Query 032161
Match_columns 146
No_of_seqs 166 out of 1052
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 16:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032161.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032161hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90r_ f.23.12.1 (R:) ISP sub 11.4 1E+02 0.0074 15.3 3.3 19 70-88 5-23 (39)
2 d1xioa_ f.13.1.1 (A:) Sensory 4.6 4.7E+02 0.034 16.9 8.1 10 113-122 79-88 (226)
3 d1pv7a_ f.38.1.2 (A:) Lactose 3.7 5.4E+02 0.039 16.4 8.7 7 40-46 286-292 (417)
4 d1iioa_ a.39.4.1 (A:) Hypothet 3.0 3.2E+02 0.023 15.6 1.8 6 1-6 4-9 (84)
5 d1w53a_ a.186.1.2 (A:) Phospho 2.9 5.1E+02 0.037 14.5 2.7 24 27-50 29-52 (84)
6 d2p7tc1 f.14.1.1 (C:86-119) Po 2.7 3.6E+02 0.026 12.3 3.1 13 116-128 21-33 (34)
7 d1ei6a_ c.76.1.4 (A:) Phosphon 2.1 2.9E+02 0.021 17.9 0.9 17 100-116 61-77 (406)
8 d1rh5b_ f.23.28.1 (B:) Preprot 2.1 5.7E+02 0.041 13.2 4.4 11 71-81 17-27 (56)
9 d2iuba2 f.17.3.1 (A:286-349) M 2.0 5.6E+02 0.04 12.9 2.1 31 2-32 27-57 (64)
10 d1zs4a1 a.35.1.9 (A:4-81) Regu 1.7 3.8E+02 0.028 14.9 0.8 26 1-26 30-58 (78)
No 1
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=11.42 E-value=1e+02 Score=15.28 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 032161 70 PPLTFALLCKVFILSLIGI 88 (146)
Q Consensus 70 ~~~~~~~~~~l~~lgl~g~ 88 (146)
|...+|++..++.+|-...
T Consensus 5 pDMgrR~~MNLll~G~~~~ 23 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGL 23 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccch
Confidence 4456788888888776544
No 2
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=4.56 E-value=4.7e+02 Score=16.94 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=4.1
Q ss_pred hHHHHHHHHH
Q 032161 113 LIPAFTFLLA 122 (146)
Q Consensus 113 l~Pv~t~lla 122 (146)
++|+....+.
T Consensus 79 TtPlll~~l~ 88 (226)
T d1xioa_ 79 TTPLLLLSLS 88 (226)
T ss_dssp HHHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 3344444333
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.70 E-value=5.4e+02 Score=16.39 Aligned_cols=7 Identities=0% Similarity=-0.510 Sum_probs=2.8
Q ss_pred CCHHHHH
Q 032161 40 ATPLILA 46 (146)
Q Consensus 40 ~~P~~l~ 46 (146)
.++....
T Consensus 286 ~~~~~~~ 292 (417)
T d1pv7a_ 286 IGGKNAL 292 (417)
T ss_dssp HCHHHHH
T ss_pred cccccch
Confidence 3444333
No 4
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.99 E-value=3.2e+02 Score=15.61 Aligned_cols=6 Identities=83% Similarity=1.149 Sum_probs=3.1
Q ss_pred CCcchh
Q 032161 1 MGMGVK 6 (146)
Q Consensus 1 ~~~~~~ 6 (146)
|+|+.+
T Consensus 4 ~~m~vk 9 (84)
T d1iioa_ 4 MKMGVK 9 (84)
T ss_dssp CCCSHH
T ss_pred cchhHH
Confidence 566633
No 5
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=2.88 E-value=5.1e+02 Score=14.55 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Q 032161 27 GITTLSKAAISQGATPLILAVYAD 50 (146)
Q Consensus 27 ~~~v~~K~~l~~g~~P~~l~~~R~ 50 (146)
..-=++|.++.++++|-.++-.--
T Consensus 29 ~~~~fsre~iek~IsPEeIV~iHk 52 (84)
T d1w53a_ 29 QAQKFSRKTIEHQIPPEEIISIHR 52 (84)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 445578888888899999886543
No 6
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=2.67 E-value=3.6e+02 Score=12.28 Aligned_cols=13 Identities=8% Similarity=-0.253 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhhH
Q 032161 116 AFTFLLAVIFRFF 128 (146)
Q Consensus 116 v~t~lla~l~l~E 128 (146)
++.++-.|+..+|
T Consensus 21 v~aa~atwfvgre 33 (34)
T d2p7tc1 21 VTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccc
Confidence 3444445555555
No 7
>d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas fluorescens [TaxId: 294]}
Probab=2.11 E-value=2.9e+02 Score=17.93 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=12.8
Q ss_pred hhccHHHHHHHHhhHHH
Q 032161 100 SFSSPTLVSATNNLIPA 116 (146)
Q Consensus 100 ~~tsas~asii~~l~Pv 116 (146)
..++|+.+|+++...|-
T Consensus 61 ~~c~PsrasllTG~yp~ 77 (406)
T d1ei6a_ 61 SFTNPNNLSIVTGAPPS 77 (406)
T ss_dssp CCHHHHHHHHHHTSCHH
T ss_pred CccHHHHHHHHhCCCHH
Confidence 35668889998887763
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.10 E-value=5.7e+02 Score=13.21 Aligned_cols=11 Identities=18% Similarity=-0.227 Sum_probs=6.1
Q ss_pred CCCHHHHHHHH
Q 032161 71 PLTFALLCKVF 81 (146)
Q Consensus 71 ~~~~~~~~~l~ 81 (146)
++++++.....
T Consensus 17 KP~~~Ef~~ia 27 (56)
T d1rh5b_ 17 KPTKDEYLAVA 27 (56)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 35666665543
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=2.02 E-value=5.6e+02 Score=12.90 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=0.0
Q ss_pred CcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 032161 2 GMGVKQLVVGLVPYAAMVAVQCVQVGITTLS 32 (146)
Q Consensus 2 ~~~~~~~~~~~~~~l~ll~~~~~wg~~~v~~ 32 (146)
|||.+++-+.-.++.......+.-.......
T Consensus 27 GMN~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 57 (64)
T d2iuba2 27 GMNFEYMPELRWKWGYPVVLAVMGVIAVIMV 57 (64)
T ss_dssp C--------------CHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCccHHHHHHHHHHHHHHHHHH
No 10
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=1.69 E-value=3.8e+02 Score=14.88 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCcc---hhhhhhhHHHHHHHHHHHHHHH
Q 032161 1 MGMG---VKQLVVGLVPYAAMVAVQCVQV 26 (146)
Q Consensus 1 ~~~~---~~~~~~~~~~~l~ll~~~~~wg 26 (146)
||++ .-+.++.+-+...|+++.+=||
T Consensus 30 mGv~esqiSRwK~~f~~q~smlLAvLE~G 58 (78)
T d1zs4a1 30 VGVDKSQISRWKRDWIPKFSMLLAVLEWG 58 (78)
T ss_dssp HTSCHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred hCCCHHHHHHHHHhhHHHHHHHHHHHHhc
Done!