Query 032162
Match_columns 146
No_of_seqs 140 out of 1484
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 10:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 6.4E-40 1.4E-44 241.7 15.2 141 1-144 126-266 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 3.7E-37 8E-42 227.5 14.5 144 1-144 144-287 (300)
3 PRK11172 dkgB 2,5-diketo-D-glu 100.0 4E-35 8.6E-40 217.8 16.1 139 1-143 114-253 (267)
4 PRK11565 dkgA 2,5-diketo-D-glu 100.0 3.6E-34 7.9E-39 213.4 16.0 142 1-144 123-264 (275)
5 KOG1575 Voltage-gated shaker-l 100.0 5.1E-34 1.1E-38 214.2 13.9 144 1-144 150-327 (336)
6 PRK10376 putative oxidoreducta 100.0 2.6E-31 5.6E-36 199.4 15.5 136 1-142 150-288 (290)
7 PRK09912 L-glyceraldehyde 3-ph 100.0 3.6E-31 7.8E-36 203.0 15.6 143 1-143 153-334 (346)
8 COG0667 Tas Predicted oxidored 100.0 6.2E-31 1.3E-35 199.2 15.3 141 1-142 141-309 (316)
9 TIGR01293 Kv_beta voltage-depe 100.0 4.4E-31 9.6E-36 200.4 14.1 140 1-140 135-316 (317)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.1E-31 6.7E-36 197.8 12.4 141 1-141 122-282 (283)
11 PRK10625 tas putative aldo-ket 100.0 2.2E-30 4.7E-35 198.7 15.6 143 1-143 164-340 (346)
12 cd06660 Aldo_ket_red Aldo-keto 100.0 4.6E-30 1E-34 191.7 15.4 140 1-140 133-285 (285)
13 COG4989 Predicted oxidoreducta 100.0 1.3E-29 2.7E-34 182.0 11.3 142 1-142 142-293 (298)
14 PLN02587 L-galactose dehydroge 100.0 3.2E-28 7E-33 184.5 14.1 142 1-142 137-300 (314)
15 PRK14863 bifunctional regulato 100.0 1.5E-28 3.3E-33 184.5 11.9 136 1-138 127-278 (292)
16 COG1453 Predicted oxidoreducta 99.9 2.1E-24 4.6E-29 162.3 12.7 139 1-144 136-287 (391)
17 KOG1576 Predicted oxidoreducta 99.7 1.6E-17 3.5E-22 120.9 10.7 131 1-131 163-310 (342)
18 KOG3023 Glutamate-cysteine lig 98.7 3E-08 6.5E-13 71.6 5.3 67 1-67 162-229 (285)
19 PRK10558 alpha-dehydro-beta-de 93.8 0.98 2.1E-05 33.6 9.3 96 6-127 15-115 (256)
20 PRK10128 2-keto-3-deoxy-L-rham 93.1 1.8 3.9E-05 32.5 9.8 96 6-127 14-114 (267)
21 TIGR03239 GarL 2-dehydro-3-deo 92.8 2 4.3E-05 31.9 9.5 97 5-127 7-108 (249)
22 PF07021 MetW: Methionine bios 91.4 0.95 2.1E-05 32.3 6.1 71 1-71 95-172 (193)
23 TIGR00216 ispH_lytB (E)-4-hydr 90.5 2.3 5E-05 32.2 7.8 67 48-122 200-273 (280)
24 PRK12360 4-hydroxy-3-methylbut 89.7 3.3 7.1E-05 31.4 8.1 98 16-122 165-274 (281)
25 PRK01045 ispH 4-hydroxy-3-meth 89.6 3.2 7E-05 31.6 8.1 106 9-122 157-275 (298)
26 COG1140 NarY Nitrate reductase 88.9 0.27 5.8E-06 38.6 1.8 53 7-60 263-317 (513)
27 COG0761 lytB 4-Hydroxy-3-methy 87.5 4 8.7E-05 30.9 7.2 68 48-123 204-278 (294)
28 TIGR02311 HpaI 2,4-dihydroxyhe 87.4 9.8 0.00021 28.2 9.8 97 4-127 6-108 (249)
29 PF02401 LYTB: LytB protein; 86.8 3.2 7E-05 31.4 6.5 107 8-122 155-274 (281)
30 COG4130 Predicted sugar epimer 86.3 6.7 0.00014 28.7 7.5 74 18-91 49-136 (272)
31 PRK00087 4-hydroxy-3-methylbut 82.2 8.4 0.00018 32.6 7.6 67 48-122 198-271 (647)
32 COG1149 MinD superfamily P-loo 81.1 4.6 9.9E-05 30.5 5.1 50 18-69 201-250 (284)
33 COG0159 TrpA Tryptophan syntha 75.4 30 0.00065 26.0 8.0 86 33-126 95-228 (265)
34 PF03102 NeuB: NeuB family; I 72.3 6.8 0.00015 29.0 3.9 66 48-125 59-135 (241)
35 COG2089 SpsE Sialic acid synth 70.2 11 0.00024 29.2 4.7 66 48-125 93-169 (347)
36 TIGR02026 BchE magnesium-proto 68.1 65 0.0014 26.3 9.5 66 2-67 232-306 (497)
37 COG0159 TrpA Tryptophan syntha 66.6 24 0.00052 26.5 5.8 16 49-64 83-102 (265)
38 PF11242 DUF2774: Protein of u 64.9 11 0.00024 21.7 2.9 22 81-102 15-36 (63)
39 PRK13602 putative ribosomal pr 61.6 28 0.00061 21.0 4.6 58 1-65 3-60 (82)
40 TIGR03569 NeuB_NnaB N-acetylne 59.9 18 0.00039 28.1 4.2 66 48-125 79-155 (329)
41 TIGR00381 cdhD CO dehydrogenas 57.6 37 0.00079 27.0 5.6 68 17-93 200-268 (389)
42 PF13378 MR_MLE_C: Enolase C-t 57.4 24 0.00052 22.1 4.0 49 16-66 3-54 (111)
43 COG3737 Uncharacterized conser 56.3 40 0.00087 22.2 4.7 59 10-69 44-107 (127)
44 TIGR03586 PseI pseudaminic aci 55.3 25 0.00055 27.2 4.4 19 48-67 80-98 (327)
45 PRK13505 formate--tetrahydrofo 55.0 1.3E+02 0.0028 25.3 9.1 52 21-72 362-415 (557)
46 COG2185 Sbm Methylmalonyl-CoA 54.7 58 0.0012 22.2 5.5 54 12-70 19-75 (143)
47 cd08606 GDPD_YPL110cp_fungi Gl 53.0 67 0.0014 24.0 6.3 29 3-31 158-186 (286)
48 PRK09856 fructoselysine 3-epim 52.3 81 0.0018 23.1 6.6 48 20-67 49-112 (275)
49 PF14871 GHL6: Hypothetical gl 52.0 16 0.00036 24.3 2.6 21 48-68 47-67 (132)
50 cd08572 GDPD_GDE5_like Glycero 51.6 68 0.0015 24.2 6.2 29 3-31 172-200 (293)
51 PHA02128 hypothetical protein 51.6 46 0.001 21.5 4.4 63 2-64 67-150 (151)
52 PF04800 ETC_C1_NDUFA4: ETC co 51.4 19 0.00042 22.9 2.7 23 47-69 58-80 (101)
53 PF00356 LacI: Bacterial regul 51.4 15 0.00032 19.7 1.9 39 82-124 2-40 (46)
54 cd08568 GDPD_TmGDE_like Glycer 51.0 89 0.0019 22.4 7.3 29 3-31 111-139 (226)
55 cd08605 GDPD_GDE5_like_1_plant 50.4 70 0.0015 23.8 6.1 27 5-31 165-191 (282)
56 TIGR01378 thi_PPkinase thiamin 50.2 91 0.002 22.2 6.5 36 90-125 71-110 (203)
57 CHL00200 trpA tryptophan synth 50.0 48 0.001 24.8 5.0 17 110-126 209-226 (263)
58 PRK04452 acetyl-CoA decarbonyl 49.1 51 0.0011 25.5 5.2 65 19-93 138-203 (319)
59 TIGR01182 eda Entner-Doudoroff 49.0 78 0.0017 22.8 5.8 17 47-63 90-106 (204)
60 PF00809 Pterin_bind: Pterin b 49.0 55 0.0012 23.4 5.1 51 13-67 75-125 (210)
61 PF04405 ScdA_N: Domain of Unk 48.3 49 0.0011 18.5 4.0 37 48-97 13-49 (56)
62 TIGR03221 muco_delta muconolac 48.2 36 0.00077 21.2 3.4 44 2-46 31-85 (90)
63 PRK14461 ribosomal RNA large s 47.3 99 0.0021 24.5 6.5 52 17-68 283-351 (371)
64 PLN02591 tryptophan synthase 47.0 39 0.00084 25.1 4.1 15 110-124 196-210 (250)
65 cd04742 NPD_FabD 2-Nitropropan 46.9 1E+02 0.0022 24.9 6.7 63 3-66 33-103 (418)
66 cd00308 enolase_like Enolase-s 46.8 70 0.0015 22.9 5.4 63 3-67 139-205 (229)
67 PF01120 Alpha_L_fucos: Alpha- 46.7 59 0.0013 25.2 5.3 57 13-69 86-162 (346)
68 TIGR03822 AblA_like_2 lysine-2 46.7 1.3E+02 0.0029 23.1 8.6 67 2-70 160-239 (321)
69 TIGR01660 narH nitrate reducta 46.4 11 0.00024 30.7 1.2 51 8-59 264-316 (492)
70 PF08727 P3A: Poliovirus 3A pr 46.1 15 0.00032 20.8 1.4 14 47-60 29-42 (57)
71 COG0108 RibB 3,4-dihydroxy-2-b 45.6 53 0.0011 23.7 4.4 18 76-93 171-188 (203)
72 PRK06015 keto-hydroxyglutarate 45.4 65 0.0014 23.1 4.9 17 47-63 86-102 (201)
73 cd00248 Mth938-like Mth938-lik 45.3 79 0.0017 20.1 6.2 50 16-67 37-88 (109)
74 cd04436 DEP_fRgd2 DEP (Disheve 45.1 8.2 0.00018 23.7 0.3 16 2-17 56-72 (84)
75 PF09336 Vps4_C: Vps4 C termin 45.1 40 0.00086 19.3 3.2 32 113-144 30-61 (62)
76 cd03319 L-Ala-DL-Glu_epimerase 44.8 96 0.0021 23.5 6.1 48 17-66 237-287 (316)
77 cd04743 NPD_PKS 2-Nitropropane 44.0 1.5E+02 0.0033 23.0 8.4 60 6-65 25-89 (320)
78 COG1168 MalY Bifunctional PLP- 43.3 83 0.0018 25.0 5.5 53 19-71 146-207 (388)
79 cd05560 Xcc1710_like Xcc1710_l 42.9 88 0.0019 20.0 6.0 47 18-67 40-88 (109)
80 PF01476 LysM: LysM domain; I 41.5 32 0.0007 17.4 2.3 20 79-98 6-25 (44)
81 PF06080 DUF938: Protein of un 41.5 33 0.0007 24.8 2.9 26 48-73 121-149 (204)
82 cd03322 rpsA The starvation se 41.4 68 0.0015 25.0 4.9 64 2-67 207-274 (361)
83 PF10668 Phage_terminase: Phag 40.2 30 0.00065 19.8 2.1 20 80-100 23-42 (60)
84 PRK14466 ribosomal RNA large s 39.9 1.5E+02 0.0032 23.3 6.5 18 50-67 271-290 (345)
85 cd08561 GDPD_cytoplasmic_ScUgp 39.8 1.5E+02 0.0032 21.6 7.0 65 3-67 127-221 (249)
86 PRK07998 gatY putative fructos 39.7 1.7E+02 0.0036 22.3 8.2 82 19-105 86-179 (283)
87 PF01408 GFO_IDH_MocA: Oxidore 39.5 95 0.0021 19.3 7.6 83 4-92 19-115 (120)
88 PRK07094 biotin synthase; Prov 39.4 1.7E+02 0.0037 22.2 8.1 110 4-125 82-204 (323)
89 PRK09140 2-dehydro-3-deoxy-6-p 39.1 1.4E+02 0.0031 21.3 7.8 101 15-124 16-123 (206)
90 PF10566 Glyco_hydro_97: Glyco 39.0 33 0.00071 25.9 2.7 23 48-70 76-98 (273)
91 TIGR01928 menC_lowGC/arch o-su 38.8 75 0.0016 24.3 4.7 63 3-67 217-283 (324)
92 cd08607 GDPD_GDE5 Glycerophosp 38.7 1.6E+02 0.0036 21.9 6.7 26 5-30 170-195 (290)
93 KOG1720 Protein tyrosine phosp 38.6 1.4E+02 0.003 21.8 5.7 57 49-113 139-196 (225)
94 PF05221 AdoHcyase: S-adenosyl 38.5 1.1E+02 0.0024 23.1 5.4 52 12-65 45-99 (268)
95 COG1504 Uncharacterized conser 38.4 73 0.0016 20.8 3.8 52 12-63 42-94 (121)
96 PF12728 HTH_17: Helix-turn-he 38.0 60 0.0013 17.1 3.1 26 3-28 20-48 (51)
97 PF14502 HTH_41: Helix-turn-he 37.9 63 0.0014 17.6 3.0 31 80-110 7-39 (48)
98 cd03323 D-glucarate_dehydratas 37.9 1.3E+02 0.0028 23.9 6.0 64 2-67 254-321 (395)
99 PRK14456 ribosomal RNA large s 37.7 1.4E+02 0.003 23.6 6.1 43 48-92 297-344 (368)
100 TIGR00262 trpA tryptophan synt 37.7 1.1E+02 0.0023 22.8 5.3 14 111-124 206-219 (256)
101 PF13518 HTH_28: Helix-turn-he 37.5 49 0.0011 17.3 2.7 22 81-103 14-35 (52)
102 PRK13111 trpA tryptophan synth 37.3 1.1E+02 0.0025 22.7 5.4 26 34-59 91-118 (258)
103 PF01402 RHH_1: Ribbon-helix-h 37.2 57 0.0012 16.1 2.8 18 80-97 12-29 (39)
104 PRK08776 cystathionine gamma-s 37.0 2E+02 0.0044 22.8 7.0 62 7-69 122-186 (405)
105 PRK10945 gene expression modul 37.0 57 0.0012 19.4 2.9 32 111-142 17-48 (72)
106 PF02426 MIase: Muconolactone 36.9 16 0.00035 22.8 0.7 30 2-31 32-72 (91)
107 TIGR00289 conserved hypothetic 36.4 1.7E+02 0.0037 21.4 8.1 113 19-142 46-168 (222)
108 CHL00200 trpA tryptophan synth 35.5 1.9E+02 0.0041 21.7 9.4 13 34-46 93-105 (263)
109 PF06506 PrpR_N: Propionate ca 35.5 80 0.0017 21.8 4.1 50 9-63 79-130 (176)
110 PRK14457 ribosomal RNA large s 35.2 1.9E+02 0.0041 22.6 6.5 21 49-69 275-297 (345)
111 PRK14464 ribosomal RNA large s 35.1 1.5E+02 0.0032 23.2 5.8 52 17-68 254-316 (344)
112 PRK14017 galactonate dehydrata 34.9 1E+02 0.0022 24.2 5.1 62 3-66 222-287 (382)
113 PRK15072 bifunctional D-altron 34.6 1.2E+02 0.0026 24.1 5.4 63 3-67 251-317 (404)
114 TIGR02899 spore_safA spore coa 34.4 38 0.00083 16.8 1.8 19 79-97 4-22 (44)
115 cd03315 MLE_like Muconate lact 34.0 1.7E+02 0.0036 21.5 5.8 16 49-64 222-237 (265)
116 PF04430 DUF498: Protein of un 33.8 97 0.0021 19.6 4.0 49 18-67 39-89 (110)
117 PRK13371 4-hydroxy-3-methylbut 33.7 1E+02 0.0022 24.6 4.8 67 48-122 279-371 (387)
118 KOG0077 Vesicle coat complex C 33.6 1.4E+02 0.003 21.2 4.8 27 4-30 17-43 (193)
119 COG0135 TrpF Phosphoribosylant 33.4 1.9E+02 0.0041 21.0 6.6 60 3-67 45-107 (208)
120 COG0820 Predicted Fe-S-cluster 33.4 1.8E+02 0.0038 23.0 5.9 51 17-67 267-328 (349)
121 PRK12738 kbaY tagatose-bisphos 33.2 1.6E+02 0.0035 22.4 5.7 82 19-105 86-181 (286)
122 PF02786 CPSase_L_D2: Carbamoy 33.1 1.9E+02 0.004 20.8 5.9 41 45-85 25-66 (211)
123 PF05368 NmrA: NmrA-like famil 32.8 1E+02 0.0022 21.9 4.4 65 3-70 39-106 (233)
124 PF00289 CPSase_L_chain: Carba 32.5 69 0.0015 20.5 3.1 37 48-91 64-100 (110)
125 PRK09454 ugpQ cytoplasmic glyc 32.4 2E+02 0.0043 21.0 6.9 60 8-67 140-218 (249)
126 PF05848 CtsR: Firmicute trans 32.2 1.7E+02 0.0037 20.1 5.7 55 82-136 28-100 (152)
127 PRK14981 DNA-directed RNA poly 32.2 74 0.0016 20.5 3.2 34 111-144 77-110 (112)
128 PF11580 DUF3239: Protein of u 32.1 83 0.0018 21.0 3.5 30 111-144 97-126 (128)
129 cd06543 GH18_PF-ChiA-like PF-C 32.0 45 0.00098 25.4 2.5 22 48-69 243-264 (294)
130 PRK06552 keto-hydroxyglutarate 31.8 49 0.0011 23.9 2.6 31 95-125 99-129 (213)
131 PRK08247 cystathionine gamma-s 31.6 2.1E+02 0.0045 22.2 6.2 56 11-67 117-175 (366)
132 cd00401 AdoHcyase S-adenosyl-L 31.4 2E+02 0.0043 23.2 6.1 52 12-65 38-92 (413)
133 cd03316 MR_like Mandelate race 31.4 1.2E+02 0.0026 23.4 4.8 61 3-65 234-298 (357)
134 PRK14459 ribosomal RNA large s 31.4 2.2E+02 0.0048 22.6 6.3 21 49-69 301-326 (373)
135 cd08612 GDPD_GDE4 Glycerophosp 31.3 2.3E+02 0.005 21.4 7.0 27 4-30 156-182 (300)
136 PRK05835 fructose-bisphosphate 31.2 2.5E+02 0.0054 21.7 6.8 105 19-128 86-206 (307)
137 COG1992 Uncharacterized conser 31.1 1E+02 0.0022 21.9 3.9 49 14-67 70-118 (181)
138 PF00875 DNA_photolyase: DNA p 30.6 1.2E+02 0.0026 20.4 4.3 62 3-65 61-124 (165)
139 TIGR00048 radical SAM enzyme, 30.6 2.2E+02 0.0048 22.3 6.2 20 49-68 278-299 (355)
140 KOG3085 Predicted hydrolase (H 30.6 86 0.0019 23.2 3.7 54 1-57 122-180 (237)
141 COG1167 ARO8 Transcriptional r 30.1 2.3E+02 0.005 22.9 6.4 56 10-65 201-267 (459)
142 COG2159 Predicted metal-depend 30.1 2.5E+02 0.0053 21.3 7.7 56 9-68 97-167 (293)
143 COG1460 Uncharacterized protei 30.0 86 0.0019 20.4 3.2 35 111-145 78-112 (114)
144 PRK06361 hypothetical protein; 29.9 2E+02 0.0044 20.2 6.4 15 49-63 126-140 (212)
145 PF01527 HTH_Tnp_1: Transposas 29.9 59 0.0013 18.6 2.3 24 80-104 24-47 (76)
146 cd03318 MLE Muconate Lactonizi 29.6 1.1E+02 0.0023 23.8 4.4 60 3-64 233-296 (365)
147 smart00812 Alpha_L_fucos Alpha 29.5 2.2E+02 0.0048 22.6 6.1 51 16-66 79-149 (384)
148 COG0773 MurC UDP-N-acetylmuram 29.4 7.9 0.00017 31.4 -2.0 59 48-111 80-141 (459)
149 PF05321 HHA: Haemolysin expre 29.1 45 0.00099 18.9 1.6 31 112-142 6-36 (57)
150 TIGR00936 ahcY adenosylhomocys 29.0 2.3E+02 0.0051 22.7 6.1 52 12-65 34-88 (406)
151 smart00481 POLIIIAc DNA polyme 29.0 85 0.0018 17.6 2.9 20 48-67 18-37 (67)
152 PF12244 DUF3606: Protein of u 29.0 89 0.0019 17.5 2.8 21 78-98 19-39 (57)
153 PF03874 RNA_pol_Rpb4: RNA pol 28.9 1.1E+02 0.0023 19.5 3.6 34 111-144 83-116 (117)
154 PF00290 Trp_syntA: Tryptophan 28.7 85 0.0018 23.5 3.5 70 49-126 131-221 (259)
155 COG3598 RepA RecA-family ATPas 28.7 1.1E+02 0.0024 24.1 4.1 53 48-101 79-165 (402)
156 cd08602 GDPD_ScGlpQ1_like Glyc 28.6 2.5E+02 0.0055 21.4 6.1 30 3-32 161-193 (309)
157 cd04724 Tryptophan_synthase_al 28.6 1.9E+02 0.0041 21.1 5.3 42 22-64 67-110 (242)
158 PRK12737 gatY tagatose-bisphos 28.6 2.5E+02 0.0055 21.3 6.0 81 20-105 87-181 (284)
159 PRK07535 methyltetrahydrofolat 28.6 2.5E+02 0.0054 20.9 8.2 53 13-66 72-124 (261)
160 cd06547 GH85_ENGase Endo-beta- 28.5 83 0.0018 24.5 3.5 19 47-65 48-66 (339)
161 KOG0369 Pyruvate carboxylase [ 28.4 2.5E+02 0.0055 24.6 6.4 28 46-73 172-199 (1176)
162 PRK09195 gatY tagatose-bisphos 28.1 2.7E+02 0.0059 21.2 7.1 82 19-105 86-181 (284)
163 cd08564 GDPD_GsGDE_like Glycer 28.0 2.2E+02 0.0047 21.0 5.6 63 3-65 141-230 (265)
164 PRK14463 ribosomal RNA large s 28.0 2.8E+02 0.006 21.7 6.3 20 49-68 270-291 (349)
165 PLN02821 1-hydroxy-2-methyl-2- 27.9 3.4E+02 0.0074 22.3 7.2 67 48-122 353-445 (460)
166 PF08438 MMR_HSR1_C: GTPase of 27.9 34 0.00074 22.1 1.1 60 79-144 11-78 (109)
167 TIGR01428 HAD_type_II 2-haloal 27.9 2E+02 0.0044 19.7 5.6 29 2-31 102-130 (198)
168 TIGR01502 B_methylAsp_ase meth 27.8 2.1E+02 0.0046 23.0 5.7 52 14-67 303-357 (408)
169 cd03325 D-galactonate_dehydrat 27.6 1.9E+02 0.004 22.4 5.3 61 3-65 221-285 (352)
170 COG0134 TrpC Indole-3-glycerol 27.6 56 0.0012 24.5 2.3 29 35-63 131-161 (254)
171 TIGR02534 mucon_cyclo muconate 27.5 1.4E+02 0.003 23.3 4.6 63 3-67 232-298 (368)
172 cd08601 GDPD_SaGlpQ_like Glyce 27.5 2.5E+02 0.0053 20.5 7.1 28 4-31 135-168 (256)
173 PRK14462 ribosomal RNA large s 27.3 2.8E+02 0.0062 21.8 6.3 21 49-69 283-305 (356)
174 PRK13561 putative diguanylate 27.1 2E+02 0.0043 24.1 5.8 81 2-95 541-630 (651)
175 cd03327 MR_like_2 Mandelate ra 27.1 1.6E+02 0.0036 22.6 4.9 58 4-63 217-278 (341)
176 PRK07709 fructose-bisphosphate 27.0 1.8E+02 0.0038 22.2 4.9 71 19-92 89-171 (285)
177 cd05126 Mth938 Mth938 domain. 26.8 1.8E+02 0.004 18.8 5.7 47 17-66 45-94 (117)
178 PF00352 TBP: Transcription fa 26.8 51 0.0011 19.9 1.7 21 104-124 57-77 (86)
179 COG2838 Icd Monomeric isocitra 26.5 98 0.0021 25.8 3.6 35 48-90 389-423 (744)
180 cd08579 GDPD_memb_like Glycero 26.3 2.4E+02 0.0052 19.9 6.7 63 4-66 121-198 (220)
181 PRK12302 bssR biofilm formatio 26.2 72 0.0016 20.5 2.3 33 112-144 36-79 (127)
182 PF04567 RNA_pol_Rpb2_5: RNA p 25.8 51 0.0011 17.7 1.4 15 2-16 2-16 (48)
183 PF13443 HTH_26: Cro/C1-type H 25.7 15 0.00033 20.4 -0.8 19 78-96 39-57 (63)
184 COG0365 Acs Acyl-coenzyme A sy 25.6 67 0.0014 26.7 2.6 79 58-141 227-314 (528)
185 cd00378 SHMT Serine-glycine hy 25.6 2.7E+02 0.0058 21.6 6.0 49 18-66 148-197 (402)
186 PLN02494 adenosylhomocysteinas 25.5 2.6E+02 0.0056 23.1 5.9 54 12-67 48-104 (477)
187 TIGR01858 tag_bisphos_ald clas 25.5 3E+02 0.0066 20.9 6.2 81 20-105 85-179 (282)
188 PF07862 Nif11: Nitrogen fixat 25.5 68 0.0015 17.0 1.9 23 112-134 26-48 (49)
189 PRK13958 N-(5'-phosphoribosyl) 25.4 1.3E+02 0.0028 21.6 3.8 44 8-56 51-95 (207)
190 PF09012 FeoC: FeoC like trans 25.4 33 0.00072 19.7 0.7 18 1-18 35-52 (69)
191 PF12162 STAT1_TAZ2bind: STAT1 25.3 76 0.0017 14.4 1.7 14 128-141 9-22 (23)
192 PRK14455 ribosomal RNA large s 25.2 3E+02 0.0066 21.5 6.1 44 48-93 281-329 (356)
193 PF05913 DUF871: Bacterial pro 25.1 1.4E+02 0.0031 23.5 4.2 52 13-64 2-66 (357)
194 PRK15456 universal stress prot 25.0 2E+02 0.0043 18.5 5.1 22 48-69 95-116 (142)
195 COG1831 Predicted metal-depend 25.0 2.5E+02 0.0054 21.4 5.3 58 2-59 114-185 (285)
196 TIGR03821 AblA_like_1 lysine-2 24.9 3.2E+02 0.007 21.0 8.2 67 3-70 167-245 (321)
197 PRK10206 putative oxidoreducta 24.9 2.4E+02 0.0053 21.7 5.5 39 48-91 78-116 (344)
198 PF08418 Pol_alpha_B_N: DNA po 24.9 66 0.0014 23.6 2.3 45 80-124 13-61 (253)
199 KOG0369 Pyruvate carboxylase [ 24.8 2.7E+02 0.0058 24.5 5.9 86 33-123 106-214 (1176)
200 PF10335 DUF294_C: Putative nu 24.8 1.5E+02 0.0032 19.8 3.9 50 89-143 41-91 (145)
201 COG3033 TnaA Tryptophanase [Am 24.8 2.6E+02 0.0057 22.5 5.5 72 17-88 168-254 (471)
202 COG5625 Predicted transcriptio 24.8 1.2E+02 0.0025 19.5 3.0 27 2-28 68-94 (113)
203 PRK07114 keto-hydroxyglutarate 24.6 79 0.0017 23.1 2.6 31 95-125 102-132 (222)
204 PF13380 CoA_binding_2: CoA bi 24.3 2E+02 0.0043 18.3 5.1 15 48-62 92-106 (116)
205 COG1179 Dinucleotide-utilizing 23.9 1.6E+02 0.0035 22.1 4.1 23 48-72 136-158 (263)
206 COG0161 BioA Adenosylmethionin 23.9 61 0.0013 26.4 2.1 21 49-69 240-260 (449)
207 PRK07106 5-aminoimidazole-4-ca 23.9 1.5E+02 0.0032 23.7 4.1 44 43-94 338-381 (390)
208 COG5201 SKP1 SCF ubiquitin lig 23.8 1.3E+02 0.0028 20.2 3.2 32 109-141 121-152 (158)
209 COG5484 Uncharacterized conser 23.8 66 0.0014 24.2 2.1 25 80-105 20-44 (279)
210 TIGR02814 pfaD_fam PfaD family 23.8 3E+02 0.0066 22.5 5.9 62 3-65 38-107 (444)
211 PRK00011 glyA serine hydroxyme 23.6 2.9E+02 0.0063 21.6 5.9 56 9-64 139-199 (416)
212 cd01821 Rhamnogalacturan_acety 23.6 2.5E+02 0.0054 19.2 8.1 87 9-95 36-151 (198)
213 PRK14454 ribosomal RNA large s 23.6 3.6E+02 0.0078 21.0 6.3 21 49-69 271-293 (342)
214 COG1104 NifS Cysteine sulfinat 23.5 1.4E+02 0.0031 23.8 4.0 61 3-64 110-177 (386)
215 TIGR03849 arch_ComA phosphosul 23.5 1.5E+02 0.0032 22.0 3.8 45 19-63 10-59 (237)
216 PRK13753 dihydropteroate synth 23.4 3.4E+02 0.0073 20.6 6.0 59 2-67 70-128 (279)
217 PF13467 RHH_4: Ribbon-helix-h 23.3 1.1E+02 0.0023 17.9 2.5 21 80-100 24-44 (67)
218 COG2069 CdhD CO dehydrogenase/ 23.3 3.7E+02 0.0079 21.0 6.6 56 12-69 203-262 (403)
219 PF01261 AP_endonuc_2: Xylose 22.7 2.6E+02 0.0055 19.0 5.5 48 20-67 29-93 (213)
220 PF10120 Aldolase_2: Putative 22.6 1.3E+02 0.0029 20.9 3.4 51 13-68 62-112 (170)
221 cd03018 PRX_AhpE_like Peroxire 22.5 2.3E+02 0.0049 18.3 4.6 15 48-62 74-88 (149)
222 PF03962 Mnd1: Mnd1 family; I 22.4 26 0.00056 24.9 -0.3 18 1-18 36-55 (188)
223 PRK05476 S-adenosyl-L-homocyst 22.3 3.8E+02 0.0082 21.7 6.2 51 12-64 50-103 (425)
224 PF10723 RepB-RCR_reg: Replica 22.2 1.2E+02 0.0027 18.5 2.8 22 80-101 54-75 (84)
225 COG1889 NOP1 Fibrillarin-like 22.2 1.1E+02 0.0025 22.3 2.9 48 5-58 75-124 (231)
226 cd03317 NAAAR N-acylamino acid 22.2 3.1E+02 0.0066 21.1 5.6 52 12-65 232-286 (354)
227 cd08613 GDPD_GDE4_like_1 Glyce 22.0 2.9E+02 0.0063 21.4 5.3 51 35-85 237-291 (309)
228 PRK13908 putative recombinatio 22.0 1.5E+02 0.0033 21.3 3.5 49 94-142 152-201 (204)
229 PF01081 Aldolase: KDPG and KH 22.0 75 0.0016 22.7 2.0 31 95-125 91-121 (196)
230 PRK14460 ribosomal RNA large s 22.0 3.9E+02 0.0085 20.9 6.3 22 48-69 276-299 (354)
231 TIGR01579 MiaB-like-C MiaB-lik 21.9 2.7E+02 0.006 22.0 5.4 72 47-125 234-314 (414)
232 PRK14465 ribosomal RNA large s 21.8 3.9E+02 0.0085 20.9 6.1 18 49-66 275-294 (342)
233 TIGR01329 cysta_beta_ly_E cyst 21.7 4E+02 0.0086 20.8 6.7 55 13-68 114-171 (378)
234 COG0289 DapB Dihydrodipicolina 21.6 1.7E+02 0.0036 22.2 3.8 41 2-42 87-127 (266)
235 PF04358 DsrC: DsrC like prote 21.6 1.3E+02 0.0028 19.4 2.9 30 115-144 25-54 (109)
236 PRK11579 putative oxidoreducta 21.4 3.2E+02 0.0069 20.9 5.6 39 48-91 78-116 (346)
237 TIGR00238 KamA family protein. 21.3 3.9E+02 0.0085 20.6 7.6 23 48-70 240-262 (331)
238 COG0673 MviM Predicted dehydro 21.3 3.6E+02 0.0078 20.2 6.7 96 4-105 23-143 (342)
239 cd00118 LysM Lysin domain, fou 21.2 1E+02 0.0022 14.5 2.1 19 79-97 8-26 (46)
240 smart00052 EAL Putative diguan 21.1 3E+02 0.0065 19.2 5.4 78 2-95 140-229 (241)
241 PF10281 Ish1: Putative stress 21.1 1.3E+02 0.0028 15.0 3.5 17 16-32 2-18 (38)
242 PF12551 PHBC_N: Poly-beta-hyd 20.9 84 0.0018 16.9 1.6 13 89-101 22-34 (46)
243 cd00947 TBP_aldolase_IIB Tagat 20.9 3.8E+02 0.0082 20.3 6.8 71 19-92 81-163 (276)
244 cd08562 GDPD_EcUgpQ_like Glyce 20.8 3.1E+02 0.0068 19.3 7.0 64 4-67 125-208 (229)
245 COG0626 MetC Cystathionine bet 20.8 4.5E+02 0.0097 21.1 7.1 67 4-70 122-191 (396)
246 PF01352 KRAB: KRAB box; Inte 20.7 74 0.0016 16.5 1.4 18 127-144 8-25 (41)
247 cd03314 MAL Methylaspartate am 20.7 2.5E+02 0.0054 22.2 4.9 52 13-66 266-320 (369)
248 PRK06943 adenosylmethionine--8 20.7 2.2E+02 0.0047 23.0 4.6 24 48-71 246-269 (453)
249 COG2102 Predicted ATPases of P 20.7 3.5E+02 0.0076 19.9 5.2 71 18-94 99-177 (223)
250 PF02679 ComA: (2R)-phospho-3- 20.7 1.4E+02 0.0031 22.2 3.3 47 18-64 22-73 (244)
251 PLN03244 alpha-amylase; Provis 20.6 81 0.0018 27.8 2.3 21 48-68 444-464 (872)
252 PRK10391 oriC-binding nucleoid 20.5 1.2E+02 0.0026 17.9 2.3 31 111-141 12-43 (71)
253 PRK08610 fructose-bisphosphate 20.5 3.9E+02 0.0085 20.3 6.6 71 19-92 89-171 (286)
254 cd02742 GH20_hexosaminidase Be 20.5 98 0.0021 23.5 2.5 17 48-64 75-91 (303)
255 PF00926 DHBP_synthase: 3,4-di 20.4 3.3E+02 0.0072 19.5 5.5 41 49-93 141-184 (194)
256 KOG2741 Dimeric dihydrodiol de 20.4 2.7E+02 0.0059 22.0 4.8 60 2-63 65-128 (351)
257 PF07637 PSD5: Protein of unkn 20.4 87 0.0019 17.8 1.8 21 123-143 13-33 (64)
258 PF12668 DUF3791: Protein of u 20.4 1.5E+02 0.0033 16.6 2.8 21 81-101 7-27 (62)
259 COG2307 Uncharacterized protei 20.3 58 0.0013 25.1 1.2 57 88-144 60-116 (313)
260 smart00657 RPOL4c DNA-directed 20.2 2.6E+02 0.0055 18.0 5.5 55 82-144 60-114 (118)
261 PF14542 Acetyltransf_CG: GCN5 20.2 82 0.0018 18.7 1.7 22 48-69 45-66 (78)
262 PRK10992 iron-sulfur cluster r 20.1 1.8E+02 0.0038 21.1 3.7 37 48-97 16-52 (220)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=6.4e-40 Score=241.66 Aligned_cols=141 Identities=43% Similarity=0.806 Sum_probs=135.1
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCcH
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNP 80 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~ 80 (146)
|++++++||||+||||||++++++++++.+++.|++||++||++.+++++++||+++||.+++|+||+.|+ .+++++
T Consensus 126 lE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~g~---~l~~~~ 202 (280)
T COG0656 126 LEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAKGG---KLLDNP 202 (280)
T ss_pred HHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccccc---ccccCh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999763 389999
Q ss_pred HHHHHHHHhCCCHHHHHHHhhhcCCcEEeecCCCHHHHHHhhcccCccCCHHHHHhhHhhhhhh
Q 032162 81 IVNTVAEKLGKSPAQVALRWGLQMGHSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQSL 144 (146)
Q Consensus 81 ~l~~~a~~~~~s~~~lal~~~l~~~~~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~~~ 144 (146)
.+.++|++||.|++|++|||.+++|+++||.+++++|+++|++++++.||+|||+.|+.+....
T Consensus 203 ~l~~Ia~k~g~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~ 266 (280)
T COG0656 203 VLAEIAKKYGKTPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGY 266 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999987654
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=3.7e-37 Score=227.54 Aligned_cols=144 Identities=51% Similarity=0.882 Sum_probs=135.7
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCcH
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNP 80 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~ 80 (146)
|++++++|++|+||||||+..++++++..++++|.++|++++++.++.++++||+++||-+.||+||++++....++.++
T Consensus 144 mE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~~~~ll~~~ 223 (300)
T KOG1577|consen 144 MEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGRGSDLLEDP 223 (300)
T ss_pred HHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCCccccccCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999885322578899
Q ss_pred HHHHHHHHhCCCHHHHHHHhhhcCCcEEeecCCCHHHHHHhhcccCccCCHHHHHhhHhhhhhh
Q 032162 81 IVNTVAEKLGKSPAQVALRWGLQMGHSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQSL 144 (146)
Q Consensus 81 ~l~~~a~~~~~s~~~lal~~~l~~~~~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~~~ 144 (146)
.+.++|++||.|++|++|||.+++|++|||.++|+++++||++.+++.||++|++.|+......
T Consensus 224 ~l~~iA~K~~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~ 287 (300)
T KOG1577|consen 224 VLKEIAKKYNKTPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNE 287 (300)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999766543
No 3
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=4e-35 Score=217.80 Aligned_cols=139 Identities=30% Similarity=0.536 Sum_probs=129.5
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCC-CceEEecccCccCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCc
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARI-PPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQN 79 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~-~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~ 79 (146)
|++++++||||+||||||++++++++++.++. +|+++|++||++++..+++++|+++||++++|+||++| .++.+
T Consensus 114 l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~G----~~~~~ 189 (267)
T PRK11172 114 LLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAYG----KVLKD 189 (267)
T ss_pred HHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCCC----cccCC
Confidence 57899999999999999999999999887654 78999999999999889999999999999999999887 46667
Q ss_pred HHHHHHHHHhCCCHHHHHHHhhhcCCcEEeecCCCHHHHHHhhcccCccCCHHHHHhhHhhhhh
Q 032162 80 PIVNTVAEKLGKSPAQVALRWGLQMGHSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQS 143 (146)
Q Consensus 80 ~~l~~~a~~~~~s~~~lal~~~l~~~~~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~~ 143 (146)
+.+.++|+++|+|++|+||+|+++++.++|+|+++++|+++|+++++++||+++++.|+++.+.
T Consensus 190 ~~l~~~a~~~~~s~aqval~w~l~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 PVIARIAAKHNATPAQVILAWAMQLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 8899999999999999999999999988999999999999999999999999999999988743
No 4
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=3.6e-34 Score=213.44 Aligned_cols=142 Identities=35% Similarity=0.672 Sum_probs=131.1
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCcH
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNP 80 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~ 80 (146)
|++|+++|+||+||||||++++++++...++++|.++|++|+++.+..+++++|+++||++++|+||++|+. ..+..+
T Consensus 123 l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~G~~--~~~~~~ 200 (275)
T PRK11565 123 MIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQGGK--GVFDQK 200 (275)
T ss_pred HHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCCCCc--ccccCH
Confidence 578999999999999999999999999888788999999999999888999999999999999999987631 245678
Q ss_pred HHHHHHHHhCCCHHHHHHHhhhcCCcEEeecCCCHHHHHHhhcccCccCCHHHHHhhHhhhhhh
Q 032162 81 IVNTVAEKLGKSPAQVALRWGLQMGHSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQSL 144 (146)
Q Consensus 81 ~l~~~a~~~~~s~~~lal~~~l~~~~~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~~~ 144 (146)
.+.++|+++|+|++|+||||+++++.++|||+++++|+++|+++++++|+++++++|+.+...+
T Consensus 201 ~l~~ia~~~g~s~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 201 VIRDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGK 264 (275)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccC
Confidence 9999999999999999999999999889999999999999999999999999999999987543
No 5
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=5.1e-34 Score=214.24 Aligned_cols=144 Identities=26% Similarity=0.437 Sum_probs=128.8
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCc---HHHHHHHHHcCceEEEeccCCCC---CCCC
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSA---KNTH 74 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~~~~~~~l~~g---g~~~ 74 (146)
|.+++++||||+||+|+++.+++.++...+++++.++|++||++.|+ .+++++|++.||++++|+||++| |++.
T Consensus 150 L~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~ 229 (336)
T KOG1575|consen 150 LTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYK 229 (336)
T ss_pred HHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcc
Confidence 56899999999999999999999999999988899999999999998 47999999999999999999988 4330
Q ss_pred ------------------CCCC--c------HHHHHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccC
Q 032162 75 ------------------RVLQ--N------PIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFD 126 (146)
Q Consensus 75 ------------------~~~~--~------~~l~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~ 126 (146)
..+. + +.+.++|+++|+|++|+||+|+++++ ++||||+++++|++||++|+.
T Consensus 230 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~ 309 (336)
T KOG1575|consen 230 LGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALS 309 (336)
T ss_pred cccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhh
Confidence 0000 0 35789999999999999999999998 789999999999999999999
Q ss_pred ccCCHHHHHhhHhhhhhh
Q 032162 127 WYIPEDLLAKFPEIEQSL 144 (146)
Q Consensus 127 ~~L~~~~~~~l~~~~~~~ 144 (146)
..||++++..|+++.+..
T Consensus 310 ~~Lt~e~~~~l~~~~~~~ 327 (336)
T KOG1575|consen 310 VKLTPEEIKELEEIIDKI 327 (336)
T ss_pred ccCCHHHHHHHHHhhccc
Confidence 999999999999987754
No 6
>PRK10376 putative oxidoreductase; Provisional
Probab=99.98 E-value=2.6e-31 Score=199.44 Aligned_cols=136 Identities=29% Similarity=0.420 Sum_probs=122.7
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCc-HHHHHHHHHcCceEEEeccCCCCCCCCCCCCc
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ-TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQN 79 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~ 79 (146)
|++|+++||||+||||||++++++++.+.+ +++++|++||++++. .+++++|+++||++++|+||+++ ..+..
T Consensus 150 l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g~----~~~~~ 223 (290)
T PRK10376 150 LAELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGGF----TPLQS 223 (290)
T ss_pred HHHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCCC----Chhhh
Confidence 578999999999999999999999998775 469999999999986 57999999999999999999743 23345
Q ss_pred HHHHHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccCccCCHHHHHhhHhhhh
Q 032162 80 PIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQ 142 (146)
Q Consensus 80 ~~l~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~ 142 (146)
+.+.++|+++|+|++|+|++|+++++ +++|+|+++++|+++|+++++++|++++++.|+++.+
T Consensus 224 ~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 224 STLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 78999999999999999999999874 6789999999999999999999999999999998765
No 7
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=99.97 E-value=3.6e-31 Score=202.96 Aligned_cols=143 Identities=25% Similarity=0.339 Sum_probs=121.5
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHH---hCCCCceEEecccCccCCc---HHHHHHHHHcCceEEEeccCCCCCC--
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLE---IARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSAKN-- 72 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~---~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~~~~~~~l~~gg~-- 72 (146)
|++|+++||||+||||||++++++++.+ ...+++.++|++||++++. .+++++|+++||++++|+||++|-+
T Consensus 153 l~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~ 232 (346)
T PRK09912 153 LAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTG 232 (346)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccC
Confidence 5789999999999999999999886654 3356789999999999985 4699999999999999999988722
Q ss_pred -CC-------C--------------CCC------cHHHHHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhh
Q 032162 73 -TH-------R--------------VLQ------NPIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENF 122 (146)
Q Consensus 73 -~~-------~--------------~~~------~~~l~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~ 122 (146)
+. + ++. .+.+.++|+++|+|++|+||+|+++++ .++|||+++++|+++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~ 312 (346)
T PRK09912 233 KYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENV 312 (346)
T ss_pred CCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHH
Confidence 10 0 000 146788999999999999999999998 67899999999999999
Q ss_pred cccC-ccCCHHHHHhhHhhhhh
Q 032162 123 DIFD-WYIPEDLLAKFPEIEQS 143 (146)
Q Consensus 123 ~a~~-~~L~~~~~~~l~~~~~~ 143 (146)
+++. ++|++++++.|+++.+.
T Consensus 313 ~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 313 QALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred hhhcCCCCCHHHHHHHHHhhCc
Confidence 9984 89999999999987653
No 8
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=99.97 E-value=6.2e-31 Score=199.21 Aligned_cols=141 Identities=33% Similarity=0.505 Sum_probs=124.6
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCc--HHHHHHHHHcCceEEEeccCCCC---CCCCC
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSA---KNTHR 75 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~~~~~~~l~~g---g~~~~ 75 (146)
|++|+++||||+||+||++.+++.++.+.+ .+++++|.+||+++++ .+++++|+++||++++|+||++| |++..
T Consensus 141 L~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 141 LDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 578999999999999999999999999986 5679999999999976 46999999999999999999998 44321
Q ss_pred -----------CCCc----------HHHHHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccCccCCHH
Q 032162 76 -----------VLQN----------PIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDWYIPED 132 (146)
Q Consensus 76 -----------~~~~----------~~l~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~~~L~~~ 132 (146)
.+.. ..++++|+++|+||+|+||+|++++| .++|+|+++++|+++|+++++..|+++
T Consensus 220 ~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~ 299 (316)
T COG0667 220 GPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEE 299 (316)
T ss_pred CcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHH
Confidence 1111 34889999999999999999999997 689999999999999999999999999
Q ss_pred HHHhhHhhhh
Q 032162 133 LLAKFPEIEQ 142 (146)
Q Consensus 133 ~~~~l~~~~~ 142 (146)
+++.|++...
T Consensus 300 ~~~~l~~~~~ 309 (316)
T COG0667 300 ELAALDEISA 309 (316)
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 9
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=99.97 E-value=4.4e-31 Score=200.36 Aligned_cols=140 Identities=26% Similarity=0.393 Sum_probs=119.6
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCC----CCceEEecccCccCCc---HHHHHHHHHcCceEEEeccCCCC---
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIAR----IPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSA--- 70 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~----~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~~~~~~~l~~g--- 70 (146)
|++|+++||||+||||||++++++++...+. ++|+++|++||+++++ .+++++|+++||++++|+||++|
T Consensus 135 L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Lt 214 (317)
T TIGR01293 135 MTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVS 214 (317)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccC
Confidence 5789999999999999999999988765432 5789999999999986 37999999999999999999887
Q ss_pred CCCCC--------------CCC-----c---------HHHHHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHH
Q 032162 71 KNTHR--------------VLQ-----N---------PIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKE 120 (146)
Q Consensus 71 g~~~~--------------~~~-----~---------~~l~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~ 120 (146)
|++.. .+. + +.++++|+++|+|++|+|++|+++++ +++|+|+++++|+++
T Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~e 294 (317)
T TIGR01293 215 GKYDSGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLME 294 (317)
T ss_pred CCCCCCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHH
Confidence 22210 000 1 45888999999999999999999997 478999999999999
Q ss_pred hhcccCc--cCCHHHHHhhHhh
Q 032162 121 NFDIFDW--YIPEDLLAKFPEI 140 (146)
Q Consensus 121 n~~a~~~--~L~~~~~~~l~~~ 140 (146)
|+++++. +||+++++.|+++
T Consensus 295 n~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 295 NLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHHHhhccCCCCHHHHHHHHhh
Confidence 9999987 9999999999875
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=99.97 E-value=3.1e-31 Score=197.84 Aligned_cols=141 Identities=36% Similarity=0.550 Sum_probs=117.0
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCc--HHHHHHHHHcCceEEEeccCCCCCCCCCC--
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSAKNTHRV-- 76 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~~~~~~~l~~gg~~~~~-- 76 (146)
|++|+++|+||+||||||+++.++.+.....++|+++|++||++++. .+++++|+++||++++|+|+++|.+....
T Consensus 122 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~ 201 (283)
T PF00248_consen 122 LEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKS 201 (283)
T ss_dssp HHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTT
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCcccccccc
Confidence 57999999999999999999999999777778999999999999443 68999999999999999999887321000
Q ss_pred --------------CCcHHHHHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccCccCCHHHHHhhHhh
Q 032162 77 --------------LQNPIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEI 140 (146)
Q Consensus 77 --------------~~~~~l~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~ 140 (146)
...+.+.++++++|+|++|+|++|+++++ .++|+|+++++|+++|+++++++||+++++.|+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~ 281 (283)
T PF00248_consen 202 PPPPPSRASLRDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQI 281 (283)
T ss_dssp TTTSTTTSGSSTHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTT
T ss_pred CCCcccccccchhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 23368999999999999999999999875 78999999999999999999999999999999987
Q ss_pred h
Q 032162 141 E 141 (146)
Q Consensus 141 ~ 141 (146)
.
T Consensus 282 ~ 282 (283)
T PF00248_consen 282 L 282 (283)
T ss_dssp H
T ss_pred h
Confidence 5
No 11
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=99.97 E-value=2.2e-30 Score=198.68 Aligned_cols=143 Identities=24% Similarity=0.249 Sum_probs=121.7
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhC---C-CCceEEecccCccCCc--HHHHHHHHHcCceEEEeccCCCC---C
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIA---R-IPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSA---K 71 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~---~-~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~~~~~~~l~~g---g 71 (146)
|++|+++||||+||+|||+.+.++++...+ . ..+.++|++||++++. .+++++|+++||++++|+||++| |
T Consensus 164 L~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg 243 (346)
T PRK10625 164 LAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTG 243 (346)
T ss_pred HHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccC
Confidence 578999999999999999999988776532 2 3578999999999876 57999999999999999999887 2
Q ss_pred CCC----------CCCC-------------cHHHHHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccC
Q 032162 72 NTH----------RVLQ-------------NPIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFD 126 (146)
Q Consensus 72 ~~~----------~~~~-------------~~~l~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~ 126 (146)
++. ..+. .+.++++|+++|+|++|+||+|+++++ .++|+|+++++|+++|+++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~en~~a~~ 323 (346)
T PRK10625 244 KYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIESLH 323 (346)
T ss_pred CCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHHHHHhhcc
Confidence 210 0111 146888999999999999999999998 358999999999999999999
Q ss_pred ccCCHHHHHhhHhhhhh
Q 032162 127 WYIPEDLLAKFPEIEQS 143 (146)
Q Consensus 127 ~~L~~~~~~~l~~~~~~ 143 (146)
++|++++++.|+++.+.
T Consensus 324 ~~L~~~~~~~l~~~~~~ 340 (346)
T PRK10625 324 LTLSEEVLAEIEAVHQV 340 (346)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999988753
No 12
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=99.97 E-value=4.6e-30 Score=191.69 Aligned_cols=140 Identities=41% Similarity=0.643 Sum_probs=123.8
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCcH--HHHHHHHHcCceEEEeccCCCCCCCCCCC-
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQT--KLQAFCKSKGVHLSGYSPLGSAKNTHRVL- 77 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~--~~~~~~~~~gi~~~~~~~l~~gg~~~~~~- 77 (146)
|++++++|+||+||||||+++.++++.+.+..+|+++|++||++++.. +++++|+++||++++|+||++|.......
T Consensus 133 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~ 212 (285)
T cd06660 133 LEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLP 212 (285)
T ss_pred HHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCC
Confidence 689999999999999999999999999887778999999999999985 49999999999999999998772211100
Q ss_pred --------CcHHHHHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccCccCCHHHHHhhHhh
Q 032162 78 --------QNPIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEI 140 (146)
Q Consensus 78 --------~~~~l~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~ 140 (146)
....+..++++++++++|+|++|+++++ .++|+|+++++|+++|+++...+||+++++.|+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 213 GAPPPEGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred CCCCChhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 0245789999999999999999999996 78899999999999999999899999999998763
No 13
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=99.96 E-value=1.3e-29 Score=181.99 Aligned_cols=142 Identities=23% Similarity=0.310 Sum_probs=127.2
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCc---HHHHHHHHHcCceEEEeccCCCCCCCCC--
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSAKNTHR-- 75 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~~~~~~~l~~gg~~~~-- 75 (146)
|..|.++||||++|||||+|.+++.+......+..+||+++|+++.. ++.+++|+++.|.+++||||++|+.|..
T Consensus 142 f~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~~ 221 (298)
T COG4989 142 FTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGDD 221 (298)
T ss_pred HHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCCc
Confidence 46899999999999999999999999999888899999999999987 6799999999999999999998854421
Q ss_pred CCC--cHHHHHHHHHhC-CCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccCccCCHHHHHhhHhhhh
Q 032162 76 VLQ--NPIVNTVAEKLG-KSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQ 142 (146)
Q Consensus 76 ~~~--~~~l~~~a~~~~-~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~ 142 (146)
.+. .+.+..+|.++| +|..+++++|++.+| ..||+|+.+++++++.++|.++.||.++|-+|..+..
T Consensus 222 ~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~ 293 (298)
T COG4989 222 KFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAI 293 (298)
T ss_pred chHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhc
Confidence 111 267899999999 799999999999999 5789999999999999999999999999999987763
No 14
>PLN02587 L-galactose dehydrogenase
Probab=99.96 E-value=3.2e-28 Score=184.46 Aligned_cols=142 Identities=23% Similarity=0.279 Sum_probs=116.9
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCC---CCceEEecccCccCCc-HHHHHHHHHcCceEEEeccCCCCCCCCC-
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIAR---IPPAVNQVECHPAWQQ-TKLQAFCKSKGVHLSGYSPLGSAKNTHR- 75 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~---~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~~~~~~~l~~gg~~~~- 75 (146)
|++|+++||||+||+|||++++++.+.+... +.+..+|..|++.++. .+++++|+++||++++|+||++|-+..+
T Consensus 137 l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~G~L~~~~ 216 (314)
T PLN02587 137 LQKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAMGLLTENG 216 (314)
T ss_pred HHHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhccccCCCC
Confidence 6799999999999999999998887775432 3455568899988765 5899999999999999999988722111
Q ss_pred --CCC--c-------HHHHHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccC----ccCCHHHHHhhH
Q 032162 76 --VLQ--N-------PIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFD----WYIPEDLLAKFP 138 (146)
Q Consensus 76 --~~~--~-------~~l~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~----~~L~~~~~~~l~ 138 (146)
.+. . +.+.++|+++++|++|+||+|++++| .++|+|+++++|+++|+++++ .+|+++++++|+
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~ 296 (314)
T PLN02587 217 PPEWHPAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVE 296 (314)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHH
Confidence 110 1 34678999999999999999999998 468999999999999999976 379999999998
Q ss_pred hhhh
Q 032162 139 EIEQ 142 (146)
Q Consensus 139 ~~~~ 142 (146)
++.+
T Consensus 297 ~~~~ 300 (314)
T PLN02587 297 AILA 300 (314)
T ss_pred Hhhc
Confidence 8764
No 15
>PRK14863 bifunctional regulator KidO; Provisional
Probab=99.96 E-value=1.5e-28 Score=184.55 Aligned_cols=136 Identities=19% Similarity=0.086 Sum_probs=115.3
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCc---HHHHHHHHHcCceEEEeccCCCCCCCCC--
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSAKNTHR-- 75 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~~~~~~~l~~gg~~~~-- 75 (146)
|++|+++||||+||||||+++++..+... .+|+++|++||+++++ .+++++|+++||++++|+||++|.++..
T Consensus 127 l~~l~~~Gkir~iGvSn~~~~~~~~~~~~--~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~ 204 (292)
T PRK14863 127 LQALKDQGLFAKIGVSAHASDDPVGVARR--FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD 204 (292)
T ss_pred HHHHHHcCCcceEeeeccCHHHHHHHHhc--CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc
Confidence 57899999999999999999998887643 4789999999999986 3599999999999999999988843311
Q ss_pred ----CCC-----cHHHHHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccCccCCHHHHHhhH
Q 032162 76 ----VLQ-----NPIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDWYIPEDLLAKFP 138 (146)
Q Consensus 76 ----~~~-----~~~l~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~ 138 (146)
.+. -..+.+++++++++++|+||+|+++++ .++|+|+++++|+++|+++.+.++++..+++|.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 205 RVPAQLKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred cCccchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhcc
Confidence 111 134566788889999999999999998 578999999999999999999899988887764
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.92 E-value=2.1e-24 Score=162.27 Aligned_cols=139 Identities=22% Similarity=0.250 Sum_probs=120.5
Q ss_pred CHhHHHcCCccEEEeCCC-CHHHHHHHHHhCCCCceEEecccCccCCc----HHHHHHHHHcCceEEEeccCCCCCCCCC
Q 032162 1 MEALYDSGKARAIGVSNF-SLKKLGDLLEIARIPPAVNQVECHPAWQQ----TKLQAFCKSKGVHLSGYSPLGSAKNTHR 75 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~----~~~~~~~~~~gi~~~~~~~l~~gg~~~~ 75 (146)
++++|++||||++|+|.| +++.+.+++.... ++++|++||.++.+ .+.+.+|.++|++++.|+|+.+|++
T Consensus 136 ~~kak~eGkIr~~GFSfHgs~e~~~~iv~a~~--~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l--- 210 (391)
T COG1453 136 LEKAKAEGKIRNAGFSFHGSTEVFKEIVDAYP--WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGL--- 210 (391)
T ss_pred HHHHHhcCcEEEeeecCCCCHHHHHHHHhcCC--cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCc---
Confidence 478999999999999999 5688888888764 79999999999876 3899999999999999999988742
Q ss_pred CC-CcHHHHHHHHHhC--CCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccCc--c-CCHHHHHhhHhhhhhh
Q 032162 76 VL-QNPIVNTVAEKLG--KSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDW--Y-IPEDLLAKFPEIEQSL 144 (146)
Q Consensus 76 ~~-~~~~l~~~a~~~~--~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~~--~-L~~~~~~~l~~~~~~~ 144 (146)
+. -++++.+++.+++ .||+.+|+||+++++ .++++|+++++|++||++.++. | ||++|...|.++.+..
T Consensus 211 ~~~vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~ 287 (391)
T COG1453 211 LYNVPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIY 287 (391)
T ss_pred ccCCCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHH
Confidence 22 3588999999875 689999999999999 5789999999999999999874 4 9999999988887654
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.75 E-value=1.6e-17 Score=120.87 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=105.5
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEe--cccCccCCc-HHHHHHHHHcCceEEEeccCCCCCC---CC
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQ--VECHPAWQQ-TKLQAFCKSKGVHLSGYSPLGSAKN---TH 74 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q--~~~~~~~~~-~~~~~~~~~~gi~~~~~~~l~~gg~---~~ 74 (146)
|+++|++||||+||||.|+.+.+.++.+......+++- .+|++.+.. -..+++.+.+|++|++-++++.|-+ ++
T Consensus 163 Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~AsalsmgLLt~~gp 242 (342)
T KOG1576|consen 163 LEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSMGLLTNQGP 242 (342)
T ss_pred HHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHHHHhhcCCC
Confidence 58999999999999999999999999977654555555 566665554 4788889999999999999988722 12
Q ss_pred CCCCc---------HHHHHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccCccCCH
Q 032162 75 RVLQN---------PIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDWYIPE 131 (146)
Q Consensus 75 ~~~~~---------~~l~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~~~L~~ 131 (146)
+-..+ ..-.++|++.|++.+.+|++|.++.+ .++++|++|+++++.|+++-...||.
T Consensus 243 ~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 243 PPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 22221 34456778889999999999999987 78899999999999999986557777
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.70 E-value=3e-08 Score=71.60 Aligned_cols=67 Identities=31% Similarity=0.441 Sum_probs=62.7
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCc-HHHHHHHHHcCceEEEeccC
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ-TKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~~~~~~~l 67 (146)
|++++.+|+|..||||.|+..+++++++.+.++|.++|+++.-+..- +++..+|.+|+|.+...+-.
T Consensus 162 LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHsDP 229 (285)
T KOG3023|consen 162 LEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHSDP 229 (285)
T ss_pred HHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecCCc
Confidence 68999999999999999999999999999999999999999988875 79999999999999998655
No 19
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=93.83 E-value=0.98 Score=33.62 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=67.2
Q ss_pred HcCCccEEEe-CCCCHHHHHHHHHhCCCCceEEecccCccCCc--HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHH
Q 032162 6 DSGKARAIGV-SNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIV 82 (146)
Q Consensus 6 ~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l 82 (146)
++|+. -+|+ ...+...+-++...+++++.++-.+..+++.. ..++..|+..|+..+.+-|-..
T Consensus 15 ~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~------------- 80 (256)
T PRK10558 15 AAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE------------- 80 (256)
T ss_pred HcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC-------------
Confidence 44774 4554 33433455566666778888888999988876 5789999999999999877632
Q ss_pred HHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccCc
Q 032162 83 NTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDW 127 (146)
Q Consensus 83 ~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~~ 127 (146)
...+...+..| .+++|-..|.++.++.+++..+
T Consensus 81 ------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 ------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred ------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 13445566666 4567788888888887777665
No 20
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=93.14 E-value=1.8 Score=32.45 Aligned_cols=96 Identities=11% Similarity=0.096 Sum_probs=68.4
Q ss_pred HcCCccEEEe-CCCCHHHHHHHHHhCCCCceEEecccCccCCc--HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHH
Q 032162 6 DSGKARAIGV-SNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIV 82 (146)
Q Consensus 6 ~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l 82 (146)
++|+.- +|+ ...+...+-+++..+++++.++-.+..+++.. ..++..++..|+..+++-|-..
T Consensus 14 ~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~------------- 79 (267)
T PRK10128 14 RKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS------------- 79 (267)
T ss_pred HcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC-------------
Confidence 447653 443 33333445555566778888889999998876 4788899999999999877521
Q ss_pred HHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccCc
Q 032162 83 NTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDW 127 (146)
Q Consensus 83 ~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~~ 127 (146)
...+..+|..| .+++|-..|+++.++.+++..+
T Consensus 80 ------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 ------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred ------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 23456777777 4677888888888888888776
No 21
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=92.77 E-value=2 Score=31.86 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=67.4
Q ss_pred HHcCCccEEEe-CCCCHHHHHHHHHhCCCCceEEecccCccCCc--HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHH
Q 032162 5 YDSGKARAIGV-SNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPI 81 (146)
Q Consensus 5 ~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~ 81 (146)
.++|+. .+|+ ++.+...+-+++..+++++.++-.+..+++.. ..++..++..|+..+.+-|-..
T Consensus 7 l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~------------ 73 (249)
T TIGR03239 7 LLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE------------ 73 (249)
T ss_pred HHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC------------
Confidence 344764 3553 34443455555666778888999999988876 5788889999999999877632
Q ss_pred HHHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccCc
Q 032162 82 VNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDW 127 (146)
Q Consensus 82 l~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~~ 127 (146)
...++.+|..| .+++|-..|.++.++.+++..+
T Consensus 74 -------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 -------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred -------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 12345566666 4567788888888888877665
No 22
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=91.42 E-value=0.95 Score=32.27 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=57.6
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCc-------HHHHHHHHHcCceEEEeccCCCCC
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ-------TKLQAFCKSKGVHLSGYSPLGSAK 71 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-------~~~~~~~~~~gi~~~~~~~l~~gg 71 (146)
|+++.+-|+=--+++.||.....+.-+-..+-.|.+-..+|.-.+.. .+..++|++.|+.+.-..++.+++
T Consensus 95 L~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 95 LEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 46778888888899999998888777665555678888888766543 689999999999999999997763
No 23
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=90.46 E-value=2.3 Score=32.15 Aligned_cols=67 Identities=9% Similarity=0.130 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCC------CHHHHHHHhhhcCC-cEEeecCCCHHHHHH
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGK------SPAQVALRWGLQMG-HSVLPKSANEARLKE 120 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~------s~~~lal~~~l~~~-~~~i~g~~~~~~l~~ 120 (146)
..+.+++++-++-++.-+.-++ +..+|.++|.+++. ++.++-..|+.... +-+..|+|+|+.+-+
T Consensus 200 ~a~~~la~~vD~miVVGg~nSs--------NT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~ 271 (280)
T TIGR00216 200 DAVKELAPEVDLMIVIGGKNSS--------NTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIE 271 (280)
T ss_pred HHHHHHHhhCCEEEEECCCCCc--------hHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHH
Confidence 5799999999988887333322 34789999999874 66788889988766 567889999998765
Q ss_pred hh
Q 032162 121 NF 122 (146)
Q Consensus 121 n~ 122 (146)
.+
T Consensus 272 eV 273 (280)
T TIGR00216 272 EV 273 (280)
T ss_pred HH
Confidence 54
No 24
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=89.71 E-value=3.3 Score=31.36 Aligned_cols=98 Identities=10% Similarity=0.078 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHhCCCCceEEecccCccC-----CcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhC
Q 032162 16 SNFSLKKLGDLLEIARIPPAVNQVECHPAW-----QQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLG 90 (146)
Q Consensus 16 S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~-----~~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~ 90 (146)
++.+.+.+.++.+...-++.-+.+ +|-++ |+..+.+++++-++-++.-+.-++ +...|.++|.+++
T Consensus 165 TT~~~~~~~~iv~~l~~~~~~~~v-~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss--------NT~rL~eia~~~~ 235 (281)
T PRK12360 165 TTIIPELWEDILNVIKLKSKELVF-FNTICSATKKRQESAKELSKEVDVMIVIGGKHSS--------NTQKLVKICEKNC 235 (281)
T ss_pred CCCcHHHHHHHHHHHHHhCccccc-CCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCc--------cHHHHHHHHHHHC
Confidence 345666666665543311111111 33322 225789999999988887333322 3578999999987
Q ss_pred C------CHHHHHHHhhhcCC-cEEeecCCCHHHHHHhh
Q 032162 91 K------SPAQVALRWGLQMG-HSVLPKSANEARLKENF 122 (146)
Q Consensus 91 ~------s~~~lal~~~l~~~-~~~i~g~~~~~~l~~n~ 122 (146)
. ++.++--.|+.... +-+..|+|+|+.+-+.+
T Consensus 236 ~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 236 PNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred CCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 4 56788888998776 56788999999876654
No 25
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=89.63 E-value=3.2 Score=31.65 Aligned_cols=106 Identities=12% Similarity=0.169 Sum_probs=66.6
Q ss_pred CccEEEeCCCCHHHHHHHHHhCCCC-ceEEecccCccC-----CcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHH
Q 032162 9 KARAIGVSNFSLKKLGDLLEIARIP-PAVNQVECHPAW-----QQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIV 82 (146)
Q Consensus 9 ~ir~iGvS~~~~~~l~~~~~~~~~~-~~~~q~~~~~~~-----~~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l 82 (146)
++-.+-=++++.+.++++.+...-+ +...-..+|-++ |+..+.+++++.+.-++.-++-.+ +...|
T Consensus 157 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss--------NT~kL 228 (298)
T PRK01045 157 KLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSS--------NSNRL 228 (298)
T ss_pred cEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCc--------cHHHH
Confidence 3333334456677666665544311 222111233222 225789999999988887333322 34789
Q ss_pred HHHHHHhCC------CHHHHHHHhhhcCC-cEEeecCCCHHHHHHhh
Q 032162 83 NTVAEKLGK------SPAQVALRWGLQMG-HSVLPKSANEARLKENF 122 (146)
Q Consensus 83 ~~~a~~~~~------s~~~lal~~~l~~~-~~~i~g~~~~~~l~~n~ 122 (146)
.++|++++. +..++-..|+.... +-+..|+|+|+.+-+.+
T Consensus 229 ~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 229 REVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 999999874 66788889997666 56788999999775554
No 26
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=88.91 E-value=0.27 Score=38.58 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=34.9
Q ss_pred cCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCc-cCC-cHHHHHHHHHcCce
Q 032162 7 SGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHP-AWQ-QTKLQAFCKSKGVH 60 (146)
Q Consensus 7 ~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~-~~~-~~~~~~~~~~~gi~ 60 (146)
-|+|||+||--|+.+.+.++....+. -+..+.+..+ +++ ++.++..|++.||.
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e-~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENE-KDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccH-HHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 39999999999999999998765442 1333333332 233 26777777777654
No 27
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=87.54 E-value=4 Score=30.94 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCC------CHHHHHHHhhhcCC-cEEeecCCCHHHHHH
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGK------SPAQVALRWGLQMG-HSVLPKSANEARLKE 120 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~------s~~~lal~~~l~~~-~~~i~g~~~~~~l~~ 120 (146)
..+.+.+.+-++-++.-++-++ +..+|.++|++.|. ++.++=..|+.... +.+-.|+|+|+.+-+
T Consensus 204 ~Avk~la~~~Dl~iVVG~~nSS--------Ns~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~ 275 (294)
T COG0761 204 DAVKELAPEVDLVIVVGSKNSS--------NSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQ 275 (294)
T ss_pred HHHHHHhhcCCEEEEECCCCCc--------cHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHH
Confidence 5688888888888888666644 36889999999987 55677788888866 556789999998887
Q ss_pred hhc
Q 032162 121 NFD 123 (146)
Q Consensus 121 n~~ 123 (146)
++-
T Consensus 276 ~Vi 278 (294)
T COG0761 276 EVI 278 (294)
T ss_pred HHH
Confidence 764
No 28
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=87.44 E-value=9.8 Score=28.16 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=65.5
Q ss_pred HHHcCCccEEEe--CCCCHHHHHHHHHhCCCCceEEecccCccCCc--HHHHHHHHHcCceEEEeccCCCCCCCCCCCCc
Q 032162 4 LYDSGKARAIGV--SNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQN 79 (146)
Q Consensus 4 l~~~G~ir~iGv--S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~ 79 (146)
..++|+. -+|+ +..++..++.+ ..+++++.++-.+.++++.+ ..++..++..|+.++.+-|-..
T Consensus 6 ~l~~g~~-~~g~~~~~~~p~~~e~~-~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~---------- 73 (249)
T TIGR02311 6 ALKEGQP-QIGLWLGLADPYAAEIC-AGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD---------- 73 (249)
T ss_pred HHHCCCc-eEEEEEeCCCcHHHHHH-HhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC----------
Confidence 3455775 3443 33455555554 44667788888888887554 3577777778888888765421
Q ss_pred HHHHHHHHHhCCCHHHHHHHhhhcCC--cEEeecCCCHHHHHHhhcccCc
Q 032162 80 PIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDW 127 (146)
Q Consensus 80 ~~l~~~a~~~~~s~~~lal~~~l~~~--~~~i~g~~~~~~l~~n~~a~~~ 127 (146)
+ ..++.++..| .+++|-..|++++++-+++..+
T Consensus 74 -------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 -------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 1456777777 4678888999999888888775
No 29
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=86.84 E-value=3.2 Score=31.39 Aligned_cols=107 Identities=11% Similarity=0.143 Sum_probs=63.3
Q ss_pred CCccEEEeCCCCHHHHHHHHHhCC-CCceEEecccCccCC-----cHHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHH
Q 032162 8 GKARAIGVSNFSLKKLGDLLEIAR-IPPAVNQVECHPAWQ-----QTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPI 81 (146)
Q Consensus 8 G~ir~iGvS~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~-----~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~ 81 (146)
.++-.+-=++++.+...++.+... .-|...-..+|-+.. +..+.+++++-++-++.-++-+ -+...
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~S--------sNT~k 226 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNS--------SNTRK 226 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT---------HHHHH
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCC--------ccHHH
Confidence 355556666777777666655443 112333233444433 2578899999897777732221 12478
Q ss_pred HHHHHHHhCC------CHHHHHHHhhhcCC-cEEeecCCCHHHHHHhh
Q 032162 82 VNTVAEKLGK------SPAQVALRWGLQMG-HSVLPKSANEARLKENF 122 (146)
Q Consensus 82 l~~~a~~~~~------s~~~lal~~~l~~~-~~~i~g~~~~~~l~~n~ 122 (146)
|.++|++++. ++.++-..|+.... +-+..|+|+|+.+-+.+
T Consensus 227 L~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 227 LAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 9999999875 66889999998877 56788999999887654
No 30
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=86.32 E-value=6.7 Score=28.71 Aligned_cols=74 Identities=12% Similarity=0.107 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHhCCCCceEE--ecccCccCCc-----HHHHHHHHHcCceEEEeccCCCC-CCCCCC-CCc-----HHHH
Q 032162 18 FSLKKLGDLLEIARIPPAVN--QVECHPAWQQ-----TKLQAFCKSKGVHLSGYSPLGSA-KNTHRV-LQN-----PIVN 83 (146)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~--q~~~~~~~~~-----~~~~~~~~~~gi~~~~~~~l~~g-g~~~~~-~~~-----~~l~ 83 (146)
.++.+++.+.+.+++.+.++ -.+||-|+.. .++.+|++.-|-.-+.+.|+..| +..... ..+ +.++
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLk 128 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGTAVRREDLVEALKALK 128 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCcccchHHHHHHHHHhh
Confidence 46888999999888644444 2367777754 47999999999999999999775 111000 001 5566
Q ss_pred HHHHHhCC
Q 032162 84 TVAEKLGK 91 (146)
Q Consensus 84 ~~a~~~~~ 91 (146)
.+.++||+
T Consensus 129 pil~~~gi 136 (272)
T COG4130 129 PILDEYGI 136 (272)
T ss_pred HHHHHhCc
Confidence 77777765
No 31
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=82.24 E-value=8.4 Score=32.60 Aligned_cols=67 Identities=9% Similarity=0.072 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCC------CHHHHHHHhhhcCC-cEEeecCCCHHHHHH
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGK------SPAQVALRWGLQMG-HSVLPKSANEARLKE 120 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~------s~~~lal~~~l~~~-~~~i~g~~~~~~l~~ 120 (146)
..+.++|.+.++-++.-++-.+ +...|.++|.+.|. ++.++.-.|+.... +-+..|+|+|+.+-+
T Consensus 198 ~a~~~la~~~d~~~vvGg~~Ss--------Nt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~ 269 (647)
T PRK00087 198 EAAEKLAKKVDVMIVVGGKNSS--------NTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIE 269 (647)
T ss_pred HHHHHHHhhCCEEEEECCCCCc--------cHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHH
Confidence 5789999998988887333322 35789999998874 56788888988766 567789999997655
Q ss_pred hh
Q 032162 121 NF 122 (146)
Q Consensus 121 n~ 122 (146)
.+
T Consensus 270 ~v 271 (647)
T PRK00087 270 EV 271 (647)
T ss_pred HH
Confidence 43
No 32
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=81.06 E-value=4.6 Score=30.49 Aligned_cols=50 Identities=20% Similarity=0.393 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEeccCCC
Q 032162 18 FSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGS 69 (146)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l~~ 69 (146)
|+...+.++.+..+++..++-+.||+.+. ++.+||++.|+.++..-|+..
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 45666777778888998999999966554 899999999999999989854
No 33
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=75.39 E-value=30 Score=26.02 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=53.2
Q ss_pred CceEEecccCccCCc---------------------------HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHH
Q 032162 33 PPAVNQVECHPAWQQ---------------------------TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTV 85 (146)
Q Consensus 33 ~~~~~q~~~~~~~~~---------------------------~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~ 85 (146)
-|.+.+..||+..+. .++.++|+++||..+-..+... .+++++++
T Consensus 95 ~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt--------~~~rl~~i 166 (265)
T COG0159 95 VPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTT--------PDERLKKI 166 (265)
T ss_pred CCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCC--------CHHHHHHH
Confidence 478888888875421 3577778888887777665532 35666666
Q ss_pred HHHh----------CCCH--------HHHHHHhhhcC---CcEEeecCCCHHHHHHhhcccC
Q 032162 86 AEKL----------GKSP--------AQVALRWGLQM---GHSVLPKSANEARLKENFDIFD 126 (146)
Q Consensus 86 a~~~----------~~s~--------~~lal~~~l~~---~~~~i~g~~~~~~l~~n~~a~~ 126 (146)
++.- |+|- ..-.++.+.++ |+.+=.|.++++|+++-.++.+
T Consensus 167 ~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~AD 228 (265)
T COG0159 167 AEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEAAD 228 (265)
T ss_pred HHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHhCC
Confidence 6543 2222 12234444443 2444458899999988888755
No 34
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=72.34 E-value=6.8 Score=28.96 Aligned_cols=66 Identities=17% Similarity=0.350 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCCH---------HHHHHHhhhcCC--cEEeecCCCHH
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSP---------AQVALRWGLQMG--HSVLPKSANEA 116 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~---------~~lal~~~l~~~--~~~i~g~~~~~ 116 (146)
.++.++|+++||.+++ +|+. .+.+. +..++++.. .--.|+.+.+.+ +..=.|+++.+
T Consensus 59 ~~L~~~~~~~gi~f~s-tpfd----------~~s~d-~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~ 126 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPFD----------EESVD-FLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLE 126 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-S----------HHHHH-HHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HH
T ss_pred HHHHHHHHHcCCEEEE-CCCC----------HHHHH-HHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHH
Confidence 5799999999999998 4552 22222 334444322 113566666666 44446999999
Q ss_pred HHHHhhccc
Q 032162 117 RLKENFDIF 125 (146)
Q Consensus 117 ~l~~n~~a~ 125 (146)
++++.++.+
T Consensus 127 EI~~Av~~~ 135 (241)
T PF03102_consen 127 EIERAVEVL 135 (241)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998887
No 35
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=70.16 E-value=11 Score=29.18 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCCHHH---------HHHHhhhcCC--cEEeecCCCHH
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSPAQ---------VALRWGLQMG--HSVLPKSANEA 116 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~~~---------lal~~~l~~~--~~~i~g~~~~~ 116 (146)
..+.++|++.||.+++ +|+... -..+..+.+++... =.|.|+.+.+ ...-.|+++.+
T Consensus 93 ~~Lke~a~~~Gi~~~S-SPfd~~-----------svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ 160 (347)
T COG2089 93 AQLKEYARKRGIIFFS-SPFDLT-----------AVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIE 160 (347)
T ss_pred HHHHHHHHHcCeEEEe-cCCCHH-----------HHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHH
Confidence 3689999999999887 677432 12222333332211 1355555544 44456888888
Q ss_pred HHHHhhccc
Q 032162 117 RLKENFDIF 125 (146)
Q Consensus 117 ~l~~n~~a~ 125 (146)
.+++.++.+
T Consensus 161 ei~~av~~~ 169 (347)
T COG2089 161 EIEEAVAIL 169 (347)
T ss_pred HHHHHHHHH
Confidence 888777654
No 36
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=68.11 E-value=65 Score=26.32 Aligned_cols=66 Identities=11% Similarity=0.067 Sum_probs=36.0
Q ss_pred HhHHHcCCccEEEeCC----CCHHHHHHHHHhC---C-CCce-EEecccCccCCcHHHHHHHHHcCceEEEeccC
Q 032162 2 EALYDSGKARAIGVSN----FSLKKLGDLLEIA---R-IPPA-VNQVECHPAWQQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 2 ~~l~~~G~ir~iGvS~----~~~~~l~~~~~~~---~-~~~~-~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l 67 (146)
+.++++..++.+-++. .+.+.+.++.+.. + .++. ..+...+.+.++.++++..++.|+..+..+.=
T Consensus 232 ~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiE 306 (497)
T TIGR02026 232 EWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTE 306 (497)
T ss_pred HHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccc
Confidence 3455555577776652 2444444443321 1 2221 13444455545678899999998876665433
No 37
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=66.60 E-value=24 Score=26.53 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=8.3
Q ss_pred HHHHHHHHcC----ceEEEe
Q 032162 49 KLQAFCKSKG----VHLSGY 64 (146)
Q Consensus 49 ~~~~~~~~~g----i~~~~~ 64 (146)
+++...++.+ +.++.|
T Consensus 83 el~~~~r~~~~~~Pivlm~Y 102 (265)
T COG0159 83 ELVEEIRAKGVKVPIVLMTY 102 (265)
T ss_pred HHHHHHHhcCCCCCEEEEEe
Confidence 5555555443 445554
No 38
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=64.92 E-value=11 Score=21.69 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCHHHHHHHhhh
Q 032162 81 IVNTVAEKLGKSPAQVALRWGL 102 (146)
Q Consensus 81 ~l~~~a~~~~~s~~~lal~~~l 102 (146)
.+-+||+.+|.++.+.|..|..
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4788999999999999999963
No 39
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=61.58 E-value=28 Score=21.04 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=37.3
Q ss_pred CHhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEec
Q 032162 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYS 65 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~ 65 (146)
++++++.|++. ...++..+.++..+.+..++-..-+. +....+.++|++++|.++-+.
T Consensus 3 ~~~~~ragkl~------~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV------IGTKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE------EcHHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 35667777643 24566667776666555555555444 223678999999999987764
No 40
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=59.85 E-value=18 Score=28.09 Aligned_cols=66 Identities=18% Similarity=0.360 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCCHHHH---------HHHhhhcCC--cEEeecCCCHH
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSPAQV---------ALRWGLQMG--HSVLPKSANEA 116 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~~~l---------al~~~l~~~--~~~i~g~~~~~ 116 (146)
..+.++|++.||.+++ +|+. ...+. +..++|+...++ .|+.+-+.+ +..=.|+++.+
T Consensus 79 ~~L~~~~~~~Gi~~~s-tpfd----------~~svd-~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~ 146 (329)
T TIGR03569 79 RELKEYCESKGIEFLS-TPFD----------LESAD-FLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLE 146 (329)
T ss_pred HHHHHHHHHhCCcEEE-EeCC----------HHHHH-HHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHH
Confidence 4799999999999998 3542 22222 223344333221 244444444 33334777777
Q ss_pred HHHHhhccc
Q 032162 117 RLKENFDIF 125 (146)
Q Consensus 117 ~l~~n~~a~ 125 (146)
.+++.++.+
T Consensus 147 Ei~~Av~~i 155 (329)
T TIGR03569 147 EIEAAVGVL 155 (329)
T ss_pred HHHHHHHHH
Confidence 777666554
No 41
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=57.65 E-value=37 Score=27.03 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHhCCC-CceEEecccCccCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCCH
Q 032162 17 NFSLKKLGDLLEIARI-PPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSP 93 (146)
Q Consensus 17 ~~~~~~l~~~~~~~~~-~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~ 93 (146)
..+++.++..++.+.. +|-++-..... .-..+...|+++|..+++++|..-+ .-..+...+.++|+.+
T Consensus 200 ~kD~eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Din-------~ak~Ln~kL~~~Gv~~ 268 (389)
T TIGR00381 200 EKDPLVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDIN-------MQKTLNRYLLKRGLMP 268 (389)
T ss_pred cCCHHHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcHH-------HHHHHHHHHHHcCCCH
Confidence 3578889988888764 55555443332 2258999999999999999988433 1233444444566654
No 42
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=57.43 E-value=24 Score=22.15 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHhCCCCceEEecccCcc---CCcHHHHHHHHHcCceEEEecc
Q 032162 16 SNFSLKKLGDLLEIARIPPAVNQVECHPA---WQQTKLQAFCKSKGVHLSGYSP 66 (146)
Q Consensus 16 S~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~~~~~~~ 66 (146)
|.++...+.++++...+ +++|+....+ .....+.++|+++|+.++..+.
T Consensus 3 ~~~~~~~~~~li~~~a~--d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAV--DIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSC--SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCC--CEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 56788889898886544 7788776543 2236899999999999999886
No 43
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=56.26 E-value=40 Score=22.21 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=39.6
Q ss_pred ccEEEeCCC---CHHHHHHHHHhCCCCceEEec--ccCccCCcHHHHHHHHHcCceEEEeccCCC
Q 032162 10 ARAIGVSNF---SLKKLGDLLEIARIPPAVNQV--ECHPAWQQTKLQAFCKSKGVHLSGYSPLGS 69 (146)
Q Consensus 10 ir~iGvS~~---~~~~l~~~~~~~~~~~~~~q~--~~~~~~~~~~~~~~~~~~gi~~~~~~~l~~ 69 (146)
|.-|-+++. +++.++..++.+. ++.++-+ .-..-.+.+.+...|++.||++-.|+.=+.
T Consensus 44 v~~W~v~~~~~Lt~e~f~~vl~~a~-~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst~AA 107 (127)
T COG3737 44 VCDWEVATLSDLTPEDFERVLAEAP-DVEILLIGTGARLRFPPPKLRAALKAAGISVEPMSTGAA 107 (127)
T ss_pred cccccccChhhCCHHHHHHHHhcCC-CceEEEEecCccccCCCHHHHHHHHHcCCccccccchhh
Confidence 555555553 5788888887765 2344433 333334457999999999999998876644
No 44
>TIGR03586 PseI pseudaminic acid synthase.
Probab=55.30 E-value=25 Score=27.23 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCceEEEeccC
Q 032162 48 TKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l 67 (146)
.++.++|++.||.+++ .|+
T Consensus 80 ~~L~~~~~~~Gi~~~s-tpf 98 (327)
T TIGR03586 80 KELFERAKELGLTIFS-SPF 98 (327)
T ss_pred HHHHHHHHHhCCcEEE-ccC
Confidence 3688999999999998 344
No 45
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=55.05 E-value=1.3e+02 Score=25.32 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCCceEEecccCccCCc--HHHHHHHHHcCceEEEeccCCCCCC
Q 032162 21 KKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSAKN 72 (146)
Q Consensus 21 ~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~~~~~~~l~~gg~ 72 (146)
...-+..+.+++++.+.-+.|..-... ..+.++|+++|+.+..-...+.||.
T Consensus 362 ~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~ 415 (557)
T PRK13505 362 ERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAKGGE 415 (557)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCc
Confidence 334444555667655555555433221 3588999999999998888888764
No 46
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=54.71 E-value=58 Score=22.15 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=39.6
Q ss_pred EEEeCCCC--HHHHHHHHHhCCCCceEEecccCccCCc-HHHHHHHHHcCceEEEeccCCCC
Q 032162 12 AIGVSNFS--LKKLGDLLEIARIPPAVNQVECHPAWQQ-TKLQAFCKSKGVHLSGYSPLGSA 70 (146)
Q Consensus 12 ~iGvS~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~~~~~~~l~~g 70 (146)
-+|...|+ ...+..++..+++ ++. |....+. .+.+..|.+.++.++.-|.+.++
T Consensus 19 k~GlDgHd~gakvia~~l~d~Gf--eVi---~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~ 75 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADAGF--EVI---NLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG 75 (143)
T ss_pred ccCccccccchHHHHHHHHhCCc--eEE---ecCCcCCHHHHHHHHHhcCCCEEEEEeccch
Confidence 45666664 6778888887765 443 3333444 68999999999999999999776
No 47
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=53.02 E-value=67 Score=23.96 Aligned_cols=29 Identities=24% Similarity=0.158 Sum_probs=21.9
Q ss_pred hHHHcCCccEEEeCCCCHHHHHHHHHhCC
Q 032162 3 ALYDSGKARAIGVSNFSLKKLGDLLEIAR 31 (146)
Q Consensus 3 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~~ 31 (146)
.+++-|.-+.+=+|+|+++.+..+.....
T Consensus 158 ~i~~~~~~~~vi~sSF~~~~l~~~~~~~p 186 (286)
T cd08606 158 KVFDYGAGRNIIFSSFTPDICILLSLKQP 186 (286)
T ss_pred HHHhcCCCCceEEEcCCHHHHHHHHhhCc
Confidence 34555666788899999999988876653
No 48
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=52.27 E-value=81 Score=23.11 Aligned_cols=48 Identities=10% Similarity=0.037 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCceEEec-----ccCccCCc-----------HHHHHHHHHcCceEEEeccC
Q 032162 20 LKKLGDLLEIARIPPAVNQV-----ECHPAWQQ-----------TKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~q~-----~~~~~~~~-----------~~~~~~~~~~gi~~~~~~~l 67 (146)
.+.+.+..+..++++..+.. ++|++..+ ...+++|+..|...+...|.
T Consensus 49 ~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~ 112 (275)
T PRK09856 49 IKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAA 112 (275)
T ss_pred HHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 45555566666665544432 23433221 24667777778777776664
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=51.96 E-value=16 Score=24.27 Aligned_cols=21 Identities=14% Similarity=0.468 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCceEEEeccCC
Q 032162 48 TKLQAFCKSKGVHLSGYSPLG 68 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~ 68 (146)
.++++.|++.||.+++|-.+.
T Consensus 47 ge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeee
Confidence 589999999999999998884
No 50
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=51.62 E-value=68 Score=24.22 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=22.3
Q ss_pred hHHHcCCccEEEeCCCCHHHHHHHHHhCC
Q 032162 3 ALYDSGKARAIGVSNFSLKKLGDLLEIAR 31 (146)
Q Consensus 3 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~~ 31 (146)
.+++.|..+.+=+++|+++.+..+.+...
T Consensus 172 ~i~~~~~~~~vv~~SF~~~~l~~l~~~~p 200 (293)
T cd08572 172 VVFEHAGGRRIIFSSFDPDICIMLRLKQN 200 (293)
T ss_pred HHHHhCCCCcEEEECCCHHHHHHHHhhCc
Confidence 34556777788899999999988876654
No 51
>PHA02128 hypothetical protein
Probab=51.55 E-value=46 Score=21.51 Aligned_cols=63 Identities=13% Similarity=0.239 Sum_probs=40.5
Q ss_pred HhHHHcCCccEEEeCCCCHHHHHHHH-----------------HhCC-CCceE-EecccCccCCc--HHHHHHHHHcCce
Q 032162 2 EALYDSGKARAIGVSNFSLKKLGDLL-----------------EIAR-IPPAV-NQVECHPAWQQ--TKLQAFCKSKGVH 60 (146)
Q Consensus 2 ~~l~~~G~ir~iGvS~~~~~~l~~~~-----------------~~~~-~~~~~-~q~~~~~~~~~--~~~~~~~~~~gi~ 60 (146)
+++..+|-+|-|-....+..++..+. +.+. +++-. -..+|.+-.+. .++++++..||+.
T Consensus 67 ne~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydwagthgve 146 (151)
T PHA02128 67 NEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDWAGTHGVE 146 (151)
T ss_pred HHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhhcccCceE
Confidence 46788899998887766655554443 2221 11111 13456555544 6999999999999
Q ss_pred EEEe
Q 032162 61 LSGY 64 (146)
Q Consensus 61 ~~~~ 64 (146)
++.|
T Consensus 147 fvim 150 (151)
T PHA02128 147 FVIM 150 (151)
T ss_pred EEEe
Confidence 8876
No 52
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=51.38 E-value=19 Score=22.89 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=17.3
Q ss_pred cHHHHHHHHHcCceEEEeccCCC
Q 032162 47 QTKLQAFCKSKGVHLSGYSPLGS 69 (146)
Q Consensus 47 ~~~~~~~~~~~gi~~~~~~~l~~ 69 (146)
..+.+.||+++|+.+..-.|-..
T Consensus 58 kE~Ai~yaer~G~~Y~V~~p~~r 80 (101)
T PF04800_consen 58 KEDAIAYAERNGWDYEVEEPKKR 80 (101)
T ss_dssp HHHHHHHHHHCT-EEEEE-STT-
T ss_pred HHHHHHHHHHcCCeEEEeCCCCC
Confidence 36899999999999999877643
No 53
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=51.37 E-value=15 Score=19.70 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=23.2
Q ss_pred HHHHHHHhCCCHHHHHHHhhhcCCcEEeecCCCHHHHHHhhcc
Q 032162 82 VNTVAEKLGKSPAQVALRWGLQMGHSVLPKSANEARLKENFDI 124 (146)
Q Consensus 82 l~~~a~~~~~s~~~lal~~~l~~~~~~i~g~~~~~~l~~n~~a 124 (146)
++++|+..|+|++.+...+. .+ .-++..+.+++.+.++.
T Consensus 2 i~dIA~~agvS~~TVSr~ln--~~--~~vs~~tr~rI~~~a~~ 40 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSRVLN--GP--PRVSEETRERILEAAEE 40 (46)
T ss_dssp HHHHHHHHTSSHHHHHHHHT--TC--SSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHh--CC--CCCCHHHHHHHHHHHHH
Confidence 67899999999997665443 22 22333444444444443
No 54
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=51.02 E-value=89 Score=22.35 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=22.1
Q ss_pred hHHHcCCccEEEeCCCCHHHHHHHHHhCC
Q 032162 3 ALYDSGKARAIGVSNFSLKKLGDLLEIAR 31 (146)
Q Consensus 3 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~~ 31 (146)
.+++.|....+=+|+|+++.+..+.+...
T Consensus 111 ~l~~~~~~~~v~i~SF~~~~l~~~~~~~p 139 (226)
T cd08568 111 IVEKFNALDRVIFSSFNHDALRELRKLDP 139 (226)
T ss_pred HHHHcCCCCcEEEEECCHHHHHHHHHhCC
Confidence 34556767788899999999988887654
No 55
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=50.43 E-value=70 Score=23.83 Aligned_cols=27 Identities=19% Similarity=0.098 Sum_probs=20.3
Q ss_pred HHcCCccEEEeCCCCHHHHHHHHHhCC
Q 032162 5 YDSGKARAIGVSNFSLKKLGDLLEIAR 31 (146)
Q Consensus 5 ~~~G~ir~iGvS~~~~~~l~~~~~~~~ 31 (146)
++.|.-+.+=+|+|+++.+..+.+...
T Consensus 165 ~~~~~~~~viisSF~~~~l~~l~~~~p 191 (282)
T cd08605 165 KQHAPGRRIMFSSFDPDAAVLLRALQS 191 (282)
T ss_pred HhcCCCCeEEEEeCCHHHHHHHHhcCc
Confidence 345666778899999999988876543
No 56
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=50.21 E-value=91 Score=22.20 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=26.6
Q ss_pred CCCHHHHHHHhhhcCC--cEEeecCC--CHHHHHHhhccc
Q 032162 90 GKSPAQVALRWGLQMG--HSVLPKSA--NEARLKENFDIF 125 (146)
Q Consensus 90 ~~s~~~lal~~~l~~~--~~~i~g~~--~~~~l~~n~~a~ 125 (146)
..|-.++|++|+.+++ .+.+.|++ +.+|.-.|+..+
T Consensus 71 D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 71 DTTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4566789999999886 45666654 778888888754
No 57
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=50.03 E-value=48 Score=24.84 Aligned_cols=17 Identities=6% Similarity=-0.003 Sum_probs=12.4
Q ss_pred ecCCCHHHHHHhhcc-cC
Q 032162 110 PKSANEARLKENFDI-FD 126 (146)
Q Consensus 110 ~g~~~~~~l~~n~~a-~~ 126 (146)
.|.++++|+++-.++ .+
T Consensus 209 FGI~~~e~~~~~~~~GAD 226 (263)
T CHL00200 209 FGISTSEQIKQIKGWNIN 226 (263)
T ss_pred CCcCCHHHHHHHHhcCCC
Confidence 478888888887766 44
No 58
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=49.14 E-value=51 Score=25.51 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=41.5
Q ss_pred CHHHHHHHHHhCCC-CceEEecccCccCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCCH
Q 032162 19 SLKKLGDLLEIARI-PPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSP 93 (146)
Q Consensus 19 ~~~~l~~~~~~~~~-~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~ 93 (146)
+++.++..++.++. +|-++-.... +-..+.+.|+++|..+++++|.. +-.-+.+...+.++|+++
T Consensus 138 D~evleaale~~~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~D-------ln~ak~L~~~l~~~Gi~~ 203 (319)
T PRK04452 138 DAEVLEKVAEAAEGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPLD-------INLAKQLNILLTELGVPR 203 (319)
T ss_pred CHHHHHHHHHHhCCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHHH-------HHHHHHHHHHHHHcCCCH
Confidence 78888888887763 3444433321 12579999999999999988662 111244555555666644
No 59
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=49.05 E-value=78 Score=22.79 Aligned_cols=17 Identities=12% Similarity=0.309 Sum_probs=14.5
Q ss_pred cHHHHHHHHHcCceEEE
Q 032162 47 QTKLQAFCKSKGVHLSG 63 (146)
Q Consensus 47 ~~~~~~~~~~~gi~~~~ 63 (146)
+++++++|+++|+.++.
T Consensus 90 ~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 90 TPELAKHAQDHGIPIIP 106 (204)
T ss_pred CHHHHHHHHHcCCcEEC
Confidence 47899999999988776
No 60
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=48.98 E-value=55 Score=23.40 Aligned_cols=51 Identities=6% Similarity=0.032 Sum_probs=37.3
Q ss_pred EEeCCCCHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEeccC
Q 032162 13 IGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 13 iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l 67 (146)
+-|=++.++.++.+++. +.++..+...+.. .+++++.++++|..++++-.-
T Consensus 75 lSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 75 LSIDTFNPEVAEAALKA-GADIINDISGFED---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp EEEEESSHHHHHHHHHH-TSSEEEETTTTSS---STTHHHHHHHHTSEEEEESES
T ss_pred EEEECCCHHHHHHHHHc-CcceEEecccccc---cchhhhhhhcCCCEEEEEecc
Confidence 34446889999999887 5554444444332 678999999999999998665
No 61
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=48.33 E-value=49 Score=18.54 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHH
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSPAQVA 97 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~~~la 97 (146)
+...+..+++||.+.+ +| +..|.+.+++.|+++.++.
T Consensus 13 p~~a~vf~~~gIDfCC-----gG--------~~~L~eA~~~~~ld~~~vl 49 (56)
T PF04405_consen 13 PRAARVFRKYGIDFCC-----GG--------NRSLEEACEEKGLDPEEVL 49 (56)
T ss_pred hHHHHHHHHcCCcccC-----CC--------CchHHHHHHHcCCCHHHHH
Confidence 5667778889998888 44 5678899999999988754
No 62
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=48.20 E-value=36 Score=21.23 Aligned_cols=44 Identities=27% Similarity=0.235 Sum_probs=26.4
Q ss_pred HhHHHcCCccEEE--------eCCC---CHHHHHHHHHhCCCCceEEecccCccCC
Q 032162 2 EALYDSGKARAIG--------VSNF---SLKKLGDLLEIARIPPAVNQVECHPAWQ 46 (146)
Q Consensus 2 ~~l~~~G~ir~iG--------vS~~---~~~~l~~~~~~~~~~~~~~q~~~~~~~~ 46 (146)
++|+++||++++- +|-| +.+.+.+++..... +-..+++..++.+
T Consensus 31 ~eLq~~Gk~~~lWRv~G~~~n~sifdv~s~~eLh~iL~sLPL-~p~m~i~VtpL~~ 85 (90)
T TIGR03221 31 QELQREGKWRHLWRVAGEYANYSIFDVESNDELHTLLSGLPL-FPYMDIEVTPLAR 85 (90)
T ss_pred HHHHhCCceEEEEEecCCceeEEEEEcCCHHHHHHHHHhCCC-CcceEeEEEEccC
Confidence 4789999999775 3444 46667777665543 2234444444443
No 63
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=47.33 E-value=99 Score=24.54 Aligned_cols=52 Identities=19% Similarity=0.140 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHhCC-C------CceEEecccCccCCc----------HHHHHHHHHcCceEEEeccCC
Q 032162 17 NFSLKKLGDLLEIAR-I------PPAVNQVECHPAWQQ----------TKLQAFCKSKGVHLSGYSPLG 68 (146)
Q Consensus 17 ~~~~~~l~~~~~~~~-~------~~~~~q~~~~~~~~~----------~~~~~~~~~~gi~~~~~~~l~ 68 (146)
|.++++.+++.+..+ . +..+|-++||+.... ....+.++++||.+..+...|
T Consensus 283 NDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G 351 (371)
T PRK14461 283 NDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERG 351 (371)
T ss_pred CCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCC
Confidence 455666666655443 2 356777777765321 245566667777777776653
No 64
>PLN02591 tryptophan synthase
Probab=47.00 E-value=39 Score=25.12 Aligned_cols=15 Identities=7% Similarity=-0.170 Sum_probs=12.2
Q ss_pred ecCCCHHHHHHhhcc
Q 032162 110 PKSANEARLKENFDI 124 (146)
Q Consensus 110 ~g~~~~~~l~~n~~a 124 (146)
.|.++++|+++-.+.
T Consensus 196 FGI~~~e~v~~~~~~ 210 (250)
T PLN02591 196 FGISKPEHAKQIAGW 210 (250)
T ss_pred CCCCCHHHHHHHHhc
Confidence 488889998887776
No 65
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=46.89 E-value=1e+02 Score=24.87 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=43.3
Q ss_pred hHHHcCCccEEEeCCCCHHHHHHHHHhCC------CCceEEecccCccCCc--HHHHHHHHHcCceEEEecc
Q 032162 3 ALYDSGKARAIGVSNFSLKKLGDLLEIAR------IPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSP 66 (146)
Q Consensus 3 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~~------~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~~~~~~~ 66 (146)
.+-+.|-...+|..+.+++++++.++..+ -++-+|-+ .++-++. .+.++.+.++|+.++.-+.
T Consensus 33 Avs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 33 AMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 34567889999999999999887765542 24455543 2222222 5789999999998776553
No 66
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=46.77 E-value=70 Score=22.95 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=34.7
Q ss_pred hHHHcCCcc-EEEeCCCCHHHHHHHHHhCCCCceEEecccCccC---CcHHHHHHHHHcCceEEEeccC
Q 032162 3 ALYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 3 ~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~~~~~~~l 67 (146)
+|.+...+. ..+=|.++...+..+.+... .+++|+..+.+- ....+..+|+++|+.++..+.+
T Consensus 139 ~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~--~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~ 205 (229)
T cd00308 139 ALRRRTGIPIAADESVTTVDDALEALELGA--VDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTL 205 (229)
T ss_pred HHHhhCCCCEEeCCCCCCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCC
Confidence 344444444 23334456666655554432 366666554432 1246777888888887776554
No 67
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=46.73 E-value=59 Score=25.22 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=34.0
Q ss_pred EEeCCCCHHHHHHHHHhCCCCceEE--------------ecccCccCC----c--HHHHHHHHHcCceEEEeccCCC
Q 032162 13 IGVSNFSLKKLGDLLEIARIPPAVN--------------QVECHPAWQ----Q--TKLQAFCKSKGVHLSGYSPLGS 69 (146)
Q Consensus 13 iGvS~~~~~~l~~~~~~~~~~~~~~--------------q~~~~~~~~----~--~~~~~~~~~~gi~~~~~~~l~~ 69 (146)
+--+.|++++..++.+.++.+..+. ...||..+. + .++.+.|+++||.+-.|-....
T Consensus 86 F~p~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d 162 (346)
T PF01120_consen 86 FNPTKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD 162 (346)
T ss_dssp ---TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS
T ss_pred CCcccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH
Confidence 3345788888888888887554444 223333222 2 5899999999999999866643
No 68
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=46.71 E-value=1.3e+02 Score=23.06 Aligned_cols=67 Identities=10% Similarity=0.021 Sum_probs=40.1
Q ss_pred HhHHHcCCccEEEeCC---------CCHHHHHHHHHhCCCCceEEecccCccC---Cc-HHHHHHHHHcCceEEEeccCC
Q 032162 2 EALYDSGKARAIGVSN---------FSLKKLGDLLEIARIPPAVNQVECHPAW---QQ-TKLQAFCKSKGVHLSGYSPLG 68 (146)
Q Consensus 2 ~~l~~~G~ir~iGvS~---------~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~-~~~~~~~~~~gi~~~~~~~l~ 68 (146)
+.+++-|.++.+.+.+ .+.+.++.+.+. +. ...+-++.+... .. ...+..+++.||.+....++.
T Consensus 160 ~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~-g~-~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl 237 (321)
T TIGR03822 160 ARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS-GK-TVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLL 237 (321)
T ss_pred HHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc-CC-cEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEe
Confidence 4567777776555533 344555555443 32 234444444221 11 367888889999999988887
Q ss_pred CC
Q 032162 69 SA 70 (146)
Q Consensus 69 ~g 70 (146)
+|
T Consensus 238 ~g 239 (321)
T TIGR03822 238 RG 239 (321)
T ss_pred CC
Confidence 76
No 69
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=46.40 E-value=11 Score=30.67 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=32.7
Q ss_pred CCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCcc-CC-cHHHHHHHHHcCc
Q 032162 8 GKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPA-WQ-QTKLQAFCKSKGV 59 (146)
Q Consensus 8 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~-~~-~~~~~~~~~~~gi 59 (146)
|.+|++|+..++.+.+.++...... -+.++.+..++ ++ +++++..|++.||
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~-~~~y~~~~~~~ldp~dp~v~~~A~~~gi 316 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENE-KDLYHRQLDVFLDPNDPEVIAQAKKDGI 316 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccc-hhHHHHhhceecCCCCHHHHHHHHHcCC
Confidence 5689999999999998888765542 13344444433 33 3566666666654
No 70
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=46.07 E-value=15 Score=20.80 Aligned_cols=14 Identities=14% Similarity=0.622 Sum_probs=10.3
Q ss_pred cHHHHHHHHHcCce
Q 032162 47 QTKLQAFCKSKGVH 60 (146)
Q Consensus 47 ~~~~~~~~~~~gi~ 60 (146)
++++++||+++|.-
T Consensus 29 ~~eV~~YC~~~GWI 42 (57)
T PF08727_consen 29 SPEVREYCEEQGWI 42 (57)
T ss_dssp -HHHHHHHHHHT--
T ss_pred CHHHHHHHHHCCcc
Confidence 36899999999843
No 71
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=45.62 E-value=53 Score=23.69 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=11.7
Q ss_pred CCCcHHHHHHHHHhCCCH
Q 032162 76 VLQNPIVNTVAEKLGKSP 93 (146)
Q Consensus 76 ~~~~~~l~~~a~~~~~s~ 93 (146)
....+.+.++|++||+..
T Consensus 171 mar~~~~~~fa~~h~l~~ 188 (203)
T COG0108 171 MARLPELEEFAKEHGLPV 188 (203)
T ss_pred ccChHHHHHHHHHcCCcE
Confidence 444566777777777644
No 72
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.40 E-value=65 Score=23.15 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.1
Q ss_pred cHHHHHHHHHcCceEEE
Q 032162 47 QTKLQAFCKSKGVHLSG 63 (146)
Q Consensus 47 ~~~~~~~~~~~gi~~~~ 63 (146)
+++++++|+++||.++.
T Consensus 86 ~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 86 TQELLAAANDSDVPLLP 102 (201)
T ss_pred CHHHHHHHHHcCCCEeC
Confidence 37899999999988776
No 73
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=45.28 E-value=79 Score=20.12 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHhCCCCceEEeccc--CccCCcHHHHHHHHHcCceEEEeccC
Q 032162 16 SNFSLKKLGDLLEIARIPPAVNQVEC--HPAWQQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 16 S~~~~~~l~~~~~~~~~~~~~~q~~~--~~~~~~~~~~~~~~~~gi~~~~~~~l 67 (146)
+..+++++..+.... +|+++-+.- +.....+++.++++++||++..|..-
T Consensus 37 ~~l~~~~l~~~~~~~--~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 37 SDLDPEALLPLLAED--RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred ccCCHHHHHHHHhhC--CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 345677777776653 355554432 22334578889999999998887544
No 74
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=45.14 E-value=8.2 Score=23.72 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=13.4
Q ss_pred HhHHHcCCccEEE-eCC
Q 032162 2 EALYDSGKARAIG-VSN 17 (146)
Q Consensus 2 ~~l~~~G~ir~iG-vS~ 17 (146)
++|.+.|-||++| |++
T Consensus 56 QdLv~~gfir~~g~vG~ 72 (84)
T cd04436 56 QDLLNQGFLRLVGGVGS 72 (84)
T ss_pred HHHHhCchHHHhcccCc
Confidence 4688999999999 665
No 75
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=45.05 E-value=40 Score=19.26 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=25.6
Q ss_pred CCHHHHHHhhcccCccCCHHHHHhhHhhhhhh
Q 032162 113 ANEARLKENFDIFDWYIPEDLLAKFPEIEQSL 144 (146)
Q Consensus 113 ~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~~~ 144 (146)
-+.+++.+.++......++++++..++..+.|
T Consensus 30 it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~F 61 (62)
T PF09336_consen 30 ITMEDFEEALKKVKPSVSQEDLKKYEEWTKEF 61 (62)
T ss_dssp BCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 46788888888888889999999888877765
No 76
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=44.84 E-value=96 Score=23.49 Aligned_cols=48 Identities=8% Similarity=0.035 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHhCCCCceEEecccCccC---CcHHHHHHHHHcCceEEEecc
Q 032162 17 NFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSGYSP 66 (146)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~~~~~~~ 66 (146)
-++.+.+..+++.... +++|...+.+- ....+..+|+++|+.++..+-
T Consensus 237 ~~~~~~~~~~~~~~~~--d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~ 287 (316)
T cd03319 237 CFSAADAARLAGGGAY--DGINIKLMKTGGLTEALRIADLARAAGLKVMVGCM 287 (316)
T ss_pred CCCHHHHHHHHhcCCC--CEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECc
Confidence 3555566555554332 55555443321 113566666666666666433
No 77
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=43.96 E-value=1.5e+02 Score=22.98 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=41.1
Q ss_pred HcCCccEEEeCCCCHHHHHHHHHhC-----CCCceEEecccCccCCcHHHHHHHHHcCceEEEec
Q 032162 6 DSGKARAIGVSNFSLKKLGDLLEIA-----RIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYS 65 (146)
Q Consensus 6 ~~G~ir~iGvS~~~~~~l~~~~~~~-----~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~ 65 (146)
+.|-.-.||.+..+++++++.++.. +-++-++-+.+......++.++.+.+.++.++..+
T Consensus 25 ~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 25 EGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred hCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc
Confidence 4566677888888999887776443 23556665444322223689999999999999864
No 78
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=43.32 E-value=83 Score=25.04 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=35.2
Q ss_pred CHHHHHHHHHhCCCCceEEecccCccCCc------HHHHHHHHHcCceEEE---eccCCCCC
Q 032162 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSG---YSPLGSAK 71 (146)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~~~~---~~~l~~gg 71 (146)
+-+.+++......++.-+.=.+-||.=+- ..+.+.|++||+.+|+ +.+|--+|
T Consensus 146 D~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g 207 (388)
T COG1168 146 DFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGG 207 (388)
T ss_pred cHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccC
Confidence 67888888877654434443444543331 4699999999999998 55664444
No 79
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=42.88 E-value=88 Score=19.95 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHhCCCCceEEec--ccCccCCcHHHHHHHHHcCceEEEeccC
Q 032162 18 FSLKKLGDLLEIARIPPAVNQV--ECHPAWQQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~q~--~~~~~~~~~~~~~~~~~~gi~~~~~~~l 67 (146)
.+.+.++.+... +|+++-+ .-+.....+++.++++++||++..|..-
T Consensus 40 l~~e~l~~l~~~---~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 40 LTAAHFEALLAL---QPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred CCHHHHHHHHhc---CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 467777777654 3454433 2233334578889999999999887544
No 80
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=41.53 E-value=32 Score=17.42 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=13.7
Q ss_pred cHHHHHHHHHhCCCHHHHHH
Q 032162 79 NPIVNTVAEKLGKSPAQVAL 98 (146)
Q Consensus 79 ~~~l~~~a~~~~~s~~~lal 98 (146)
.+.+..+|.+++++..++.-
T Consensus 6 gDtl~~IA~~~~~~~~~l~~ 25 (44)
T PF01476_consen 6 GDTLWSIAKRYGISVDELME 25 (44)
T ss_dssp T--HHHHHHHTTS-HHHHHH
T ss_pred CCcHHHHHhhhhhhHhHHHH
Confidence 46789999999999887543
No 81
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=41.52 E-value=33 Score=24.79 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=17.3
Q ss_pred HHHHHHHH---HcCceEEEeccCCCCCCC
Q 032162 48 TKLQAFCK---SKGVHLSGYSPLGSAKNT 73 (146)
Q Consensus 48 ~~~~~~~~---~~gi~~~~~~~l~~gg~~ 73 (146)
..++.-+. +.|=.++.|+|+..+|.+
T Consensus 121 ~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ 149 (204)
T PF06080_consen 121 EGLFAGAARLLKPGGLLFLYGPFNRDGKF 149 (204)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCcccCCEe
Confidence 34544444 346669999999888753
No 82
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=41.42 E-value=68 Score=24.97 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=43.9
Q ss_pred HhHHHcCCcc-EEEeCCCCHHHHHHHHHhCCCCceEEecccCcc---CCcHHHHHHHHHcCceEEEeccC
Q 032162 2 EALYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPA---WQQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 2 ~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~~~~~~~l 67 (146)
.+|++...+. ..|=|-+++..+..+++..- .+++|+....+ .....+.++|+++|+.++.++..
T Consensus 207 ~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a--~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 207 RLIRQHTATPLAVGEVFNSIWDWQNLIQERL--IDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHhcCCCCEEeccCCcCHHHHHHHHHhCC--CCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 3455555554 55666778888888877643 47777776543 22358999999999999876443
No 83
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=40.19 E-value=30 Score=19.81 Aligned_cols=20 Identities=35% Similarity=0.689 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHh
Q 032162 80 PIVNTVAEKLGKSPAQVALRW 100 (146)
Q Consensus 80 ~~l~~~a~~~~~s~~~lal~~ 100 (146)
-.+.+||+++|+++.++. .|
T Consensus 23 i~lkdIA~~Lgvs~~tIr-~W 42 (60)
T PF10668_consen 23 IKLKDIAEKLGVSESTIR-KW 42 (60)
T ss_pred ccHHHHHHHHCCCHHHHH-HH
Confidence 458999999999999865 35
No 84
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.91 E-value=1.5e+02 Score=23.26 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=8.1
Q ss_pred HHHHHHHc--CceEEEeccC
Q 032162 50 LQAFCKSK--GVHLSGYSPL 67 (146)
Q Consensus 50 ~~~~~~~~--gi~~~~~~~l 67 (146)
+.++++.. .|.+|.|.|.
T Consensus 271 L~~ll~~~~~~VNLIp~Np~ 290 (345)
T PRK14466 271 LVKLLRGIDCRVNLIRFHAI 290 (345)
T ss_pred HHHHHcCCCceEEEEecCCC
Confidence 44444432 3445555554
No 85
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=39.76 E-value=1.5e+02 Score=21.58 Aligned_cols=65 Identities=11% Similarity=0.150 Sum_probs=39.6
Q ss_pred hHHHcCCccEEEeCCCCHHHHHHHHHhCC-CCc--------------------------eEEecccCcc---CCcHHHHH
Q 032162 3 ALYDSGKARAIGVSNFSLKKLGDLLEIAR-IPP--------------------------AVNQVECHPA---WQQTKLQA 52 (146)
Q Consensus 3 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~~-~~~--------------------------~~~q~~~~~~---~~~~~~~~ 52 (146)
.+++-|.-+.+=+++|+.+.+.++.+... ++. ..+.+.++.. ...++++.
T Consensus 127 ~l~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 206 (249)
T cd08561 127 LIERYGAQDRVLVASFSDRVLRRFRRLCPRVATSAGEGEVAAFVLASRLGLGSLYSPPYDALQIPVRYGGVPLVTPRFVR 206 (249)
T ss_pred HHHHcCCCCcEEEEECCHHHHHHHHHHCCCcceeccHHHHHHHHHHhhcccccccCCCCcEEEcCcccCCeecCCHHHHH
Confidence 45556666778889999998888876553 110 1111111100 11257888
Q ss_pred HHHHcCceEEEeccC
Q 032162 53 FCKSKGVHLSGYSPL 67 (146)
Q Consensus 53 ~~~~~gi~~~~~~~l 67 (146)
.++++|+.+.+|..-
T Consensus 207 ~~~~~G~~v~vWTVN 221 (249)
T cd08561 207 AAHAAGLEVHVWTVN 221 (249)
T ss_pred HHHHCCCEEEEEecC
Confidence 888888888888653
No 86
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=39.74 E-value=1.7e+02 Score=22.29 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=49.9
Q ss_pred CHHHHHHHHHhCCCCceEEecccCccCCc------HHHHHHHHHcCceEEE-eccCCCCCCC-----CCCCCcHHHHHHH
Q 032162 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSG-YSPLGSAKNT-----HRVLQNPIVNTVA 86 (146)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~~~~-~~~l~~gg~~-----~~~~~~~~l~~~a 86 (146)
+.+.+.++++. .++++++.=|.+.-+ .++.++|+..|+.+-+ .+.+++..-. ..+.+++...+++
T Consensus 86 ~~e~i~~Ai~~---GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv 162 (283)
T PRK07998 86 TFEDVKQAVRA---GFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFV 162 (283)
T ss_pred CHHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHH
Confidence 45566666654 457777766654432 5899999999998844 4555332100 1134557778888
Q ss_pred HHhCCCHHHHHHHhhhcCC
Q 032162 87 EKLGKSPAQVALRWGLQMG 105 (146)
Q Consensus 87 ~~~~~s~~~lal~~~l~~~ 105 (146)
++-|+. .+|.++-..||
T Consensus 163 ~~TgvD--~LAvaiGt~HG 179 (283)
T PRK07998 163 ERTGCD--MLAVSIGNVHG 179 (283)
T ss_pred HHhCcC--eeehhcccccc
Confidence 888766 34555555554
No 87
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=39.45 E-value=95 Score=19.33 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=53.7
Q ss_pred HHHc-CCccEEEeCCCCHHHHHHHHHhCCCC-------------ceEEecccCccCCcHHHHHHHHHcCceEEEeccCCC
Q 032162 4 LYDS-GKARAIGVSNFSLKKLGDLLEIARIP-------------PAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGS 69 (146)
Q Consensus 4 l~~~-G~ir~iGvS~~~~~~l~~~~~~~~~~-------------~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l~~ 69 (146)
+.+. ..++-.|+++-+++..+.+.+..+++ ++++-+- ++.....+++..|-++|+.++.=.|++.
T Consensus 19 ~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~-tp~~~h~~~~~~~l~~g~~v~~EKP~~~ 97 (120)
T PF01408_consen 19 LLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIA-TPPSSHAEIAKKALEAGKHVLVEKPLAL 97 (120)
T ss_dssp HHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEE-SSGGGHHHHHHHHHHTTSEEEEESSSSS
T ss_pred HHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEe-cCCcchHHHHHHHHHcCCEEEEEcCCcC
Confidence 4444 66778899999988888876665542 1111110 0111125899999999999999999965
Q ss_pred CCCCCCCCCcHHHHHHHHHhCCC
Q 032162 70 AKNTHRVLQNPIVNTVAEKLGKS 92 (146)
Q Consensus 70 gg~~~~~~~~~~l~~~a~~~~~s 92 (146)
. .-+-..+.+.++++|+.
T Consensus 98 ~-----~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 98 T-----LEEAEELVEAAKEKGVK 115 (120)
T ss_dssp S-----HHHHHHHHHHHHHHTSC
T ss_pred C-----HHHHHHHHHHHHHhCCE
Confidence 2 23336677777777653
No 88
>PRK07094 biotin synthase; Provisional
Probab=39.39 E-value=1.7e+02 Score=22.20 Aligned_cols=110 Identities=12% Similarity=0.117 Sum_probs=55.5
Q ss_pred HHHcCCccEEEeC---C--CCHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCC
Q 032162 4 LYDSGKARAIGVS---N--FSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQ 78 (146)
Q Consensus 4 l~~~G~ir~iGvS---~--~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~ 78 (146)
+++.| ++.+.++ + ++.+.+.++.+...-.+. +.+.++......+.+...++.|+..+..+.= -..
T Consensus 82 ~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glE--------s~~ 151 (323)
T PRK07094 82 AYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRHE--------TAD 151 (323)
T ss_pred HHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEeccc--------cCC
Confidence 34444 4555554 1 244555555543321111 1222344334467777777877766653222 122
Q ss_pred cHHHHHHHHHhCCCHHHH--HHHhhhcCC----cEEeec--CCCHHHHHHhhccc
Q 032162 79 NPIVNTVAEKLGKSPAQV--ALRWGLQMG----HSVLPK--SANEARLKENFDIF 125 (146)
Q Consensus 79 ~~~l~~~a~~~~~s~~~l--al~~~l~~~----~~~i~g--~~~~~~l~~n~~a~ 125 (146)
++.+..+.+ +.+..+. +++++.+.| ...++| -.+.+++.+.+..+
T Consensus 152 ~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l 204 (323)
T PRK07094 152 KELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFL 204 (323)
T ss_pred HHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHH
Confidence 344455543 3344433 566776666 345667 46777777766543
No 89
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=39.10 E-value=1.4e+02 Score=21.31 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=57.1
Q ss_pred eCCCCHHHHHHHHHhC-CCCceEEecccCccCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhC---
Q 032162 15 VSNFSLKKLGDLLEIA-RIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLG--- 90 (146)
Q Consensus 15 vS~~~~~~l~~~~~~~-~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~--- 90 (146)
+-..+.+.+.++.+.. ...+.++|+.++.-.....+-..+++++..+. ++.| -++..+.++... +.|
T Consensus 16 ~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~----iGaG----TV~~~~~~~~a~-~aGA~f 86 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRAL----IGAG----TVLSPEQVDRLA-DAGGRL 86 (206)
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcE----EeEE----ecCCHHHHHHHH-HcCCCE
Confidence 3445666665555443 23458888887654433457777777764211 2233 244444443332 222
Q ss_pred -CCH--HHHHHHhhhcCCcEEeecCCCHHHHHHhhcc
Q 032162 91 -KSP--AQVALRWGLQMGHSVLPKSANEARLKENFDI 124 (146)
Q Consensus 91 -~s~--~~lal~~~l~~~~~~i~g~~~~~~l~~n~~a 124 (146)
++| ..-..++....+..++||+.|++++.+..+.
T Consensus 87 ivsp~~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~ 123 (206)
T PRK09140 87 IVTPNTDPEVIRRAVALGMVVMPGVATPTEAFAALRA 123 (206)
T ss_pred EECCCCCHHHHHHHHHCCCcEEcccCCHHHHHHHHHc
Confidence 222 1234456666778889999999988877543
No 90
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=39.03 E-value=33 Score=25.94 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCceEEEeccCCCC
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSA 70 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~g 70 (146)
+++++|++++||+++.|.--..+
T Consensus 76 ~elv~Ya~~KgVgi~lw~~~~~~ 98 (273)
T PF10566_consen 76 PELVDYAKEKGVGIWLWYHSETG 98 (273)
T ss_dssp HHHHHHHHHTT-EEEEEEECCHT
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc
Confidence 68999999999999998766443
No 91
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=38.83 E-value=75 Score=24.33 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=39.8
Q ss_pred hHHHcCCcc-EEEeCCCCHHHHHHHHHhCCCCceEEecccCccC---CcHHHHHHHHHcCceEEEeccC
Q 032162 3 ALYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 3 ~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~~~~~~~l 67 (146)
+|++...+. ..|=|.++...+..+++..-+ +++|...+.+- ....+...|+.+|+.++..+.+
T Consensus 217 ~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~--dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~ 283 (324)
T TIGR01928 217 ELAKGTITPICLDESITSLDDARNLIELGNV--KVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGML 283 (324)
T ss_pred HHHhhcCCCEeeCCCcCCHHHHHHHHHcCCC--CEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceE
Confidence 344443333 455666788888777765433 66776655422 2257888889999888876544
No 92
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=38.66 E-value=1.6e+02 Score=21.86 Aligned_cols=26 Identities=19% Similarity=0.041 Sum_probs=18.6
Q ss_pred HHcCCccEEEeCCCCHHHHHHHHHhC
Q 032162 5 YDSGKARAIGVSNFSLKKLGDLLEIA 30 (146)
Q Consensus 5 ~~~G~ir~iGvS~~~~~~l~~~~~~~ 30 (146)
++-+..+.+=+|+|+++.+..+....
T Consensus 170 ~~~~~~~~v~isSF~~~~l~~~~~~~ 195 (290)
T cd08607 170 LEHAGKRRIIFSSFDADICTMLRFKQ 195 (290)
T ss_pred HHhCCCCCEEEEcCCHHHHHHHHHhC
Confidence 34455567779999998887776644
No 93
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=38.65 E-value=1.4e+02 Score=21.85 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=34.6
Q ss_pred HHHHHHHHcC-ceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHhhhcCCcEEeecCC
Q 032162 49 KLQAFCKSKG-VHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSPAQVALRWGLQMGHSVLPKSA 113 (146)
Q Consensus 49 ~~~~~~~~~g-i~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~~~lal~~~l~~~~~~i~g~~ 113 (146)
++.+.|.+.| |+|-++.-|++-|. + .---+.+++|+|+.| |++|+.....-+|.|..
T Consensus 139 ~i~e~~~~~g~iaVHCkaGlGRTG~----l---iAc~lmy~~g~ta~e-aI~~lR~~RpG~V~gpq 196 (225)
T KOG1720|consen 139 KIVENAEKGGKIAVHCKAGLGRTGT----L---IACYLMYEYGMTAGE-AIAWLRICRPGAVIGPQ 196 (225)
T ss_pred HHHHHHHhcCeEEEEeccCCCchhH----H---HHHHHHHHhCCCHHH-HHHHHHhcCCccccCHH
Confidence 4666676643 77777766655331 0 011234568999998 89998876544455443
No 94
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=38.46 E-value=1.1e+02 Score=23.10 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=35.1
Q ss_pred EEEeCCC-CH--HHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEec
Q 032162 12 AIGVSNF-SL--KKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYS 65 (146)
Q Consensus 12 ~iGvS~~-~~--~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~ 65 (146)
.||+|-| ++ ..+.+.+...+- .+.-..-|++..++++.....+.||.+.+|.
T Consensus 45 rIa~cLHle~kTA~L~~tL~a~GA--eV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~ 99 (268)
T PF05221_consen 45 RIAGCLHLEAKTAVLAETLKALGA--EVRWTGSNPLSTQDDVAAALAEEGIPVFAWK 99 (268)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTE--EEEEEESSTTT--HHHHHHHHHTTEEEEE-T
T ss_pred EEEEEEechHHHHHHHHHHHHcCC--eEEEecCCCcccchHHHHHhccCCceEEEeC
Confidence 6777776 43 334444555543 6666778999999999999999999999974
No 95
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=38.39 E-value=73 Score=20.75 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=35.5
Q ss_pred EEEeCC-CCHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEE
Q 032162 12 AIGVSN-FSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSG 63 (146)
Q Consensus 12 ~iGvS~-~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~ 63 (146)
-.|.|. .+++.++++++...-.+.+=--.+..+.-.++..++++++++.++-
T Consensus 42 K~GTSHkl~~eEle~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~ 94 (121)
T COG1504 42 KYGTSHKLALEELEELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIE 94 (121)
T ss_pred hcCcccccCHHHHHHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEE
Confidence 467775 5899999998854321122233445556668899999999988876
No 96
>PF12728 HTH_17: Helix-turn-helix domain
Probab=37.98 E-value=60 Score=17.14 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=14.7
Q ss_pred hHHHcCCccEEEeCC---CCHHHHHHHHH
Q 032162 3 ALYDSGKARAIGVSN---FSLKKLGDLLE 28 (146)
Q Consensus 3 ~l~~~G~ir~iGvS~---~~~~~l~~~~~ 28 (146)
++.++|.++.+++.. ++.+.+++.++
T Consensus 20 ~~~~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (51)
T PF12728_consen 20 RWIRQGKIPPFKIGRKWRIPKSDLDRWLE 48 (51)
T ss_pred HHHHcCCCCeEEeCCEEEEeHHHHHHHHH
Confidence 455666666666543 35555555544
No 97
>PF14502 HTH_41: Helix-turn-helix domain
Probab=37.94 E-value=63 Score=17.63 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCH--HHHHHHhhhcCCcEEee
Q 032162 80 PIVNTVAEKLGKSP--AQVALRWGLQMGHSVLP 110 (146)
Q Consensus 80 ~~l~~~a~~~~~s~--~~lal~~~l~~~~~~i~ 110 (146)
+++.+++++++++. .|-||+++-+.+.+.+.
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~Le 39 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAIKLE 39 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcEEee
Confidence 45788999998876 58899999888755443
No 98
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=37.91 E-value=1.3e+02 Score=23.89 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=42.8
Q ss_pred HhHHHcCCcc-EEEeCCCCHHHHHHHHHhCCCCceEEecccCccC---CcHHHHHHHHHcCceEEEeccC
Q 032162 2 EALYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 2 ~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~~~~~~~l 67 (146)
.+|++...+- ..|=|.++..++..+++..- .+++|......- ....+..+|+++|+.++.++..
T Consensus 254 ~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~a--vdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 254 AEFRRATGLPLATNMIVTDFRQLGHAIQLNA--VDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHhcCCCEEcCCcccCHHHHHHHHHcCC--CcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 3455554444 45556677888888877543 477777665432 2358999999999999887654
No 99
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.74 E-value=1.4e+02 Score=23.60 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=25.0
Q ss_pred HHHHHHHHHc--CceEEEeccCCCCCCCCCCCCc---HHHHHHHHHhCCC
Q 032162 48 TKLQAFCKSK--GVHLSGYSPLGSAKNTHRVLQN---PIVNTVAEKLGKS 92 (146)
Q Consensus 48 ~~~~~~~~~~--gi~~~~~~~l~~gg~~~~~~~~---~~l~~~a~~~~~s 92 (146)
..+.++++.. .|.++.|.|++.. ++.. ... +.+.++..++|++
T Consensus 297 ~~L~~~l~~~~~~VnlIpyn~~~~~-~~~~-ps~e~i~~F~~~L~~~Gi~ 344 (368)
T PRK14456 297 RKLIRFASRFFCKINLIDYNSIVNI-KFEP-VCSSTRERFRDRLLDAGLQ 344 (368)
T ss_pred HHHHHHHhcCCCeeEEeeeccCCCC-CCCC-CCHHHHHHHHHHHHHCCCc
Confidence 4678888775 6788888888543 1211 111 4455556666653
No 100
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=37.73 E-value=1.1e+02 Score=22.76 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=9.1
Q ss_pred cCCCHHHHHHhhcc
Q 032162 111 KSANEARLKENFDI 124 (146)
Q Consensus 111 g~~~~~~l~~n~~a 124 (146)
|.++++++++.+++
T Consensus 206 GI~~~e~~~~~~~~ 219 (256)
T TIGR00262 206 GISKPEQVKQAIDA 219 (256)
T ss_pred CCCCHHHHHHHHHc
Confidence 56667777666555
No 101
>PF13518 HTH_28: Helix-turn-helix domain
Probab=37.53 E-value=49 Score=17.34 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCHHHHHHHhhhc
Q 032162 81 IVNTVAEKLGKSPAQVALRWGLQ 103 (146)
Q Consensus 81 ~l~~~a~~~~~s~~~lal~~~l~ 103 (146)
...++|.++|++..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 5778899999988765 677643
No 102
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=37.26 E-value=1.1e+02 Score=22.73 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=16.0
Q ss_pred ceEEecccCccCCc--HHHHHHHHHcCc
Q 032162 34 PAVNQVECHPAWQQ--TKLQAFCKSKGV 59 (146)
Q Consensus 34 ~~~~q~~~~~~~~~--~~~~~~~~~~gi 59 (146)
|.+++..||++.+- ...++.|++.|+
T Consensus 91 p~vlm~Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 91 PIVLMTYYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred CEEEEecccHHhhcCHHHHHHHHHHcCC
Confidence 55688888876642 345555555554
No 103
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=37.16 E-value=57 Score=16.14 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=14.8
Q ss_pred HHHHHHHHHhCCCHHHHH
Q 032162 80 PIVNTVAEKLGKSPAQVA 97 (146)
Q Consensus 80 ~~l~~~a~~~~~s~~~la 97 (146)
+.+.++|++.|.|..++.
T Consensus 12 ~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 12 ERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHCcCHHHHH
Confidence 578899999999988743
No 104
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=37.05 E-value=2e+02 Score=22.81 Aligned_cols=62 Identities=13% Similarity=0.027 Sum_probs=38.4
Q ss_pred cCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCc---HHHHHHHHHcCceEEEeccCCC
Q 032162 7 SGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGS 69 (146)
Q Consensus 7 ~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~~~~~~~l~~ 69 (146)
.+.++.+-+...+++.+++.++. +.+..++..+-|+.-.- .++.+.|+++|+-++.=.+.+.
T Consensus 122 ~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 122 KGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred hcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 34456566655577777776542 33444545455553322 5799999999998887655543
No 105
>PRK10945 gene expression modulator; Provisional
Probab=37.02 E-value=57 Score=19.39 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=25.1
Q ss_pred cCCCHHHHHHhhcccCccCCHHHHHhhHhhhh
Q 032162 111 KSANEARLKENFDIFDWYIPEDLLAKFPEIEQ 142 (146)
Q Consensus 111 g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~ 142 (146)
.++|.+-++.-++-....|+..|+..+..+.+
T Consensus 17 rcss~eTLEkvie~~~~~L~~~E~~~f~~AaD 48 (72)
T PRK10945 17 RCQTIDTLERVIEKNKYELSDDELAVFYSAAD 48 (72)
T ss_pred hcCcHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 45788888888888778999988887766543
No 106
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=36.89 E-value=16 Score=22.76 Aligned_cols=30 Identities=33% Similarity=0.350 Sum_probs=20.1
Q ss_pred HhHHHcCCccEEE--------eCCC---CHHHHHHHHHhCC
Q 032162 2 EALYDSGKARAIG--------VSNF---SLKKLGDLLEIAR 31 (146)
Q Consensus 2 ~~l~~~G~ir~iG--------vS~~---~~~~l~~~~~~~~ 31 (146)
++|+++|+++++. +|-| +.+.+.+++....
T Consensus 32 ~eLq~~G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~sLP 72 (91)
T PF02426_consen 32 QELQRQGKWRHLWRVVGRYANVSIFDVEDNDELHELLSSLP 72 (91)
T ss_pred HHHHHCCeeeEEEEecCCcceEEEEECCCHHHHHHHHHhCC
Confidence 5799999999864 3334 4566666665543
No 107
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=36.36 E-value=1.7e+02 Score=21.35 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=65.0
Q ss_pred CHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCC-------
Q 032162 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGK------- 91 (146)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~------- 91 (146)
+.+.++...+..+++....++....-..-.++....++.|+..++.+.+... +....++.+|.+.|+
T Consensus 46 ~~~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~s~------~qr~~~e~vc~~~gl~~~~PLW 119 (222)
T TIGR00289 46 NLHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIESN------YQKSRIDKVCRELGLKSIAPLW 119 (222)
T ss_pred CHHHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECccccH------HHHHHHHHHHHHcCCEEecccc
Confidence 3455555566666665555543211000146777777888888887666431 234667778877654
Q ss_pred --CHHHHHHHhhhcCC-cEEeecCCCHHHHHHhhcccCccCCHHHHHhhHhhhh
Q 032162 92 --SPAQVALRWGLQMG-HSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQ 142 (146)
Q Consensus 92 --s~~~lal~~~l~~~-~~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~ 142 (146)
+..++ +.++ +.| .++|+++++. .+.+. -+...|+++.++.|.++.+
T Consensus 120 ~~d~~~l-~e~i-~~Gf~aiIv~v~~~-gL~~~--~LGr~id~~~~~~L~~l~~ 168 (222)
T TIGR00289 120 HADPEKL-MYEV-AEKFEVIIVSVSAM-GLDES--WLGRRIDKECIDDLKRLNE 168 (222)
T ss_pred CCCHHHH-HHHH-HcCCeEEEEEEccC-CCChH--HcCCccCHHHHHHHHHHHh
Confidence 44555 4654 677 4455555433 23322 2345799888888876554
No 108
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=35.52 E-value=1.9e+02 Score=21.65 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=8.3
Q ss_pred ceEEecccCccCC
Q 032162 34 PAVNQVECHPAWQ 46 (146)
Q Consensus 34 ~~~~q~~~~~~~~ 46 (146)
|.+.+..||++.+
T Consensus 93 p~vlm~Y~N~i~~ 105 (263)
T CHL00200 93 PIVIFTYYNPVLH 105 (263)
T ss_pred CEEEEecccHHHH
Confidence 4457777776553
No 109
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.50 E-value=80 Score=21.77 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=27.9
Q ss_pred CccEEEeCCC--CHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEE
Q 032162 9 KARAIGVSNF--SLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSG 63 (146)
Q Consensus 9 ~ir~iGvS~~--~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~ 63 (146)
+|-.+|..|. +...+.+++. . .+.+..|+-.+.-...+..+++.|+.++.
T Consensus 79 ~Iavv~~~~~~~~~~~~~~ll~---~--~i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 79 KIAVVGYPNIIPGLESIEELLG---V--DIKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp EEEEEEESS-SCCHHHHHHHHT------EEEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred cEEEEecccccHHHHHHHHHhC---C--ceEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 5556666664 3455655552 2 55555554322125688888888988888
No 110
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.17 E-value=1.9e+02 Score=22.61 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=13.4
Q ss_pred HHHHHHHHc--CceEEEeccCCC
Q 032162 49 KLQAFCKSK--GVHLSGYSPLGS 69 (146)
Q Consensus 49 ~~~~~~~~~--gi~~~~~~~l~~ 69 (146)
.+.++++.. .|.++.|.|++.
T Consensus 275 ~La~~l~~l~~~VnLIPynp~~~ 297 (345)
T PRK14457 275 ELANLLRGFQSHVNLIPYNPIDE 297 (345)
T ss_pred HHHHHHhcCCCeEEEecCCCCCC
Confidence 466666653 577777777754
No 111
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.11 E-value=1.5e+02 Score=23.24 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhCC-CCceEEecccCccCC-----c-----HHHHHHHHHcCceEEEeccCC
Q 032162 17 NFSLKKLGDLLEIAR-IPPAVNQVECHPAWQ-----Q-----TKLQAFCKSKGVHLSGYSPLG 68 (146)
Q Consensus 17 ~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~-----~-----~~~~~~~~~~gi~~~~~~~l~ 68 (146)
|.+++.++++.+... .+..++-++||+..- . ....+..+++|+.+..+...+
T Consensus 254 NDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~~gi~~tiR~~~G 316 (344)
T PRK14464 254 NDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHRRGVLTKVRNSAG 316 (344)
T ss_pred CCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHHCCceEEEECCCC
Confidence 456666666655443 345666667765432 1 245566667777777766663
No 112
>PRK14017 galactonate dehydratase; Provisional
Probab=34.90 E-value=1e+02 Score=24.16 Aligned_cols=62 Identities=21% Similarity=0.179 Sum_probs=41.1
Q ss_pred hHHHcCCcc-EEEeCCCCHHHHHHHHHhCCCCceEEecccCcc---CCcHHHHHHHHHcCceEEEecc
Q 032162 3 ALYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPA---WQQTKLQAFCKSKGVHLSGYSP 66 (146)
Q Consensus 3 ~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~~~~~~~ 66 (146)
+|++...+. ..|=|.++...+..+++..- .+++|+..+.+ .+...+.++|+++|+.++..+.
T Consensus 222 ~L~~~~~~pIa~dEs~~~~~~~~~li~~~a--~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 222 EIAAQTSIPIATGERLFSRWDFKRVLEAGG--VDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHhcCCCCEEeCCccCCHHHHHHHHHcCC--CCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 455554444 45556678888888877643 36777765543 2225899999999999888654
No 113
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=34.61 E-value=1.2e+02 Score=24.09 Aligned_cols=63 Identities=14% Similarity=0.078 Sum_probs=43.3
Q ss_pred hHHHcCCcc-EEEeCCCCHHHHHHHHHhCCCCceEEecccCcc---CCcHHHHHHHHHcCceEEEeccC
Q 032162 3 ALYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPA---WQQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 3 ~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~~~~~~~l 67 (146)
+|++.-.|. ..|=|-+++..++.+++..- .+++|...... .....+.++|+.+|+.++.++..
T Consensus 251 ~L~~~~~iPIa~dEs~~~~~~~~~li~~~a--~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 251 LIRQHTTTPLAVGEVFNSIWDCKQLIEEQL--IDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHhcCCCCEEeCcCccCHHHHHHHHHcCC--CCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 455554444 55666788888888877643 47777766543 22358999999999999886554
No 114
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=34.38 E-value=38 Score=16.77 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=14.9
Q ss_pred cHHHHHHHHHhCCCHHHHH
Q 032162 79 NPIVNTVAEKLGKSPAQVA 97 (146)
Q Consensus 79 ~~~l~~~a~~~~~s~~~la 97 (146)
.+.+..+|++|+++..+++
T Consensus 4 gdtl~~IA~~~~~~~~~l~ 22 (44)
T TIGR02899 4 GDTLWKIAKKYGVDFDELI 22 (44)
T ss_pred CCCHHHHHHHHCcCHHHHH
Confidence 3568889999999887764
No 115
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=34.04 E-value=1.7e+02 Score=21.55 Aligned_cols=16 Identities=13% Similarity=0.138 Sum_probs=7.4
Q ss_pred HHHHHHHHcCceEEEe
Q 032162 49 KLQAFCKSKGVHLSGY 64 (146)
Q Consensus 49 ~~~~~~~~~gi~~~~~ 64 (146)
.+...|+++|+.++..
T Consensus 222 ~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 222 RVLAVAEALGLPVMVG 237 (265)
T ss_pred HHHHHHHHcCCcEEec
Confidence 4444444444444443
No 116
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=33.78 E-value=97 Score=19.62 Aligned_cols=49 Identities=18% Similarity=0.329 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHhCCCCceEEecc--cCccCCcHHHHHHHHHcCceEEEeccC
Q 032162 18 FSLKKLGDLLEIARIPPAVNQVE--CHPAWQQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~q~~--~~~~~~~~~~~~~~~~~gi~~~~~~~l 67 (146)
.+.+.+..+.... .+|+++-+. -+.....+++..+++++||++..|.+-
T Consensus 39 l~~~~l~~l~~~~-p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 39 LTPEDLEELLELE-PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp EETHHHHHHHCTC-CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CCHHHHHHHHhcc-CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 3677888777653 245555443 334445689999999999999997554
No 117
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=33.75 E-value=1e+02 Score=24.61 Aligned_cols=67 Identities=9% Similarity=0.102 Sum_probs=44.3
Q ss_pred HHHHHHHH-HcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCC------CHHHHHHH-----------------hhhc
Q 032162 48 TKLQAFCK-SKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGK------SPAQVALR-----------------WGLQ 103 (146)
Q Consensus 48 ~~~~~~~~-~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~------s~~~lal~-----------------~~l~ 103 (146)
..+..++. +-++-++.-+.-+ -+...|.++|.+++. +..++-.. |+..
T Consensus 279 ~A~~~La~~~vD~miVVGG~nS--------SNT~rL~eia~~~g~~ty~Ie~~~eL~~~~~i~h~~~~~~~~~t~~wl~~ 350 (387)
T PRK13371 279 DAMFSLVEEPLDLMVVIGGYNS--------SNTTHLQEIAIERGIPSYHIDSPERILSGNSIEHKPLGKELVVTENWLPE 350 (387)
T ss_pred HHHHHHhhcCCCEEEEECCCCC--------ccHHHHHHHHHhcCCCEEEECCHHHcCCccccccccccchhhhhhhhhcc
Confidence 46777775 5787777733222 234789999998874 44566554 8764
Q ss_pred CC--cEEeecCCCHHHHHHhh
Q 032162 104 MG--HSVLPKSANEARLKENF 122 (146)
Q Consensus 104 ~~--~~~i~g~~~~~~l~~n~ 122 (146)
.. +-+..|+|+|+.+-+.+
T Consensus 351 ~~~~VGITAGASTP~~lI~eV 371 (387)
T PRK13371 351 GPVTVGITSGASTPDKVVEDV 371 (387)
T ss_pred CCCEEEEecCCCCCHHHHHHH
Confidence 33 55678999999775554
No 118
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.56 E-value=1.4e+02 Score=21.22 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=21.3
Q ss_pred HHHcCCccEEEeCCCCHHHHHHHHHhC
Q 032162 4 LYDSGKARAIGVSNFSLKKLGDLLEIA 30 (146)
Q Consensus 4 l~~~G~ir~iGvS~~~~~~l~~~~~~~ 30 (146)
.++.||+-++|+-|-.---+-.+++..
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdD 43 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDD 43 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccc
Confidence 368899999999999877776666554
No 119
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=33.40 E-value=1.9e+02 Score=20.96 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=40.1
Q ss_pred hHHHcCC-ccEEEeC-CCCHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcC-ceEEEeccC
Q 032162 3 ALYDSGK-ARAIGVS-NFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKG-VHLSGYSPL 67 (146)
Q Consensus 3 ~l~~~G~-ir~iGvS-~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~g-i~~~~~~~l 67 (146)
++.+... ++.+||. |.+.+.+.++.+.. .++.+|++-. .+++.++..++.. +.++---+.
T Consensus 45 ~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~--~ld~VQlHG~---e~~~~~~~l~~~~~~~v~kai~v 107 (208)
T COG0135 45 EIASAVPKVKVVGVFVNESIEEILEIAEEL--GLDAVQLHGD---EDPEYIDQLKEELGVPVIKAISV 107 (208)
T ss_pred HHHHhCCCCCEEEEECCCCHHHHHHHHHhc--CCCEEEECCC---CCHHHHHHHHhhcCCceEEEEEe
Confidence 3444444 7899988 46889999998875 4599998775 3466677766654 544443333
No 120
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=33.39 E-value=1.8e+02 Score=22.97 Aligned_cols=51 Identities=25% Similarity=0.293 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHhCC-CCceEEecccCccCCc----------HHHHHHHHHcCceEEEeccC
Q 032162 17 NFSLKKLGDLLEIAR-IPPAVNQVECHPAWQQ----------TKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 17 ~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~~~~~~~~~gi~~~~~~~l 67 (146)
|-+.++.+++.+..+ ++..++-++||++... ....++..++||.+..+.+-
T Consensus 267 ND~~e~A~~L~~ll~~~~~~VNLIP~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~ 328 (349)
T COG0820 267 NDSLEHAKELAKLLKGIPCKVNLIPYNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTR 328 (349)
T ss_pred cCCHHHHHHHHHHhcCCCceEEEeecCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccc
Confidence 334555555555554 3336666777665532 13445555566666665544
No 121
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=33.23 E-value=1.6e+02 Score=22.39 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=47.2
Q ss_pred CHHHHHHHHHhCCCCceEEecccCccCCc------HHHHHHHHHcCceEEE-eccCCCC--CC--C--CC-CCCcHHHHH
Q 032162 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSG-YSPLGSA--KN--T--HR-VLQNPIVNT 84 (146)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~~~~-~~~l~~g--g~--~--~~-~~~~~~l~~ 84 (146)
+.+.+.++++. .+.++++.=|.+.-+ ++++++|+..|+.+-+ -+-+++. +. . .. +.+++...+
T Consensus 86 ~~e~i~~ai~~---GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~ 162 (286)
T PRK12738 86 SLDDIRRKVHA---GVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKR 162 (286)
T ss_pred CHHHHHHHHHc---CCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHH
Confidence 34555555543 357777766655432 5899999999998877 2333221 10 0 01 335567777
Q ss_pred HHHHhCCCHHHHHHHhhhcCC
Q 032162 85 VAEKLGKSPAQVALRWGLQMG 105 (146)
Q Consensus 85 ~a~~~~~s~~~lal~~~l~~~ 105 (146)
+.++-|++. ||.++-..||
T Consensus 163 Fv~~TgvD~--LAvaiGt~HG 181 (286)
T PRK12738 163 FVELTGVDS--LAVAIGTAHG 181 (286)
T ss_pred HHHHhCCCE--EEeccCcccC
Confidence 877777653 3444444444
No 122
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=33.07 E-value=1.9e+02 Score=20.81 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=28.8
Q ss_pred CCcHHHHHHHHHcCceEEEeccCCCCCCCCCCC-CcHHHHHH
Q 032162 45 WQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVL-QNPIVNTV 85 (146)
Q Consensus 45 ~~~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~-~~~~l~~~ 85 (146)
....+..++|++.|..++.....++||++-++. +.+.+.+.
T Consensus 25 ~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~ 66 (211)
T PF02786_consen 25 SSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEA 66 (211)
T ss_dssp SSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHH
T ss_pred CCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhh
Confidence 334789999999999999999998888753333 33444444
No 123
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=32.84 E-value=1e+02 Score=21.87 Aligned_cols=65 Identities=18% Similarity=0.067 Sum_probs=39.9
Q ss_pred hHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCc---cCCcHHHHHHHHHcCceEEEeccCCCC
Q 032162 3 ALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHP---AWQQTKLQAFCKSKGVHLSGYSPLGSA 70 (146)
Q Consensus 3 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~---~~~~~~~~~~~~~~gi~~~~~~~l~~g 70 (146)
+|++.|- ..+-..-.+.+.+.++++..+. .++-+.... ......+++.|++.||..+.++.++..
T Consensus 39 ~l~~~g~-~vv~~d~~~~~~l~~al~g~d~--v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 39 QLQALGA-EVVEADYDDPESLVAALKGVDA--VFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHHTTT-EEEES-TT-HHHHHHHHTTCSE--EEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSG
T ss_pred hhhcccc-eEeecccCCHHHHHHHHcCCce--EEeecCcchhhhhhhhhhHHHhhhccccceEEEEEeccc
Confidence 4556665 3455555578888888875432 333333221 111257999999999999999999665
No 124
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=32.47 E-value=69 Score=20.49 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=17.3
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCC
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGK 91 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~ 91 (146)
..+++.|++.|+..+- |= .| .+-.+..+.+.+.+.|+
T Consensus 64 e~I~~ia~~~g~~~i~--pG-yg----~lse~~~fa~~~~~~gi 100 (110)
T PF00289_consen 64 EAIIDIARKEGADAIH--PG-YG----FLSENAEFAEACEDAGI 100 (110)
T ss_dssp HHHHHHHHHTTESEEE--ST-SS----TTTTHHHHHHHHHHTT-
T ss_pred HHHhhHhhhhcCcccc--cc-cc----hhHHHHHHHHHHHHCCC
Confidence 4567777766543332 11 11 23334555555555543
No 125
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=32.37 E-value=2e+02 Score=20.96 Aligned_cols=60 Identities=22% Similarity=0.121 Sum_probs=35.5
Q ss_pred CCccEEEeCCCCHHHHHHHHHhCCCCceEEecc-----------------cCc--cCCcHHHHHHHHHcCceEEEeccC
Q 032162 8 GKARAIGVSNFSLKKLGDLLEIARIPPAVNQVE-----------------CHP--AWQQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 8 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~-----------------~~~--~~~~~~~~~~~~~~gi~~~~~~~l 67 (146)
+..+.+=+++|+++.+..+.+....-+...-.. +++ ..-.+++++.++++|+.+.+|..-
T Consensus 140 ~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTvn 218 (249)
T PRK09454 140 GAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDWLELTRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYTVN 218 (249)
T ss_pred CCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccHHHHHHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEeCC
Confidence 333457789999999988877554211111110 111 111367888888888888887543
No 126
>PF05848 CtsR: Firmicute transcriptional repressor of class III stress genes (CtsR); InterPro: IPR008463 This family consists of several Firmicute transcriptional repressor of class III stress gene (CtsR) proteins. CtsR of Listeria monocytogenes negatively regulates the clpC, clpP and clpE genes belonging to the CtsR regulon [].; PDB: 3H0D_A.
Probab=32.23 E-value=1.7e+02 Score=20.12 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCHHH----HHHHhhhcCCc--------------EEeecCCCHHHHHHhhcccCccCCHHHHHh
Q 032162 82 VNTVAEKLGKSPAQ----VALRWGLQMGH--------------SVLPKSANEARLKENFDIFDWYIPEDLLAK 136 (146)
Q Consensus 82 l~~~a~~~~~s~~~----lal~~~l~~~~--------------~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~ 136 (146)
-.++|.+.+|-|.| +..||...+|. .-+.-....+-+..-.+...-.+|..+-..
T Consensus 28 R~eLA~~F~CvPSQINYVl~TRFT~e~GY~VESrRGGGGyIRI~rv~~~~~~~~~~~l~~~ig~~is~~~a~~ 100 (152)
T PF05848_consen 28 RNELAERFNCVPSQINYVLSTRFTPERGYIVESRRGGGGYIRIVRVPLDDEEDLLDHLIESIGDSISQQDAED 100 (152)
T ss_dssp HHHHHHHTTS-THHHHHHHHHHSSCCCTEEEEEE-STT-EEEEEEEEESTCHHHHHHHHCCS-S---HHHHHH
T ss_pred HHHHHHHhCCchhhhheeeeccccCCCCeEEEeccCCCceEEEEEEccCCcHHHHHHHHHHhcCcCCHHHHHH
Confidence 46899999999998 56788887751 123333444555555566555677766443
No 127
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=32.21 E-value=74 Score=20.50 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=28.9
Q ss_pred cCCCHHHHHHhhcccCccCCHHHHHhhHhhhhhh
Q 032162 111 KSANEARLKENFDIFDWYIPEDLLAKFPEIEQSL 144 (146)
Q Consensus 111 g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~~~ 144 (146)
-..+++.++.-+...+..+++++++.|-++..++
T Consensus 77 ~P~~~dElrai~~~~~~~~~~e~l~~ILd~l~k~ 110 (112)
T PRK14981 77 LPETRDELRAIFAKERYTLSPEELDEILDIVKKY 110 (112)
T ss_pred CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 4578999999999988899999999988877665
No 128
>PF11580 DUF3239: Protein of unknown function (DUF3239); InterPro: IPR021632 This entry contains possible membrane proteins, however this cannot be confirmed. Currently they have no known function. ; PDB: 3C8I_B.
Probab=32.12 E-value=83 Score=20.97 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=22.3
Q ss_pred cCCCHHHHHHhhcccCccCCHHHHHhhHhhhhhh
Q 032162 111 KSANEARLKENFDIFDWYIPEDLLAKFPEIEQSL 144 (146)
Q Consensus 111 g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~~~ 144 (146)
|+++.+-++.+.++ +++++|+.|++..+.+
T Consensus 97 ~T~D~~Vi~~A~~a----Ip~~eW~~L~~~~~r~ 126 (128)
T PF11580_consen 97 GTRDAKVIRRAEKA----IPQEEWRQLEKNLKRL 126 (128)
T ss_dssp T---HHHHHHHHHH----S-HHHHHHHHHHGGGH
T ss_pred cCCCHHHHHHHHhh----CCHHHHHHHHHHHhhh
Confidence 99999988888886 7899999999887764
No 129
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=31.99 E-value=45 Score=25.37 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCceEEEeccCCC
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGS 69 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~ 69 (146)
..+.+|++++||+.++|+.+.+
T Consensus 243 ~~~~~fA~~~~l~~~s~Ws~~R 264 (294)
T cd06543 243 QTLVDFAKEKGLGRLSMWSLNR 264 (294)
T ss_pred HHHHHHHHhCCCCeEeeeeccC
Confidence 5799999999999999999965
No 130
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.78 E-value=49 Score=23.93 Aligned_cols=31 Identities=6% Similarity=-0.018 Sum_probs=24.7
Q ss_pred HHHHHhhhcCCcEEeecCCCHHHHHHhhccc
Q 032162 95 QVALRWGLQMGHSVLPKSANEARLKENFDIF 125 (146)
Q Consensus 95 ~lal~~~l~~~~~~i~g~~~~~~l~~n~~a~ 125 (146)
.-.++++.+.+...+||+.|+.++.+..++.
T Consensus 99 ~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~G 129 (213)
T PRK06552 99 RETAKICNLYQIPYLPGCMTVTEIVTALEAG 129 (213)
T ss_pred HHHHHHHHHcCCCEECCcCCHHHHHHHHHcC
Confidence 4467788888888899999999998887543
No 131
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=31.57 E-value=2.1e+02 Score=22.22 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=35.5
Q ss_pred cEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCc---HHHHHHHHHcCceEEEeccC
Q 032162 11 RAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 11 r~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~~~~~~~l 67 (146)
+..-+...+++.+++.+.. +.+..++..+.|+.-.. .++.+.|+++|+-++.=.+.
T Consensus 117 ~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 117 RFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred eEEEECCCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 3333444567777766543 33445555677775432 57999999999988875554
No 132
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=31.43 E-value=2e+02 Score=23.17 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=36.2
Q ss_pred EEEeCCC-CH--HHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEec
Q 032162 12 AIGVSNF-SL--KKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYS 65 (146)
Q Consensus 12 ~iGvS~~-~~--~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~ 65 (146)
.|+.|-| ++ ..+-+.+...+- .+.-..-|++..++++.....+.||.+++|.
T Consensus 38 ~i~~~~hl~~~ta~l~~~L~~~GA--~v~~~~~np~stqd~vaa~l~~~gi~v~a~~ 92 (413)
T cd00401 38 RIAGCLHMTVQTAVLIETLVALGA--EVRWSSCNIFSTQDHAAAAIAAAGIPVFAWK 92 (413)
T ss_pred EEEEEEcchHHHHHHHHHHHHcCC--EEEEEcCCCccchHHHHHHHHhcCceEEEEc
Confidence 5777766 32 333333444443 5666677888888999999999999999963
No 133
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=31.40 E-value=1.2e+02 Score=23.36 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=37.1
Q ss_pred hHHHcCCcc-EEEeCCCCHHHHHHHHHhCCCCceEEecccCccC---CcHHHHHHHHHcCceEEEec
Q 032162 3 ALYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSGYS 65 (146)
Q Consensus 3 ~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~~~~~~ 65 (146)
++++.-.|. ..|=|.++++.+.++++... .+++|+....+- +...+...|+++|+.++..+
T Consensus 234 ~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~--~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 234 RLRQATSVPIAAGENLYTRWEFRDLLEAGA--VDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHhCCCCEEeccccccHHHHHHHHHhCC--CCEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 444544444 33334467778777776543 366666655432 22578888888888877654
No 134
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.38 E-value=2.2e+02 Score=22.59 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=11.6
Q ss_pred HHHHHHHHc-----CceEEEeccCCC
Q 032162 49 KLQAFCKSK-----GVHLSGYSPLGS 69 (146)
Q Consensus 49 ~~~~~~~~~-----gi~~~~~~~l~~ 69 (146)
.+.++++.. .|.+|.|.|+++
T Consensus 301 ~L~~llk~~~~~~~~VNLIpyNp~~~ 326 (373)
T PRK14459 301 LLGKKLHGRGGGWVHVNLIPLNPTPG 326 (373)
T ss_pred HHHHHHhhccCCCeEEEEEccCCCCC
Confidence 355555544 456666666643
No 135
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=31.33 E-value=2.3e+02 Score=21.37 Aligned_cols=27 Identities=4% Similarity=-0.085 Sum_probs=19.9
Q ss_pred HHHcCCccEEEeCCCCHHHHHHHHHhC
Q 032162 4 LYDSGKARAIGVSNFSLKKLGDLLEIA 30 (146)
Q Consensus 4 l~~~G~ir~iGvS~~~~~~l~~~~~~~ 30 (146)
+++.|.-..+=+|+|+.+.+..+.+..
T Consensus 156 i~~~~~~~~v~isSF~~~~L~~~~~~~ 182 (300)
T cd08612 156 VRKYKREDITVWGSFNDEIVKKCHKEN 182 (300)
T ss_pred HHHcCCCCcEEEEeCCHHHHHHHHHhC
Confidence 444555566778999999998887655
No 136
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=31.16 E-value=2.5e+02 Score=21.69 Aligned_cols=105 Identities=10% Similarity=0.043 Sum_probs=59.1
Q ss_pred CHHHHHHHHHhCCCCceEEecccCccCCc------HHHHHHHHHcCceEEEe-ccCCCC--CC--C--C-CCCCcHHHHH
Q 032162 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGY-SPLGSA--KN--T--H-RVLQNPIVNT 84 (146)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~~~~~-~~l~~g--g~--~--~-~~~~~~~l~~ 84 (146)
+.+.+.++++. .+.++++.=|.+.-+ ++++++|+..|+.+-+= +-++++ +. . . -+.+++...+
T Consensus 86 ~~e~i~~ai~~---GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~ 162 (307)
T PRK05835 86 TFESCEKAVKA---GFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQ 162 (307)
T ss_pred CHHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHH
Confidence 45556665554 357887777654422 58999999999998872 333321 10 0 0 1334466777
Q ss_pred HHHHhCCCHHHHHHHhhhcCCcEEeec--CCCHHHHHHhhcccCcc
Q 032162 85 VAEKLGKSPAQVALRWGLQMGHSVLPK--SANEARLKENFDIFDWY 128 (146)
Q Consensus 85 ~a~~~~~s~~~lal~~~l~~~~~~i~g--~~~~~~l~~n~~a~~~~ 128 (146)
+.++-|+.. ||+++-..||.....| -=+.+.|++--+..+.|
T Consensus 163 Fv~~TgvD~--LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iP 206 (307)
T PRK05835 163 FVKESQVDY--LAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIP 206 (307)
T ss_pred HHHhhCCCE--EEEccCccccccCCCCCCccCHHHHHHHHHHhCCC
Confidence 777777764 5666655665332111 23455555544444433
No 137
>COG1992 Uncharacterized conserved protein [Function unknown]
Probab=31.15 E-value=1e+02 Score=21.85 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=29.3
Q ss_pred EeCCCCHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEeccC
Q 032162 14 GVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 14 GvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l 67 (146)
|.|.|....+..+.....---++.-+.| +.++++.|++.|..+..+-+-
T Consensus 70 GaS~H~Ar~lL~~~~~~p~iraa~NIrY-----~~~~v~~~~~~G~~v~~~dR~ 118 (181)
T COG1992 70 GASSHTARVLLTVMKHDPDIRAAINIRY-----SEEVVEALKDLGLAVSSFDRS 118 (181)
T ss_pred CchHHHHHHHHHHHhhCCCceEEeeecc-----cHHHHHHHHhcCceEEEeCcc
Confidence 4555555555554443321112223344 378999999999999987663
No 138
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=30.64 E-value=1.2e+02 Score=20.40 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=35.4
Q ss_pred hHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCc--HHHHHHHHHcCceEEEec
Q 032162 3 ALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYS 65 (146)
Q Consensus 3 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~~~~~~ 65 (146)
+|.+.| +.-+=+..-..+.+.++.+..++.-.+..-+|....+. ..+.+.|.++||.+..+.
T Consensus 61 ~L~~~g-~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~ 124 (165)
T PF00875_consen 61 SLRKLG-IPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFD 124 (165)
T ss_dssp HHHHTT-S-EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHhcC-cceEEEecchHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEEC
Confidence 344444 33333344466777777776665444455555554433 468889999999988764
No 139
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=30.61 E-value=2.2e+02 Score=22.27 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=11.0
Q ss_pred HHHHHHHHc--CceEEEeccCC
Q 032162 49 KLQAFCKSK--GVHLSGYSPLG 68 (146)
Q Consensus 49 ~~~~~~~~~--gi~~~~~~~l~ 68 (146)
.+.++++.. .|.++.|.|..
T Consensus 278 ~La~llk~l~~~VnLIPynp~~ 299 (355)
T TIGR00048 278 ELAELLKGTKCKVNLIPWNPFP 299 (355)
T ss_pred HHHHHHhcCCCceEEEecccCC
Confidence 355555543 45566666664
No 140
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=30.60 E-value=86 Score=23.20 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=27.1
Q ss_pred CHhHHHcCCccEEE-eCCCCHHHHHHHHHhCC----CCceEEecccCccCCcHHHHHHHHHc
Q 032162 1 MEALYDSGKARAIG-VSNFSLKKLGDLLEIAR----IPPAVNQVECHPAWQQTKLQAFCKSK 57 (146)
Q Consensus 1 l~~l~~~G~ir~iG-vS~~~~~~l~~~~~~~~----~~~~~~q~~~~~~~~~~~~~~~~~~~ 57 (146)
+++|+++| -.+| +|||+ .+++.++..++ +++.+.-.+-..-.+++.++.+|-++
T Consensus 122 lq~lR~~g--~~l~iisN~d-~r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~ 180 (237)
T KOG3085|consen 122 LQKLRKKG--TILGIISNFD-DRLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALER 180 (237)
T ss_pred HHHHHhCC--eEEEEecCCc-HHHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHH
Confidence 35778888 3445 44554 33344443333 22333333334444556677666655
No 141
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=30.15 E-value=2.3e+02 Score=22.91 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=38.6
Q ss_pred ccEEEeCC----CCHHHHHHHHHhCCCCceEEecccCc----cC---CcHHHHHHHHHcCceEEEec
Q 032162 10 ARAIGVSN----FSLKKLGDLLEIARIPPAVNQVECHP----AW---QQTKLQAFCKSKGVHLSGYS 65 (146)
Q Consensus 10 ir~iGvS~----~~~~~l~~~~~~~~~~~~~~q~~~~~----~~---~~~~~~~~~~~~gi~~~~~~ 65 (146)
++.++|.. .+++.+++.+...+++..++...++. .. +...++++|+++|+-+|-=-
T Consensus 201 ~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD 267 (459)
T COG1167 201 ARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDD 267 (459)
T ss_pred CcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeC
Confidence 46777764 57899999888766655665444421 11 12589999999999999733
No 142
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=30.10 E-value=2.5e+02 Score=21.31 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=33.1
Q ss_pred CccEEEeCCCCHH-------HHHHHHHhCCCCceEEecccCccCC----c----HHHHHHHHHcCceEEEeccCC
Q 032162 9 KARAIGVSNFSLK-------KLGDLLEIARIPPAVNQVECHPAWQ----Q----TKLQAFCKSKGVHLSGYSPLG 68 (146)
Q Consensus 9 ~ir~iGvS~~~~~-------~l~~~~~~~~~~~~~~q~~~~~~~~----~----~~~~~~~~~~gi~~~~~~~l~ 68 (146)
-=|++|+.+.++. .+++.....+ +.-+|+ ++..+ + ..+++.|+++|+.+..+....
T Consensus 97 pdrf~~~~~v~p~~~~~a~~E~er~v~~~g--f~g~~l--~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 97 PDRFVGFARVDPRDPEAAAEELERRVRELG--FVGVKL--HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred CcceeeeeeeCCCchHHHHHHHHHHHHhcC--ceEEEe--cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3478888887654 2333333322 233333 22221 1 359999999999999875553
No 143
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.01 E-value=86 Score=20.45 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=29.2
Q ss_pred cCCCHHHHHHhhcccCccCCHHHHHhhHhhhhhhc
Q 032162 111 KSANEARLKENFDIFDWYIPEDLLAKFPEIEQSLV 145 (146)
Q Consensus 111 g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~~~~ 145 (146)
-..+++.++.-+..-...+|+++++.|-.+.+++.
T Consensus 78 ~P~t~~ElRsIla~e~~~~s~E~l~~Ildiv~Ky~ 112 (114)
T COG1460 78 MPRTPDELRSILAKERVMLSDEELDKILDIVDKYR 112 (114)
T ss_pred CCCCHHHHHHHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 34788899999998888999999999988877653
No 144
>PRK06361 hypothetical protein; Provisional
Probab=29.88 E-value=2e+02 Score=20.24 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=7.4
Q ss_pred HHHHHHHHcCceEEE
Q 032162 49 KLQAFCKSKGVHLSG 63 (146)
Q Consensus 49 ~~~~~~~~~gi~~~~ 63 (146)
+++..|.++|+.+-.
T Consensus 126 ~~~~~~~~~~~~lEi 140 (212)
T PRK06361 126 EEAELAAENGVFLEI 140 (212)
T ss_pred HHHHHHHHcCeEEEE
Confidence 344555555544444
No 145
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=29.86 E-value=59 Score=18.65 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHhhhcC
Q 032162 80 PIVNTVAEKLGKSPAQVALRWGLQM 104 (146)
Q Consensus 80 ~~l~~~a~~~~~s~~~lal~~~l~~ 104 (146)
..+.++|.+||+++.+ ..+|.-..
T Consensus 24 ~sv~~va~~~gi~~~~-l~~W~~~~ 47 (76)
T PF01527_consen 24 ESVSEVAREYGISPST-LYNWRKQY 47 (76)
T ss_dssp CHHHHHHHHHTS-HHH-HHHHHHHH
T ss_pred CceEeeeccccccccc-ccHHHHHH
Confidence 4578899999997775 66787654
No 146
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=29.61 E-value=1.1e+02 Score=23.78 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=32.9
Q ss_pred hHHHcCCcc-EEEeCCCCHHHHHHHHHhCCCCceEEecccCcc---CCcHHHHHHHHHcCceEEEe
Q 032162 3 ALYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPA---WQQTKLQAFCKSKGVHLSGY 64 (146)
Q Consensus 3 ~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~~~~~ 64 (146)
+|+++..|. ..|=|-++...+..+++...+ +++|+....+ .....+..+|+++|+.++..
T Consensus 233 ~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~--d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~ 296 (365)
T cd03318 233 RLRSRNRVPIMADESVSGPADAFELARRGAA--DVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGG 296 (365)
T ss_pred HHHhhcCCCEEcCcccCCHHHHHHHHHhCCC--CeEEEeecccCCHHHHHHHHHHHHHcCCceeec
Confidence 344443333 344445666677666655332 5555554432 12246777778888777654
No 147
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=29.51 E-value=2.2e+02 Score=22.61 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHhCCCCceEE--------------ecccCccCC----c--HHHHHHHHHcCceEEEecc
Q 032162 16 SNFSLKKLGDLLEIARIPPAVN--------------QVECHPAWQ----Q--TKLQAFCKSKGVHLSGYSP 66 (146)
Q Consensus 16 S~~~~~~l~~~~~~~~~~~~~~--------------q~~~~~~~~----~--~~~~~~~~~~gi~~~~~~~ 66 (146)
+.|++++..++...++.+..+. ...||..+. + .++.+.|+++||.+-.|-.
T Consensus 79 ~~fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S 149 (384)
T smart00812 79 EKFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHS 149 (384)
T ss_pred hhCCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcC
Confidence 4577888888877776433333 223333322 2 5899999999999988743
No 148
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=29.43 E-value=7.9 Score=31.39 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHhhhcCC---cEEeec
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSPAQVALRWGLQMG---HSVLPK 111 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~~~lal~~~l~~~---~~~i~g 111 (146)
..-+.+++++||.++.+.-+.+ .++....--.++--||.|.+.-.++|++... .+.++|
T Consensus 80 NpEi~~A~e~~ipi~~r~e~La-----elm~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 80 NPEIVAALERGIPVISRAEMLA-----ELMRFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred CHHHHHHHHcCCCeEcHHHHHH-----HHHhCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 3456677777777776544321 1122111112333478999999999999874 456666
No 149
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=29.09 E-value=45 Score=18.86 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=21.5
Q ss_pred CCCHHHHHHhhcccCccCCHHHHHhhHhhhh
Q 032162 112 SANEARLKENFDIFDWYIPEDLLAKFPEIEQ 142 (146)
Q Consensus 112 ~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~ 142 (146)
+++.+-++.-++-....|+.+|+..+..+.+
T Consensus 6 css~dtLEkv~e~~~~~L~~~e~~~f~~AaD 36 (57)
T PF05321_consen 6 CSSLDTLEKVIEHNRYKLTDDELEAFNSAAD 36 (57)
T ss_dssp SS-HHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred cCCHhhHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence 5677777777777777899888887776554
No 150
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=29.05 E-value=2.3e+02 Score=22.74 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=35.8
Q ss_pred EEEeCCC-CHH--HHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEec
Q 032162 12 AIGVSNF-SLK--KLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYS 65 (146)
Q Consensus 12 ~iGvS~~-~~~--~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~ 65 (146)
.|++|-| +++ .+.+.+...+- .+.-..-|++..++++.....+.||.+++|.
T Consensus 34 ~i~~~~hl~~~Ta~l~~~L~~~GA--~v~~~~~np~stqd~vaaaL~~~gi~v~a~~ 88 (406)
T TIGR00936 34 RIAACLHVTVETAVLIETLVAGGA--EVAWTSCNPLSTQDDVAAALAKAGIPVFAWR 88 (406)
T ss_pred EEEEEEechHHHHHHHHHHHHcCC--EEEEEccCCccccHHHHHHHHhCCceEEEec
Confidence 5677765 332 23333344443 5566667888888999999999999999875
No 151
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=29.02 E-value=85 Score=17.59 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCceEEEeccC
Q 032162 48 TKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l 67 (146)
.+++..|+++|+..++..--
T Consensus 18 ~~~~~~a~~~g~~~v~iTDh 37 (67)
T smart00481 18 EELVKRAKELGLKAIAITDH 37 (67)
T ss_pred HHHHHHHHHcCCCEEEEeeC
Confidence 58999999999998886555
No 152
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=28.97 E-value=89 Score=17.48 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=16.4
Q ss_pred CcHHHHHHHHHhCCCHHHHHH
Q 032162 78 QNPIVNTVAEKLGKSPAQVAL 98 (146)
Q Consensus 78 ~~~~l~~~a~~~~~s~~~lal 98 (146)
+...+.-+++++|+|+.||.-
T Consensus 19 e~~ev~ywa~~~gvt~~~L~~ 39 (57)
T PF12244_consen 19 EPYEVRYWAKRFGVTEEQLRE 39 (57)
T ss_pred CHHHHHHHHHHHCcCHHHHHH
Confidence 346788899999999988654
No 153
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=28.89 E-value=1.1e+02 Score=19.47 Aligned_cols=34 Identities=9% Similarity=0.214 Sum_probs=27.2
Q ss_pred cCCCHHHHHHhhcccCccCCHHHHHhhHhhhhhh
Q 032162 111 KSANEARLKENFDIFDWYIPEDLLAKFPEIEQSL 144 (146)
Q Consensus 111 g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~~~ 144 (146)
..++++.++--+...+..+++++++.|-++..++
T Consensus 83 ~P~~~~El~~ii~~~~~r~~ee~l~~iL~~v~~~ 116 (117)
T PF03874_consen 83 RPTTAVELRAIIESLESRFSEEDLEEILDLVSKY 116 (117)
T ss_dssp --SSHHHHHHHSTTGTTTSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 3478889999999988899999998888776654
No 154
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=28.72 E-value=85 Score=23.51 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=35.2
Q ss_pred HHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHh----------CCCH------HHHH--HHhhhcC---CcE
Q 032162 49 KLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKL----------GKSP------AQVA--LRWGLQM---GHS 107 (146)
Q Consensus 49 ~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~----------~~s~------~~la--l~~~l~~---~~~ 107 (146)
++.+.|+++|+.++.+-+.. ..+++++++++.- |+|- .++. ++-+.+. |..
T Consensus 131 ~~~~~~~~~gl~~I~lv~p~--------t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~ 202 (259)
T PF00290_consen 131 ELREAAKKHGLDLIPLVAPT--------TPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVA 202 (259)
T ss_dssp HHHHHHHHTT-EEEEEEETT--------S-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EE
T ss_pred HHHHHHHHcCCeEEEEECCC--------CCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceE
Confidence 46666777777766654442 2356777777651 3322 2111 1112222 233
Q ss_pred EeecCCCHHHHHHhhcccC
Q 032162 108 VLPKSANEARLKENFDIFD 126 (146)
Q Consensus 108 ~i~g~~~~~~l~~n~~a~~ 126 (146)
+=.|.++++|+++-..-.+
T Consensus 203 vGFGI~~~e~~~~~~~~aD 221 (259)
T PF00290_consen 203 VGFGISTPEQAKKLAAGAD 221 (259)
T ss_dssp EESSS-SHHHHHHHHTTSS
T ss_pred EecCCCCHHHHHHHHccCC
Confidence 4458888888888765444
No 155
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=28.70 E-value=1.1e+02 Score=24.12 Aligned_cols=53 Identities=23% Similarity=0.174 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCC-------------CCCCC------------------c---HHHHHHHHHhCCCH
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKNT-------------HRVLQ------------------N---PIVNTVAEKLGKSP 93 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~~-------------~~~~~------------------~---~~l~~~a~~~~~s~ 93 (146)
+++++---..|+.++.|++=+-| +. ..+|. + ++++.+++.+|.||
T Consensus 79 P~lId~~fr~g~~~~~~gdsg~G-KttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 79 PQLIDEFFRKGYVSILYGDSGVG-KTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred hhhhhHHhhcCeeEEEecCCccc-HhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 78999999999999999886544 31 11222 1 57888999999999
Q ss_pred HHHHHHhh
Q 032162 94 AQVALRWG 101 (146)
Q Consensus 94 ~~lal~~~ 101 (146)
+++..=++
T Consensus 158 advrn~dl 165 (402)
T COG3598 158 ADVRNMDL 165 (402)
T ss_pred Hhhhheec
Confidence 98765554
No 156
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=28.61 E-value=2.5e+02 Score=21.40 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=20.5
Q ss_pred hHHHcCCc---cEEEeCCCCHHHHHHHHHhCCC
Q 032162 3 ALYDSGKA---RAIGVSNFSLKKLGDLLEIARI 32 (146)
Q Consensus 3 ~l~~~G~i---r~iGvS~~~~~~l~~~~~~~~~ 32 (146)
.+++.|.- ..+=|++|+.+.+..+.+....
T Consensus 161 ~l~~~~~~~~~~~v~i~SFd~~~L~~~~~~~~~ 193 (309)
T cd08602 161 TLKKYGYTGKKAPVFIQSFEVTNLKYLRNKTDL 193 (309)
T ss_pred HHHHcCCCCCCCCEEEECCCHHHHHHHHhhhCC
Confidence 34455553 3566999999999888776643
No 157
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=28.60 E-value=1.9e+02 Score=21.13 Aligned_cols=42 Identities=19% Similarity=0.102 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCCceEEecccCccCCc--HHHHHHHHHcCceEEEe
Q 032162 22 KLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGY 64 (146)
Q Consensus 22 ~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~~~~~ 64 (146)
.++++.+..++ |...+..||++.+. ...++.|.+.|+.-+..
T Consensus 67 ~~~~vr~~~~~-pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 67 LVKEIRKKNTI-PIVLMGYYNPILQYGLERFLRDAKEAGVDGLII 110 (242)
T ss_pred HHHHHhhcCCC-CEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEE
Confidence 33333333333 44566676776554 56677777776654443
No 158
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=28.60 E-value=2.5e+02 Score=21.31 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCCCceEEecccCccCCc------HHHHHHHHHcCceEEEe-ccCCCC--CC---CC-C-CCCcHHHHHH
Q 032162 20 LKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGY-SPLGSA--KN---TH-R-VLQNPIVNTV 85 (146)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~~~~~-~~l~~g--g~---~~-~-~~~~~~l~~~ 85 (146)
.+.+.++++. .+.++++.-|.+.-+ +++.++|+..|+.+-+= +-+++. +. .. . +.+++...++
T Consensus 87 ~e~i~~ai~~---GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~F 163 (284)
T PRK12737 87 LDDIKKKVRA---GIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEF 163 (284)
T ss_pred HHHHHHHHHc---CCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHH
Confidence 4444444443 356777766654422 58999999999998872 333221 10 00 1 3345677778
Q ss_pred HHHhCCCHHHHHHHhhhcCC
Q 032162 86 AEKLGKSPAQVALRWGLQMG 105 (146)
Q Consensus 86 a~~~~~s~~~lal~~~l~~~ 105 (146)
.++.|+. .||.++-..||
T Consensus 164 v~~TgvD--~LAvaiGt~HG 181 (284)
T PRK12737 164 VERTGID--SLAVAIGTAHG 181 (284)
T ss_pred HHHhCCC--EEeeccCcccc
Confidence 8777775 34444444444
No 159
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=28.60 E-value=2.5e+02 Score=20.92 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=36.4
Q ss_pred EEeCCCCHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEecc
Q 032162 13 IGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSP 66 (146)
Q Consensus 13 iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 66 (146)
+-+=+++++.++..++.+...+.+|-+.... .+.+.+++.++++|..++.+.-
T Consensus 72 lsIDT~~~~v~eaaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 72 LCIDSPNPAAIEAGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred EEEeCCCHHHHHHHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 5566788999999998754344444443321 2346889999999999998653
No 160
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=28.48 E-value=83 Score=24.52 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=16.2
Q ss_pred cHHHHHHHHHcCceEEEec
Q 032162 47 QTKLQAFCKSKGVHLSGYS 65 (146)
Q Consensus 47 ~~~~~~~~~~~gi~~~~~~ 65 (146)
.+++++.|+++||.|++--
T Consensus 48 p~~~idaAHknGV~Vlgti 66 (339)
T cd06547 48 PADWINAAHRNGVPVLGTF 66 (339)
T ss_pred CcHHHHHHHhcCCeEEEEE
Confidence 3689999999999998843
No 161
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=28.44 E-value=2.5e+02 Score=24.63 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHcCceEEEeccCCCCCCC
Q 032162 46 QQTKLQAFCKSKGVHLSGYSPLGSAKNT 73 (146)
Q Consensus 46 ~~~~~~~~~~~~gi~~~~~~~l~~gg~~ 73 (146)
.-.+..+||++.|..+|.-..+++||++
T Consensus 172 t~~EA~eF~k~yG~PvI~KAAyGGGGRG 199 (1176)
T KOG0369|consen 172 TVEEALEFVKEYGLPVIIKAAYGGGGRG 199 (1176)
T ss_pred cHHHHHHHHHhcCCcEEEeecccCCCcc
Confidence 3368999999999999999999998764
No 162
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=28.07 E-value=2.7e+02 Score=21.16 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=48.2
Q ss_pred CHHHHHHHHHhCCCCceEEecccCccCCc------HHHHHHHHHcCceEEEe-ccCCCCCCC-------CCCCCcHHHHH
Q 032162 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGY-SPLGSAKNT-------HRVLQNPIVNT 84 (146)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~~~~~-~~l~~gg~~-------~~~~~~~~l~~ 84 (146)
+.+.+.++++. .+.++++.=|.+.-+ .++.++|+..|+.+-+= +-++++.-. ..+.+++...+
T Consensus 86 ~~e~i~~Ai~~---GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~ 162 (284)
T PRK09195 86 KFDDIAQKVRS---GVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQARE 162 (284)
T ss_pred CHHHHHHHHHc---CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHH
Confidence 45566666654 357777777655432 58999999999988772 333322100 01334566777
Q ss_pred HHHHhCCCHHHHHHHhhhcCC
Q 032162 85 VAEKLGKSPAQVALRWGLQMG 105 (146)
Q Consensus 85 ~a~~~~~s~~~lal~~~l~~~ 105 (146)
+.++.|+. .+|.++-..||
T Consensus 163 Fv~~TgvD--~LAvaiGt~HG 181 (284)
T PRK09195 163 FVEATGID--SLAVAIGTAHG 181 (284)
T ss_pred HHHHHCcC--EEeeccCcccc
Confidence 77777764 34444444444
No 163
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.01 E-value=2.2e+02 Score=20.99 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=36.7
Q ss_pred hHHHcCCccEEEeCCCCH-HHHHHHHHhCC----CCceEEecccC-----------------ccCC-----cHHHHHHHH
Q 032162 3 ALYDSGKARAIGVSNFSL-KKLGDLLEIAR----IPPAVNQVECH-----------------PAWQ-----QTKLQAFCK 55 (146)
Q Consensus 3 ~l~~~G~ir~iGvS~~~~-~~l~~~~~~~~----~~~~~~q~~~~-----------------~~~~-----~~~~~~~~~ 55 (146)
.+++.|.-..+=+++|+. +.+..+.+... ++......... .+.. .++++..++
T Consensus 141 ~l~~~~~~~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~ 220 (265)
T cd08564 141 LVEKYGMILQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKSPSPLDFLEQAKYYNATWVNFSYDFWTEEFVKKAH 220 (265)
T ss_pred HHHHcCCCCCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCCcccccHHHHHHhcCCceeeechhhhhHHHHHHHH
Confidence 455667667788888888 77776655443 21111110000 0011 257788888
Q ss_pred HcCceEEEec
Q 032162 56 SKGVHLSGYS 65 (146)
Q Consensus 56 ~~gi~~~~~~ 65 (146)
++|+.+.+|.
T Consensus 221 ~~Gl~v~~wT 230 (265)
T cd08564 221 ENGLKVMTYF 230 (265)
T ss_pred HcCCEEEEec
Confidence 8888888886
No 164
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.00 E-value=2.8e+02 Score=21.70 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=10.0
Q ss_pred HHHHHHHHc--CceEEEeccCC
Q 032162 49 KLQAFCKSK--GVHLSGYSPLG 68 (146)
Q Consensus 49 ~~~~~~~~~--gi~~~~~~~l~ 68 (146)
.+.++++.. .|.++.|.|++
T Consensus 270 ~L~~ll~~l~~~vnlIPyn~~~ 291 (349)
T PRK14463 270 RLVRLLSDIPSKVNLIPFNEHE 291 (349)
T ss_pred HHHHHHhccCceEEEEecCCCC
Confidence 445555443 34555555553
No 165
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=27.94 E-value=3.4e+02 Score=22.29 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=42.9
Q ss_pred HHHHHHH-HHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCC------CHHHHHH-----------------Hhhhc
Q 032162 48 TKLQAFC-KSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGK------SPAQVAL-----------------RWGLQ 103 (146)
Q Consensus 48 ~~~~~~~-~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~------s~~~lal-----------------~~~l~ 103 (146)
..+..++ ++.++-++. ||- .--+...|.++|.+.|. ++.++-- .|+-.
T Consensus 353 dA~~~L~~~~vDlmiVV-----GG~---NSSNT~~L~eIa~~~g~~sy~Ie~~~eI~~~~~i~h~~~~~e~~~~~~wl~~ 424 (460)
T PLN02821 353 DAMYKLVEEKLDLMLVV-----GGW---NSSNTSHLQEIAEHKGIPSYWIDSEERIGPGNTIAHKLNHGELVEKENWLPE 424 (460)
T ss_pred HHHHHHhhcCCCEEEEE-----CCC---CCccHHHHHHHHHHhCCCEEEECCHHHcCcccccccccccchhhhhHHHhcc
Confidence 4688885 567877776 331 11224779999988774 3445443 58754
Q ss_pred CC--cEEeecCCCHHHHHHhh
Q 032162 104 MG--HSVLPKSANEARLKENF 122 (146)
Q Consensus 104 ~~--~~~i~g~~~~~~l~~n~ 122 (146)
.. +-+..|+|+|+.+-+.+
T Consensus 425 ~~~~VGITAGASTPd~lIeeV 445 (460)
T PLN02821 425 GPVTIGVTSGASTPDKVVEDV 445 (460)
T ss_pred CCCEEEEecCCCCCHHHHHHH
Confidence 34 45678999999776544
No 166
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=27.93 E-value=34 Score=22.09 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=22.8
Q ss_pred cHHHHHHHHHhC------CC-HHHHHHHhhhcCC-cEEeecCCCHHHHHHhhcccCccCCHHHHHhhHhhhhhh
Q 032162 79 NPIVNTVAEKLG------KS-PAQVALRWGLQMG-HSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQSL 144 (146)
Q Consensus 79 ~~~l~~~a~~~~------~s-~~~lal~~~l~~~-~~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~~~ 144 (146)
.+.+.++.++|. +| .++++||-+..+| +--.||.++.+-..+. +|+++....|+.+.+.+
T Consensus 11 ~~ni~kl~~~~~~~~vVp~SA~aEl~Lr~a~k~g~I~Y~pGd~~F~i~~~~------~l~~~q~~~Le~I~~~v 78 (109)
T PF08438_consen 11 DENIEKLKEKYPDEPVVPTSAAAELALRKAAKAGLIDYIPGDSDFEITDDD------KLSDKQKKALEKIRDNV 78 (109)
T ss_dssp HHHHHHHHHHHTT-EEEEE-HHHHHHHHS-SSS----S----------------------------TTHHHHHH
T ss_pred HhHHHHHHHhCCCCceeeccHHHHHHHHHHHHCCCEEeCCCCCceEeeccc------ccCHHHHHHHHHHHHHH
Confidence 356677777664 12 2588998888888 4568888777754443 68888888888887743
No 167
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=27.91 E-value=2e+02 Score=19.68 Aligned_cols=29 Identities=34% Similarity=0.233 Sum_probs=17.1
Q ss_pred HhHHHcCCccEEEeCCCCHHHHHHHHHhCC
Q 032162 2 EALYDSGKARAIGVSNFSLKKLGDLLEIAR 31 (146)
Q Consensus 2 ~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~ 31 (146)
++|++.| ++-.-+||.+...++..++..+
T Consensus 102 ~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~g 130 (198)
T TIGR01428 102 RALKERG-YRLAILSNGSPAMLKSLVKHAG 130 (198)
T ss_pred HHHHHCC-CeEEEEeCCCHHHHHHHHHHCC
Confidence 4566665 4445566666666666665544
No 168
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=27.84 E-value=2.1e+02 Score=22.96 Aligned_cols=52 Identities=8% Similarity=0.022 Sum_probs=34.6
Q ss_pred EeCCCCHHHHHHHHHhCCCCceEEecccCccC---CcHHHHHHHHHcCceEEEeccC
Q 032162 14 GVSNFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 14 GvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~~~~~~~l 67 (146)
+=|-++.+.+.++++..-. +++|+..+-+- ...++.++|+++||.++..+..
T Consensus 303 DEs~~t~~d~~~~i~~~a~--d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 303 DEWCNTVEDVKFFTDAKAG--HMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred cCCCCCHHHHHHHHHhCCC--CEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 4445677777777765433 67777665432 2257888999999888886554
No 169
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.64 E-value=1.9e+02 Score=22.44 Aligned_cols=61 Identities=21% Similarity=0.158 Sum_probs=35.0
Q ss_pred hHHHcCCcc-EEEeCCCCHHHHHHHHHhCCCCceEEecccCccC---CcHHHHHHHHHcCceEEEec
Q 032162 3 ALYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSGYS 65 (146)
Q Consensus 3 ~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~~~~~~ 65 (146)
+|++..-+. ..|=|.+++..+..+.+... .+++|.....+- ....+...|+++|+.++..+
T Consensus 221 ~L~~~~~~pia~dEs~~~~~~~~~~~~~~~--~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 221 EIAARTTIPIATGERLFSRWDFKELLEDGA--VDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHhCCCCEEecccccCHHHHHHHHHhCC--CCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 344443333 34445567777777765433 366666544321 22478888888888877654
No 170
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=27.63 E-value=56 Score=24.47 Aligned_cols=29 Identities=7% Similarity=-0.053 Sum_probs=21.9
Q ss_pred eEEecccCccCCc--HHHHHHHHHcCceEEE
Q 032162 35 AVNQVECHPAWQQ--TKLQAFCKSKGVHLSG 63 (146)
Q Consensus 35 ~~~q~~~~~~~~~--~~~~~~~~~~gi~~~~ 63 (146)
+++++....+... .+++++|++.||.++.
T Consensus 131 DavLLI~~~L~~~~l~el~~~A~~LGm~~LV 161 (254)
T COG0134 131 DAVLLIVAALDDEQLEELVDRAHELGMEVLV 161 (254)
T ss_pred ccHHHHHHhcCHHHHHHHHHHHHHcCCeeEE
Confidence 4555555566555 6899999999999887
No 171
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=27.54 E-value=1.4e+02 Score=23.26 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=35.5
Q ss_pred hHHHcCCcc-EEEeCCCCHHHHHHHHHhCCCCceEEecccCccC---CcHHHHHHHHHcCceEEEeccC
Q 032162 3 ALYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 3 ~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~~~~~~~l 67 (146)
+|++...+. ..|=|-++...+..+++...+ +++|+....+- ....+...|+.+|+.++..+..
T Consensus 232 ~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~--d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~ 298 (368)
T TIGR02534 232 RLTRRFNVPIMADESVTGPADALAIAKASAA--DVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTML 298 (368)
T ss_pred HHHHhCCCCEEeCcccCCHHHHHHHHHhCCC--CEEEEcccccCCHHHHHHHHHHHHHcCCceeeecch
Confidence 344444333 445556677777766655433 56665554321 1246777778888887665433
No 172
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=27.50 E-value=2.5e+02 Score=20.47 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=20.5
Q ss_pred HHHcCCc------cEEEeCCCCHHHHHHHHHhCC
Q 032162 4 LYDSGKA------RAIGVSNFSLKKLGDLLEIAR 31 (146)
Q Consensus 4 l~~~G~i------r~iGvS~~~~~~l~~~~~~~~ 31 (146)
+++.|.. +.+=+++|+++.+..+.+...
T Consensus 135 l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p 168 (256)
T cd08601 135 LDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNP 168 (256)
T ss_pred HHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCC
Confidence 3445555 677889999999988877653
No 173
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.29 E-value=2.8e+02 Score=21.80 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=11.7
Q ss_pred HHHHHHHHc--CceEEEeccCCC
Q 032162 49 KLQAFCKSK--GVHLSGYSPLGS 69 (146)
Q Consensus 49 ~~~~~~~~~--gi~~~~~~~l~~ 69 (146)
.+.++++.. .|.++.|.|..+
T Consensus 283 ~La~llk~l~~~VnLIPyn~~~~ 305 (356)
T PRK14462 283 KLVKLLNGIKAKVNLILFNPHEG 305 (356)
T ss_pred HHHHHHhhcCcEEEEEeCCCCCC
Confidence 355555543 466677777643
No 174
>PRK13561 putative diguanylate cyclase; Provisional
Probab=27.08 E-value=2e+02 Score=24.14 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=48.8
Q ss_pred HhHHHcCCccEEEeCCCC--HHHHHHHHHhCCCCceEEecccCccC---Cc----HHHHHHHHHcCceEEEeccCCCCCC
Q 032162 2 EALYDSGKARAIGVSNFS--LKKLGDLLEIARIPPAVNQVECHPAW---QQ----TKLQAFCKSKGVHLSGYSPLGSAKN 72 (146)
Q Consensus 2 ~~l~~~G~ir~iGvS~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~---~~----~~~~~~~~~~gi~~~~~~~l~~gg~ 72 (146)
++|++.|- .|++..|+ ...+..+......+++.+-+.-+... .+ ..++..|+..|+.+++- |
T Consensus 541 ~~l~~~G~--~i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAe-----g-- 611 (651)
T PRK13561 541 RPLRNAGV--RVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAE-----G-- 611 (651)
T ss_pred HHHHHCCC--EEEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEe-----c--
Confidence 45666676 56666664 34444444433345666655443322 12 46899999999999993 2
Q ss_pred CCCCCCcHHHHHHHHHhCCCHHH
Q 032162 73 THRVLQNPIVNTVAEKLGKSPAQ 95 (146)
Q Consensus 73 ~~~~~~~~~l~~~a~~~~~s~~~ 95 (146)
.+.+.-.+.+.+.|+.-.|
T Consensus 612 ----VE~~~~~~~l~~~g~d~~Q 630 (651)
T PRK13561 612 ----VETEAQRDWLLKAGVGIAQ 630 (651)
T ss_pred ----CCCHHHHHHHHhcCCCEEe
Confidence 3345555666667776655
No 175
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=27.07 E-value=1.6e+02 Score=22.62 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=28.4
Q ss_pred HHHcCCcc-EEEeCCCCHHHHHHHHHhCCCCceEEecccCccC---CcHHHHHHHHHcCceEEE
Q 032162 4 LYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSG 63 (146)
Q Consensus 4 l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~~~~ 63 (146)
|++...|. ..|=|.++...+..+++... .+++|...+.+- ....+...|+.+|+.++.
T Consensus 217 l~~~~~~pIa~gE~~~~~~~~~~~i~~~a--~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~ 278 (341)
T cd03327 217 LKKATGIPISTGEHEYTVYGFKRLLEGRA--VDILQPDVNWVGGITELKKIAALAEAYGVPVVP 278 (341)
T ss_pred HHhcCCCCeEeccCccCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCeecc
Confidence 34443333 33444456666666655432 255555443321 124566666666666554
No 176
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=26.99 E-value=1.8e+02 Score=22.16 Aligned_cols=71 Identities=10% Similarity=0.125 Sum_probs=41.9
Q ss_pred CHHHHHHHHHhCCCCceEEecccCccCCc------HHHHHHHHHcCceEEEe-ccCCCC--CCC--C-CCCCcHHHHHHH
Q 032162 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGY-SPLGSA--KNT--H-RVLQNPIVNTVA 86 (146)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~~~~~-~~l~~g--g~~--~-~~~~~~~l~~~a 86 (146)
+.+.+.++++. .+.++++.=|.+.-+ +++.++|+..|+.+-+= +-+++. +.. . .+.+++...++.
T Consensus 89 ~~e~i~~ai~~---GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv 165 (285)
T PRK07709 89 SFEKCKEAIDA---GFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLV 165 (285)
T ss_pred CHHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHH
Confidence 34555555543 457777776654422 58999999999998872 334322 100 0 133456666777
Q ss_pred HHhCCC
Q 032162 87 EKLGKS 92 (146)
Q Consensus 87 ~~~~~s 92 (146)
++-|+.
T Consensus 166 ~~TgvD 171 (285)
T PRK07709 166 EATGID 171 (285)
T ss_pred HHhCCC
Confidence 666664
No 177
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=26.82 E-value=1.8e+02 Score=18.80 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHhCCCCceEEec--ccC-ccCCcHHHHHHHHHcCceEEEecc
Q 032162 17 NFSLKKLGDLLEIARIPPAVNQV--ECH-PAWQQTKLQAFCKSKGVHLSGYSP 66 (146)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~~~q~--~~~-~~~~~~~~~~~~~~~gi~~~~~~~ 66 (146)
..++++++.+++.. |+++-+ .-. .+...+++..+++++||+++.|..
T Consensus 45 ~l~~~~l~~ll~~~---peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T 94 (117)
T cd05126 45 GLQPEELEELLEEG---VEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPT 94 (117)
T ss_pred cCCHHHHHHHHhcC---CCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcCh
Confidence 45788888888652 454433 223 233467888899999999998643
No 178
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=26.76 E-value=51 Score=19.93 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=16.8
Q ss_pred CCcEEeecCCCHHHHHHhhcc
Q 032162 104 MGHSVLPKSANEARLKENFDI 124 (146)
Q Consensus 104 ~~~~~i~g~~~~~~l~~n~~a 124 (146)
.|.+++.|+++++++++.++-
T Consensus 57 sGki~itGaks~~~~~~a~~~ 77 (86)
T PF00352_consen 57 SGKIVITGAKSEEEAKKAIEK 77 (86)
T ss_dssp TSEEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEEecCCHHHHHHHHHH
Confidence 356788899999999887654
No 179
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=26.53 E-value=98 Score=25.78 Aligned_cols=35 Identities=26% Similarity=0.532 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhC
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLG 90 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~ 90 (146)
.+++++|+.|| ++-|-.+| ...+.--+.+-|++||
T Consensus 389 q~vI~~ck~nG----afdPttmG----sVpNVGLMAqkAeEYG 423 (744)
T COG2838 389 QEVIDFCKTNG----AFDPTTMG----TVPNVGLMAQKAEEYG 423 (744)
T ss_pred HHHHHHHHhcC----CcCccccc----CCCchHHHHHHHHHhC
Confidence 47999999999 67777666 2223333444555554
No 180
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=26.31 E-value=2.4e+02 Score=19.95 Aligned_cols=63 Identities=3% Similarity=-0.040 Sum_probs=37.2
Q ss_pred HHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEeccc-------------Cc--cCCcHHHHHHHHHcCceEEEecc
Q 032162 4 LYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVEC-------------HP--AWQQTKLQAFCKSKGVHLSGYSP 66 (146)
Q Consensus 4 l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~-------------~~--~~~~~~~~~~~~~~gi~~~~~~~ 66 (146)
+.+.|.-..+=+++|+.+.+..+.+...--+...-..+ ++ ..-.++++..++++|+.+.+|..
T Consensus 121 l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~~wtv 198 (220)
T cd08579 121 YKQNLIENQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIGNLPKTNVDFYSIEYSTLNKEFIRQAHQNGKKVYVWTV 198 (220)
T ss_pred HHHcCCCcCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccCcccccCceEEeeehhhcCHHHHHHHHHCCCEEEEEcC
Confidence 44556555666888999988888764431111110000 00 01125788999999999999854
No 181
>PRK12302 bssR biofilm formation regulatory protein BssR; Reviewed
Probab=26.21 E-value=72 Score=20.51 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCCHHHHHHhhccc-----------CccCCHHHHHhhHhhhhhh
Q 032162 112 SANEARLKENFDIF-----------DWYIPEDLLAKFPEIEQSL 144 (146)
Q Consensus 112 ~~~~~~l~~n~~a~-----------~~~L~~~~~~~l~~~~~~~ 144 (146)
.+..+|+++|+=-+ +..++++||..|....+.+
T Consensus 36 VSEsdhLRdN~FeL~re~~~~s~~l~~h~d~eE~~aL~~A~~aL 79 (127)
T PRK12302 36 VSESDHLRDNFFELNRELHDKSLRLNLHLDQEEWSALRHAEEAL 79 (127)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHHHhccCCHHHHHHHHHHHHHH
Confidence 46778888887222 2379999999998776543
No 182
>PF04567 RNA_pol_Rpb2_5: RNA polymerase Rpb2, domain 5; InterPro: IPR007647 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 5, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=25.84 E-value=51 Score=17.69 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=12.3
Q ss_pred HhHHHcCCccEEEeC
Q 032162 2 EALYDSGKARAIGVS 16 (146)
Q Consensus 2 ~~l~~~G~ir~iGvS 16 (146)
..|.++|.|-+||+-
T Consensus 2 ~~ll~~G~vE~id~e 16 (48)
T PF04567_consen 2 DDLLKEGVVEYIDAE 16 (48)
T ss_dssp HHHHHTTSEEEEETT
T ss_pred hhHhhCCCEEEecch
Confidence 568899999999864
No 183
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=25.72 E-value=15 Score=20.44 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=10.0
Q ss_pred CcHHHHHHHHHhCCCHHHH
Q 032162 78 QNPIVNTVAEKLGKSPAQV 96 (146)
Q Consensus 78 ~~~~l~~~a~~~~~s~~~l 96 (146)
.-+.+..+|+-.|+++.++
T Consensus 39 ~~~~l~~ia~~l~~~~~el 57 (63)
T PF13443_consen 39 SLDTLEKIAKALNCSPEEL 57 (63)
T ss_dssp -HHHHHHHHHHHT--HHHC
T ss_pred cHHHHHHHHHHcCCCHHHH
Confidence 3356666666666666653
No 184
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=25.61 E-value=67 Score=26.71 Aligned_cols=79 Identities=18% Similarity=0.082 Sum_probs=47.9
Q ss_pred CceEEEeccCCCCCCC------CCCCCcHHHHHHHHHhCCCH---HHHHHHhhhcCCcEEeecCCCHHHHHHhhcccCcc
Q 032162 58 GVHLSGYSPLGSAKNT------HRVLQNPIVNTVAEKLGKSP---AQVALRWGLQMGHSVLPKSANEARLKENFDIFDWY 128 (146)
Q Consensus 58 gi~~~~~~~l~~gg~~------~~~~~~~~l~~~a~~~~~s~---~~lal~~~l~~~~~~i~g~~~~~~l~~n~~a~~~~ 128 (146)
|.....|+||+.|... +.. ..+++.++.++|+++. +--++|-+.+.+. +.......|+-...+. -|
T Consensus 227 g~~~~v~~pL~~Gat~~~~eg~p~~-~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~---~~~~dlssLr~~~SaG-EP 301 (528)
T COG0365 227 GLWYSVFSPLASGATTVLYDGRPFY-SPERLWEALEKYKVTIFGTSPTFLRRLMKLGL---GEPYDLSSLRVLGSAG-EP 301 (528)
T ss_pred CchHHHHHHHhcCCeEEEeCCCCCC-CHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC---cccccchhheeeeccC-CC
Confidence 3344456777666221 222 4678999999998743 2347777777765 3333344444444443 38
Q ss_pred CCHHHHHhhHhhh
Q 032162 129 IPEDLLAKFPEIE 141 (146)
Q Consensus 129 L~~~~~~~l~~~~ 141 (146)
|++|.++...+..
T Consensus 302 Lnpe~~~w~~~~~ 314 (528)
T COG0365 302 LNPEAFEWFYSAL 314 (528)
T ss_pred CCHHHHHHHHHHh
Confidence 9999988877654
No 185
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=25.57 E-value=2.7e+02 Score=21.55 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHhCCCCceEEecccCccCCc-HHHHHHHHHcCceEEEecc
Q 032162 18 FSLKKLGDLLEIARIPPAVNQVECHPAWQQ-TKLQAFCKSKGVHLSGYSP 66 (146)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~~~~~~~ 66 (146)
.+++.+++.+...+.+..+.....+....+ .++.+.|+++|+-++.=..
T Consensus 148 id~~~l~~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a 197 (402)
T cd00378 148 IDYDALEKMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMA 197 (402)
T ss_pred cCHHHHHHHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEcc
Confidence 378888887754333333332323332223 6899999999987776443
No 186
>PLN02494 adenosylhomocysteinase
Probab=25.52 E-value=2.6e+02 Score=23.09 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=38.9
Q ss_pred EEEeCCC-CH--HHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEeccC
Q 032162 12 AIGVSNF-SL--KKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 12 ~iGvS~~-~~--~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l 67 (146)
.||.|-| ++ ..+.+.+...+- .+.-..-|++..++++.....+.||.+.+|..-
T Consensus 48 ~i~~~lHl~~kTa~L~~tL~~~GA--~v~~~~~Np~sTqd~vaaal~~~gi~vfa~~g~ 104 (477)
T PLN02494 48 RITGSLHMTIQTAVLIETLTALGA--EVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGE 104 (477)
T ss_pred EEEEEEechHHHHHHHHHHHHcCC--EEEEEcCCCccchHHHHHHHHhCCceEEEecCC
Confidence 6788876 32 233333444443 667778899999999999999999999998654
No 187
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=25.48 E-value=3e+02 Score=20.87 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCCceEEecccCccCCc------HHHHHHHHHcCceEEEe-ccCCCC--CC---C--CCCCCcHHHHHH
Q 032162 20 LKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGY-SPLGSA--KN---T--HRVLQNPIVNTV 85 (146)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~~~~~-~~l~~g--g~---~--~~~~~~~~l~~~ 85 (146)
.+.+.++++. .+.++++.=|.+.-+ .++.++|+..|+.+-+= +-++++ +. . ..+.+++...++
T Consensus 85 ~e~i~~ai~~---GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~F 161 (282)
T TIGR01858 85 LDDIRQKVHA---GVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEF 161 (282)
T ss_pred HHHHHHHHHc---CCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHH
Confidence 4445555443 357777766655432 58999999999988772 333221 10 0 013345677778
Q ss_pred HHHhCCCHHHHHHHhhhcCC
Q 032162 86 AEKLGKSPAQVALRWGLQMG 105 (146)
Q Consensus 86 a~~~~~s~~~lal~~~l~~~ 105 (146)
.++.|++. ||.++-..||
T Consensus 162 v~~TgvD~--LAvaiGt~HG 179 (282)
T TIGR01858 162 VEATGVDS--LAVAIGTAHG 179 (282)
T ss_pred HHHHCcCE--EecccCcccc
Confidence 77777753 4444544454
No 188
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=25.46 E-value=68 Score=17.01 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=15.2
Q ss_pred CCCHHHHHHhhcccCccCCHHHH
Q 032162 112 SANEARLKENFDIFDWYIPEDLL 134 (146)
Q Consensus 112 ~~~~~~l~~n~~a~~~~L~~~~~ 134 (146)
+.+++++-.-.+...+.+|++|+
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCHHHh
Confidence 45666666666666677777665
No 189
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=25.44 E-value=1.3e+02 Score=21.57 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=30.7
Q ss_pred CCccEEEeC-CCCHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHH
Q 032162 8 GKARAIGVS-NFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKS 56 (146)
Q Consensus 8 G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 56 (146)
+.++.+||. |-+++.+.++.+..+ ++++|++-+ ..++.+...++
T Consensus 51 ~~~~~VgVf~~~~~~~i~~~~~~~~--~d~vQLHG~---e~~~~~~~l~~ 95 (207)
T PRK13958 51 NHIDKVCVVVNPDLTTIEHILSNTS--INTIQLHGT---ESIDFIQEIKK 95 (207)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhCC--CCEEEECCC---CCHHHHHHHhh
Confidence 558889986 688999999988754 599998753 23444444443
No 190
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=25.41 E-value=33 Score=19.74 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=13.4
Q ss_pred CHhHHHcCCccEEEeCCC
Q 032162 1 MEALYDSGKARAIGVSNF 18 (146)
Q Consensus 1 l~~l~~~G~ir~iGvS~~ 18 (146)
|+.|++.|+|+.+..++.
T Consensus 35 L~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 35 LEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp HHHHHCCTSCEEEEEE--
T ss_pred HHHHHHCCcEEEecCCCC
Confidence 467899999999876654
No 191
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=25.34 E-value=76 Score=14.40 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=9.8
Q ss_pred cCCHHHHHhhHhhh
Q 032162 128 YIPEDLLAKFPEIE 141 (146)
Q Consensus 128 ~L~~~~~~~l~~~~ 141 (146)
|+++++.+++.+..
T Consensus 9 PMSPddy~~l~~~V 22 (23)
T PF12162_consen 9 PMSPDDYDELERMV 22 (23)
T ss_dssp -S-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999887653
No 192
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.18 E-value=3e+02 Score=21.54 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=24.2
Q ss_pred HHHHHHHHHc--CceEEEeccCCCCCCCCCCCCc---HHHHHHHHHhCCCH
Q 032162 48 TKLQAFCKSK--GVHLSGYSPLGSAKNTHRVLQN---PIVNTVAEKLGKSP 93 (146)
Q Consensus 48 ~~~~~~~~~~--gi~~~~~~~l~~gg~~~~~~~~---~~l~~~a~~~~~s~ 93 (146)
..+.++++.. .|.++.|.|++.. ++.. ... ..+.+++.++|++.
T Consensus 281 ~~La~ll~~l~~~VnLIPynp~~~~-ky~~-ps~e~l~~f~~~L~~~gi~v 329 (356)
T PRK14455 281 EELADLLKGIKCHVNLIPVNPVPER-DYVR-TPKEDIFAFEDTLKKNGVNC 329 (356)
T ss_pred HHHHHHHhcCCCcEEEEecCcCCCC-CCcC-CCHHHHHHHHHHHHHCCCcE
Confidence 3566777665 5777788888543 2211 111 34555566666543
No 193
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=25.08 E-value=1.4e+02 Score=23.48 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=27.3
Q ss_pred EEeCCCC----HHHHHHHHHhC-CCCceEEecccCccCCc--------HHHHHHHHHcCceEEEe
Q 032162 13 IGVSNFS----LKKLGDLLEIA-RIPPAVNQVECHPAWQQ--------TKLQAFCKSKGVHLSGY 64 (146)
Q Consensus 13 iGvS~~~----~~~l~~~~~~~-~~~~~~~q~~~~~~~~~--------~~~~~~~~~~gi~~~~~ 64 (146)
+|+|-|. .+.....++.+ ...+..+-+.++....+ .+++.+|+++|+.+++=
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~D 66 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIAD 66 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEE
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 6888662 34444444333 23334443333333221 47999999999999984
No 194
>PRK15456 universal stress protein UspG; Provisional
Probab=25.02 E-value=2e+02 Score=18.53 Aligned_cols=22 Identities=5% Similarity=0.136 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCceEEEeccCCC
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGS 69 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~ 69 (146)
.++.++++++++.++.++.-+.
T Consensus 95 ~~I~~~a~~~~~DLIVmG~~g~ 116 (142)
T PRK15456 95 DEVNELAEELGADVVVIGSRNP 116 (142)
T ss_pred HHHHHHHhhcCCCEEEEcCCCC
Confidence 5799999999999999988754
No 195
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=25.01 E-value=2.5e+02 Score=21.39 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=35.5
Q ss_pred HhHHHcCCccEEEeCCCC------------HHHHHHHHHhCCCCceEEecccCccCCc--HHHHHHHHHcCc
Q 032162 2 EALYDSGKARAIGVSNFS------------LKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGV 59 (146)
Q Consensus 2 ~~l~~~G~ir~iGvS~~~------------~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi 59 (146)
++++.+|++-.||=+.++ .+.++.+.+.+.---..+|+.---.... .++-.++++.|+
T Consensus 114 ~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~ 185 (285)
T COG1831 114 AKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGI 185 (285)
T ss_pred HHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCC
Confidence 578999998888766532 2334555555542224445544333333 578889999986
No 196
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=24.93 E-value=3.2e+02 Score=20.98 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=39.1
Q ss_pred hHHHcCCccEEEeCC----CCHHHH----HHHHHhCCCCceEEecccCccCC---c-HHHHHHHHHcCceEEEeccCCCC
Q 032162 3 ALYDSGKARAIGVSN----FSLKKL----GDLLEIARIPPAVNQVECHPAWQ---Q-TKLQAFCKSKGVHLSGYSPLGSA 70 (146)
Q Consensus 3 ~l~~~G~ir~iGvS~----~~~~~l----~~~~~~~~~~~~~~q~~~~~~~~---~-~~~~~~~~~~gi~~~~~~~l~~g 70 (146)
.+..-..++.+|+.+ ..+..+ .+.+...+. ..+.++.+|-... . .+.+..+++.|+.+....++..|
T Consensus 167 ~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~-~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkg 245 (321)
T TIGR03821 167 LLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRL-QTVLVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRG 245 (321)
T ss_pred HHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCC-cEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCC
Confidence 344556777777764 323322 122233332 2333456654321 1 46888899999999999999775
No 197
>PRK10206 putative oxidoreductase; Provisional
Probab=24.86 E-value=2.4e+02 Score=21.71 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCC
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGK 91 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~ 91 (146)
.++.-.|-++|..|++=.|++.. .-+-+.+.+.|++.|+
T Consensus 78 ~~~~~~al~aGkhVl~EKPla~~-----~~ea~~l~~~a~~~~~ 116 (344)
T PRK10206 78 FEYAKRALEAGKNVLVEKPFTPT-----LAEAKELFALAKSKGL 116 (344)
T ss_pred HHHHHHHHHcCCcEEEecCCcCC-----HHHHHHHHHHHHHhCC
Confidence 46666777777777777777542 2223455555555553
No 198
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=24.85 E-value=66 Score=23.60 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHh---hhcCC-cEEeecCCCHHHHHHhhcc
Q 032162 80 PIVNTVAEKLGKSPAQVALRW---GLQMG-HSVLPKSANEARLKENFDI 124 (146)
Q Consensus 80 ~~l~~~a~~~~~s~~~lal~~---~l~~~-~~~i~g~~~~~~l~~n~~a 124 (146)
.++..+|.-|++++.+++..| +++++ ...-+...+.+.+++.+..
T Consensus 13 ~kl~slc~~~~ls~edL~~kWeaf~~~~~~~~~~l~~~~L~~F~~~lq~ 61 (253)
T PF08418_consen 13 EKLQSLCRLYNLSAEDLFYKWEAFSLNMQLDDTKLTLDNLDQFKQYLQD 61 (253)
T ss_dssp HHHHTHHHHST--HHHHHHHHTTHHHHTT-SC----TTTTTGGGTTTSG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcCcCCHHHHHHHHHHHHH
Confidence 467889999999999999998 55554 2223555666666555543
No 199
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=24.85 E-value=2.7e+02 Score=24.51 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=56.4
Q ss_pred CceEEecccCccCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCc-HHHHHHHHHhCC----------CHHHHHHHhh
Q 032162 33 PPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQN-PIVNTVAEKLGK----------SPAQVALRWG 101 (146)
Q Consensus 33 ~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~-~~l~~~a~~~~~----------s~~~lal~~~ 101 (146)
..+.+-..|..+..+.+..+.|.+.||.+|.-+|=-- +-+.+ -..+.+|.+.|+ +..+-|+.|+
T Consensus 106 ~vdavHPGYGFLSErsdFA~av~~AGi~fiGPspeVi-----~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~ 180 (1176)
T KOG0369|consen 106 NVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVI-----DSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFV 180 (1176)
T ss_pred CCCeecCCccccccchHHHHHHHhcCceEeCCCHHHH-----HHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHH
Confidence 4577888888888778899999999998887655311 01112 234556666664 4467889999
Q ss_pred hcCCcEEeec------------CCCHHHHHHhhc
Q 032162 102 LQMGHSVLPK------------SANEARLKENFD 123 (146)
Q Consensus 102 l~~~~~~i~g------------~~~~~~l~~n~~ 123 (146)
...|..+|.. ..+.+.++|+.+
T Consensus 181 k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~ 214 (1176)
T KOG0369|consen 181 KEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQ 214 (1176)
T ss_pred HhcCCcEEEeecccCCCcceEEeechhhHHHHHH
Confidence 9888666652 235666666653
No 200
>PF10335 DUF294_C: Putative nucleotidyltransferase substrate binding domain; InterPro: IPR018821 This entry is found associated with presumed nucleotidyltransferase domains and seems to be distantly related to other helical substrate binding domains.
Probab=24.85 E-value=1.5e+02 Score=19.81 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=32.8
Q ss_pred hCCCHHHHHHH-hhhcCCcEEeecCCCHHHHHHhhcccCccCCHHHHHhhHhhhhh
Q 032162 89 LGKSPAQVALR-WGLQMGHSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQS 143 (146)
Q Consensus 89 ~~~s~~~lal~-~~l~~~~~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~~ 143 (146)
.++.|.--+.| +++.++ +.-++|.++++...+.. .+++++.+.+.+.++-
T Consensus 41 ~gl~piv~~~R~lAL~~g---i~~~~T~eRl~~L~~~g--~l~~~~~~~l~~A~~~ 91 (145)
T PF10335_consen 41 GGLFPIVNAARLLALRHG---ISETSTLERLEALAEAG--VLSPDDAEDLIEAFEF 91 (145)
T ss_pred hhHHHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 34444433444 466766 55667888888877753 5888888887776654
No 201
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=24.79 E-value=2.6e+02 Score=22.48 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHhCC---CCceEEecccCccCCc-------HHHHHHHHHcCceEEEeccC-CCCCCC----CCCCCcHH
Q 032162 17 NFSLKKLGDLLEIAR---IPPAVNQVECHPAWQQ-------TKLQAFCKSKGVHLSGYSPL-GSAKNT----HRVLQNPI 81 (146)
Q Consensus 17 ~~~~~~l~~~~~~~~---~~~~~~q~~~~~~~~~-------~~~~~~~~~~gi~~~~~~~l-~~gg~~----~~~~~~~~ 81 (146)
|++.+.++++++..+ ++..+.-+.-|..--+ +++..+|+++||.++--+.= +-...+ ..-+++..
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~s 247 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWS 247 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCccccccc
Confidence 678888999887765 4444444444433221 58999999999988763221 111001 12344566
Q ss_pred HHHHHHH
Q 032162 82 VNTVAEK 88 (146)
Q Consensus 82 l~~~a~~ 88 (146)
+++|+++
T Consensus 248 I~~IarE 254 (471)
T COG3033 248 IEEIARE 254 (471)
T ss_pred HHHHHHH
Confidence 7777665
No 202
>COG5625 Predicted transcription regulator containing HTH domain [Transcription]
Probab=24.75 E-value=1.2e+02 Score=19.46 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=21.4
Q ss_pred HhHHHcCCccEEEeCCCCHHHHHHHHH
Q 032162 2 EALYDSGKARAIGVSNFSLKKLGDLLE 28 (146)
Q Consensus 2 ~~l~~~G~ir~iGvS~~~~~~l~~~~~ 28 (146)
.+++++|.+.||=-+.-++..++++-+
T Consensus 68 relvqkgWvGYiya~~~P~k~leei~~ 94 (113)
T COG5625 68 RELVQKGWVGYIYATTPPPKPLEEIEE 94 (113)
T ss_pred HHHHhccceeeEecCCCCchHHHHHHH
Confidence 478899999999877778887777654
No 203
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.57 E-value=79 Score=23.09 Aligned_cols=31 Identities=3% Similarity=-0.151 Sum_probs=23.6
Q ss_pred HHHHHhhhcCCcEEeecCCCHHHHHHhhccc
Q 032162 95 QVALRWGLQMGHSVLPKSANEARLKENFDIF 125 (146)
Q Consensus 95 ~lal~~~l~~~~~~i~g~~~~~~l~~n~~a~ 125 (146)
.-.++++.+++...+||+.|+.++.+.+++.
T Consensus 102 ~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~G 132 (222)
T PRK07114 102 PDIAKVCNRRKVPYSPGCGSLSEIGYAEELG 132 (222)
T ss_pred HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCC
Confidence 4467777777888888888888888877664
No 204
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.29 E-value=2e+02 Score=18.35 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=8.0
Q ss_pred HHHHHHHHHcCceEE
Q 032162 48 TKLQAFCKSKGVHLS 62 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~ 62 (146)
++++++|+++|+.++
T Consensus 92 ~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 92 EELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHcCCEEE
Confidence 455555555555555
No 205
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=23.95 E-value=1.6e+02 Score=22.11 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCC
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKN 72 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~ 72 (146)
-+++.||+.+++.+|+ ..+.|++
T Consensus 136 v~Li~~c~~~ki~vIs--s~Gag~k 158 (263)
T COG1179 136 VALIAYCRRNKIPVIS--SMGAGGK 158 (263)
T ss_pred HHHHHHHHHcCCCEEe--eccccCC
Confidence 3799999999999998 4444443
No 206
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=23.93 E-value=61 Score=26.38 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=11.6
Q ss_pred HHHHHHHHcCceEEEeccCCC
Q 032162 49 KLQAFCKSKGVHLSGYSPLGS 69 (146)
Q Consensus 49 ~~~~~~~~~gi~~~~~~~l~~ 69 (146)
.+.+.|+++||-+|+=-...+
T Consensus 240 ~vr~iC~ky~ILlI~DEV~tG 260 (449)
T COG0161 240 RVREICDKYGILLIADEVATG 260 (449)
T ss_pred HHHHHHHHcCcEEEeecceeC
Confidence 455556666665555555443
No 207
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=23.89 E-value=1.5e+02 Score=23.73 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=32.2
Q ss_pred ccCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCCHH
Q 032162 43 PAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSPA 94 (146)
Q Consensus 43 ~~~~~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~~ 94 (146)
.|.+-+|-++.|.+.||..|+ .|= | -.+++..-+-|.++|+++.
T Consensus 338 AFFPF~D~Id~Aa~~GV~aIi-QPG---G----SiRD~evI~aane~giaMv 381 (390)
T PRK07106 338 AFFPFGDNIERAAKSGVKYIA-QPG---G----SIRDDNVIETCNKYGMTMA 381 (390)
T ss_pred ccCCCCchHHHHHHcCCEEEE-CCC---C----CCCcHHHHHHHHHhCCEEE
Confidence 455567899999999999888 232 2 2457778888899987764
No 208
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=23.81 E-value=1.3e+02 Score=20.25 Aligned_cols=32 Identities=9% Similarity=0.163 Sum_probs=25.7
Q ss_pred eecCCCHHHHHHhhcccCccCCHHHHHhhHhhh
Q 032162 109 LPKSANEARLKENFDIFDWYIPEDLLAKFPEIE 141 (146)
Q Consensus 109 i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~ 141 (146)
.....+++.+++.+... -.+|+||.+++++-.
T Consensus 121 mirgkSpeeir~tfni~-ndfTpEEe~~irkEn 152 (158)
T COG5201 121 MIRGKSPEEIRETFNIE-NDFTPEEERRIRKEN 152 (158)
T ss_pred HHccCCHHHHHHHhCCC-CCCCHHHHHHHHHhc
Confidence 45778999999988874 489999999988754
No 209
>COG5484 Uncharacterized conserved protein [Function unknown]
Probab=23.80 E-value=66 Score=24.15 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHhhhcCC
Q 032162 80 PIVNTVAEKLGKSPAQVALRWGLQMG 105 (146)
Q Consensus 80 ~~l~~~a~~~~~s~~~lal~~~l~~~ 105 (146)
=.+.+||.++||+|.++ -.|--..+
T Consensus 20 mk~~dIAeklGvspnti-ksWKrr~g 44 (279)
T COG5484 20 MKLKDIAEKLGVSPNTI-KSWKRRDG 44 (279)
T ss_pred ccHHHHHHHhCCChHHH-HHHHHhcC
Confidence 35788999999999984 34544443
No 210
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=23.80 E-value=3e+02 Score=22.46 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=42.2
Q ss_pred hHHHcCCccEEEeCCCCHHHHHHHHHhCC----C-C-ceEEecccCccCCc--HHHHHHHHHcCceEEEec
Q 032162 3 ALYDSGKARAIGVSNFSLKKLGDLLEIAR----I-P-PAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYS 65 (146)
Q Consensus 3 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~~----~-~-~~~~q~~~~~~~~~--~~~~~~~~~~gi~~~~~~ 65 (146)
.+-+.|-...+|....+++++++.+...+ - + +-+|-+ .++-++. .+.++.|.++|+.++..+
T Consensus 38 AVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 38 AMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEec
Confidence 34577889999999999999887765543 1 3 444443 2222222 468999999999987654
No 211
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=23.63 E-value=2.9e+02 Score=21.57 Aligned_cols=56 Identities=9% Similarity=0.036 Sum_probs=32.3
Q ss_pred CccEEEeC----CCCHHHHHHHHHhCCCCceEEecccCccC-CcHHHHHHHHHcCceEEEe
Q 032162 9 KARAIGVS----NFSLKKLGDLLEIARIPPAVNQVECHPAW-QQTKLQAFCKSKGVHLSGY 64 (146)
Q Consensus 9 ~ir~iGvS----~~~~~~l~~~~~~~~~~~~~~q~~~~~~~-~~~~~~~~~~~~gi~~~~~ 64 (146)
++..+++. ..+++.+++.+...+.+..++-...+... +-.++.+.|+++|+-++.=
T Consensus 139 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD 199 (416)
T PRK00011 139 NVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVD 199 (416)
T ss_pred eEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEE
Confidence 45555553 35788888877543333333322222222 2268999999998877653
No 212
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=23.59 E-value=2.5e+02 Score=19.23 Aligned_cols=87 Identities=11% Similarity=0.050 Sum_probs=51.9
Q ss_pred CccEEEeCCCCHHHH------HHHHHhC-CCCceEEecccCccCC-------c--------HHHHHHHHHcCceEEEecc
Q 032162 9 KARAIGVSNFSLKKL------GDLLEIA-RIPPAVNQVECHPAWQ-------Q--------TKLQAFCKSKGVHLSGYSP 66 (146)
Q Consensus 9 ~ir~iGvS~~~~~~l------~~~~~~~-~~~~~~~q~~~~~~~~-------~--------~~~~~~~~~~gi~~~~~~~ 66 (146)
.|...|++..+...+ ..++... +.+..++++..|-... . ..+++.++++|..++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 566778988876643 2344332 2344555665554322 1 3688889999999998887
Q ss_pred CCCCCC-----CCCCCC--cHHHHHHHHHhCCCHHH
Q 032162 67 LGSAKN-----THRVLQ--NPIVNTVAEKLGKSPAQ 95 (146)
Q Consensus 67 l~~gg~-----~~~~~~--~~~l~~~a~~~~~s~~~ 95 (146)
...... ....+. .+.++++|+++|+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD 151 (198)
T cd01821 116 VTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLID 151 (198)
T ss_pred ccccccCCCCcccccchhHHHHHHHHHHHhCCCEEe
Confidence 642110 000111 26788899999887544
No 213
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.56 E-value=3.6e+02 Score=21.02 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=12.4
Q ss_pred HHHHHHHHc--CceEEEeccCCC
Q 032162 49 KLQAFCKSK--GVHLSGYSPLGS 69 (146)
Q Consensus 49 ~~~~~~~~~--gi~~~~~~~l~~ 69 (146)
.+.++++.. .|.++.|.|++.
T Consensus 271 ~La~llk~l~~~VnLiPyn~~~~ 293 (342)
T PRK14454 271 ELGKLLKGMLCHVNLIPVNEVKE 293 (342)
T ss_pred HHHHHHhcCCceEEEEecCCCCC
Confidence 455555543 566677777754
No 214
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=23.54 E-value=1.4e+02 Score=23.83 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=36.4
Q ss_pred hHHHcC-CccEEEeCCC---CHHHHHHHHHhCCCCceEEec---ccCccCCcHHHHHHHHHcCceEEEe
Q 032162 3 ALYDSG-KARAIGVSNF---SLKKLGDLLEIARIPPAVNQV---ECHPAWQQTKLQAFCKSKGVHLSGY 64 (146)
Q Consensus 3 ~l~~~G-~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~q~---~~~~~~~~~~~~~~~~~~gi~~~~~ 64 (146)
.|..+| .|.|+.|-.. +++++++++..-. ...++|. +.-.+.+=.++-..|+++|+-+..=
T Consensus 110 ~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T-~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvD 177 (386)
T COG1104 110 YLERQGFEVTYLPVDSNGLVDLEQLEEALRPDT-ILVSIMHANNETGTIQPIAEIGEICKERGILFHVD 177 (386)
T ss_pred HHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCc-eEEEEEecccCeeecccHHHHHHHHHHcCCeEEEe
Confidence 455567 7888888865 6777777765322 1222222 2222233368999999998666553
No 215
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=23.46 E-value=1.5e+02 Score=21.99 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=30.1
Q ss_pred CHHHHHHHHHhCCCCceEEecccC--ccCCc---HHHHHHHHHcCceEEE
Q 032162 19 SLKKLGDLLEIARIPPAVNQVECH--PAWQQ---TKLQAFCKSKGVHLSG 63 (146)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~q~~~~--~~~~~---~~~~~~~~~~gi~~~~ 63 (146)
++..++.+++.+..-++.+-..+. .+.+. ++.++.|+++||.+..
T Consensus 10 ~~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~ 59 (237)
T TIGR03849 10 PPKFVEDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYP 59 (237)
T ss_pred CHHHHHHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeC
Confidence 677777777777655566655553 33343 5788888888887766
No 216
>PRK13753 dihydropteroate synthase; Provisional
Probab=23.39 E-value=3.4e+02 Score=20.65 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=40.7
Q ss_pred HhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEeccC
Q 032162 2 EALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 2 ~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l 67 (146)
+.+++.+. -|.|-+|.++.++++++.. .. .+|-+ +-+. .+++.+.+.+.|++++.+-..
T Consensus 70 ~~l~~~~~--~ISIDT~~~~va~~al~aG-ad-iINDV--sg~~-d~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 70 DALSDQMH--RVSIDSFQPETQRYALKRG-VG-YLNDI--QGFP-DPALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred HHHHhCCC--cEEEECCCHHHHHHHHHcC-CC-EEEeC--CCCC-chHHHHHHHHcCCCEEEEecC
Confidence 34555542 4788899999999999763 32 22322 3332 678899999999999987654
No 217
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=23.35 E-value=1.1e+02 Score=17.94 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=15.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHh
Q 032162 80 PIVNTVAEKLGKSPAQVALRW 100 (146)
Q Consensus 80 ~~l~~~a~~~~~s~~~lal~~ 100 (146)
..|+++|...|+|..+++-..
T Consensus 24 ~~L~eiA~~~g~s~~~li~~i 44 (67)
T PF13467_consen 24 DALEEIAAREGLSLNALIAEI 44 (67)
T ss_dssp HHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 678999999999999877655
No 218
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=23.28 E-value=3.7e+02 Score=21.01 Aligned_cols=56 Identities=11% Similarity=0.006 Sum_probs=38.6
Q ss_pred EEEeCCC---CHHHHHHHHHhCCCCceEEecccCccCCc-HHHHHHHHHcCceEEEeccCCC
Q 032162 12 AIGVSNF---SLKKLGDLLEIARIPPAVNQVECHPAWQQ-TKLQAFCKSKGVHLSGYSPLGS 69 (146)
Q Consensus 12 ~iGvS~~---~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~~~~~~~l~~ 69 (146)
-||=|.. +++.++++.+.+.. +-+.+.--.++-+ ..+.+.|.++|=.+++|.++.-
T Consensus 203 iiGGSGnpeKDpeVlekaAEvaEG--eRclLaSanldlDy~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 203 IIGGSGNPEKDPEVLEKAAEVAEG--ERCLLASANLDLDYERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred EecCCCCCccCHHHHHHHHHhhcC--ceEEeeccccccCHHHHHHHHHhcCceEEEeeccCh
Confidence 4666654 68888888887764 2222222223334 5799999999999999999954
No 219
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=22.66 E-value=2.6e+02 Score=19.00 Aligned_cols=48 Identities=17% Similarity=-0.018 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCceEEecccCccCC---------------c--HHHHHHHHHcCceEEEeccC
Q 032162 20 LKKLGDLLEIARIPPAVNQVECHPAWQ---------------Q--TKLQAFCKSKGVHLSGYSPL 67 (146)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~q~~~~~~~~---------------~--~~~~~~~~~~gi~~~~~~~l 67 (146)
.+.+.++++..++.+...-...+.... . ...++.|+..|+..+...+-
T Consensus 29 ~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 29 AEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECT
T ss_pred HHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCc
Confidence 446667777777755554443332221 1 46899999999999887755
No 220
>PF10120 Aldolase_2: Putative aldolase; InterPro: IPR019293 This family of proteins have no known function. In many cases they represent a domain C-terminal to a phosphomethylpyrimidine kinase domain or a HTH DNA-binding domain.; PDB: 2PHP_A 2PB9_A.
Probab=22.63 E-value=1.3e+02 Score=20.90 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=31.6
Q ss_pred EEeCCCCHHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEeccCC
Q 032162 13 IGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLG 68 (146)
Q Consensus 13 iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l~ 68 (146)
+|.|.|....+..+.+....-=.+.-+.| ++++++.|++.|..+..+.+-.
T Consensus 62 fGaS~H~A~~lL~a~~~~p~iRsaiNiry-----~~~i~~~l~~~g~~v~~~dr~~ 112 (170)
T PF10120_consen 62 FGASSHVARILLTARKFDPEIRSAINIRY-----DEEIIEALEELGLKVSEFDRSE 112 (170)
T ss_dssp ETS-CHHHHHHHHHHCC-TT--EEEEEE-------HHHHHHHHCTTSEEEE--CCC
T ss_pred cCCcHHHHHHHHHHHHhCCCceEEEEEec-----CHHHHHHHHHCCCeEEEECCCC
Confidence 67888888777777655432113333344 3789999999999999987774
No 221
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=22.50 E-value=2.3e+02 Score=18.31 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=10.0
Q ss_pred HHHHHHHHHcCceEE
Q 032162 48 TKLQAFCKSKGVHLS 62 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~ 62 (146)
..+..+++++++.+.
T Consensus 74 ~~~~~~~~~~~~~~~ 88 (149)
T cd03018 74 FSLRAWAEENGLTFP 88 (149)
T ss_pred HHHHHHHHhcCCCce
Confidence 457777888776543
No 222
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.36 E-value=26 Score=24.86 Aligned_cols=18 Identities=39% Similarity=0.726 Sum_probs=14.8
Q ss_pred CHhHHHcCCcc--EEEeCCC
Q 032162 1 MEALYDSGKAR--AIGVSNF 18 (146)
Q Consensus 1 l~~l~~~G~ir--~iGvS~~ 18 (146)
++.|+++|+|+ -||-|||
T Consensus 36 lq~LvDDglV~~EKiGssn~ 55 (188)
T PF03962_consen 36 LQSLVDDGLVHVEKIGSSNY 55 (188)
T ss_pred HHHHhccccchhhhccCeeE
Confidence 46799999998 5899984
No 223
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=22.26 E-value=3.8e+02 Score=21.73 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=34.6
Q ss_pred EEEeCCC-C--HHHHHHHHHhCCCCceEEecccCccCCcHHHHHHHHHcCceEEEe
Q 032162 12 AIGVSNF-S--LKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGY 64 (146)
Q Consensus 12 ~iGvS~~-~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~ 64 (146)
.|++|.| . ...+-+.+...+- .+.-..-|++..++++.....+.||.+++|
T Consensus 50 ~i~~~~Hl~~~Ta~l~~~L~~~GA--~v~~~~~np~Stqd~vaaaL~~~gi~v~a~ 103 (425)
T PRK05476 50 RIAGCLHMTIQTAVLIETLKALGA--EVRWASCNPFSTQDDVAAALAAAGIPVFAW 103 (425)
T ss_pred EEEEEEeccccHHHHHHHHHHcCC--EEEEEeCCCcccCHHHHHHHHHCCceEEec
Confidence 4677765 3 2333333333333 555566678888899999999999999997
No 224
>PF10723 RepB-RCR_reg: Replication regulatory protein RepB; InterPro: IPR019661 This family of proteins regulates the replication of rolling circle replication (RCR) plasmids that have a double-strand replication origin (dso). Regulation of the replication of the RCR plasmids occurs mainly at the initiation of leading strand synthesis at the dso, such that concentration of Rep protein controls plasmid replication []. ; PDB: 2KEL_B.
Probab=22.24 E-value=1.2e+02 Score=18.45 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=15.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHhh
Q 032162 80 PIVNTVAEKLGKSPAQVALRWG 101 (146)
Q Consensus 80 ~~l~~~a~~~~~s~~~lal~~~ 101 (146)
+.|.++|...|+|.+++.=+++
T Consensus 54 ~~L~~lc~~~GlTQae~IE~LI 75 (84)
T PF10723_consen 54 ERLEELCKEQGLTQAEMIERLI 75 (84)
T ss_dssp HHHHHHHHHS---HHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHH
Confidence 6799999999999999765554
No 225
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.16 E-value=1.1e+02 Score=22.34 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=35.5
Q ss_pred HHcCCccEEEeCC-CCHHHHHHHHHhCCCCceEEecccCccCCc-HHHHHHHHHcC
Q 032162 5 YDSGKARAIGVSN-FSLKKLGDLLEIARIPPAVNQVECHPAWQQ-TKLQAFCKSKG 58 (146)
Q Consensus 5 ~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~g 58 (146)
+..-+|-|+|.|+ .+++++..+.. ...+.-++|++ +. +++++.|+++.
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~----~G~iYaVEfs~--R~~reLl~~a~~R~ 124 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVG----EGRIYAVEFSP--RPMRELLDVAEKRP 124 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccC----CCcEEEEEecc--hhHHHHHHHHHhCC
Confidence 3456788999997 78899877765 23677777774 22 79999999863
No 226
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.15 E-value=3.1e+02 Score=21.13 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=30.8
Q ss_pred EEEeCCCCHHHHHHHHHhCCCCceEEecccCccC---CcHHHHHHHHHcCceEEEec
Q 032162 12 AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSGYS 65 (146)
Q Consensus 12 ~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~~~~~~ 65 (146)
..|=|-++.+.+..+++...+ +++|+..+.+- ....+..+|+.+|+.++..+
T Consensus 232 a~dEs~~~~~~~~~~~~~~~~--d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~ 286 (354)
T cd03317 232 CLDESIQSAEDARKAIELGAC--KIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGG 286 (354)
T ss_pred EeCCccCCHHHHHHHHHcCCC--CEEEecccccCCHHHHHHHHHHHHHcCCcEEecC
Confidence 344555677777777655333 56666554332 12467778888888776543
No 227
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=22.05 E-value=2.9e+02 Score=21.35 Aligned_cols=51 Identities=8% Similarity=-0.005 Sum_probs=32.2
Q ss_pred eEEecccCccC---C-cHHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHH
Q 032162 35 AVNQVECHPAW---Q-QTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTV 85 (146)
Q Consensus 35 ~~~q~~~~~~~---~-~~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~ 85 (146)
+++|++.+.-. - .+..++.+++.|..|+.|.|..+|+...-+-.++.++.+
T Consensus 237 ~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~~~~~~~l 291 (309)
T cd08613 237 TTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGEFSEGFDTPEDLKRL 291 (309)
T ss_pred CeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCcccCCCCCHHHHHHH
Confidence 44677665322 2 267999999999999999998665322222333445444
No 228
>PRK13908 putative recombination protein RecO; Provisional
Probab=22.04 E-value=1.5e+02 Score=21.32 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=35.6
Q ss_pred HHHHHHhhhcCCcEEeecCCCHHHHHHhhcccCc-cCCHHHHHhhHhhhh
Q 032162 94 AQVALRWGLQMGHSVLPKSANEARLKENFDIFDW-YIPEDLLAKFPEIEQ 142 (146)
Q Consensus 94 ~~lal~~~l~~~~~~i~g~~~~~~l~~n~~a~~~-~L~~~~~~~l~~~~~ 142 (146)
..++-+|+-+++.+.--.+-..+++.+-.+.-.. .|+++|++.|.++..
T Consensus 152 iaL~RaflpaH~~C~~~~~f~~~ki~~~f~~k~t~~l~D~Evd~Lw~il~ 201 (204)
T PRK13908 152 IALARAFLPAHPSCIKSKSFELEKIKEFFRTKSTIFLEDEEVEELWRILL 201 (204)
T ss_pred hHHHHhhcccChhhhcccccCHHHHHHHHHhCCceecChHHHHHHHHHHH
Confidence 3455668888876655555677788887777654 799999999887753
No 229
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=22.03 E-value=75 Score=22.73 Aligned_cols=31 Identities=6% Similarity=0.205 Sum_probs=21.4
Q ss_pred HHHHHhhhcCCcEEeecCCCHHHHHHhhccc
Q 032162 95 QVALRWGLQMGHSVLPKSANEARLKENFDIF 125 (146)
Q Consensus 95 ~lal~~~l~~~~~~i~g~~~~~~l~~n~~a~ 125 (146)
.-.++++.+++...+||+.|+.++....+.-
T Consensus 91 ~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G 121 (196)
T PF01081_consen 91 PEVIEYAREYGIPYIPGVMTPTEIMQALEAG 121 (196)
T ss_dssp HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcccCCcCCHHHHHHHHHCC
Confidence 3456677777777777777777777766543
No 230
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.99 E-value=3.9e+02 Score=20.92 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=15.5
Q ss_pred HHHHHHHHHc--CceEEEeccCCC
Q 032162 48 TKLQAFCKSK--GVHLSGYSPLGS 69 (146)
Q Consensus 48 ~~~~~~~~~~--gi~~~~~~~l~~ 69 (146)
..+.++++.. .|.++.|.|+.+
T Consensus 276 ~~l~~~l~~~~~~VnLIpyn~~~g 299 (354)
T PRK14460 276 RELVRLLSRTKCKLNLIVYNPAEG 299 (354)
T ss_pred HHHHHHHhcCCCcEEEEcCCCCCC
Confidence 3577777765 568888888743
No 231
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=21.91 E-value=2.7e+02 Score=22.01 Aligned_cols=72 Identities=10% Similarity=0.068 Sum_probs=36.7
Q ss_pred cHHHHHHHHHcC-ceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHhhhc--CC----cEEeec--CCCHHH
Q 032162 47 QTKLQAFCKSKG-VHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSPAQVALRWGLQ--MG----HSVLPK--SANEAR 117 (146)
Q Consensus 47 ~~~~~~~~~~~g-i~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~~~lal~~~l~--~~----~~~i~g--~~~~~~ 117 (146)
++++++..++.| +-....-++-.| .++.|+.+-+.+......-+++.+.+ .+ ...|+| ..+.+.
T Consensus 234 ~~ell~~m~~~~~~~~~l~lglESg-------s~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed 306 (414)
T TIGR01579 234 DEELLEAIASEKRLCPHLHLSLQSG-------SDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEED 306 (414)
T ss_pred CHHHHHHHHhcCccCCCeEECCCcC-------ChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHH
Confidence 468888888765 222223344333 24455555333333333344555555 33 224555 367777
Q ss_pred HHHhhccc
Q 032162 118 LKENFDIF 125 (146)
Q Consensus 118 l~~n~~a~ 125 (146)
+++.++.+
T Consensus 307 ~~~tl~~i 314 (414)
T TIGR01579 307 FQETLRMV 314 (414)
T ss_pred HHHHHHHH
Confidence 77776554
No 232
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.76 E-value=3.9e+02 Score=20.90 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=8.4
Q ss_pred HHHHHHHH--cCceEEEecc
Q 032162 49 KLQAFCKS--KGVHLSGYSP 66 (146)
Q Consensus 49 ~~~~~~~~--~gi~~~~~~~ 66 (146)
.+.++++. -.+.++.|.|
T Consensus 275 ~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 275 KLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred HHHHHHhhCCCcEEEEccCC
Confidence 34444444 2345555555
No 233
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=21.74 E-value=4e+02 Score=20.83 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=33.9
Q ss_pred EEeCCCCHHHHHHHHHhCCCCceEEecccCccCC--c-HHHHHHHHHcCceEEEeccCC
Q 032162 13 IGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQ--Q-TKLQAFCKSKGVHLSGYSPLG 68 (146)
Q Consensus 13 iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~--~-~~~~~~~~~~gi~~~~~~~l~ 68 (146)
.-+...+++.+++.++ .+.+..++..+.|+.-. + .++.+.|+++|+-++.=...+
T Consensus 114 ~~vd~~d~~~le~~i~-~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~ 171 (378)
T TIGR01329 114 VHVDTTDLDKVKAALG-PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMM 171 (378)
T ss_pred EEeCCCCHHHHHHhcC-cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCc
Confidence 3333346777776664 23344555555555432 2 678999999999888765543
No 234
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=21.63 E-value=1.7e+02 Score=22.17 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=30.1
Q ss_pred HhHHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccC
Q 032162 2 EALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECH 42 (146)
Q Consensus 2 ~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~ 42 (146)
+.+.+.|+.--||.+.|+.++++.+.+.++.-|.+.-.+|+
T Consensus 87 ~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfS 127 (266)
T COG0289 87 EFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFS 127 (266)
T ss_pred HHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEeccch
Confidence 34567788888999999999988888777644455555554
No 235
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=21.63 E-value=1.3e+02 Score=19.36 Aligned_cols=30 Identities=3% Similarity=-0.128 Sum_probs=15.5
Q ss_pred HHHHHHhhcccCccCCHHHHHhhHhhhhhh
Q 032162 115 EARLKENFDIFDWYIPEDLLAKFPEIEQSL 144 (146)
Q Consensus 115 ~~~l~~n~~a~~~~L~~~~~~~l~~~~~~~ 144 (146)
.+-.+.-.+...+.||++.|+.|+-+.+.+
T Consensus 25 eevA~~lA~~egI~Ltd~HW~vI~flR~~y 54 (109)
T PF04358_consen 25 EEVAEALAKEEGIELTDEHWEVIRFLRDYY 54 (109)
T ss_dssp HHHHHHHHHCTT-S--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 333333444445678888888777665543
No 236
>PRK11579 putative oxidoreductase; Provisional
Probab=21.37 E-value=3.2e+02 Score=20.93 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCC
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGK 91 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~ 91 (146)
.++.-.|-++|..|++=.|++.- .-.-+.+.+.|++.|+
T Consensus 78 ~~~~~~al~aGkhVl~EKPla~t-----~~ea~~l~~~a~~~g~ 116 (346)
T PRK11579 78 FPLAKAALEAGKHVVVDKPFTVT-----LSQARELDALAKSAGR 116 (346)
T ss_pred HHHHHHHHHCCCeEEEeCCCCCC-----HHHHHHHHHHHHHhCC
Confidence 46666666777777777777542 1122445555555543
No 237
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=21.27 E-value=3.9e+02 Score=20.61 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCceEEEeccCCCC
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSA 70 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~g 70 (146)
.+.+..+.+.|+.+...+++..|
T Consensus 240 ~~ai~~L~~aGi~v~~qtvLl~g 262 (331)
T TIGR00238 240 AEAMKKLRTVNVTLLNQSVLLRG 262 (331)
T ss_pred HHHHHHHHHcCCEEEeecceECC
Confidence 36778888999999999999886
No 238
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=21.26 E-value=3.6e+02 Score=20.21 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=60.7
Q ss_pred HHHcCC-ccEEEeCCCCHHHHHHHHHhCCCC--------------ceEEecccCccCCcHHHHHHHHHcCceEEEeccCC
Q 032162 4 LYDSGK-ARAIGVSNFSLKKLGDLLEIARIP--------------PAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLG 68 (146)
Q Consensus 4 l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~--------------~~~~q~~~~~~~~~~~~~~~~~~~gi~~~~~~~l~ 68 (146)
+.+.+. +..+|++.-+++..+.+.+..+++ ++++-+- ++-....++...|-++|..|++=.|++
T Consensus 23 ~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Ia-tp~~~H~e~~~~AL~aGkhVl~EKPla 101 (342)
T COG0673 23 LAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIA-TPNALHAELALAALEAGKHVLCEKPLA 101 (342)
T ss_pred HHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEc-CCChhhHHHHHHHHhcCCEEEEcCCCC
Confidence 344444 688999888888888887776643 0111000 011112588899999999999999997
Q ss_pred CCCCCCCCCCcHHHHHHHHHhCC----------CHHHHHHHhhhcCC
Q 032162 69 SAKNTHRVLQNPIVNTVAEKLGK----------SPAQVALRWGLQMG 105 (146)
Q Consensus 69 ~gg~~~~~~~~~~l~~~a~~~~~----------s~~~lal~~~l~~~ 105 (146)
.. +-+-+.+.++|++.|+ .|.-..++=++..+
T Consensus 102 ~t-----~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~g 143 (342)
T COG0673 102 LT-----LEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELIDSG 143 (342)
T ss_pred CC-----HHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhcC
Confidence 52 3334667788888764 44445555555554
No 239
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=21.20 E-value=1e+02 Score=14.54 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=14.6
Q ss_pred cHHHHHHHHHhCCCHHHHH
Q 032162 79 NPIVNTVAEKLGKSPAQVA 97 (146)
Q Consensus 79 ~~~l~~~a~~~~~s~~~la 97 (146)
.+.+..++.++++++.++.
T Consensus 8 gdt~~~ia~~~~~~~~~~~ 26 (46)
T cd00118 8 GDTLSSIAQRYGISVEELL 26 (46)
T ss_pred CCCHHHHHHHHCcCHHHHH
Confidence 3567888999999888754
No 240
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=21.12 E-value=3e+02 Score=19.21 Aligned_cols=78 Identities=15% Similarity=0.262 Sum_probs=44.8
Q ss_pred HhHHHcCCccEEEeCCCCH--HHHHHHHHhCCCCceEEecccCccCC---c-------HHHHHHHHHcCceEEEeccCCC
Q 032162 2 EALYDSGKARAIGVSNFSL--KKLGDLLEIARIPPAVNQVECHPAWQ---Q-------TKLQAFCKSKGVHLSGYSPLGS 69 (146)
Q Consensus 2 ~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~~---~-------~~~~~~~~~~gi~~~~~~~l~~ 69 (146)
+.|++.|- .+.+.+|+. ..+..+.. .+|+.+-+..+.... + ..++..|+..|+.+++-
T Consensus 140 ~~l~~~G~--~ialddfg~~~~~~~~l~~---l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~----- 209 (241)
T smart00052 140 QRLRELGV--RIALDDFGTGYSSLSYLKR---LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE----- 209 (241)
T ss_pred HHHHHCCC--EEEEeCCCCcHHHHHHHHh---CCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe-----
Confidence 45666665 466666643 33333332 245666555433321 1 46789999999999983
Q ss_pred CCCCCCCCCcHHHHHHHHHhCCCHHH
Q 032162 70 AKNTHRVLQNPIVNTVAEKLGKSPAQ 95 (146)
Q Consensus 70 gg~~~~~~~~~~l~~~a~~~~~s~~~ 95 (146)
| ..++.-.+.+.+.|+...|
T Consensus 210 g------Ve~~~~~~~l~~~Gi~~~Q 229 (241)
T smart00052 210 G------VETPEQLDLLRSLGCDYGQ 229 (241)
T ss_pred c------CCCHHHHHHHHHcCCCEEe
Confidence 2 3345555666667776555
No 241
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.12 E-value=1.3e+02 Score=15.04 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=10.7
Q ss_pred CCCCHHHHHHHHHhCCC
Q 032162 16 SNFSLKKLGDLLEIARI 32 (146)
Q Consensus 16 S~~~~~~l~~~~~~~~~ 32 (146)
++|+.++|...++..++
T Consensus 2 dtWs~~~L~~wL~~~gi 18 (38)
T PF10281_consen 2 DTWSDSDLKSWLKSHGI 18 (38)
T ss_pred CCCCHHHHHHHHHHcCC
Confidence 45666677777666554
No 242
>PF12551 PHBC_N: Poly-beta-hydroxybutyrate polymerase N terminal; InterPro: IPR022211 This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF07167 from PFAM, PF00561 from PFAM. There is a single completely conserved residue W that may be functionally important. PHBC is the third enzyme of the poly-beta-hydroxybutyrate biosynthetic pathway.
Probab=20.93 E-value=84 Score=16.93 Aligned_cols=13 Identities=46% Similarity=0.498 Sum_probs=11.1
Q ss_pred hCCCHHHHHHHhh
Q 032162 89 LGKSPAQVALRWG 101 (146)
Q Consensus 89 ~~~s~~~lal~~~ 101 (146)
.|+||+.++++|.
T Consensus 22 ~GlSPaal~lA~~ 34 (46)
T PF12551_consen 22 GGLSPAALALAYL 34 (46)
T ss_pred cCcCHHHHHHHHH
Confidence 4999999999874
No 243
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.92 E-value=3.8e+02 Score=20.30 Aligned_cols=71 Identities=8% Similarity=0.103 Sum_probs=42.2
Q ss_pred CHHHHHHHHHhCCCCceEEecccCccCCc------HHHHHHHHHcCceEEEe-ccCCCCCCC-----CCCCCcHHHHHHH
Q 032162 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGY-SPLGSAKNT-----HRVLQNPIVNTVA 86 (146)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~~~~~-~~l~~gg~~-----~~~~~~~~l~~~a 86 (146)
+.+.+.++++. .+.++++.-|.+.-+ .++.++|+..|+.+-+= +-+++..-. ..+.+++...++.
T Consensus 81 ~~~~i~~ai~~---GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv 157 (276)
T cd00947 81 SFELIKRAIRA---GFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFV 157 (276)
T ss_pred CHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHH
Confidence 45666666554 357777777765533 58999999999988772 233221100 0123446677777
Q ss_pred HHhCCC
Q 032162 87 EKLGKS 92 (146)
Q Consensus 87 ~~~~~s 92 (146)
++-|+.
T Consensus 158 ~~TgvD 163 (276)
T cd00947 158 EETGVD 163 (276)
T ss_pred HHHCCC
Confidence 776654
No 244
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=20.84 E-value=3.1e+02 Score=19.32 Aligned_cols=64 Identities=19% Similarity=0.104 Sum_probs=36.0
Q ss_pred HHHcCCc-cEEEeCCCCHHHHHHHHHhCC-CCceEEe------------------cccCccCCcHHHHHHHHHcCceEEE
Q 032162 4 LYDSGKA-RAIGVSNFSLKKLGDLLEIAR-IPPAVNQ------------------VECHPAWQQTKLQAFCKSKGVHLSG 63 (146)
Q Consensus 4 l~~~G~i-r~iGvS~~~~~~l~~~~~~~~-~~~~~~q------------------~~~~~~~~~~~~~~~~~~~gi~~~~ 63 (146)
+++-|.. ..+=+++|+++.+..+.+... ++...+. +..+.....+++++.++++|+.+.+
T Consensus 125 l~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~ 204 (229)
T cd08562 125 LRELWPHASKLLLSSFSLEALRAARRAAPELPLGLLFDTLPADWLELLAALGAVSIHLNYRGLTEEQVKALKDAGYKLLV 204 (229)
T ss_pred HHHhcCCcCCEEEECCCHHHHHHHHHhCCCCcEEEEecCCCcCHHHHHHHcCCeEEecChhhCCHHHHHHHHHCCCEEEE
Confidence 3444543 566788888888888876543 1111110 0000001125788888888888888
Q ss_pred eccC
Q 032162 64 YSPL 67 (146)
Q Consensus 64 ~~~l 67 (146)
|.+-
T Consensus 205 wTvn 208 (229)
T cd08562 205 YTVN 208 (229)
T ss_pred EeCC
Confidence 8443
No 245
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=20.79 E-value=4.5e+02 Score=21.11 Aligned_cols=67 Identities=7% Similarity=0.024 Sum_probs=43.1
Q ss_pred HHHcCCccEEEeCCCCHHHHHHHHHhCCCCceEEecccCccCCc---HHHHHHHHHcCceEEEeccCCCC
Q 032162 4 LYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSA 70 (146)
Q Consensus 4 l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~~~~~~~l~~g 70 (146)
+.++.-|....+-.-+.+.+.+.+...+.+...+..+-|+..+- +.+...|+++|+.++.=.+++.+
T Consensus 122 ~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 122 ILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred HHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 33344444444444445444444432235567778888887764 67999999999888887777654
No 246
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=20.74 E-value=74 Score=16.52 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=10.5
Q ss_pred ccCCHHHHHhhHhhhhhh
Q 032162 127 WYIPEDLLAKFPEIEQSL 144 (146)
Q Consensus 127 ~~L~~~~~~~l~~~~~~~ 144 (146)
..+|+|||..|+...+.+
T Consensus 8 v~fs~eEW~~L~~~Qk~l 25 (41)
T PF01352_consen 8 VYFSQEEWELLDPAQKNL 25 (41)
T ss_dssp T---HHHHHTS-HHHHHH
T ss_pred EEcChhhcccccceeccc
Confidence 468999999888776553
No 247
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.73 E-value=2.5e+02 Score=22.20 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=32.1
Q ss_pred EEeCCCCHHHHHHHHHhCCCCceEEecccCccC---CcHHHHHHHHHcCceEEEecc
Q 032162 13 IGVSNFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSGYSP 66 (146)
Q Consensus 13 iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~~~~~~~ 66 (146)
.|=|.++...+.++++..-. +++|+..+-.= ....+.++|+.+|+.++..+.
T Consensus 266 ~dEs~~t~~d~~~li~~~a~--div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 266 ADEWCNTLEDIRDFADAGAA--HMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGS 320 (369)
T ss_pred ecCCcCCHHHHHHHHHhCCC--CEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 34455667777777655433 66666655422 225678888888888887543
No 248
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=20.72 E-value=2.2e+02 Score=23.04 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCceEEEeccCCCCC
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAK 71 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg 71 (146)
..+.+.|+++|+.+|.--...+.|
T Consensus 246 ~~lr~lc~~~gillI~DEV~TG~G 269 (453)
T PRK06943 246 RGLRALCDRYGVHLIADEIAVGCG 269 (453)
T ss_pred HHHHHHHHHcCCEEEeechhhCCC
Confidence 579999999999999988775543
No 249
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=20.71 E-value=3.5e+02 Score=19.88 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHhCCCCceEEecccCccCCc--HHHHHHHHHcCceEEEeccCCCC-CC--CCCCCCc---HHHHHHHHHh
Q 032162 18 FSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSA-KN--THRVLQN---PIVNTVAEKL 89 (146)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~~~~~~~l~~g-g~--~~~~~~~---~~l~~~a~~~ 89 (146)
|....++.+.+..+. ..|.|++.. .+++..--+.|...+.-++-+.| +. ..+.++. +.+..++++|
T Consensus 99 yqk~rve~lc~~lGl------~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~gL~~~~lGr~i~~~~~e~l~~l~~~y 172 (223)
T COG2102 99 YQKERVERLCEELGL------KVYAPLWGRDPEELLEEMVEAGFEAIIVAVSAEGLDESWLGRRIDREFLEELKSLNRRY 172 (223)
T ss_pred HHHHHHHHHHHHhCC------EEeecccCCCHHHHHHHHHHcCCeEEEEEEeccCCChHHhCCccCHHHHHHHHHHHHhc
Confidence 445556666665553 235565544 46777777788777776666665 10 0122332 5677788888
Q ss_pred CCCHH
Q 032162 90 GKSPA 94 (146)
Q Consensus 90 ~~s~~ 94 (146)
|+.|+
T Consensus 173 gi~~~ 177 (223)
T COG2102 173 GIHPA 177 (223)
T ss_pred CCCcc
Confidence 88774
No 250
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=20.70 E-value=1.4e+02 Score=22.19 Aligned_cols=47 Identities=21% Similarity=0.154 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHhCCCCceEEecccC--ccCCc---HHHHHHHHHcCceEEEe
Q 032162 18 FSLKKLGDLLEIARIPPAVNQVECH--PAWQQ---TKLQAFCKSKGVHLSGY 64 (146)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~q~~~~--~~~~~---~~~~~~~~~~gi~~~~~ 64 (146)
.++..++.+++.+..-++.+-..|. .+.+. .+.++.|+++||.+..-
T Consensus 22 lg~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~G 73 (244)
T PF02679_consen 22 LGLRYLEDLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPG 73 (244)
T ss_dssp --HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-
T ss_pred CCHHHHHHHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCC
Confidence 6788899999888755677777664 44554 68999999999999883
No 251
>PLN03244 alpha-amylase; Provisional
Probab=20.61 E-value=81 Score=27.81 Aligned_cols=21 Identities=10% Similarity=-0.097 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCceEEEeccCC
Q 032162 48 TKLQAFCKSKGVHLSGYSPLG 68 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~ 68 (146)
..+++.|.++||+||-=.+..
T Consensus 444 K~LVD~aH~~GI~VILDvV~N 464 (872)
T PLN03244 444 KRLVDEAHGLGLLVFLDIVHS 464 (872)
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 579999999999999866553
No 252
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=20.54 E-value=1.2e+02 Score=17.93 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=22.2
Q ss_pred cCCCHHHHHHhhcccCccCCH-HHHHhhHhhh
Q 032162 111 KSANEARLKENFDIFDWYIPE-DLLAKFPEIE 141 (146)
Q Consensus 111 g~~~~~~l~~n~~a~~~~L~~-~~~~~l~~~~ 141 (146)
.++|.+-++.-++-....|+. .|+..+..+.
T Consensus 12 kcss~eTLEkv~e~~~y~L~~~~e~~~f~~Aa 43 (71)
T PRK10391 12 KISSLESLEKLFDHLNYTLTDDQEIINMYRAA 43 (71)
T ss_pred hcCcHHHHHHHHHHhhcccCCHHHHHHHHHHH
Confidence 457788888888877778886 7766665544
No 253
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=20.54 E-value=3.9e+02 Score=20.34 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=43.4
Q ss_pred CHHHHHHHHHhCCCCceEEecccCccCCc------HHHHHHHHHcCceEEEe-ccCCCC--CCC--C-CCCCcHHHHHHH
Q 032162 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGY-SPLGSA--KNT--H-RVLQNPIVNTVA 86 (146)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~~~~~-~~l~~g--g~~--~-~~~~~~~l~~~a 86 (146)
+.+.+.++++. .+.++++.-|.+.-+ .+++++|+..|+.+-+= +-+++. +.. . .+.+++...++.
T Consensus 89 ~~e~i~~ai~~---GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv 165 (286)
T PRK08610 89 SFEKCKEAIDA---GFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELV 165 (286)
T ss_pred CHHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHH
Confidence 45666665554 457787777765432 58999999999998872 333321 100 0 133456677777
Q ss_pred HHhCCC
Q 032162 87 EKLGKS 92 (146)
Q Consensus 87 ~~~~~s 92 (146)
++.|+.
T Consensus 166 ~~TgvD 171 (286)
T PRK08610 166 EKTGID 171 (286)
T ss_pred HHHCCC
Confidence 776765
No 254
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=20.46 E-value=98 Score=23.48 Aligned_cols=17 Identities=6% Similarity=0.321 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCceEEEe
Q 032162 48 TKLQAFCKSKGVHLSGY 64 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~ 64 (146)
.++++||+++||.+|.=
T Consensus 75 ~elv~yA~~rgI~viPE 91 (303)
T cd02742 75 KDIIEYAAARGIEVIPE 91 (303)
T ss_pred HHHHHHHHHcCCEEEEe
Confidence 58999999999999983
No 255
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=20.42 E-value=3.3e+02 Score=19.45 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=22.6
Q ss_pred HHHHHHHHcCc---eEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCCH
Q 032162 49 KLQAFCKSKGV---HLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSP 93 (146)
Q Consensus 49 ~~~~~~~~~gi---~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~ 93 (146)
-.+++|+-.|. ++++--.-..| .....+.+.++|++|++..
T Consensus 141 aavdLa~lAGl~p~avi~eil~~dG----~~~~~~~~~~fA~~~~l~~ 184 (194)
T PF00926_consen 141 AAVDLARLAGLSPVAVICEILDDDG----DMARRDELEEFAKKHGLPI 184 (194)
T ss_dssp HHHHHHHHTTS-SBEEEEEBBETTS----SBHCHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHhCCCCcEEEEEEeCCCC----CcCCHHHHHHHHHHcCCcE
Confidence 36666766664 33332111122 4555677888888887644
No 256
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.39 E-value=2.7e+02 Score=21.97 Aligned_cols=60 Identities=10% Similarity=0.083 Sum_probs=32.7
Q ss_pred HhHHHcCCccEEEeCCCCHHH---HHHHHHhCCCCceEEecccCccCCc-HHHHHHHHHcCceEEE
Q 032162 2 EALYDSGKARAIGVSNFSLKK---LGDLLEIARIPPAVNQVECHPAWQQ-TKLQAFCKSKGVHLSG 63 (146)
Q Consensus 2 ~~l~~~G~ir~iGvS~~~~~~---l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~~~~ 63 (146)
++|.+.-.|-.+=||.-++.+ +..+++..+ ...+.=+.-.--.+ .++++.|+++|+.++-
T Consensus 65 EeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K--~VL~EKPla~n~~e~~~iveaA~~rgv~~me 128 (351)
T KOG2741|consen 65 EELAKDPEVDVVYISTPNPQHYEVVMLALNKGK--HVLCEKPLAMNVAEAEEIVEAAEARGVFFME 128 (351)
T ss_pred HHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCC--cEEecccccCCHHHHHHHHHHHHHcCcEEEe
Confidence 566667766655566544433 344444443 22222222211112 5899999999977765
No 257
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=20.37 E-value=87 Score=17.83 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=15.6
Q ss_pred cccCccCCHHHHHhhHhhhhh
Q 032162 123 DIFDWYIPEDLLAKFPEIEQS 143 (146)
Q Consensus 123 ~a~~~~L~~~~~~~l~~~~~~ 143 (146)
+|+..|++++|++.+.++.+.
T Consensus 13 rAfRRp~~~~e~~~~~~~~~~ 33 (64)
T PF07637_consen 13 RAFRRPLTDEEVDRYLALYDS 33 (64)
T ss_pred HHhCCCCCHHHHHHHHHHHHH
Confidence 455669999998888777654
No 258
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=20.36 E-value=1.5e+02 Score=16.64 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCHHHHHHHhh
Q 032162 81 IVNTVAEKLGKSPAQVALRWG 101 (146)
Q Consensus 81 ~l~~~a~~~~~s~~~lal~~~ 101 (146)
-+..+|+++|+|+.++.-.|-
T Consensus 7 ~Ie~~A~~~~~s~~ea~~~~~ 27 (62)
T PF12668_consen 7 CIEEFAKKLNISGEEAYNYFK 27 (62)
T ss_pred HHHHHHHHHCcCHHHHHHHHH
Confidence 467899999999998665554
No 259
>COG2307 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.34 E-value=58 Score=25.13 Aligned_cols=57 Identities=12% Similarity=0.025 Sum_probs=40.0
Q ss_pred HhCCCHHHHHHHhhhcCCcEEeecCCCHHHHHHhhcccCccCCHHHHHhhHhhhhhh
Q 032162 88 KLGKSPAQVALRWGLQMGHSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQSL 144 (146)
Q Consensus 88 ~~~~s~~~lal~~~l~~~~~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~~~ 144 (146)
.+|.-...=++.|++--...|-.=+++.+..++|..+..-.||.|.|+.|+..+..+
T Consensus 60 ~~g~~t~~~~~~~l~~D~~~P~Sl~ssl~~ar~nAr~VR~~ls~etWe~LN~~~~~~ 116 (313)
T COG2307 60 GYGVLTAADVLDFLTRDRDNPSSLVSSLEAARENARAVRDRLSSETWEALNELYLAL 116 (313)
T ss_pred cccccchhHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 345544444666766543322222367889999999998899999999999987654
No 260
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=20.18 E-value=2.6e+02 Score=18.03 Aligned_cols=55 Identities=15% Similarity=0.024 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCHHHHHHHhhhcCCcEEeecCCCHHHHHHhhcccCccCCHHHHHhhHhhhhhh
Q 032162 82 VNTVAEKLGKSPAQVALRWGLQMGHSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQSL 144 (146)
Q Consensus 82 l~~~a~~~~~s~~~lal~~~l~~~~~~i~g~~~~~~l~~n~~a~~~~L~~~~~~~l~~~~~~~ 144 (146)
+.+...+++.+..+.|.=- -...++++++..-+...+..+++++++.|-+....+
T Consensus 60 ~~~~L~~~~L~k~E~~~i~--------Nl~P~s~~E~~~lI~sl~~r~~ee~l~~iL~~i~~~ 114 (118)
T smart00657 60 VRTLLKSKKLHKFEIAQLG--------NLRPETAEEAQLLIPSLEERIDEEELEELLDDLSSL 114 (118)
T ss_pred HHHHHHhcCCCHHHHHHHh--------CCCCCCHHHHHHHhhhhhccCCHHHHHHHHHHHHHh
Confidence 4444455677777655421 235678889999998888789999998887766554
No 261
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=20.15 E-value=82 Score=18.67 Aligned_cols=22 Identities=5% Similarity=0.158 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCceEEEeccCCC
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGS 69 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~ 69 (146)
..++++++++|..+++.+|++.
T Consensus 45 ~~~l~~a~~~~~kv~p~C~y~~ 66 (78)
T PF14542_consen 45 EAALDYARENGLKVVPTCSYVA 66 (78)
T ss_dssp HHHHHHHHHTT-EEEETSHHHH
T ss_pred HHHHHHHHHCCCEEEEECHHHH
Confidence 4689999999999999888743
No 262
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=20.10 E-value=1.8e+02 Score=21.14 Aligned_cols=37 Identities=5% Similarity=0.103 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHH
Q 032162 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSPAQVA 97 (146)
Q Consensus 48 ~~~~~~~~~~gi~~~~~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~~~la 97 (146)
+...+.-+++||.+.+ +| +..+.+.|++.|+++.++.
T Consensus 16 p~~~~vf~~~~idfCc-----gG--------~~~l~ea~~~~~i~~~~~~ 52 (220)
T PRK10992 16 PRATALFREYDLDFCC-----GG--------KQTLARAAARKNLDIDVIE 52 (220)
T ss_pred ccHHHHHHHcCCcccC-----CC--------CchHHHHHHHcCCCHHHHH
Confidence 4556677788888888 44 4567778888888776543
Done!