Query 032161
Match_columns 146
No_of_seqs 166 out of 1052
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 16:49:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.2 2.2E-06 7.6E-11 60.9 5.9 62 82-143 34-96 (137)
2 3b5d_A Multidrug transporter E 98.1 1.2E-05 4.1E-10 54.8 6.8 62 82-143 34-96 (110)
3 1q90_R Cytochrome B6-F complex 26.0 81 0.0028 17.8 3.3 35 70-104 7-41 (49)
4 2rdd_B UPF0092 membrane protei 10.2 1.4E+02 0.0048 15.4 1.5 8 134-141 14-21 (37)
5 1pi7_A VPU protein, U ORF prot 7.6 3.1E+02 0.01 14.3 4.8 21 16-36 13-33 (36)
6 2j7a_C Cytochrome C quinol deh 4.8 1.5E+02 0.0053 20.1 -0.0 28 77-104 12-39 (159)
7 2hac_A T-cell surface glycopro 4.6 4.8E+02 0.016 13.4 2.4 14 117-130 15-28 (33)
8 2cnr_A FAS, ACP, acyl carrier 4.2 4.8E+02 0.016 14.6 2.0 8 1-8 1-8 (82)
9 3kp1_E D-ornithine aminomutase 3.8 6.5E+02 0.022 16.8 2.5 21 26-46 80-100 (121)
10 3arc_L Photosystem II reaction 2.8 6.8E+02 0.023 13.0 1.4 20 127-146 14-33 (37)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.21 E-value=2.2e-06 Score=60.91 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHH-HhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 82 ILSLIGITLMQICVYTGVSFSSPTLVSAT-NNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 82 ~lgl~g~~~~~~l~~~gl~~tsas~asii-~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
.+|+++..+++.+++.++++.+++.+..+ .++.|+++.++++++++|+++...+.+..+|+.
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~ 96 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICA 96 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 57778888999999999999999999988 899999999999999999999999999998874
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.05 E-value=1.2e-05 Score=54.81 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHH-HhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 032161 82 ILSLIGITLMQICVYTGVSFSSPTLVSAT-NNLIPAFTFLLAVIFRFFFFFIFVVFYFLIILL 143 (146)
Q Consensus 82 ~lgl~g~~~~~~l~~~gl~~tsas~asii-~~l~Pv~t~lla~l~l~E~~~~~~~~~~~~~~~ 143 (146)
..++.+...++.++..++++.+.+.+..+ .++.|+++.+.++++++|+++...+.+..+|..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~ 96 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICA 96 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 56677777888999999999999999888 799999999999999999999999999998864
No 3
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=26.05 E-value=81 Score=17.80 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Q 032161 70 PPLTFALLCKVFILSLIGITLMQICVYTGVSFSSP 104 (146)
Q Consensus 70 ~~~~~~~~~~l~~lgl~g~~~~~~l~~~gl~~tsa 104 (146)
|..+||++...+.+|..+......++-+.--..+|
T Consensus 7 pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP 41 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPP 41 (49)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCC
Confidence 45678888888887777665554444444333443
No 4
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=10.20 E-value=1.4e+02 Score=15.44 Aligned_cols=8 Identities=50% Similarity=1.510 Sum_probs=4.5
Q ss_pred HHHHHHHH
Q 032161 134 VVFYFLII 141 (146)
Q Consensus 134 ~~~~~~~~ 141 (146)
.+|||++|
T Consensus 14 ~ifYFl~i 21 (37)
T 2rdd_B 14 LIFYFMIL 21 (37)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHh
Confidence 45666654
No 5
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=7.64 E-value=3.1e+02 Score=14.31 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032161 16 AAMVAVQCVQVGITTLSKAAI 36 (146)
Q Consensus 16 l~ll~~~~~wg~~~v~~K~~l 36 (146)
.+++++.+.|...+.--|...
T Consensus 13 valIiaIVVWtiv~ieYrk~~ 33 (36)
T 1pi7_A 13 VAIIIAIVVWSIVIIEGRGGK 33 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777666555443
No 6
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=4.85 E-value=1.5e+02 Score=20.14 Aligned_cols=28 Identities=11% Similarity=0.025 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccH
Q 032161 77 LCKVFILSLIGITLMQICVYTGVSFSSP 104 (146)
Q Consensus 77 ~~~l~~lgl~g~~~~~~l~~~gl~~tsa 104 (146)
++.+++.|++.+.+....+..++.+++.
T Consensus 12 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 39 (159)
T 2j7a_C 12 RLKLVLGGATLGVVALATVAFGMKYTDQ 39 (159)
T ss_dssp --CCSTTTHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhccCC
Confidence 4444555554443434455667777653
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=4.64 E-value=4.8e+02 Score=13.35 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhHHH
Q 032161 117 FTFLLAVIFRFFFF 130 (146)
Q Consensus 117 ~t~lla~l~l~E~~ 130 (146)
..+++..++.||++
T Consensus 15 Ygii~T~Ly~R~K~ 28 (33)
T 2hac_A 15 YGVILTALFLRVKF 28 (33)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh
Confidence 34445555666654
No 8
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=4.18 E-value=4.8e+02 Score=14.63 Aligned_cols=8 Identities=13% Similarity=0.302 Sum_probs=4.8
Q ss_pred CCcchhhh
Q 032161 1 MGMGVKQL 8 (146)
Q Consensus 1 ~~~~~~~~ 8 (146)
|+|+..++
T Consensus 1 m~m~~~~i 8 (82)
T 2cnr_A 1 MAATQEEI 8 (82)
T ss_dssp CCCCHHHH
T ss_pred CCCCHHHH
Confidence 67765553
No 9
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=3.83 E-value=6.5e+02 Score=16.79 Aligned_cols=21 Identities=10% Similarity=-0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHH
Q 032161 26 VGITTLSKAAISQGATPLILA 46 (146)
Q Consensus 26 g~~~v~~K~~l~~g~~P~~l~ 46 (146)
|...++.+.+...|++|.++.
T Consensus 80 GAa~~v~~a~~e~g~s~qeaa 100 (121)
T 3kp1_E 80 GAGHIVYKIAKEKNISVREAG 100 (121)
T ss_dssp CHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHcCCCHHHHH
No 10
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=2.84 E-value=6.8e+02 Score=13.03 Aligned_cols=20 Identities=20% Similarity=0.281 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcCC
Q 032161 127 FFFFFIFVVFYFLIILLSSS 146 (146)
Q Consensus 127 ~E~~~~~~~~~~~~~~~~~~ 146 (146)
|..+-..+.+-|++..+.||
T Consensus 14 RTSLy~GLLlifvlavlFss 33 (37)
T 3arc_L 14 RTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhh
Done!