consensus 14 ~~l~ll~~~~~wg~~~v~~K~~l~~g~~P-~~l~~~R~~iA~l~l~~~~~~~~~~~~----~~~~~~~~~~l~~lgl~g~ 88 (146)
+...++.++++|+.+.+..|...++ .|| ...+++...++++.+.+.....++... ...+.. ...+++.|+. .
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-t 266 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-T 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-H
Confidence 5577888999999999999998765 655 466778877777666655554333211 112222 3335566655 4
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 89 TLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 89 ~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
.+.+.++++++++.+|+.++.+.++.|++++++++++++|+++...+++.++|+.
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~ 321 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITL 321 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999999999998875
No 20
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.18 E-value=1.7e-09 Score=84.15 Aligned_cols=129 Identities=22% Similarity=0.242 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM 91 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~ 91 (146)
.......++..+.|+.+....|...++..++......|+..+.....+... +++...+...+++....+.+.++...+
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL--LEPRGLRPALRPWLLLLLLALLGLALP 83 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH--hhcccccccccchHHHHHHHHHHHHHH
Confidence 356778888889999999999998765366677777799999887444322 211111122233556778888888899
Q ss_pred HHHHHHHhhhccHHHHHHHHhhHHHHHHHHHH-HHhhHHHHHHHHHHHHHHH
Q 032161 92 QICVYTGVSFSSPTLVSATNNLIPAFTFLLAV-IFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 92 ~~l~~~gl~~tsas~asii~~l~Pv~t~lla~-l~l~E~~~~~~~~~~~~~~ 142 (146)
+.+++.+++++++++++.+.++.|+++.+++. ++++|++....+.+.++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 135 (292)
T COG0697 84 FLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLAL 135 (292)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999997 7779999999999866543
No 21
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.16 E-value=2.5e-10 Score=91.32 Aligned_cols=132 Identities=14% Similarity=0.102 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCC---------CHHH-HHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQ-GATPLILAVYADAIASLILLPLSFFLNRKNRPPL---------TFAL-LCKV 80 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~-g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~---------~~~~-~~~l 80 (146)
..+.+..++++++|+.+.+..|+..++ ++||.++..+....+++.+.|+.+..+....... +... +...
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 457888999999999999999998751 4999999999999999999998765432111000 0001 1112
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 81 FILSLIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 81 ~~lgl~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
+..+......++.+++.++++++|+++++..++.|++++++++++++|+++...+++..+++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~ 286 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIA 286 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHH
Confidence 233332333455677789999999999999999999999999999999999999999999875
No 22
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.08 E-value=5.6e-10 Score=77.61 Aligned_cols=96 Identities=22% Similarity=0.266 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHH
Q 032161 47 VYADAIASLILLPLSFFLNRKNR--PPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVI 124 (146)
Q Consensus 47 ~~R~~iA~l~l~~~~~~~~~~~~--~~~~~~~~~~l~~lgl~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l 124 (146)
.+|...+.+++..+....+|.+. +..+++++.+....|.++...++.++++|+++++ +..+.+.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 68999999988887766333211 1223456677777888888889999999999999 58889999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHh
Q 032161 125 FRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 125 ~l~E~~~~~~~~~~~~~~~ 143 (146)
++||++....+.+..++..
T Consensus 81 ~~~er~~~~~~~a~~l~~~ 99 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILI 99 (113)
T ss_pred HhcCCCCHHHHHHHHHHHH
Confidence 9999999999999887753
No 23
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.98 E-value=2.2e-09 Score=85.25 Aligned_cols=131 Identities=15% Similarity=-0.014 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLI----LAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIG 87 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~----l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g 87 (146)
.++....++++++|+.+.+..|...+ +.+|.. ...+.....++.+.+.....++ +....+.+++......+.++
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 220 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHG-RSMFPYARQILPSATLGGLM 220 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhc-cchhhhHHHHHHHHHHHHHH
Confidence 34566788899999999999997643 255432 3333433332222222211121 11111223445567788888
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 032161 88 ITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILLS 144 (146)
Q Consensus 88 ~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~~ 144 (146)
..+.+.++++++++.++++++...++.|+++.++++++++|+++...+.+..+++..
T Consensus 221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~G 277 (281)
T TIGR03340 221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAG 277 (281)
T ss_pred HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 888999999999999999999999999999999999999999999999999988753
No 24
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.89 E-value=1.2e-07 Score=77.91 Aligned_cols=134 Identities=14% Similarity=0.104 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC--------CCCHH
Q 032161 10 VGLVPYAAMVAVQCVQVGITTLSKAAISQ------GATPLILAVYADAIASLILLPLSFFLNRKNRP--------PLTFA 75 (146)
Q Consensus 10 ~~~~~~l~ll~~~~~wg~~~v~~K~~l~~------g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~--------~~~~~ 75 (146)
.+..+.+..++++++|+...+..|..+++ .+++..+..+...+++++++|+....+..+.. ..+..
T Consensus 191 ~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~ 270 (350)
T PTZ00343 191 FTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNY 270 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccccc
Confidence 34568889999999999999999998764 26687777777889999999987644321100 00011
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 76 LLCKVF---ILSLIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 76 ~~~~l~---~lgl~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
.+..+. +.+.+...+++...+.++++++|.++++..++-|+++.++++++++|+++...+.|..+++.
T Consensus 271 ~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~ 341 (350)
T PTZ00343 271 TKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAIL 341 (350)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHH
Confidence 111222 22222233333344469999999999999999999999999999999999999999988865
No 25
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.89 E-value=7.1e-08 Score=77.21 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 032161 16 AAMVAVQCVQVGITTLSKAAISQG-ATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQIC 94 (146)
Q Consensus 16 l~ll~~~~~wg~~~v~~K~~l~~g-~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~l 94 (146)
...++++++|+.+.+..|...++. .++.....+...++.....+.... ........+...+..+...|+ ...+.+.+
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~ 229 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGI-VTTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHH-HHHHHHHH
Confidence 356778899999999999864321 233444455555554443332110 000011112233344444555 45588899
Q ss_pred HHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 032161 95 VYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILLS 144 (146)
Q Consensus 95 ~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~~ 144 (146)
+++++++.+|+.++.+.++.|++..++++++++|+++...+.+..+|+.+
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~ 279 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVA 279 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888543
No 26
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.87 E-value=2.1e-07 Score=72.36 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAV-YADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITL 90 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~-~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~ 90 (146)
..+....+.+.++|+.+.+..|... + .++..... +....+.....+.. ..... ...+.+++......|+++...
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~i 227 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTGL 227 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999876 4 77877777 55553333333332 12111 235668899999999999888
Q ss_pred HHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 91 MQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 91 ~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
.+.++++++++.+++..+.+..+.|++..++++++++|+++..-+.+..++..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~ 280 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVL 280 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877654
No 27
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.72 E-value=1.1e-06 Score=63.11 Aligned_cols=128 Identities=21% Similarity=0.305 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC----CC-------CHHHH
Q 032161 15 YAAMVAVQCVQVGITTLSKAAISQ------GATPLILAVYADAIASLILLPLSFFLNRKNRP----PL-------TFALL 77 (146)
Q Consensus 15 ~l~ll~~~~~wg~~~v~~K~~l~~------g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~----~~-------~~~~~ 77 (146)
.+..+.+.++-+...+..|..+++ +.||.++..+-...+++++.|..+..++.+.. .. +.+.+
T Consensus 2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 81 (153)
T PF03151_consen 2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFI 81 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHH
Confidence 466788999999999999998866 79999999999999999999988776654310 00 22334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 78 CKVFILSLIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 78 ~~l~~lgl~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
..++..|+++. .++...+.-++++||...++..+.-.+.+.++++++.+|+++...+.++++.+.
T Consensus 82 ~~~~~~~~~~~-~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~ 146 (153)
T PF03151_consen 82 FLLILSGLLAF-LYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALV 146 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHH
Confidence 44555566654 888899999999999999999999999999999999999999999999998765
No 28
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.69 E-value=8.5e-07 Score=71.12 Aligned_cols=119 Identities=12% Similarity=0.084 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHH---HHHH
Q 032161 15 YAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIG---ITLM 91 (146)
Q Consensus 15 ~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g---~~~~ 91 (146)
.+..++++++||.+.+..|..- |.+|.+.. |..++.+++..+....++ ++.+ .......|+++ -...
T Consensus 3 ~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~---~~~~---~~~~~~~g~l~G~~w~ig 72 (290)
T TIGR00776 3 ILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVL---PEFW---ALSIFLVGLLSGAFWALG 72 (290)
T ss_pred hHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhC---Cccc---ccHHHHHHHHHHHHHHhh
Confidence 5778889999999999999864 68888776 888888776665444222 1122 12334444444 4566
Q ss_pred HHHHHHHhhhccHHHHHHHHh-hHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHh
Q 032161 92 QICVYTGVSFSSPTLVSATNN-LIPAFTFLLAVIFRFFFFFIFV----VFYFLIILL 143 (146)
Q Consensus 92 ~~l~~~gl~~tsas~asii~~-l~Pv~t~lla~l~l~E~~~~~~----~~~~~~~~~ 143 (146)
|.+++.+.++++.+.+-.+.+ +.|++..+.+.+++||+..... ..+.++++.
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~ 129 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIII 129 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 799999999999999998887 8999999999999999988777 666666654
No 29
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.65 E-value=9e-07 Score=70.83 Aligned_cols=127 Identities=12% Similarity=-0.072 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC---CCCCHHHHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNR---PPLTFALLCKVFILSLIGI 88 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~---~~~~~~~~~~l~~lgl~g~ 88 (146)
.++.+..+.+-++||..+...|.. ++ .|+.++.+.|.+-+...+.......++.+. ...++|.+....+.+.. .
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-I 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-H
Confidence 478999999999999999999975 55 999999999999998777766554333221 12344556655555555 4
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032161 89 TLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLII 141 (146)
Q Consensus 89 ~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~ 141 (146)
+++-..|.++.+.-..-++|+=...+|++.++++.+++||+++..-|....+-
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA 135 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLA 135 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 47888999999999999999999999999999999999999999888776553
No 30
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.62 E-value=5e-07 Score=72.43 Aligned_cols=123 Identities=9% Similarity=-0.045 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADA----IASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIG 87 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~----iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g 87 (146)
.++....+++.+.|+.+.+..|.. + .||.+.++.+.. .+.++..+. + +.+|..+...+ ..+..|++
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~----~-~~~~~~~~~~~-~~~~~Gi~- 220 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGIIFNLGH----I-LAKPLKKYAIL-LNILPGLM- 220 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHHHHHHH----h-cccchHHHHHH-HHHHHHHH-
Confidence 578899999999999999999975 3 899998666554 444443332 1 11222223333 34448888
Q ss_pred HHHHHHHHHHHhh-hccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHhc
Q 032161 88 ITLMQICVYTGVS-FSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVV----FYFLIILLS 144 (146)
Q Consensus 88 ~~~~~~l~~~gl~-~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~----~~~~~~~~~ 144 (146)
....+.+|+.|.+ +.+++.++.+.+..|+...+.+++++||+....-+ .+.++|+.+
T Consensus 221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~ 282 (290)
T TIGR00776 221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIA 282 (290)
T ss_pred HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHH
Confidence 5788899999999 99999999999999999999999999999988777 888777653
No 31
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.58 E-value=1.1e-06 Score=69.30 Aligned_cols=130 Identities=14% Similarity=0.043 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM 91 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~ 91 (146)
..+....+.+..||+.|-+.+|.+-+. -|--+-+..-+.+|+++.+|+..-+.... -.+++-...-+..|++.+.+.
T Consensus 147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlSSalP 223 (292)
T COG5006 147 PVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLSSALP 223 (292)
T ss_pred HHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHhcccc
Confidence 356778889999999999999998644 56667778889999999999976432221 245555666678999999999
Q ss_pred HHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 032161 92 QICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILLS 144 (146)
Q Consensus 92 ~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~~ 144 (146)
+.+...++++.++..-+++.++-|.+.++.++++++|..+.--|..+..+...
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaA 276 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAA 276 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887643
No 32
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.40 E-value=3.6e-05 Score=63.27 Aligned_cols=130 Identities=18% Similarity=0.224 Sum_probs=89.2
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCCCHHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQ---CVQVGITTLSKAAISQGAT-PLILAVYADAIASLILLPLSFFLNRK-NRPPLTFALLCKVFILSLI 86 (146)
Q Consensus 12 ~~~~l~ll~~~---~~wg~~~v~~K~~l~~g~~-P~~l~~~R~~iA~l~l~~~~~~~~~~-~~~~~~~~~~~~l~~lgl~ 86 (146)
++-...+++.+ ++-.++.+......++|.+ |..-.++-...=.++..+...+++++ +..+..+++|.+.+++|++
T Consensus 9 ~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~ 88 (334)
T PF06027_consen 9 RRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALL 88 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHH
Confidence 33444444433 4556666666666555655 44444444433333444443333322 2223335677788889998
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 87 GITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 87 g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
-+ ..+.+.+.|.+||+.+.+.++..+.-.++++++++++|||.+...+.+.++.+
T Consensus 89 Dv-~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i 143 (334)
T PF06027_consen 89 DV-EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICI 143 (334)
T ss_pred HH-HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 77 66688899999999999999999999999999999999999999999887764
No 33
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.34 E-value=2.3e-05 Score=61.19 Aligned_cols=102 Identities=11% Similarity=0.087 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh----hhhcCCCCC-CCHHHHHHHHHHHHHHHHH
Q 032161 16 AAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSF----FLNRKNRPP-LTFALLCKVFILSLIGITL 90 (146)
Q Consensus 16 l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~----~~~~~~~~~-~~~~~~~~l~~lgl~g~~~ 90 (146)
...+.++++|+.+.+..|...++ |+....... ....|... .......+. ...++|..++.+|++ +..
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i 220 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALKNT--DLAGFCLET-----LSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGT 220 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCC--CcchHHHHH-----HHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHH
Confidence 34677899999999999986432 333222222 22222221 111110111 123588888999987 568
Q ss_pred HHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHH
Q 032161 91 MQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIF 125 (146)
Q Consensus 91 ~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~ 125 (146)
.+.++++|+++.+|+.++.+.++.|+++.+++.+.
T Consensus 221 ~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 221 PLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999764
No 34
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.98 E-value=6.5e-05 Score=52.32 Aligned_cols=63 Identities=13% Similarity=-0.110 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 81 FILSLIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 81 ~~lgl~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
...++.+....+.++..++++.+.+.+..+.++.|+.+.+.++++++|+++...+.+..+|..
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~ 102 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIG 102 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 344557777899999999999999999999999999999999999999999999999988763
No 35
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.98 E-value=0.0002 Score=58.95 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCC--HHHHHHHHHHHHHHH
Q 032161 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLT--FALLCKVFILSLIGI 88 (146)
Q Consensus 11 ~~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~--~~~~~~l~~lgl~g~ 88 (146)
..++.+.++.++++||.+.+..++..++ .|+.+....=-+.+.++..+.....++++..+.+ .+....+ ....++.
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~-v~~~~~l 243 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLL-VGYALCL 243 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHH-HHHHHHH
Confidence 3578899999999999999999999886 7888877666667777777666555665543333 3333222 2222344
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 89 TLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 89 ~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
...+.+....+++++|+...+=.-+....+.++++++.+|+++..-..+|.+|..
T Consensus 244 f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIii 298 (334)
T PF06027_consen 244 FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIII 298 (334)
T ss_pred HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 5566677888999999877776678899999999999999999988888888764
No 36
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.98 E-value=1.1e-06 Score=69.93 Aligned_cols=116 Identities=20% Similarity=0.207 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032161 23 CVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFS 102 (146)
Q Consensus 23 ~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~l~~~gl~~t 102 (146)
..+..+.+..+..++ .||.+....|++.--++-.|-....+..-.-+...|.| +++=|+.|.++. ...|++++|.
T Consensus 47 ~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~--LiLRg~mG~tgv-mlmyya~~~m 121 (346)
T KOG4510|consen 47 YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKW--LILRGFMGFTGV-MLMYYALMYM 121 (346)
T ss_pred HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEE--EEeehhhhhhHH-HHHHHHHhhc
Confidence 555555565555554 69999999997666555555443322211111122323 333344444333 4456999999
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 103 SPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 103 sas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
+-++|++|+...|++|.++|++++||+.+.+-.++.++-++
T Consensus 122 slaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~ 162 (346)
T KOG4510|consen 122 SLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLL 162 (346)
T ss_pred chhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhh
Confidence 99999999999999999999999999999999998877654
No 37
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.92 E-value=0.00034 Score=50.05 Aligned_cols=111 Identities=17% Similarity=0.071 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 032161 14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQI 93 (146)
Q Consensus 14 ~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~ 93 (146)
+++.++...++=+..-+.-|+..++ .++.+.... . . ..... . .+ -...+++|+.+..+.+.
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~------~~~~~-~------~~---p~~~i~lgl~~~~la~~ 63 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-I------AALLA-F------GL---ALRAVLLGLAGYALSML 63 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-H------HHHHH-H------hc---cHHHHHHHHHHHHHHHH
Confidence 5777888888888888899998865 443332221 1 0 10000 0 01 11257888899999999
Q ss_pred HHHHHhhhccHHHHHHHHhhHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHh
Q 032161 94 CVYTGVSFSSPTLVSATNNLIPAFTFLLAVI--FRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 94 l~~~gl~~tsas~asii~~l~Pv~t~lla~l--~l~E~~~~~~~~~~~~~~~ 143 (146)
+++.++++.+++.+.-+.+..|+.+.+.++. +++|+++...+++..+|..
T Consensus 64 ~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~ 115 (129)
T PRK02971 64 CWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIML 115 (129)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999888885 8999999999999998864
No 38
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.73 E-value=0.0012 Score=52.49 Aligned_cols=113 Identities=18% Similarity=0.085 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 032161 14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQI 93 (146)
Q Consensus 14 ~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~ 93 (146)
+++.+..+++.-=...-+.|..... +.|...+++|..++++++.++. +.+ +.|.+++|+..+...|..-. ..|.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~--RPw--r~r~~~~~~~~~~~yGvsLg-~MNl 86 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF--RPW--RRRLSKPQRLALLAYGVSLG-GMNL 86 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh--hHH--HhccChhhhHHHHHHHHHHH-HHHH
Confidence 5777777666555556677888887 9999999999999999998863 222 34577889999999888755 4567
Q ss_pred HHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHH
Q 032161 94 CVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFI 132 (146)
Q Consensus 94 l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~ 132 (146)
+||.++++.+=+.+..+-.+-|+.+..++.==.++.+-+
T Consensus 87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~sRr~~d~vwv 125 (292)
T COG5006 87 LFYLSIERIPLGIAVAIEFTGPLAVALLSSRRLRDFVWV 125 (292)
T ss_pred HHHHHHHhccchhhhhhhhccHHHHHHHhccchhhHHHH
Confidence 888999999999999999999999988876555554333
No 39
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.52 E-value=0.0042 Score=49.89 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHhh--hhc-CCC---CCCCHHHHHHHHHHHHH
Q 032161 14 PYAAMVAVQCVQVGITTLSKAAIS-QGATPLILAVYADAIASLILLPLSFF--LNR-KNR---PPLTFALLCKVFILSLI 86 (146)
Q Consensus 14 ~~l~ll~~~~~wg~~~v~~K~~l~-~g~~P~~l~~~R~~iA~l~l~~~~~~--~~~-~~~---~~~~~~~~~~l~~lgl~ 86 (146)
+.+.++++.++-|...+..++..+ ++.+|.+..++-.+.+.+...+.... .+. ++. ...+++.+..++..++.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 788999999999999999999884 46999999999999998877776654 111 111 01123345555666666
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 87 GITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 87 g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
+. ..+.+.+.-.+..+|...+++.++--.++.++++++.+++++..-|.++++...
T Consensus 235 ~~-~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~ 290 (303)
T PF08449_consen 235 GA-LGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFA 290 (303)
T ss_pred HH-HHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHH
Confidence 65 555566678999999999999999999999999999999999999999998764
No 40
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.51 E-value=0.0074 Score=48.44 Aligned_cols=112 Identities=17% Similarity=0.106 Sum_probs=83.0
Q ss_pred HHHHHHHHHh-CCCC--HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Q 032161 28 ITTLSKAAIS-QGAT--PLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSP 104 (146)
Q Consensus 28 ~~v~~K~~l~-~g~~--P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~l~~~gl~~tsa 104 (146)
+.+....... ++-+ |..+++.++....+.-.+.....++++. +++.+......+++- .+...+-+.+++|.+.
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~ 90 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS---RKIPLKKYAILSFLF-FLASVLSNAALKYISY 90 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC---CcChHHHHHHHHHHH-HHHHHHHHHHHHhCCh
Confidence 3344444443 3345 8999999999988776665433221222 223344556666554 3677888999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 105 TLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 105 s~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
..-.++-+..|+.+++++.+++|++.....+++.+++..
T Consensus 91 p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~ 129 (303)
T PF08449_consen 91 PTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITI 129 (303)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988764
No 41
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.26 E-value=0.016 Score=46.77 Aligned_cols=120 Identities=16% Similarity=0.058 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 032161 20 AVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKN--RPPLTFALLCKVFILSLIGITLMQICVYT 97 (146)
Q Consensus 20 ~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~--~~~~~~~~~~~l~~lgl~g~~~~~~l~~~ 97 (146)
..++-||.++..=|.. ++|+.+=...-.+.-...-+.+.++.+... ...-+.+++..+...|... ++.-.+|..
T Consensus 155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf~~ 230 (293)
T COG2962 155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLFAA 230 (293)
T ss_pred HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHHHH
Confidence 3455677777777763 367766555444443332222222222211 1112456777777788775 589999999
Q ss_pred HhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 98 GVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 98 gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
|-++.+=+.-+++++..|.+..++++++++|++..-..++|..|-+
T Consensus 231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~ 276 (293)
T COG2962 231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWL 276 (293)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887743
No 42
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.04 E-value=0.00018 Score=57.62 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032161 13 VPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQ 92 (146)
Q Consensus 13 ~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~ 92 (146)
++..+.+..++.-+..++..|+.-++ .|......+=-.++.+.-....-....-+.| -.+|||..+..+|++|. +.|
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk~-~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP-~cgkdr~l~~~lGvfgf-igQ 267 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGKN-AHAIMSVSYFSLITLVVSLIGCASIGAVQLP-HCGKDRWLFVNLGVFGF-IGQ 267 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhcc-ccEEEEehHHHHHHHHHHHHHHhhccceecC-ccccceEEEEEehhhhh-HHH
Confidence 34556666666667777888876333 5554444444444433222221111222333 46788888889999986 899
Q ss_pred HHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 93 ICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 93 ~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
++...|+|.--|+..+++.++.-++..++-+++.+|..+++.|-+-+.+.
T Consensus 268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vv 317 (346)
T KOG4510|consen 268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVV 317 (346)
T ss_pred HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeee
Confidence 99999999999999999999999999999999999999999998766543
No 43
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.74 E-value=0.01 Score=39.81 Aligned_cols=57 Identities=14% Similarity=-0.046 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHH-HHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032161 85 LIGITLMQICVYTGVSFSSPTLVSA-TNNLIPAFTFLLAVIFRFFFFFIFVVFYFLII 141 (146)
Q Consensus 85 l~g~~~~~~l~~~gl~~tsas~asi-i~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~ 141 (146)
+.+....+.++..++++.+.+.+-- ...+..+.+.+.++.+.+|+++...++++.+|
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3455567788999999999999954 56799999999999999999999999999876
No 44
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.54 E-value=0.018 Score=45.27 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 73 TFALLCKVFILSLIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 73 ~~~~~~~l~~lgl~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
++||...+.+-+++- ...+.+.+.++++.+|+.-.++.++-.++|++++++++|++++..-|.+.++...
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~ 82 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVA 82 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHH
Confidence 467788888888874 5888899999999999999999999999999999999999999999999988764
No 45
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.33 Score=40.20 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHhhhhcC--CC--CC------CCHHHHHH
Q 032161 13 VPYAAMVAVQCVQVGITTLSKAAISQG---ATPLILAVYADAIASLILLPLSFFLNRK--NR--PP------LTFALLCK 79 (146)
Q Consensus 13 ~~~l~ll~~~~~wg~~~v~~K~~l~~g---~~P~~l~~~R~~iA~l~l~~~~~~~~~~--~~--~~------~~~~~~~~ 79 (146)
..++.++...+-+++.....|+.-... +.|.+..+.--.+-.++.....+..+|+ +. .. .+++|...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 457888888999999999999986554 7788888888777776666665554322 11 11 13456666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 80 VFILSLIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 80 l~~lgl~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
+.+=+++- ++.+-+++.++.+.+|+.-.+..++=-+.|++++.++++++.+.+-|...++..
T Consensus 95 ~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~ 156 (345)
T KOG2234|consen 95 VSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLF 156 (345)
T ss_pred HHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66666664 466679999999999999999999999999999999999999999988766543
No 46
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.25 E-value=0.028 Score=45.98 Aligned_cols=103 Identities=18% Similarity=0.178 Sum_probs=77.4
Q ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Q 032161 30 TLSKAAIS--QGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLV 107 (146)
Q Consensus 30 v~~K~~l~--~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~l~~~gl~~tsas~a 107 (146)
+..|+.++ +.--|.+++..+...+.+.+...-.+...+..+..++..+..++-+|++-. +...+-+.++++.+.+..
T Consensus 34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~-~~~v~~n~Sl~~v~VsF~ 112 (316)
T KOG1441|consen 34 ILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFC-ISHVLGNVSLSYVPVSFY 112 (316)
T ss_pred EeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHH-HHHHhcchhhhccchhHH
Confidence 46788887 556789999998888877766654332222222223455677777887754 566788899999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhhHHHHHH
Q 032161 108 SATNNLIPAFTFLLAVIFRFFFFFIF 133 (146)
Q Consensus 108 sii~~l~Pv~t~lla~l~l~E~~~~~ 133 (146)
-.+=++.|.++.++++++.+|+...-
T Consensus 113 q~iKa~~P~~tvl~~~~~~~~~~s~~ 138 (316)
T KOG1441|consen 113 QTIKALMPPFTVLLSVLLLGKTYSSM 138 (316)
T ss_pred HHHHhhcchhHHHHHHHHhCCCCcce
Confidence 99999999999999999999987643
No 47
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.98 E-value=0.21 Score=40.05 Aligned_cols=114 Identities=8% Similarity=-0.113 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM 91 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~ 91 (146)
.|+.+.++++.+.|..+....|.. ++||.+...=+...-.+.-..+.... + .+..+++.|.. ++-|++-. ..
T Consensus 137 ~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~-~--~~~~~k~~~~n-il~G~~w~-ig 208 (269)
T PF06800_consen 137 KKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFS-K--KPFFEKKSWKN-ILTGLIWG-IG 208 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcc-c--ccccccchHHh-hHHHHHHH-HH
Confidence 568889999999999999999873 38888877755332222212222221 1 11233344444 45555544 56
Q ss_pred HHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHH
Q 032161 92 QICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIF 133 (146)
Q Consensus 92 ~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~ 133 (146)
+.+++.+.+..+.+.+-.+..+.++...+.+.+++||+=...
T Consensus 209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k 250 (269)
T PF06800_consen 209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK 250 (269)
T ss_pred HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence 678899999999999999999999999999999999985544
No 48
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.96 E-value=0.015 Score=47.51 Aligned_cols=135 Identities=13% Similarity=0.185 Sum_probs=102.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHH-HHHhhhhcCCC----C-CCCHHH
Q 032161 6 KQLVVGLVPYAAMVAVQCVQVGITTLSKAAIS---QGATPLILAVYADAIASLILL-PLSFFLNRKNR----P-PLTFAL 76 (146)
Q Consensus 6 ~~~~~~~~~~l~ll~~~~~wg~~~v~~K~~l~---~g~~P~~l~~~R~~iA~l~l~-~~~~~~~~~~~----~-~~~~~~ 76 (146)
.|...++.+.+....+.+..+...+..|..+. +.+|++.+..+.--++...++ |+....+.... . ..+..
T Consensus 156 ~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~- 234 (316)
T KOG1441|consen 156 TELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT- 234 (316)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-
Confidence 45557788999999999999999999999983 359999999999999999998 87665443221 1 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 77 LCKVFILSLIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 77 ~~~l~~lgl~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
.....+.+.+ ...+|...|..+.+|||.+-++....==.++...++++++|++++--++|..+-+
T Consensus 235 ~~~~~~~sv~-~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai 299 (316)
T KOG1441|consen 235 FLILLLNSVL-AFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAI 299 (316)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHH
Confidence 3344555544 4567788889999999999888887767777788888888888888888877654
No 49
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=95.66 E-value=0.27 Score=39.99 Aligned_cols=114 Identities=19% Similarity=0.159 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHHHHHHHHhhhhcCCCC---------------CCCHHHHHHHHHH
Q 032161 26 VGITTLSKAAIS---QGA----TPLILAVYADAIASLILLPLSFFLNRKNRP---------------PLTFALLCKVFIL 83 (146)
Q Consensus 26 g~~~v~~K~~l~---~g~----~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~---------------~~~~~~~~~l~~l 83 (146)
..|.+..|++-+ +|- +|..-+..-|+.-++|+..+...+.|.+.+ +.+++....=.++
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~ 95 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC 95 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence 467788888732 233 367667777777788888877665443211 2222222222334
Q ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 84 SLIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 84 gl~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
-+.|+ .+.|.|+.+|+|+.--.+-...-+||.+++.-+++.++.-..|++++-+.+
T Consensus 96 Di~gs----slm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~l 151 (372)
T KOG3912|consen 96 DIAGS----SLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSL 151 (372)
T ss_pred HHhhh----HHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHh
Confidence 44454 667799999999999999999999999999999999999999999876543
No 50
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.31 E-value=0.072 Score=37.31 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032161 19 VAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTG 98 (146)
Q Consensus 19 l~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~l~~~g 98 (146)
+++.++||.+.++.|...+. .++..-.. |..-.... .+ .+++.+. .+.-.-...+.|+..
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~-----Ll--------~n~~y~i-----pf~lNq~GSv~f~~~ 61 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF-----LL--------LNPKYII-----PFLLNQSGSVLFFLL 61 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH-----HH--------HhHHHHH-----HHHHHHHHHHHHHHH
Confidence 45789999999999999764 55554432 32211111 00 1222221 222233344778899
Q ss_pred hhhccHHHHHHHH-hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 99 VSFSSPTLVSATN-NLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 99 l~~tsas~asii~-~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
+..++-+.+.-+. ++.=++|++.++++.+|......+.+..+++.
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~ 107 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILA 107 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHc
Confidence 9999999999885 78899999999999999999889999988864
No 51
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=95.07 E-value=0.08 Score=43.30 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=57.8
Q ss_pred CCCHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 71 PLTFALLCKVF-ILSLIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 71 ~~~~~~~~~l~-~lgl~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
+.+|+|..+-+ -.|+. +++.-.+-+++++|++-+--+..=+..|+|+.+++.+|.-|++..++++-.++|-
T Consensus 77 ~~sw~~~Lr~~aPtala-ta~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~ 148 (349)
T KOG1443|consen 77 VLSWRDYLRRLAPTALA-TALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIA 148 (349)
T ss_pred CCcHHHHHHHhhhhhhh-hhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 45677765433 44444 4577888899999999998888889999999999999999999999988777663
No 52
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.04 E-value=0.52 Score=35.87 Aligned_cols=56 Identities=14% Similarity=0.044 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 032161 89 TLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILLS 144 (146)
Q Consensus 89 ~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~~ 144 (146)
...+.+..+-+++.++..-+...++.++++.+++.++.+|+++...|++..+.+.+
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~ 218 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLA 218 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHee
Confidence 34556778999999999999999999999999999999999999999999887754
No 53
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.01 E-value=0.89 Score=32.66 Aligned_cols=122 Identities=10% Similarity=0.084 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 032161 18 MVAVQCVQVGITTLSKAAISQGA-TPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVY 96 (146)
Q Consensus 18 ll~~~~~wg~~~v~~K~~l~~g~-~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~l~~ 96 (146)
.+.+..+-+.....--..-++ . ||..-++.-+..+++.+..+....++++.++.+..+|. ...-|++|. .+-.+..
T Consensus 6 a~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w-~~lGG~lG~-~~V~~~~ 82 (138)
T PF04657_consen 6 ALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWW-AYLGGLLGV-FFVLSNI 82 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChH-HhccHHHHH-HHHHHHH
Confidence 334444444433333332222 4 59999999999999888877666554322222222232 333666665 7777888
Q ss_pred HHhhhccHHHHHHHHh-hHHHHHHHHHHH----HhhHHHHHHHHHHHHHHH
Q 032161 97 TGVSFSSPTLVSATNN-LIPAFTFLLAVI----FRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 97 ~gl~~tsas~asii~~-l~Pv~t~lla~l----~l~E~~~~~~~~~~~~~~ 142 (146)
...+..+++++....- -+=+...++.++ ..+++++.....+..+++
T Consensus 83 ~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i 133 (138)
T PF04657_consen 83 ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMI 133 (138)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHH
Confidence 9999999999887754 445555666664 456777777777776654
No 54
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.84 E-value=0.096 Score=43.87 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032161 90 LMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLI 140 (146)
Q Consensus 90 ~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~ 140 (146)
..++.++.++++|+++..+++.++.-+||..+|.++..|+++..+++.-.+
T Consensus 171 ~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~ 221 (416)
T KOG2765|consen 171 LANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFV 221 (416)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 667889999999999999999999999999999999999999999987554
No 55
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=94.69 E-value=0.19 Score=35.49 Aligned_cols=61 Identities=16% Similarity=0.080 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHH-HhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 83 LSLIGITLMQICVYTGVSFSSPTLVSAT-NNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 83 lgl~g~~~~~~l~~~gl~~tsas~asii-~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
+.+.+....+.++..++++.+.+.|-.+ ..+.-+.+.+.++++++|+++...++++.+|..
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~ 96 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVA 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3455556777888999999999998877 468899999999999999999999999998874
No 56
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=94.67 E-value=1.5 Score=35.74 Aligned_cols=132 Identities=14% Similarity=0.213 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHH----HHHHhhhhc-C--CCCCCCHHHHHHH--
Q 032161 11 GLVPYAAMVAVQCVQVGITTLSKAAI-SQGATPLILAVYADAIASLIL----LPLSFFLNR-K--NRPPLTFALLCKV-- 80 (146)
Q Consensus 11 ~~~~~l~ll~~~~~wg~~~v~~K~~l-~~g~~P~~l~~~R~~iA~l~l----~~~~~~~~~-~--~~~~~~~~~~~~l-- 80 (146)
-..+.++.+.++++-|.-++.-.+-+ ..+++|...+.+.-..+..++ .|+.+.... . ..++-.+.||...
T Consensus 174 iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~ 253 (372)
T KOG3912|consen 174 IITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFA 253 (372)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHH
Confidence 34678899999999999998765444 456999999999988885443 344333221 1 1244446676653
Q ss_pred -------HHHHHHHHHHHHHHHHHH----hhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 81 -------FILSLIGITLMQICVYTG----VSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 81 -------~~lgl~g~~~~~~l~~~g----l~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
+.+++.|......+||.+ -++.||++=.+.-.+=-.+.-+++.....|.++-.-..+|++..
T Consensus 254 ~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi 326 (372)
T KOG3912|consen 254 ALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILI 326 (372)
T ss_pred HhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 234444444443344333 56778888889999999999999999999999999999998765
No 57
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=94.59 E-value=0.24 Score=34.30 Aligned_cols=59 Identities=14% Similarity=0.041 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHH-HhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 85 LIGITLMQICVYTGVSFSSPTLVSAT-NNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 85 l~g~~~~~~l~~~gl~~tsas~asii-~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
+.+....+.+.-.++|+.+.+.|-.+ ...--+.+.+.++++++|+++...+++..+|+.
T Consensus 37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~Liia 96 (106)
T COG2076 37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILA 96 (106)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHH
Confidence 44555677888899999999888755 678899999999999999999999999998864
No 58
>PRK13499 rhamnose-proton symporter; Provisional
Probab=94.46 E-value=2.4 Score=35.26 Aligned_cols=132 Identities=15% Similarity=0.050 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCCHHHHHHHHHH---HHHHHHHH-HHhhhh-c-CCC-----CCCC
Q 032161 12 LVPYAAMVAVQCVQVGIT-------TLSKAAISQGATPLILAVYADA---IASLILLP-LSFFLN-R-KNR-----PPLT 73 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~-------v~~K~~l~~g~~P~~l~~~R~~---iA~l~l~~-~~~~~~-~-~~~-----~~~~ 73 (146)
.|+.+.++++.+..+.+. +.-+.+...|.||.....-++. ++..+.-+ +..+.. | ++. .+.+
T Consensus 173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~ 252 (345)
T PRK13499 173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLA 252 (345)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcccc
Confidence 568888888999998888 6666655567888887777776 55444332 222221 2 111 1112
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHhhhccHHHHHH---HH-hhHHHHHHHHHHHHhhHHHH------HHHHHHHHH
Q 032161 74 FALLCKVFILSLIGITL---MQICVYTGVSFSSPTLVSA---TN-NLIPAFTFLLAVIFRFFFFF------IFVVFYFLI 140 (146)
Q Consensus 74 ~~~~~~l~~lgl~g~~~---~~~l~~~gl~~tsas~asi---i~-~l~Pv~t~lla~l~l~E~~~------~~~~~~~~~ 140 (146)
++.+.+-.+.+.+++.. .+.++..|-+..+.+.+.. +. .+.-++..+.+. ++||.=. .+.+.++++
T Consensus 253 ~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vl 331 (345)
T PRK13499 253 KPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVV 331 (345)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHH
Confidence 22333333333333333 3456666666664444433 44 555566666666 6999865 677777777
Q ss_pred HHhc
Q 032161 141 ILLS 144 (146)
Q Consensus 141 ~~~~ 144 (146)
+..+
T Consensus 332 iI~g 335 (345)
T PRK13499 332 IILA 335 (345)
T ss_pred HHHH
Confidence 6543
No 59
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=94.31 E-value=0.25 Score=34.34 Aligned_cols=60 Identities=10% Similarity=-0.008 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHH-HhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 84 SLIGITLMQICVYTGVSFSSPTLVSAT-NNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 84 gl~g~~~~~~l~~~gl~~tsas~asii-~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
.+.+..+.+.++..++++.+.+.|-.+ ..+.-+.+.+.++++++|+++...++|+.+|..
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~ 96 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICA 96 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 345555677777889999998888766 567888899999999999999999999998864
No 60
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=94.16 E-value=1.6 Score=35.34 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM 91 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~ 91 (146)
.-+....+.+.++-|......|+...+ .+. ...| ++ +.++.-.++. ....|+.-....
T Consensus 6 ~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~---------------~~-~~~~~~l~~~--~W~~G~~~~~~g 63 (300)
T PF05653_consen 6 YIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR---------------AG-SGGRSYLRRP--LWWIGLLLMVLG 63 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc---------------cc-chhhHHHhhH--HHHHHHHHHhcc
Confidence 346677778888889999888887543 111 0000 00 0011111222 222333333445
Q ss_pred HHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 032161 92 QICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILLS 144 (146)
Q Consensus 92 ~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~~ 144 (146)
+.+.+.++.+.+++..+-+.++.=++..+++..+++|++....+.+..++.+.
T Consensus 64 ~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G 116 (300)
T PF05653_consen 64 EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILG 116 (300)
T ss_pred hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhh
Confidence 56778999999999999999999999999999999999999999988877653
No 61
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=93.71 E-value=0.1 Score=40.50 Aligned_cols=51 Identities=22% Similarity=0.122 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032161 90 LMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLI 140 (146)
Q Consensus 90 ~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~ 140 (146)
+.++.|..+++..+|+.++.+...+..|+.+++++.++++++.+....-++
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaail 115 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAIL 115 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 567889999999999999999999999999999999999999988765443
No 62
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=3.4 Score=33.90 Aligned_cols=122 Identities=18% Similarity=0.072 Sum_probs=82.4
Q ss_pred HHHHHHHHHH----HHHHHHHHhCCCCHHHHHH--HHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032161 19 VAVQCVQVGI----TTLSKAAISQGATPLILAV--YADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQ 92 (146)
Q Consensus 19 l~~~~~wg~~----~v~~K~~l~~g~~P~~l~~--~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~ 92 (146)
+.+++.|+.+ .+.-|.++.+.=-|..+.. +|.+...+.+...-..+.- +-++.+++.....+-+.++-. +..
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv-~~~~l~~~~~kk~~P~~~lf~-~~i 91 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLV-NFRPLDLRTAKKWFPVSLLFV-GML 91 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcee-ecCCcChHHHHHHccHHHHHH-HHH
Confidence 3445555544 4456777765334555555 8888877766554222111 124566776666666666643 444
Q ss_pred HHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 93 ICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 93 ~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
..-..+++|.+...-.++=+.+|+++++....+++.+..-..|.-.....
T Consensus 92 ~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~ 141 (314)
T KOG1444|consen 92 FTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMI 141 (314)
T ss_pred HHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHH
Confidence 55567899999999999999999999999999999888887777665543
No 63
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.09 E-value=0.73 Score=38.73 Aligned_cols=120 Identities=17% Similarity=0.125 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC---CCCCHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQ---GATPLILAVYADAIASLILLPLSFFLNRKNR---PPLTFALLCKVFILSL 85 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~---g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~---~~~~~~~~~~l~~lgl 85 (146)
..+.+..+.+++.||.+.++.|+-.++ ++|--.+..+=-++..++++|..+..++-.. +-++..+...++..++
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l 325 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL 325 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence 467889999999999999999987643 3666666666666677788876654332111 2233455667788999
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHh-hHHHHHHHHHHHHhhHHHHH
Q 032161 86 IGITLMQICVYTGVSFSSPTLVSATNN-LIPAFTFLLAVIFRFFFFFI 132 (146)
Q Consensus 86 ~g~~~~~~l~~~gl~~tsas~asii~~-l~Pv~t~lla~l~l~E~~~~ 132 (146)
+|..+.-++|-+|.-.|+|-.+++=++ ++|+ .++.-.++-+.+.+.
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPL-A~~aD~l~k~~~~S~ 372 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPL-AMFADVLIKGKHPSA 372 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeEeeeH-HHHHHHHHcCCCCCH
Confidence 999999999999999999999987666 4454 444555554444433
No 64
>PRK11431 multidrug efflux system protein; Provisional
Probab=92.91 E-value=0.6 Score=32.18 Aligned_cols=59 Identities=3% Similarity=-0.123 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHH-HhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 85 LIGITLMQICVYTGVSFSSPTLVSAT-NNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 85 l~g~~~~~~l~~~gl~~tsas~asii-~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
+.+....+.+...++|+.+.+.+-.+ ...--+.+.+.++++.+|+++...++++.+|..
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~ 95 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVA 95 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 44555677788899999998888766 558889999999999999999999999998864
No 65
>PRK13499 rhamnose-proton symporter; Provisional
Probab=92.89 E-value=1.5 Score=36.40 Aligned_cols=114 Identities=12% Similarity=0.026 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh--hhhcC---CCCCCCHHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSF--FLNRK---NRPPLTFALLCKVFILSLI 86 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~--~~~~~---~~~~~~~~~~~~l~~lgl~ 86 (146)
..+++..+++.+|||++++..|. .++ .| .+....-..+=.-++.|+.. ...+. .....+.+.+..-++-|.+
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~-w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~ 82 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKK-WS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL 82 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCC-Cc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH
Confidence 35889999999999999999998 333 33 22221111111112222111 11110 0112345556655566665
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHH-HhhHHHHHHHHHHHHhhHH
Q 032161 87 GITLMQICVYTGVSFSSPTLVSAT-NNLIPAFTFLLAVIFRFFF 129 (146)
Q Consensus 87 g~~~~~~l~~~gl~~tsas~asii-~~l~Pv~t~lla~l~l~E~ 129 (146)
-. ..|..++.++++.+.+.+--+ +.++=+...++..++.+|-
T Consensus 83 W~-iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew 125 (345)
T PRK13499 83 WG-IGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNF 125 (345)
T ss_pred HH-hhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHcccc
Confidence 44 667899999999999988766 5688888899988888864
No 66
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=91.72 E-value=1.6 Score=34.61 Aligned_cols=118 Identities=20% Similarity=0.219 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032161 26 VGITTLSKAAIS-QGATPLILAVYADAIASLILLPLSFFLNRKNRP----PLTFALLCKVFILSLIGITLMQICVYTGVS 100 (146)
Q Consensus 26 g~~~v~~K~~l~-~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~----~~~~~~~~~l~~lgl~g~~~~~~l~~~gl~ 100 (146)
+......|...+ .+..-.+-.++.-+++..+++.+.+..+.+... ..+.....++++-|+..+ +-.++--|.++
T Consensus 168 aafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv-giSy~saWcvr 246 (309)
T COG5070 168 AAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV-GISYCSAWCVR 246 (309)
T ss_pred HHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh-hhhhccceeEe
Confidence 334445555543 236778889999999999998888776643221 122223345555555543 44456667899
Q ss_pred hccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 032161 101 FSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILLS 144 (146)
Q Consensus 101 ~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~~ 144 (146)
-|+.+.-+..-+++-.-..+-+.++++|+.++.++|.+++-.+|
T Consensus 247 VtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfls 290 (309)
T COG5070 247 VTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLS 290 (309)
T ss_pred ehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887665
No 67
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=90.92 E-value=3.9 Score=28.31 Aligned_cols=59 Identities=12% Similarity=-0.102 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHH-HhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 85 LIGITLMQICVYTGVSFSSPTLVSAT-NNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 85 l~g~~~~~~l~~~gl~~tsas~asii-~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
+.+....+.+...++|+.+.+.+-.+ ...--+.+.+.++++.+|+++...++++.+|..
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~ 101 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLA 101 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34445667788899999999888766 568889999999999999999999999998864
No 68
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.81 E-value=5 Score=32.93 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhhcCC-----CC-CCCHHHHHHHHH
Q 032161 10 VGLVPYAAMVAVQCVQVGITTLSKAAISQ-GATPLILAVYADAIASLILLPLSFFLNRKN-----RP-PLTFALLCKVFI 82 (146)
Q Consensus 10 ~~~~~~l~ll~~~~~wg~~~v~~K~~l~~-g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~-----~~-~~~~~~~~~l~~ 82 (146)
.+.++|..+....+.-+...+..|+..+. +.+-..+..+--+.+.+.+....+..+..+ .+ ..+...+..+.+
T Consensus 154 f~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~l 233 (314)
T KOG1444|consen 154 FNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLL 233 (314)
T ss_pred ecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHH
Confidence 34567888888888889999999998764 477778888888888777666554332211 00 112234555666
Q ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 032161 83 LSLIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILLS 144 (146)
Q Consensus 83 lgl~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~~ 144 (146)
-+++|..+ .++-++..+.+||+.-++.-...-..+.+...++.+++++...++|.++-.++
T Consensus 234 Scv~gf~i-sy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~g 294 (314)
T KOG1444|consen 234 SCVMGFGI-SYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFG 294 (314)
T ss_pred HHHHHHHH-HHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhh
Confidence 66666644 45667889999999888888788888999999999999999999999876554
No 69
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=81.26 E-value=23 Score=29.16 Aligned_cols=128 Identities=7% Similarity=0.010 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-----CCCHHHHHHHHHHHHH
Q 032161 13 VPYAAMVAVQCVQVGITTLSKAAIS-QGATPLILAVYADAIASLILLPLSFFLNRKNRP-----PLTFALLCKVFILSLI 86 (146)
Q Consensus 13 ~~~l~ll~~~~~wg~~~v~~K~~l~-~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~-----~~~~~~~~~l~~lgl~ 86 (146)
.++.++..--.+=|......+...+ .++++..+...-.+..++.-........ ..++ +.+++-+..+++.+.+
T Consensus 172 ~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg-~~~~av~F~~~hp~~~~Di~l~s~~ 250 (327)
T KOG1581|consen 172 IGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQG-HLLPAVSFIKEHPDVAFDILLYSTC 250 (327)
T ss_pred HhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCC-CCchHHHHHHcChhHHHHHHHHHHh
Confidence 3455555555555666666665554 3588888887776666554333322111 1111 2355667778888888
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 87 GITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 87 g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
|. ..|.+.++-++.=++-.-+.|+.+=-.+.++++.+..+.+++..-|+|.++..
T Consensus 251 ga-vGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVF 305 (327)
T KOG1581|consen 251 GA-VGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVF 305 (327)
T ss_pred hh-hhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeeh
Confidence 86 77788889999999999999999999999999999999999998888876543
No 70
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=79.47 E-value=28 Score=27.26 Aligned_cols=121 Identities=9% Similarity=0.068 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH-hhhhcCCCC------CCCHHHHHHHHHHHH
Q 032161 13 VPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLS-FFLNRKNRP------PLTFALLCKVFILSL 85 (146)
Q Consensus 13 ~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~-~~~~~~~~~------~~~~~~~~~l~~lgl 85 (146)
.+..+.++++++-|...+...+.+++.-.|+..--.+...-+++..... ...++.+.. ..++..|..+..-++
T Consensus 114 ~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~ 193 (244)
T PF04142_consen 114 LGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQAI 193 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHHH
Confidence 4677888889999999999988887644555444444444433333332 222221111 112222332233333
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032161 86 IGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYF 138 (146)
Q Consensus 86 ~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~ 138 (146)
.| +..-.-+||.+...=+.-++..=+.+.+.++.+.+.+++..-.++.
T Consensus 194 gG-----llva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~ 241 (244)
T PF04142_consen 194 GG-----LLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGA 241 (244)
T ss_pred hh-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhe
Confidence 33 4445678999998888889999999999999999999888766653
No 71
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=75.29 E-value=3.9 Score=32.70 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 75 ALLCKVFILSLIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 75 ~~~~~l~~lgl~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
..|..+.++|+.+. +.|.+.|.-+.+-+|-.-|+++++--.||++.++++.+.+++---|.+-++..
T Consensus 239 ~~~~~l~l~ai~s~-LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF 305 (337)
T KOG1580|consen 239 YVFWDLTLLAIASC-LGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVF 305 (337)
T ss_pred HHHHHHHHHHHHHH-hhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Confidence 45667778888765 77888999999999999999999999999999999999999998888877654
No 72
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.27 E-value=13 Score=30.75 Aligned_cols=108 Identities=10% Similarity=0.091 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM 91 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~ 91 (146)
..+....+...++.|++++.-|+...+ . .....|. ++.++.-.+++ ....|++-..+.
T Consensus 20 ~~G~~LaissS~~Ig~sfilkKkgl~r-~---~~~~~ra----------------~~gg~~yl~~~--~Ww~G~ltm~vG 77 (335)
T KOG2922|consen 20 IIGLVLAISSSIFIGSSFILKKKGLKR-A---GASGLRA----------------GEGGYGYLKEP--LWWAGMLTMIVG 77 (335)
T ss_pred eeeeeehhhccEEEeeehhhhHHHHHH-H---hhhcccc----------------cCCCcchhhhH--HHHHHHHHHHHH
Confidence 345566677778889999999987654 1 1011111 11111112222 233444433344
Q ss_pred HHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032161 92 QICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLII 141 (146)
Q Consensus 92 ~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~ 141 (146)
...-|-+-.+.+++-.+-+-++.-+..+++|..+++|+++.....+-.+.
T Consensus 78 ei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~ 127 (335)
T KOG2922|consen 78 EIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLC 127 (335)
T ss_pred hHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEE
Confidence 44555666778888888888899999999999999999998777665443
No 73
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=63.19 E-value=30 Score=27.79 Aligned_cols=55 Identities=15% Similarity=0.019 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH-hhHHHHHHHHHHHHhhHH
Q 032161 74 FALLCKVFILSLIGITLMQICVYTGVSFSSPTLVSATN-NLIPAFTFLLAVIFRFFF 129 (146)
Q Consensus 74 ~~~~~~l~~lgl~g~~~~~~l~~~gl~~tsas~asii~-~l~Pv~t~lla~l~l~E~ 129 (146)
.+.+..-++-|++-. ..|..++.+.++.+.+++-=+. ..+=+.+.++++++++|.
T Consensus 42 ~~~~~~~~lsG~~W~-iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW 97 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWA-IGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEW 97 (269)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCC
Confidence 366666666666654 7789999999999999888664 567777999999999993
No 74
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.45 E-value=32 Score=28.19 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhhcCC----CCCC-CHHHHHHHHHHHH
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQ-GATPLILAVYADAIASLILLPLSFFLNRKN----RPPL-TFALLCKVFILSL 85 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~-g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~----~~~~-~~~~~~~l~~lgl 85 (146)
+.+.+.-..+.+.-+.+.+.+|..+.. +=.-..++++--..|.+..+|...+.+.-+ -++. ..+-|..+.+-|+
T Consensus 184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl 263 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL 263 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence 456777788889999999999976643 122356788888999999899865532211 1222 4566777777888
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHH
Q 032161 86 IGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIF 133 (146)
Q Consensus 86 ~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~ 133 (146)
+|..+++... +-+|-|||-.=-+=-+.=-.-=.++|+.+.+|.-+..
T Consensus 264 fgF~mgyvTg-~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l 310 (347)
T KOG1442|consen 264 FGFAMGYVTG-WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL 310 (347)
T ss_pred HHHHhhheee-EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh
Confidence 8876665432 4466666532211111112233467778888876543
No 75
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=51.33 E-value=1.4e+02 Score=24.63 Aligned_cols=120 Identities=16% Similarity=0.149 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHhhhhcC--CC---CCCCHHHHHHHHHHHHHHHHHHHHH
Q 032161 21 VQCVQVGITTLSKAAIS-QGATPLILAVYADAIASLILLPLSFFLNRK--NR---PPLTFALLCKVFILSLIGITLMQIC 94 (146)
Q Consensus 21 ~~~~wg~~~v~~K~~l~-~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~--~~---~~~~~~~~~~l~~lgl~g~~~~~~l 94 (146)
+-++=+.-......++. ++-+..+..++...++.+.++........- .+ ..-++|..+..++.+..|. +.+..
T Consensus 198 ALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gy-lG~~~ 276 (367)
T KOG1582|consen 198 ALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGY-LGIVF 276 (367)
T ss_pred HHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhH-hhHHH
Confidence 33333333444444432 345667888888888877665544332110 01 0123456677676666665 34444
Q ss_pred HHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032161 95 VYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLII 141 (146)
Q Consensus 95 ~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~ 141 (146)
...-++.-+|..++.+++.=-.+|.+++.++...++..--+-.-+++
T Consensus 277 VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv 323 (367)
T KOG1582|consen 277 VLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLV 323 (367)
T ss_pred HHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHH
Confidence 55667888999999999999999999999999999887555444444
No 76
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=48.94 E-value=19 Score=29.20 Aligned_cols=91 Identities=12% Similarity=0.102 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHH-HHHHHHHH
Q 032161 13 VPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFIL-SLIGITLM 91 (146)
Q Consensus 13 ~~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~l-gl~g~~~~ 91 (146)
++..+++.++.++|.+.+.-....++ .|-.++...--+.++++-. +.+..+|++...++|. +....++ ..++..+.
T Consensus 166 ~GD~lvi~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaIIsa-IQ~i~~~~~~~tl~w~-~~i~~yl~f~L~MFll 242 (336)
T KOG2766|consen 166 KGDFLVIAGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAIISA-IQFIFERHHVSTLHWD-SAIFLYLRFALTMFLL 242 (336)
T ss_pred cCcEEEEecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHHHH-HHHhhhccceeeEeeh-HHHHHHHHHHHHHHHH
Confidence 34566778888999999999888876 8988888777777766543 3345566554445542 2222222 23333344
Q ss_pred HHHHHHHhhhccHHH
Q 032161 92 QICVYTGVSFSSPTL 106 (146)
Q Consensus 92 ~~l~~~gl~~tsas~ 106 (146)
+.+.-.-++.++|+.
T Consensus 243 Ysl~pil~k~~~aT~ 257 (336)
T KOG2766|consen 243 YSLAPILIKTNSATM 257 (336)
T ss_pred HHhhHHheecCCceE
Confidence 444444566666653
No 77
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=48.52 E-value=1.6e+02 Score=24.43 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHh--hHHHHH
Q 032161 41 TPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLVSATNN--LIPAFT 118 (146)
Q Consensus 41 ~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~l~~~gl~~tsas~asii~~--l~Pv~t 118 (146)
+|.-+.+.+-+.+.+.-... ...+++. ...++.|.....+++... +-..+.+++++|.+=-.-.+-=+ .+| +
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~--l~~~k~~-~~~~apl~~y~~is~tn~-~s~~~~yeaLKyvSyPtq~LaKscKmIP--V 123 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAM--LKWWKKE-LSGVAPLYKYSLISFTNT-LSSWCGYEALKYVSYPTQTLAKSCKMIP--V 123 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHH--Hhccccc-CCCCCchhHHhHHHHHhh-cchHHHHHHHHhccchHHHHHHHhhhhH--H
Confidence 56677777777776554333 3233222 234456777788888865 66688999999998433333333 455 4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhc
Q 032161 119 FLLAVIFRFFFFFIFVVFYFLIILLS 144 (146)
Q Consensus 119 ~lla~l~l~E~~~~~~~~~~~~~~~~ 144 (146)
++++.+..+.+...+.-.|-.+|-+.
T Consensus 124 mlmg~Lvy~~ky~~~eYl~~~LIs~G 149 (327)
T KOG1581|consen 124 MLMGTLVYGRKYSSFEYLVAFLISLG 149 (327)
T ss_pred HHHHHHHhcCccCcHHHHHHHHHHhh
Confidence 67788999999888887777776543
No 78
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=47.56 E-value=74 Score=21.94 Aligned_cols=42 Identities=17% Similarity=0.118 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHH
Q 032161 84 SLIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIF 125 (146)
Q Consensus 84 gl~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~ 125 (146)
-+.|..+|..+...|+.-.+|++.+-..-..-++.-+.+++|
T Consensus 14 ~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlf 55 (104)
T PF11460_consen 14 FLLGGLLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLF 55 (104)
T ss_pred HHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHh
Confidence 345777888999999999999998876655556666666665
No 79
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=47.14 E-value=81 Score=23.14 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=28.9
Q ss_pred HhhhccHHHHHHHHhhHHHHHHHHHHH-----HhhHHHHHHHHH
Q 032161 98 GVSFSSPTLVSATNNLIPAFTFLLAVI-----FRFFFFFIFVVF 136 (146)
Q Consensus 98 gl~~tsas~asii~~l~Pv~t~lla~l-----~l~E~~~~~~~~ 136 (146)
|+.--+.-.++.+.++.|+++++.+.+ +..|.+.+.+-|
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~ 111 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAF 111 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 556667788899999999998877665 467777665544
No 80
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=43.06 E-value=95 Score=22.62 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=19.8
Q ss_pred HhhhccHHHHHHHHhhHHHHHHHHHHHHh
Q 032161 98 GVSFSSPTLVSATNNLIPAFTFLLAVIFR 126 (146)
Q Consensus 98 gl~~tsas~asii~~l~Pv~t~lla~l~l 126 (146)
++...+..+++.+.|+.|++.++.+..+.
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666778888888888777765533
No 81
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=38.90 E-value=9.1 Score=30.72 Aligned_cols=109 Identities=15% Similarity=0.102 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 032161 14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQI 93 (146)
Q Consensus 14 ~~l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~ 93 (146)
.++..++-++.||+........ |=+|.+=+.---+.| +++....++.. .|..+.+.+..-++-|.+-. ..|.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GA-Lifaiiv~~~~---~p~~T~~~~iv~~isG~~Ws-~GQ~ 74 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGA-LIFAIIVFLFV---SPELTLTIFIVGFISGAFWS-FGQA 74 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHH-HHHHHHHheee---cCccchhhHHHHHHhhhHhh-hhhh
Confidence 4567778899999988765442 235665444333333 33333333322 23455555544444444433 6678
Q ss_pred HHHHHhhhccHHHHHHHH-hhHHHHHHHHHHHHhhHHH
Q 032161 94 CVYTGVSFSSPTLVSATN-NLIPAFTFLLAVIFRFFFF 130 (146)
Q Consensus 94 l~~~gl~~tsas~asii~-~l~Pv~t~lla~l~l~E~~ 130 (146)
.++.+.++.+.+++.=+. ...-+-+-+++++.++|.-
T Consensus 75 ~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~ 112 (288)
T COG4975 75 NQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWT 112 (288)
T ss_pred hhhhheeeeeeeccccccchhhHhhceeeeEEEEeccC
Confidence 899999999999998664 4777788888888888853
No 82
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=36.26 E-value=2.5e+02 Score=23.36 Aligned_cols=131 Identities=17% Similarity=0.141 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-------CCCHHHHHH-
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQG----ATPLILAVYADAIASLILLPLSFFLNRKNRP-------PLTFALLCK- 79 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g----~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~-------~~~~~~~~~- 79 (146)
..+......+.++-|.-...++..+++. =+|++-...-.-.-.+.++|..+..|+...- ..+..+..+
T Consensus 163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 3566667777777777777777776541 2345444333333344556665555543210 111111212
Q ss_pred HHHHHHHHHHHH--HHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032161 80 VFILSLIGITLM--QICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIIL 142 (146)
Q Consensus 80 l~~lgl~g~~~~--~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~ 142 (146)
+..+++.|...+ -...+.-++.|+.-..++.--.-=+.+.++|..+.+|+++..-|.++.+.+
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~ 307 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICL 307 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 222333332222 233344567777766666666778889999999999999988888877764
No 83
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=35.70 E-value=73 Score=25.95 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhhHHHHHHHH
Q 032161 42 PLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLVSATNNLIPAFTFLL 121 (146)
Q Consensus 42 P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~l~~~gl~~tsas~asii~~l~Pv~t~ll 121 (146)
|..=++.-...=+++--|+..+++ +. + +..|.+.+++|+.-+-.+ .+.-.+-|||+-+...++..-.-..+.++
T Consensus 48 Pt~QtFl~Y~LLalVY~~~~~fR~--~~--~-~~~~~hYilla~~DVEaN-y~vV~AyQyTsmtSi~lLDcwaip~v~~l 121 (336)
T KOG2766|consen 48 PTSQTFLNYVLLALVYGPIMLFRR--KY--I-KAKWRHYILLAFVDVEAN-YFVVKAYQYTSMTSIMLLDCWAIPCVLVL 121 (336)
T ss_pred ccHHHHHHHHHHHHHHhhHHHhhh--HH--H-HHHHHHhhheeEEeeccc-EEEeeehhhcchHHHHHHHHhhhHHHHHH
Confidence 444445555544555556554422 22 1 223556788888766333 44558899999999999987666677889
Q ss_pred HHHHhhHHHHH
Q 032161 122 AVIFRFFFFFI 132 (146)
Q Consensus 122 a~l~l~E~~~~ 132 (146)
+|+++|.+-..
T Consensus 122 sw~fLktrYrl 132 (336)
T KOG2766|consen 122 SWFFLKTRYRL 132 (336)
T ss_pred HHHHHHHHHhh
Confidence 99999987543
No 84
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=34.75 E-value=53 Score=26.21 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=46.0
Q ss_pred HHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 032161 96 YTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILLSS 145 (146)
Q Consensus 96 ~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~~~ 145 (146)
-.+++|.+...-+++-|++-+.++.....+.+.++.....+.|.+..+||
T Consensus 86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS 135 (309)
T COG5070 86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSS 135 (309)
T ss_pred ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHH
Confidence 47799999999999999999999999999999999999999999988876
No 85
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=34.45 E-value=1.5e+02 Score=20.63 Aligned_cols=27 Identities=15% Similarity=0.216 Sum_probs=18.0
Q ss_pred hhhccHHHHHHHHhhHHHHHHHHHHHH
Q 032161 99 VSFSSPTLVSATNNLIPAFTFLLAVIF 125 (146)
Q Consensus 99 l~~tsas~asii~~l~Pv~t~lla~l~ 125 (146)
++..+..+++.+.+..|++.++.+..+
T Consensus 62 i~~~~~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 62 IPESSLLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred eccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777788888777776553
No 86
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=34.35 E-value=87 Score=17.68 Aligned_cols=29 Identities=7% Similarity=0.046 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032161 70 PPLTFALLCKVFILSLIGITLMQICVYTG 98 (146)
Q Consensus 70 ~~~~~~~~~~l~~lgl~g~~~~~~l~~~g 98 (146)
|..++|++...+..|..+......++-++
T Consensus 4 Pdm~RR~lmN~ll~Gava~~a~~~lyP~~ 32 (39)
T PF08802_consen 4 PDMSRRQLMNLLLGGAVAVPAGGMLYPYV 32 (39)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhhHHHHHHHHhhhhe
Confidence 34567888888888877665555554443
No 87
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=31.94 E-value=1.5e+02 Score=23.61 Aligned_cols=59 Identities=8% Similarity=0.000 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHHHHHHHHhhhhcCCCCCC
Q 032161 12 LVPYAAMVAVQCVQVGITTLSKAAISQG-------ATPLILAVYADAI----ASLILLPLSFFLNRKNRPPL 72 (146)
Q Consensus 12 ~~~~l~ll~~~~~wg~~~v~~K~~l~~g-------~~P~~l~~~R~~i----A~l~l~~~~~~~~~~~~~~~ 72 (146)
.-+..+.+++.+++|.+++-.++..++. -+++...+-.+.. +++.+...+.. +|++|+.
T Consensus 182 ivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~--~rn~P~v 251 (254)
T PF07857_consen 182 IVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCII--KRNKPKV 251 (254)
T ss_pred hHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHh--hcCCCCC
Confidence 4467788889999999999999987763 2455555555443 34444444433 3344544
No 88
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.19 E-value=2.2e+02 Score=20.84 Aligned_cols=108 Identities=11% Similarity=0.017 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032161 14 PYAAMVAVQCVQVGIT-TLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQ 92 (146)
Q Consensus 14 ~~l~ll~~~~~wg~~~-v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~ 92 (146)
..+..+.+..+-.... +-+|.....+ +|..-.+..+..++..+..+.+..+++.......+.-.+...-|++|. .+-
T Consensus 6 ~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa-~~v 83 (150)
T COG3238 6 YLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGA-IFV 83 (150)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhh-hhh
Confidence 3344444444443333 3334333223 699999999999999888887763332222111111112344455554 444
Q ss_pred HHHHHHhhhccHHHHHHH-HhhHHHHHHHHHH
Q 032161 93 ICVYTGVSFSSPTLVSAT-NNLIPAFTFLLAV 123 (146)
Q Consensus 93 ~l~~~gl~~tsas~asii-~~l~Pv~t~lla~ 123 (146)
..-..+.+..++++...+ ..-+=+...++..
T Consensus 84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~ 115 (150)
T COG3238 84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDH 115 (150)
T ss_pred hhhHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 444455666666555433 2333344444443
No 89
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=25.97 E-value=86 Score=25.28 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 90 LMQICVYTGVSFSSPTLVSATNNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 90 ~~~~l~~~gl~~tsas~asii~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
+.++.-+.++||.+=-...+=-+.-|+=++++++++.+..-+--.-.|.+.|..
T Consensus 97 lAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~ 150 (337)
T KOG1580|consen 97 LAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVV 150 (337)
T ss_pred HHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHH
Confidence 455666899999987777666788899999999999999988888888887754
No 90
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.86 E-value=4.2e+02 Score=22.62 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHhhh-hcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032161 24 VQVGITTLSKAAISQGATPLILAVYADAIASLILLP-LSFFL-NRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSF 101 (146)
Q Consensus 24 ~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~-~~~~~-~~~~~~~~~~~~~~~l~~lgl~g~~~~~~l~~~gl~~ 101 (146)
+|..+.-..|.+.++ +.-+...-....++-+.... +.+.. .|...|..++..-..+..+-++|. .+.|.|.+.
T Consensus 200 gWs~slY~i~ql~~n-Lq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~RS~~ilmWtLqli~l----vl~Yfsvq~ 274 (452)
T KOG3817|consen 200 GWSISLYVIKQLADN-LQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDPRSQTILMWTLQLIGL----VLAYFSVQH 274 (452)
T ss_pred cchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHHHHH----HHHHHhccc
Confidence 488888888888775 66666666666766433222 22211 122222222333333444555555 344689999
Q ss_pred ccHHHHHHHHhh
Q 032161 102 SSPTLVSATNNL 113 (146)
Q Consensus 102 tsas~asii~~l 113 (146)
++++.|.+|+.+
T Consensus 275 p~~a~A~iI~~l 286 (452)
T KOG3817|consen 275 PSAAIAAIIMVL 286 (452)
T ss_pred HHHHHHHHHHHH
Confidence 999988877654
No 91
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=23.92 E-value=70 Score=22.37 Aligned_cols=98 Identities=17% Similarity=0.136 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 032161 16 AAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICV 95 (146)
Q Consensus 16 l~ll~~~~~wg~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~l~ 95 (146)
..++.+..+||.+.++.|.... |.+...=.. |..-- +.++-+.. ..+++.+.. +++--+|+ .+|
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~-~k~~~--------~lqe~~tl-~l~w~Y~iP-FllNqcgS----aly 69 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSL-GWDKVKSSS-RKIMI--------ALQEMKTL-FLNWEYLIP-FLLNQCGS----ALY 69 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHh-hHhhccCch-HHHHH--------HHHHHHHH-HHhHHHHHH-HHHHHhhH----HHH
Confidence 4577889999999999998754 343322111 11100 01121111 133443333 34455565 455
Q ss_pred HHHhhhccHHHHHHHH-hhHHHHHHHHHHHHhhHH
Q 032161 96 YTGVSFSSPTLVSATN-NLIPAFTFLLAVIFRFFF 129 (146)
Q Consensus 96 ~~gl~~tsas~asii~-~l~Pv~t~lla~l~l~E~ 129 (146)
+.-+++++-+.+.=+. ++.=.+|...+..+..|.
T Consensus 70 ~~tLa~a~islavpv~nsltfafta~~G~~LGE~~ 104 (125)
T KOG4831|consen 70 YLTLASAPISLAVPVTNSLTFAFTAIFGKALGEET 104 (125)
T ss_pred HHHHhcCCceeeeeecchhHHHHHHHHHHHhcccc
Confidence 6778888877777554 567788888887655443
No 92
>PRK10621 hypothetical protein; Provisional
Probab=22.00 E-value=3.8e+02 Score=20.79 Aligned_cols=75 Identities=13% Similarity=0.072 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Q 032161 26 VGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPT 105 (146)
Q Consensus 26 g~~~v~~K~~l~~g~~P~~l~~~R~~iA~l~l~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~l~~~gl~~tsas 105 (146)
|+..+..-.....++||.+....-.+.....-..-....+|+ ...++|....+...++.|...-. +-+++.++.
T Consensus 31 GGg~i~vP~L~~~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~--~~v~~~~~~~l~~~~l~Ga~~G~----~l~~~l~~~ 104 (266)
T PRK10621 31 GGGLLTIPALLAAGMSPAQALATNKLQACGGSFSASLYFIRR--KVVNLADQKLNIAMTFVGSMSGA----LLVQYVQAD 104 (266)
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH----HHHHhCCHH
Confidence 444444444444468987654433322111111111222222 23677877777777777764443 334566654
Q ss_pred H
Q 032161 106 L 106 (146)
Q Consensus 106 ~ 106 (146)
.
T Consensus 105 ~ 105 (266)
T PRK10621 105 I 105 (266)
T ss_pred H
Confidence 3
No 93
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=21.94 E-value=5.3e+02 Score=22.39 Aligned_cols=18 Identities=11% Similarity=0.085 Sum_probs=14.5
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 032161 107 VSATNNLIPAFTFLLAVI 124 (146)
Q Consensus 107 asii~~l~Pv~t~lla~l 124 (146)
++.+++++|+++++++-+
T Consensus 310 ~~~~qslNp~~ii~l~P~ 327 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVF 327 (493)
T ss_pred HHHHHhHhHHHHHHHHHH
Confidence 678889999998877754
Done!