Query 032163
Match_columns 146
No_of_seqs 162 out of 1037
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 10:26:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2881 Predicted membrane pro 100.0 1.9E-31 4.2E-36 223.0 9.0 136 11-146 125-294 (294)
2 COG2119 Predicted membrane pro 100.0 4.3E-28 9.3E-33 194.0 11.7 122 14-144 63-186 (190)
3 PF01169 UPF0016: Uncharacteri 99.9 1.9E-27 4E-32 166.6 6.6 76 61-136 1-78 (78)
4 COG2119 Predicted membrane pro 99.9 3E-21 6.5E-26 154.7 9.4 86 60-145 3-88 (190)
5 KOG2881 Predicted membrane pro 99.8 2.6E-19 5.6E-24 150.3 6.7 88 56-143 64-151 (294)
6 PRK11469 hypothetical protein; 97.7 0.00067 1.4E-08 54.3 10.8 128 5-144 57-186 (188)
7 PF01810 LysE: LysE type trans 97.1 0.02 4.3E-07 44.2 12.1 121 12-143 57-191 (191)
8 COG1971 Predicted membrane pro 96.9 0.03 6.4E-07 45.6 12.0 117 15-143 66-187 (190)
9 TIGR02840 spore_YtaF putative 96.7 0.016 3.5E-07 46.9 9.3 38 5-42 50-88 (206)
10 TIGR02840 spore_YtaF putative 94.7 0.069 1.5E-06 43.2 5.3 53 91-143 30-82 (206)
11 COG4280 Predicted membrane pro 94.1 0.11 2.4E-06 43.2 5.3 65 77-142 18-84 (236)
12 PRK09304 arginine exporter pro 91.8 4.4 9.6E-05 32.1 11.2 23 121-143 180-202 (207)
13 PRK11469 hypothetical protein; 90.8 0.47 1E-05 38.0 4.7 42 101-143 47-88 (188)
14 TIGR00949 2A76 The Resistance 89.9 7.3 0.00016 29.8 11.2 19 120-138 166-184 (185)
15 COG4280 Predicted membrane pro 88.5 1.5 3.3E-05 36.6 6.1 126 15-143 64-199 (236)
16 COG0730 Predicted permeases [G 88.4 5.4 0.00012 32.3 9.3 44 100-143 211-254 (258)
17 PF02659 DUF204: Domain of unk 88.0 1.3 2.8E-05 29.2 4.5 37 99-136 31-67 (67)
18 TIGR00779 cad cadmium resistan 87.9 2.9 6.3E-05 34.1 7.3 57 87-144 21-77 (193)
19 COG1280 RhtB Putative threonin 87.8 13 0.00027 29.8 12.7 23 121-143 185-207 (208)
20 PRK10958 leucine export protei 87.6 13 0.00028 29.7 12.4 21 122-142 190-210 (212)
21 PF03596 Cad: Cadmium resistan 87.1 4.8 0.0001 32.6 8.1 55 89-144 24-78 (191)
22 TIGR03716 R_switched_YkoY inte 85.7 7.7 0.00017 32.0 8.8 59 79-142 115-173 (215)
23 PRK10520 rhtB homoserine/homos 85.6 15 0.00033 28.7 11.2 22 121-142 182-203 (205)
24 PF03741 TerC: Integral membra 82.2 23 0.00051 28.1 12.1 60 77-141 123-182 (183)
25 PF03596 Cad: Cadmium resistan 80.9 2.9 6.2E-05 33.9 4.4 47 97-143 131-182 (191)
26 PF01925 TauE: Sulfite exporte 80.9 5.5 0.00012 31.3 6.0 45 94-138 195-239 (240)
27 PF01810 LysE: LysE type trans 79.7 6.1 0.00013 30.2 5.7 64 81-144 14-82 (191)
28 PRK10621 hypothetical protein; 77.4 6.6 0.00014 32.2 5.6 45 98-142 209-253 (266)
29 PRK10995 inner membrane protei 76.6 12 0.00027 30.3 6.9 34 110-143 176-212 (221)
30 PF01914 MarC: MarC family int 76.2 20 0.00044 28.8 8.0 71 73-143 122-198 (203)
31 COG1971 Predicted membrane pro 75.8 5.5 0.00012 32.5 4.6 41 102-143 48-88 (190)
32 COG0730 Predicted permeases [G 74.3 16 0.00035 29.5 7.1 55 89-143 67-121 (258)
33 PRK10621 hypothetical protein; 73.9 15 0.00033 30.1 6.9 51 92-142 74-124 (266)
34 PRK10323 cysteine/O-acetylseri 72.7 44 0.00095 26.2 12.6 22 120-141 174-195 (195)
35 PF13386 DsbD_2: Cytochrome C 70.9 39 0.00085 26.4 8.4 26 112-138 174-199 (199)
36 PF01925 TauE: Sulfite exporte 70.2 11 0.00024 29.6 5.1 47 97-143 65-111 (240)
37 TIGR00997 ispZ intracellular s 68.1 19 0.0004 28.9 6.0 49 94-144 22-70 (178)
38 PF03239 FTR1: Iron permease F 67.5 77 0.0017 26.9 10.8 81 58-141 133-215 (306)
39 TIGR03717 R_switched_YjbE inte 66.1 64 0.0014 25.5 10.0 53 87-142 123-175 (176)
40 PRK00293 dipZ thiol:disulfide 64.1 1.2E+02 0.0025 28.2 11.1 21 122-142 361-381 (571)
41 PRK00259 intracellular septati 63.8 27 0.00059 27.9 6.1 48 94-143 22-69 (179)
42 TIGR00949 2A76 The Resistance 63.4 23 0.0005 27.0 5.5 54 89-142 20-75 (185)
43 COG4300 CadD Predicted permeas 62.7 88 0.0019 25.9 9.5 76 68-144 11-89 (205)
44 PRK10995 inner membrane protei 60.9 43 0.00094 27.1 7.0 37 107-143 57-95 (221)
45 TIGR03717 R_switched_YjbE inte 60.5 42 0.0009 26.6 6.6 64 74-143 14-82 (176)
46 COG0861 TerC Membrane protein 60.0 1.1E+02 0.0023 25.9 9.7 79 60-143 132-212 (254)
47 COG1283 NptA Na+/phosphate sym 59.8 1.2E+02 0.0026 28.5 10.4 95 15-110 5-105 (533)
48 PRK10229 threonine efflux syst 59.5 65 0.0014 25.1 7.6 70 73-143 19-93 (206)
49 TIGR00427 membrane protein, Ma 58.9 62 0.0013 26.0 7.5 48 96-143 150-200 (201)
50 TIGR03718 R_switched_Alx integ 58.8 1.2E+02 0.0025 26.4 9.5 73 68-143 195-270 (302)
51 TIGR00948 2a75 L-lysine export 58.1 32 0.00069 26.3 5.5 63 81-143 12-77 (177)
52 PF02690 Na_Pi_cotrans: Na+/Pi 56.2 51 0.0011 25.0 6.3 85 26-111 2-91 (142)
53 PRK00293 dipZ thiol:disulfide 54.4 36 0.00077 31.5 6.1 47 94-140 216-262 (571)
54 PF13347 MFS_2: MFS/sugar tran 53.6 55 0.0012 27.8 6.7 41 100-140 268-308 (428)
55 COG2917 Intracellular septatio 52.0 45 0.00098 27.1 5.5 50 94-145 22-71 (180)
56 PF06166 DUF979: Protein of un 50.1 88 0.0019 27.5 7.4 98 6-117 45-143 (308)
57 PRK10019 nickel/cobalt efflux 50.0 1.1E+02 0.0023 26.3 7.9 70 67-143 199-273 (279)
58 PF02683 DsbD: Cytochrome C bi 49.8 1.3E+02 0.0027 23.7 12.2 21 121-141 191-211 (211)
59 PF11872 DUF3392: Protein of u 48.5 1.1E+02 0.0024 22.8 10.5 32 3-34 8-39 (106)
60 PRK10520 rhtB homoserine/homos 48.5 57 0.0012 25.4 5.6 72 71-143 18-94 (205)
61 TIGR00704 NaPi_cotrn_rel Na/Pi 47.9 1.2E+02 0.0026 26.1 7.9 84 24-108 12-100 (307)
62 PRK10229 threonine efflux syst 47.4 1.3E+02 0.0029 23.3 12.6 21 122-142 185-205 (206)
63 PRK10323 cysteine/O-acetylseri 46.6 69 0.0015 25.0 5.8 66 78-143 24-94 (195)
64 PF04279 IspA: Intracellular s 44.9 85 0.0018 24.8 6.1 48 95-144 23-70 (176)
65 PF03739 YjgP_YjgQ: Predicted 44.7 1.4E+02 0.003 24.8 7.6 61 79-141 287-353 (354)
66 COG1238 Predicted membrane pro 44.7 1.5E+02 0.0034 23.3 7.6 64 58-122 20-83 (161)
67 COG2215 ABC-type uncharacteriz 43.9 77 0.0017 27.7 6.1 68 76-143 76-152 (303)
68 COG1279 Lysine efflux permease 43.0 1.9E+02 0.0041 23.9 9.3 114 24-142 79-201 (202)
69 PRK10019 nickel/cobalt efflux 43.0 69 0.0015 27.5 5.6 22 121-142 87-108 (279)
70 PF01914 MarC: MarC family int 42.8 1.3E+02 0.0028 24.1 7.0 40 105-144 51-92 (203)
71 PF02683 DsbD: Cytochrome C bi 37.4 1.2E+02 0.0025 23.9 5.9 45 94-140 48-92 (211)
72 PRK15120 lipopolysaccharide AB 37.3 2.6E+02 0.0057 23.8 8.7 61 81-141 283-347 (366)
73 TIGR02230 ATPase_gene1 F0F1-AT 36.8 76 0.0016 23.3 4.3 25 99-123 50-74 (100)
74 PF04955 HupE_UreJ: HupE / Ure 36.7 90 0.0019 24.8 5.1 46 92-138 134-179 (180)
75 PF03741 TerC: Integral membra 35.7 1.2E+02 0.0027 24.0 5.8 53 88-143 29-81 (183)
76 PRK11111 hypothetical protein; 35.5 2.2E+02 0.0048 23.2 7.3 46 98-143 156-204 (214)
77 COG0795 Predicted permeases [G 32.7 3.1E+02 0.0066 23.2 8.7 66 79-144 292-362 (364)
78 PF02535 Zip: ZIP Zinc transpo 31.9 2.3E+02 0.0049 23.0 6.9 44 97-140 235-285 (317)
79 PF11139 DUF2910: Protein of u 31.7 1.7E+02 0.0036 23.2 5.9 54 90-143 31-90 (214)
80 PRK09304 arginine exporter pro 31.3 1.8E+02 0.004 22.8 6.1 61 83-143 28-91 (207)
81 PRK00944 hypothetical protein; 31.2 1.9E+02 0.0041 23.8 6.1 49 94-143 125-173 (195)
82 PF13150 DUF3989: Protein of u 31.1 89 0.0019 22.2 3.8 28 115-142 18-45 (85)
83 PF11139 DUF2910: Protein of u 30.9 2.7E+02 0.0058 22.0 11.0 132 11-143 65-212 (214)
84 PRK15071 lipopolysaccharide AB 30.1 1.9E+02 0.0042 24.3 6.4 27 116-142 328-354 (356)
85 PRK09669 putative symporter Ya 29.8 3.1E+02 0.0067 23.3 7.6 32 103-134 275-306 (444)
86 PRK11111 hypothetical protein; 29.8 2.7E+02 0.0059 22.7 6.9 36 107-142 59-96 (214)
87 TIGR03718 R_switched_Alx integ 29.3 2.7E+02 0.0059 24.2 7.2 79 62-143 62-148 (302)
88 PRK10739 putative antibiotic t 29.3 2.9E+02 0.0063 22.2 7.0 37 107-143 53-91 (197)
89 PF14007 YtpI: YtpI-like prote 29.1 1.4E+02 0.0031 21.4 4.6 23 120-142 54-76 (89)
90 COG1280 RhtB Putative threonin 29.1 1.6E+02 0.0035 23.3 5.5 69 75-143 23-94 (208)
91 COG2814 AraJ Arabinose efflux 29.0 4.3E+02 0.0093 23.7 10.8 37 98-134 249-285 (394)
92 TIGR00704 NaPi_cotrn_rel Na/Pi 28.9 2E+02 0.0044 24.8 6.4 115 20-135 133-255 (307)
93 TIGR03716 R_switched_YkoY inte 25.9 1.1E+02 0.0024 25.2 4.0 52 88-143 26-77 (215)
94 PRK11195 lysophospholipid tran 24.8 2.3E+02 0.0049 23.9 5.9 69 64-134 8-80 (393)
95 PF11295 DUF3096: Protein of u 24.4 1.9E+02 0.004 18.0 4.4 34 107-142 3-36 (39)
96 TIGR00427 membrane protein, Ma 24.1 3.8E+02 0.0082 21.5 7.0 37 107-143 56-94 (201)
97 PF04246 RseC_MucC: Positive r 24.0 2.5E+02 0.0055 20.5 5.4 20 122-141 96-115 (135)
98 PF10755 DUF2585: Protein of u 23.4 3.4E+02 0.0074 21.8 6.2 49 94-143 96-144 (165)
99 COG4300 CadD Predicted permeas 22.7 2.2E+02 0.0047 23.6 5.1 41 103-143 149-194 (205)
100 PRK10189 MATE family multidrug 22.6 5.4E+02 0.012 22.8 8.2 59 62-125 48-106 (478)
101 TIGR00145 FTR1 family protein. 21.9 2.3E+02 0.005 24.2 5.3 54 87-140 35-95 (283)
102 PF05360 YiaAB: yiaA/B two hel 21.6 2.3E+02 0.005 18.1 5.8 47 96-142 3-49 (53)
103 PF04474 DUF554: Protein of un 20.8 3.5E+02 0.0076 22.5 6.1 43 101-143 7-52 (226)
104 CHL00008 petG cytochrome b6/f 20.7 1.2E+02 0.0026 18.7 2.4 26 93-118 5-30 (37)
105 PRK00665 petG cytochrome b6-f 20.4 1.2E+02 0.0027 18.6 2.5 26 93-118 5-30 (37)
106 COG2095 MarC Multiple antibiot 20.2 3.9E+02 0.0084 21.7 6.2 69 74-142 122-194 (203)
No 1
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.97 E-value=1.9e-31 Score=223.04 Aligned_cols=136 Identities=49% Similarity=0.785 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHH-HHHHHhhHHhhhhccCcCchH---------------------------------Hhhcccchhhhh
Q 032163 11 DAIQQVSQHFIIL-TSWFHGLRISKCFFSFQADDE---------------------------------LKKQRRPFLLQF 56 (146)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~FG~~~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~~ 56 (146)
..|++-.+|.+.- +|.+||+|+|+++++..|++. .+++.|+.++.+
T Consensus 125 ~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~f 204 (294)
T KOG2881|consen 125 NLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLF 204 (294)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHh
Confidence 4577778887666 899999999999977654311 012245666788
Q ss_pred hhHHHHHHHHHHHhhcccchHHHHHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 032163 57 FSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG 136 (146)
Q Consensus 57 ~~~~f~~aF~liFlAElGDKTQlati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG 136 (146)
|+|.|+++|.++|++|||||||++|++||++.||+.|++|+.+||.+||++||+.|++++++|++|.+..++|++|++||
T Consensus 205 fspifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fg 284 (294)
T KOG2881|consen 205 FSPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFG 284 (294)
T ss_pred ccHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCC
Q 032163 137 IQSFLSPVKS 146 (146)
Q Consensus 137 ~~~L~~~~~~ 146 (146)
+..++++++.
T Consensus 285 l~~i~~~~~~ 294 (294)
T KOG2881|consen 285 LVYIFQGFDA 294 (294)
T ss_pred HHHHhcCCCC
Confidence 9999998763
No 2
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.95 E-value=4.3e-28 Score=194.01 Aligned_cols=122 Identities=25% Similarity=0.386 Sum_probs=100.4
Q ss_pred HHHHHHHHHH-HHHHHhhHHhhhhccCcCchHHhhcccchhhhhhhHHHHHHHHHHHhhcccchHHHHHHHHhcccC-Cc
Q 032163 14 QQVSQHFIIL-TSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN-PF 91 (146)
Q Consensus 14 ~~~~~~~~~~-~~~~FG~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~aF~liFlAElGDKTQlati~LAa~~~-p~ 91 (146)
++...+.... +|..||.|.++++-++++| .+..++ ..+|.++|+++|++|||||||++|++||++|+ ||
T Consensus 63 ~~~~~~~~~~~~Flafav~~l~edk~~~~e---~~~~~~------~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~ 133 (190)
T COG2119 63 PERPLAWASGVLFLAFAVWMLIEDKEDDEE---AQAASP------RGVFVTTFITFFLAELGDKTQIATIALAADYHSPW 133 (190)
T ss_pred chhHHHHHHHHHHHHHHHHHhccccccccc---cccccc------ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCce
Confidence 3333344333 7889999988855444333 221111 25899999999999999999999999999985 69
Q ss_pred EEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCCC
Q 032163 92 GVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 144 (146)
Q Consensus 92 ~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~~ 144 (146)
.|++|+++||++||.++|++|+++++|+|+|.++.++|++|++||+..+++..
T Consensus 134 ~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~~ 186 (190)
T COG2119 134 AVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQVF 186 (190)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888753
No 3
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.94 E-value=1.9e-27 Score=166.61 Aligned_cols=76 Identities=47% Similarity=0.727 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHhccc--CCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 032163 61 FLKAFSITFFGEWGDKSQLATIGLAADE--NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG 136 (146)
Q Consensus 61 f~~aF~liFlAElGDKTQlati~LAa~~--~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG 136 (146)
|+++|.++|++|||||||++|++||+|| +|+.|++|+.+|++++|+++|++|+++++++|++++++++|++|++||
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG 78 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999 899999999999999999999999999999999999999999999987
No 4
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.85 E-value=3e-21 Score=154.72 Aligned_cols=86 Identities=28% Similarity=0.375 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Q 032163 60 IFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS 139 (146)
Q Consensus 60 ~f~~aF~liFlAElGDKTQlati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~ 139 (146)
.+..+..++++||+|||||+.++.||+||+|++|+.|+..|++.+|.+++++|++.++.+|+++.++.++++|++||+|+
T Consensus 3 ~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~ 82 (190)
T COG2119 3 ALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWM 82 (190)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCC
Q 032163 140 FLSPVK 145 (146)
Q Consensus 140 L~~~~~ 145 (146)
++++.+
T Consensus 83 l~edk~ 88 (190)
T COG2119 83 LIEDKE 88 (190)
T ss_pred hccccc
Confidence 998643
No 5
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.78 E-value=2.6e-19 Score=150.34 Aligned_cols=88 Identities=25% Similarity=0.316 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHHHhhcccchHHHHHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 032163 56 FFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVF 135 (146)
Q Consensus 56 ~~~~~f~~aF~liFlAElGDKTQlati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~f 135 (146)
.+-+.|..++.++|++|+||||+++++.||+||+...|+.|+..|++++|.+++++|+.-++.+|.++.+++++++|++|
T Consensus 64 s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iF 143 (294)
T KOG2881|consen 64 SFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIF 143 (294)
T ss_pred HHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC
Q 032163 136 GIQSFLSP 143 (146)
Q Consensus 136 G~~~L~~~ 143 (146)
|+++|+++
T Consensus 144 GlkmL~eg 151 (294)
T KOG2881|consen 144 GLKMLKEG 151 (294)
T ss_pred HHHHHHHh
Confidence 99999986
No 6
>PRK11469 hypothetical protein; Provisional
Probab=97.68 E-value=0.00067 Score=54.34 Aligned_cols=128 Identities=22% Similarity=0.248 Sum_probs=75.9
Q ss_pred chhhhHHHHHHHHHHHHHH-HHHHHhhHHhhhhccCcCchHHhhcccchhhhhhhHHHHHHHHHHHhhcccchHHHHHHH
Q 032163 5 GGNYIRDAIQQVSQHFIIL-TSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIG 83 (146)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~FG~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~aF~liFlAElGDKTQlati~ 83 (146)
.|+++.+.+++.+ |.+.. .+.+-|.|.+++++..+++++++. .++. ...+.+..+..+-. | .--+-++
T Consensus 57 ~G~~l~~~i~~~~-~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~-~~~~---~~~~~l~LaiAtSi-----D-AlavGi~ 125 (188)
T PRK11469 57 MGMLASRFVLEWN-HWIAFVLLIFLGGRMIIEGFRGADDEDEEP-RRRH---GFWLLVTTAIATSL-----D-AMAVGVG 125 (188)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccccccc-ccCC---CHHHHHHHHHHHHH-----H-HHHHHHH
Confidence 5889999999976 77666 778889999999987654432211 1110 11122222211100 0 0001122
Q ss_pred Hhcc-cCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCCC
Q 032163 84 LAAD-ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 144 (146)
Q Consensus 84 LAa~-~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~~ 144 (146)
++.- .+++...+-.-.-..+++..++.+|+.+.+++ .++...++|++.++.|+..+.+..
T Consensus 126 ~~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~-g~~a~~lgG~iLI~iGi~il~~h~ 186 (188)
T PRK11469 126 LAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSII-GKKAEILGGLVLIGIGVQILWTHF 186 (188)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2221 24444444444555667777777888777654 567899999999999999997654
No 7
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=97.06 E-value=0.02 Score=44.16 Aligned_cols=121 Identities=18% Similarity=0.237 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccCcCchHHhhc---ccchhhhh-----hhH---HHHHHHHHHHhhcccchHHHH
Q 032163 12 AIQQVSQHFIILTSWFHGLRISKCFFSFQADDELKKQ---RRPFLLQF-----FSP---IFLKAFSITFFGEWGDKSQLA 80 (146)
Q Consensus 12 ~~~~~~~~~~~~~~~~FG~~~l~~~~~~~~~~~~~~~---~~~~~~~~-----~~~---~f~~aF~liFlAElGDKTQla 80 (146)
.+++.++=+-..-++++|.+.++...+.+.+++++.+ .++.+... .+| .++.++...|+.+-.+.+|..
T Consensus 57 ~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~~~~~~~~~ 136 (191)
T PF01810_consen 57 WLFMILKLLGALYLLYLGYKLLRSKFSSKSSTQSEAKKQSKSKSFLTGFLLNLLNPKAILFWLAVFPQFISPEYSSTQFL 136 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhccccHHHHHHHHHHHHHHhHHHHHHHHHhhhcccCccccHHHHH
Confidence 3444444444457889999999977666543322221 11111111 122 355555555555533344444
Q ss_pred HHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccH---HHHHHHHHHHHHHHHHHHhcCC
Q 032163 81 TIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISE---KIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 81 ti~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~---~~v~~~agilFl~fG~~~L~~~ 143 (146)
...+. +++|+..-+..... .++.+.+++.. +++++++|++++.+|++.++++
T Consensus 137 ~~~~~-------~~~~~~~w~~~~~~----~~~~~~~~~~~~~~~~i~~~~g~~li~~av~l~~~g 191 (191)
T PF01810_consen 137 VFILG-------IFLGSLLWFLLLAL----LGSRLRRKFSSRRIRWINRISGLLLIGFAVYLLYSG 191 (191)
T ss_pred HHHHH-------HHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 43332 23344444444444 44444444433 3899999999999999998864
No 8
>COG1971 Predicted membrane protein [Function unknown]
Probab=96.87 E-value=0.03 Score=45.58 Aligned_cols=117 Identities=20% Similarity=0.255 Sum_probs=63.1
Q ss_pred HHHHHHHHH-HHHHHhhHHhhhhccCcCchHHhhcccchhhhhhhHHHHHHHHHHHhhcccchHHHHHHHHhcccCCcEE
Q 032163 15 QVSQHFIIL-TSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGV 93 (146)
Q Consensus 15 ~~~~~~~~~-~~~~FG~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~aF~liFlAElGDKTQlati~LAa~~~p~~V 93 (146)
++..|.+.. ++.+-|++.++++.+.|++|..++..+..+ .+.+....+..+-.-+ --+-+.++-- . ..
T Consensus 66 ~~~~~wigf~lL~~lG~~mI~e~f~~~~~~~~~~~~~~~~--~~~~~~~laiatSida------l~vG~~~a~l-g--v~ 134 (190)
T COG1971 66 AEWAHWIGFVLLIILGLKMIIEGFKNEEDEFVDPAEKHDL--NFKELILLAIATSIDA------LAVGVGLAFL-G--VN 134 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhcchhcccccchh--hHHHHHHHHHHHHHHH------HHHhhhHHHh-c--ch
Confidence 444554444 888999999999999877765544322211 1222333333322211 0011111111 0 11
Q ss_pred eehHHHH----HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 94 VLGGIIG----QALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 94 ~~Ga~~a----l~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
...++.. ....+.++...|+.+.+.+ .++...++|++.+++|.+.+++.
T Consensus 135 i~~~av~iG~~T~il~~~G~~IG~~~g~~~-g~~ae~lgGiiLI~~G~~iL~~~ 187 (190)
T COG1971 135 ILLAAVAIGLITLILSALGAIIGRKLGKFL-GKYAEILGGIILIGIGVKILLEH 187 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHh
Confidence 1122222 2344455555565555544 56789999999999999999864
No 9
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=96.71 E-value=0.016 Score=46.88 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=29.5
Q ss_pred chhhhHHHHHHHHHHHHHH-HHHHHhhHHhhhhccCcCc
Q 032163 5 GGNYIRDAIQQVSQHFIIL-TSWFHGLRISKCFFSFQAD 42 (146)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~FG~~~l~~~~~~~~~ 42 (146)
.|+++.+.+++...|.+.. .+.+.|.+.+++.+.++++
T Consensus 50 ~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~~~~~ 88 (206)
T TIGR02840 50 LGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFRPKKE 88 (206)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4788888898865566555 8888999999999876544
No 10
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=94.72 E-value=0.069 Score=43.20 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=44.7
Q ss_pred cEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 91 FGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 91 ~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
+...+-...-..+++.++..+|+.+.+++|+++-+++++++++.+|+++++++
T Consensus 30 ~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~ 82 (206)
T TIGR02840 30 FLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNA 82 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556689999999999999999999999999999999999999864
No 11
>COG4280 Predicted membrane protein [Function unknown]
Probab=94.14 E-value=0.11 Score=43.22 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=54.8
Q ss_pred HHHHHHHHhcc--cCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcC
Q 032163 77 SQLATIGLAAD--ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 77 TQlati~LAa~--~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~ 142 (146)
+-..+++.+-. ++...-++|+.+|+++.-.++..+|+.+ ..+|.+++++++|++.+.||-.-.++
T Consensus 18 vEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~gvLLllFG~rw~Rs 84 (236)
T COG4280 18 VEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSGVLLLLFGYRWIRS 84 (236)
T ss_pred HHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHHHHHHHHHHHHHHH
Confidence 44556666664 4667789999999999999999999998 58999999999999999999765543
No 12
>PRK09304 arginine exporter protein; Provisional
Probab=91.80 E-value=4.4 Score=32.07 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 032163 121 EKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 121 ~~~v~~~agilFl~fG~~~L~~~ 143 (146)
.+++++++|++++.+|++.+.++
T Consensus 180 ~~~in~~~g~~l~~~~~~l~~~~ 202 (207)
T PRK09304 180 QRIINLFVGCVMWFIALQLARQG 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 36889999999999999998765
No 13
>PRK11469 hypothetical protein; Provisional
Probab=90.81 E-value=0.47 Score=37.97 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 101 QALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 101 l~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
..+++.++-.+|+.+.+++|+ +-|++++.+.+..|.|+++++
T Consensus 47 q~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~ 88 (188)
T PRK11469 47 ETLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEG 88 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 377888899999999999777 669999999999999999975
No 14
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=89.92 E-value=7.3 Score=29.78 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 032163 120 SEKIVALSGGVLFIVFGIQ 138 (146)
Q Consensus 120 p~~~v~~~agilFl~fG~~ 138 (146)
..+++++++|++++.+|++
T Consensus 166 ~~~~in~~~g~~l~~~~v~ 184 (185)
T TIGR00949 166 QQKWIDGITGALFVGFGIR 184 (185)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3467889999999999975
No 15
>COG4280 Predicted membrane protein [Function unknown]
Probab=88.51 E-value=1.5 Score=36.59 Aligned_cols=126 Identities=21% Similarity=0.173 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhccCcC-----chHHh--hc-ccchhhhhhh-HHHHHHHHHHHhhcccchHHHHHHHHh
Q 032163 15 QVSQHFIILTSWFHGLRISKCFFSFQA-----DDELK--KQ-RRPFLLQFFS-PIFLKAFSITFFGEWGDKSQLATIGLA 85 (146)
Q Consensus 15 ~~~~~~~~~~~~~FG~~~l~~~~~~~~-----~~~~~--~~-~~~~~~~~~~-~~f~~aF~liFlAElGDKTQlati~LA 85 (146)
+++|-++..++++||-|-.|.+..+-. .+|++ ++ ..+.-+..++ -.+.++|-.+.+ | |=.-.++.++|.
T Consensus 64 n~lqiv~gvLLllFG~rw~Rsavrr~ag~rkg~~ee~leE~~~ldq~e~g~~~la~l~~fk~v~L-e-glEv~~iVialg 141 (236)
T COG4280 64 NYLQIVSGVLLLLFGYRWIRSAVRRFAGIRKGGGEEKLEEGIVLDQEEEGFSKLALLVVFKVVAL-E-GLEVSLIVIALG 141 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCchhhHhhhhhcccccccchhhhHHHHhHHHHH-h-hheeeeeeeeec
Confidence 345666666899999998887654411 11111 00 0000001111 134444432222 1 223345556666
Q ss_pred ccc-CCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 86 ADE-NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 86 a~~-~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
+.+ .+..-..|+..|..+.-.++..+-+.++ ++|++.++..+|.+...||..=+-++
T Consensus 142 aa~sqwleAi~gagfA~vlvlvl~~~lh~pla-rvpe~~lKfvag~lL~sfGtfWlgeg 199 (236)
T COG4280 142 AASSQWLEAIMGAGFASVLVLVLTAILHSPLA-RVPEPHLKFVAGALLFSFGTFWLGEG 199 (236)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHh-hCCchhHHHHHHHHHHHhhHHHhccc
Confidence 654 4556677888888888888888777774 78999999999999999998766543
No 16
>COG0730 Predicted permeases [General function prediction only]
Probab=88.36 E-value=5.4 Score=32.29 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 100 GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 100 al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
.+.+.+.++...|..+.+++|++.++++-+.+.+..++.++++.
T Consensus 211 ~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~~~ 254 (258)
T COG0730 211 LLAVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLLRG 254 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999999887654
No 17
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=88.00 E-value=1.3 Score=29.22 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 032163 99 IGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG 136 (146)
Q Consensus 99 ~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG 136 (146)
.-..+++.++..+|+.+.+++ .++.+++++++++.+|
T Consensus 31 ~~~~~~~~~G~~~G~~~~~~~-~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 31 IFQFIMPLLGLLLGRRLGRFI-GSYAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence 445778888999999999855 4779999999998875
No 18
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=87.93 E-value=2.9 Score=34.10 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=47.3
Q ss_pred ccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCCC
Q 032163 87 DENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 144 (146)
Q Consensus 87 ~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~~ 144 (146)
+++++.+.+|-.+|...--..++.++.-+ ..+|++|+--.-|++=+.+|++.+++.+
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~gl-~~iP~~wIlGlLGliPI~lGi~~l~~~~ 77 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFGV-NLIPEKWVLGLLGLIPIYLGIKVAIKGE 77 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHHH-HhCCHHHHHhHHhHHHHHHHHHHHhccc
Confidence 56899999999999988877777755544 6899999977888888999999887754
No 19
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=87.78 E-value=13 Score=29.78 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 032163 121 EKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 121 ~~~v~~~agilFl~fG~~~L~~~ 143 (146)
.+++++..|++|+.+|+++++..
T Consensus 185 ~~~~~~~~G~~li~~g~~l~~~~ 207 (208)
T COG1280 185 SRIINRLFGVLLIGFGVKLALSR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 78999999999999999988754
No 20
>PRK10958 leucine export protein LeuE; Provisional
Probab=87.57 E-value=13 Score=29.65 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 032163 122 KIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 122 ~~v~~~agilFl~fG~~~L~~ 142 (146)
++++++.|++|+.+|++++.+
T Consensus 190 ~~i~~~~g~~l~~~~i~l~~~ 210 (212)
T PRK10958 190 AGGNSLVGLLFVGFAAKLATA 210 (212)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 678999999999999998754
No 21
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=87.06 E-value=4.8 Score=32.62 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=47.6
Q ss_pred CCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCCC
Q 032163 89 NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 144 (146)
Q Consensus 89 ~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~~ 144 (146)
+++.|.+|-.+|..+.-..+..++..+. .+|++|+--.-|++=+.+|++.++.++
T Consensus 24 ~~~~I~~GqylG~~~Lv~~Sl~~~~~l~-~ip~~wiLGlLGliPI~lGi~~l~~~~ 78 (191)
T PF03596_consen 24 RRRQIVIGQYLGFTILVLASLLGAFGLL-FIPPEWILGLLGLIPIYLGIKALFSGE 78 (191)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5889999999999988888888777764 999999988889999999999887654
No 22
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=85.65 E-value=7.7 Score=31.96 Aligned_cols=59 Identities=31% Similarity=0.314 Sum_probs=46.9
Q ss_pred HHHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcC
Q 032163 79 LATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 79 lati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~ 142 (146)
++++++ ..+|+.++.|...+...+-..+-.+.+++.++ .++++.++.+-...|+.++.+
T Consensus 115 ~A~~gi--t~~~~ii~~g~~~sIl~lr~~s~~l~~li~r~---p~L~~~~~~iL~~ig~kLil~ 173 (215)
T TIGR03716 115 LAAVAL--SGQFWVVFLGGIIGILIMRFAATIFVKLLERF---PELETAAFLLIGWIGVKLLLE 173 (215)
T ss_pred HHHHHh--ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 455555 37899999999999999998888888888653 567788888888888888775
No 23
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=85.64 E-value=15 Score=28.69 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 032163 121 EKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 121 ~~~v~~~agilFl~fG~~~L~~ 142 (146)
.+++++++|.+|+.+|++.+.+
T Consensus 182 ~~~i~~~~g~~li~~~~~l~~~ 203 (205)
T PRK10520 182 MKALNKIFGSLFMLVGALLASA 203 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999998765
No 24
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=82.21 E-value=23 Score=28.11 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=48.2
Q ss_pred HHHHHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhc
Q 032163 77 SQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 141 (146)
Q Consensus 77 TQlati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~ 141 (146)
|=+++++++ .+++.++.|.+.+...+-..+-.+.+.+.++ .++++.++.+-...|+.++.
T Consensus 123 SV~a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l~~~---p~l~~~~~~~L~~ig~~li~ 182 (183)
T PF03741_consen 123 SVLAAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLLERF---PYLKYLAAAILGFIGVKLIL 182 (183)
T ss_pred HHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 345566666 7899999999999999999999999998764 56788888877788877764
No 25
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=80.93 E-value=2.9 Score=33.91 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-----ccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 97 GIIGQALCTTAAVIGGKSLASQ-----ISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 97 a~~al~l~t~laV~~G~~l~~~-----ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
...-..++.++-+.+++.+++. +=+|+=+++.-++|+..|++.++++
T Consensus 131 ~l~vF~ilv~v~c~la~~l~~~p~i~~~leryg~~l~p~v~I~LGi~Il~es 182 (191)
T PF03596_consen 131 ILIVFLILVGVWCFLAYKLARIPIIAEFLERYGRWLVPIVYIGLGIYILIES 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhcccHHHHHHHHhCceeeEeC
Confidence 4445667778888888888753 2378889999999999999988875
No 26
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=80.89 E-value=5.5 Score=31.32 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=38.2
Q ss_pred eehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Q 032163 94 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQ 138 (146)
Q Consensus 94 ~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~ 138 (146)
.+...+.+...+.++..+|+.+.+++|+++.+++..++.+..|+.
T Consensus 195 ~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~ 239 (240)
T PF01925_consen 195 MLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGLK 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 344455578889999999999999999999999999998888865
No 27
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=79.69 E-value=6.1 Score=30.23 Aligned_cols=64 Identities=22% Similarity=0.301 Sum_probs=50.6
Q ss_pred HHHHhccc---CCcEEeehHHHHHHHHHHHHHHHHHHhhhhcc--HHHHHHHHHHHHHHHHHHHhcCCC
Q 032163 81 TIGLAADE---NPFGVVLGGIIGQALCTTAAVIGGKSLASQIS--EKIVALSGGVLFIVFGIQSFLSPV 144 (146)
Q Consensus 81 ti~LAa~~---~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip--~~~v~~~agilFl~fG~~~L~~~~ 144 (146)
.+.-+.++ +...+.+|...+-.+...+++..-..+.+..| ..++++++++..+.+|..++++.+
T Consensus 14 ~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~ 82 (191)
T PF01810_consen 14 VISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKF 82 (191)
T ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444443 45788999999999999999888888866554 568999999999999999998754
No 28
>PRK10621 hypothetical protein; Provisional
Probab=77.39 E-value=6.6 Score=32.24 Aligned_cols=45 Identities=9% Similarity=-0.040 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcC
Q 032163 98 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 98 ~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~ 142 (146)
.+.+...+.++...|..+.+++|++.++++...+-+..|+.++++
T Consensus 209 ~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~~~~~ 253 (266)
T PRK10621 209 GFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSAKLLYD 253 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHHHHHH
Confidence 445667788999999999999999999999999999999888754
No 29
>PRK10995 inner membrane protein; Provisional
Probab=76.60 E-value=12 Score=30.31 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=25.1
Q ss_pred HHHHHhhhhccH---HHHHHHHHHHHHHHHHHHhcCC
Q 032163 110 IGGKSLASQISE---KIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 110 ~~G~~l~~~ip~---~~v~~~agilFl~fG~~~L~~~ 143 (146)
..+..+.+++.+ +.++++.|++...+|+.++.++
T Consensus 176 ~~a~~l~~~LG~~gl~ii~Ri~GliL~aiavq~i~~G 212 (221)
T PRK10995 176 RSSGAIMRLLGKGGIEAISRLMGFLLVCMGVQFIING 212 (221)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666654 5788899999999999887654
No 30
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=76.22 E-value=20 Score=28.80 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=51.6
Q ss_pred ccchHHHHHHHHhcccCC---cEEeehHHHHHHHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHHHHHHhcCC
Q 032163 73 WGDKSQLATIGLAADENP---FGVVLGGIIGQALCTTAAVIGGKSLASQIS---EKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 73 lGDKTQlati~LAa~~~p---~~V~~Ga~~al~l~t~laV~~G~~l~~~ip---~~~v~~~agilFl~fG~~~L~~~ 143 (146)
-|.-|=-+++.++++++. ..+..++.....+.+.+.-..++++.+++. .+.+.++.|++-...|+-+..++
T Consensus 122 aGPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~~vi~Ri~Glil~aiavq~i~~G 198 (203)
T PF01914_consen 122 AGPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGLQVITRIMGLILAAIAVQMILSG 198 (203)
T ss_pred cChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666667777777654 456666677777778888888888888775 45678888888888888776553
No 31
>COG1971 Predicted membrane protein [Function unknown]
Probab=75.77 E-value=5.5 Score=32.52 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 102 ALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 102 ~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
+++..++-..|+.++++ +..+-||+++++....|+++++++
T Consensus 48 ~i~pliG~~~g~~~s~~-i~~~~~wigf~lL~~lG~~mI~e~ 88 (190)
T COG1971 48 AIMPLIGWFIGKFLSTF-IAEWAHWIGFVLLIILGLKMIIEG 88 (190)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555432 367889999999999999999885
No 32
>COG0730 Predicted permeases [General function prediction only]
Probab=74.29 E-value=16 Score=29.49 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=47.1
Q ss_pred CCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 89 NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 89 ~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
+...+-.-...-+.....++..+|..+..++|++..+..-+++.+..++++++..
T Consensus 67 k~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~ 121 (258)
T COG0730 67 KRGNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGP 121 (258)
T ss_pred HcCCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455677777778888899999999999999999999999999999999988764
No 33
>PRK10621 hypothetical protein; Provisional
Probab=73.88 E-value=15 Score=30.06 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=42.7
Q ss_pred EEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcC
Q 032163 92 GVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 92 ~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~ 142 (146)
.+=.-...-+.+.+.+++..|.++.+++|+++++.+-+++-+..++++++.
T Consensus 74 ~v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 74 VVNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM 124 (266)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 344556667788899999999999999999999999998888888887743
No 34
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=72.68 E-value=44 Score=26.16 Aligned_cols=22 Identities=9% Similarity=0.256 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhc
Q 032163 120 SEKIVALSGGVLFIVFGIQSFL 141 (146)
Q Consensus 120 p~~~v~~~agilFl~fG~~~L~ 141 (146)
..++++++.|.+|+.+|+++.|
T Consensus 174 ~~~~i~~~~g~~l~~~a~~l~~ 195 (195)
T PRK10323 174 YGRQLNIVLALLLVYCAVRIFY 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4578999999999999998764
No 35
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=70.92 E-value=39 Score=26.41 Aligned_cols=26 Identities=27% Similarity=0.616 Sum_probs=17.5
Q ss_pred HHHhhhhccHHHHHHHHHHHHHHHHHH
Q 032163 112 GKSLASQISEKIVALSGGVLFIVFGIQ 138 (146)
Q Consensus 112 G~~l~~~ip~~~v~~~agilFl~fG~~ 138 (146)
+..+.++...++.+ .++++++++|+|
T Consensus 174 ~~~l~~~~~~~~~r-~~g~~~i~~G~~ 199 (199)
T PF13386_consen 174 AGKLSRRLRRRLLR-LAGVLLIILGIY 199 (199)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHC
Confidence 34444555555554 889999999975
No 36
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=70.25 E-value=11 Score=29.62 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 97 GIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 97 a~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
...-+.....+++..|.++...+|+++++..-++.-+..+.+.++..
T Consensus 65 ~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~ 111 (240)
T PF01925_consen 65 IVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKK 111 (240)
T ss_pred hhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44556778888999999999999999999999999999999988753
No 37
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=68.08 E-value=19 Score=28.93 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=38.8
Q ss_pred eehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCCC
Q 032163 94 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 144 (146)
Q Consensus 94 ~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~~ 144 (146)
+.=++.++++++++++.......+++|. ++++++++=++||..+++-..
T Consensus 22 I~~AT~~~~vat~~~~~~~~~~~~~v~~--m~~is~~lv~vFGglTl~~~d 70 (178)
T TIGR00997 22 IFAATIALLVATIIAIGLSYVKYKKVEK--MQWISFVLIVVFGGLTLIFHD 70 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHHHHHHHhCC
Confidence 4446677888899999999998887765 488888888899988887544
No 38
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=67.51 E-value=77 Score=26.91 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHhhcccchHHHHHHHHhcccC--CcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 032163 58 SPIFLKAFSITFFGEWGDKSQLATIGLAADEN--PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVF 135 (146)
Q Consensus 58 ~~~f~~aF~liFlAElGDKTQlati~LAa~~~--p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~f 135 (146)
++.+..+|+ +.+=| |=-|=+.-.++.+..+ ...+..|+..|.++..+++.++-+.. .++|.+..-.+.+++-++.
T Consensus 133 ~~l~~~afl-~vlRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~~~~~~~-~~i~~~~~f~~~~~~ll~~ 209 (306)
T PF03239_consen 133 WALFLLAFL-IVLRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVLGWLLYRGL-IRISLRSFFIITGVLLLLI 209 (306)
T ss_pred hHHHHHHHH-HHHHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHH
Confidence 455666663 22233 6666666666666544 67888999999999888888886654 5689888777777765555
Q ss_pred HHHHhc
Q 032163 136 GIQSFL 141 (146)
Q Consensus 136 G~~~L~ 141 (146)
+..+++
T Consensus 210 aa~L~~ 215 (306)
T PF03239_consen 210 AAGLLG 215 (306)
T ss_pred HHHHHH
Confidence 544443
No 39
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=66.13 E-value=64 Score=25.49 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=41.2
Q ss_pred ccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcC
Q 032163 87 DENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 87 ~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~ 142 (146)
+.+.+.++.|..++..++-..+-.+.+++.++ .++++.++..-...|..++.+
T Consensus 123 ~~~~~li~~g~~i~i~~m~~~s~~~~~~~~~~---p~l~~~~~~~L~~ig~kl~~~ 175 (176)
T TIGR03717 123 HGHLGLLIFGLLLSIPIIVWGSTLILKLMDRF---PWIIYIGAALLGYVAGEMIVT 175 (176)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC
Confidence 35788888999988888888888888887653 567778877777888887753
No 40
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=64.10 E-value=1.2e+02 Score=28.20 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 032163 122 KIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 122 ~~v~~~agilFl~fG~~~L~~ 142 (146)
++++.+.|++.++.|+|++..
T Consensus 361 ~~~k~~~G~~ll~~~~~ll~~ 381 (571)
T PRK00293 361 NQVKTAFGFVLLALPVFLLER 381 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999998763
No 41
>PRK00259 intracellular septation protein A; Reviewed
Probab=63.78 E-value=27 Score=27.88 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=39.2
Q ss_pred eehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 94 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 94 ~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
+..++.+.++.+.+++.......+++|.. +++++++-++||..+++-.
T Consensus 22 i~~AT~~~i~a~~~~~~~~~~~~~~v~~m--~~i~~~lv~vfGglTl~l~ 69 (179)
T PRK00259 22 IYAATAALIVATVIQLAISWIRYRKVEKM--QLISLVVVVVFGGLTLVFH 69 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcchh--HHHHHHHHHHHHHHHHHhC
Confidence 55677888889999999999998877765 8888888889999888643
No 42
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=63.42 E-value=23 Score=26.98 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=43.5
Q ss_pred CCcEEeehHHHHHHHHHHHHHHHHHHhhhhccH--HHHHHHHHHHHHHHHHHHhcC
Q 032163 89 NPFGVVLGGIIGQALCTTAAVIGGKSLASQISE--KIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 89 ~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~--~~v~~~agilFl~fG~~~L~~ 142 (146)
+.+.+.+|..+|-.+...+++..-..+.+..|. ..+++++++..+.+|..++++
T Consensus 20 ~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 20 AGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457788999999999988888877777777774 677888887778899988874
No 43
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=62.69 E-value=88 Score=25.87 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=54.9
Q ss_pred HHhhcccchHHHHHHHHhcc---cCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCCC
Q 032163 68 TFFGEWGDKSQLATIGLAAD---ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 144 (146)
Q Consensus 68 iFlAElGDKTQlati~LAa~---~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~~ 144 (146)
.+.|-==|--=+..+..|.+ .+.+.+++|=.+|....-+.+.. +.+..+.+|++|+--.-|.+=+..|++.++.+.
T Consensus 11 ly~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~-~a~v~~fvp~e~I~glLGLIPi~LGik~l~~~d 89 (205)
T COG4300 11 LYIATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLL-FAFVLNFVPEEWILGLLGLIPIYLGIKVLILGD 89 (205)
T ss_pred HHHHhhHHHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHH-HHHHHhhCcHHHHHHHHhHHHHHHhhHHhhccc
Confidence 44444445444555555554 46789999999988776655544 444778999999999999999999999887653
No 44
>PRK10995 inner membrane protein; Provisional
Probab=60.87 E-value=43 Score=27.12 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhhc--cHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 107 AAVIGGKSLASQI--SEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 107 laV~~G~~l~~~i--p~~~v~~~agilFl~fG~~~L~~~ 143 (146)
+..+.|+.+.+.+ +....++.+|++.+.+|+.++++.
T Consensus 57 ~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~ 95 (221)
T PRK10995 57 VAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ 95 (221)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566677766654 788999999999999999999764
No 45
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=60.45 E-value=42 Score=26.56 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=45.7
Q ss_pred cchHHHHHHHHhccc-----CCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 74 GDKSQLATIGLAADE-----NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 74 GDKTQlati~LAa~~-----~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
+|+--..++ +++. +......|...|..+...........+ + ..+.++.+|++.+..|..++.+.
T Consensus 14 ~DN~~vi~~--~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll-~---~~~~~iaGGllLl~ia~~ml~~~ 82 (176)
T TIGR03717 14 GDNAVVIAL--AARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLL-A---IPFLKLIGGLLLLWIGWKLLLEE 82 (176)
T ss_pred HHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hHHHHHHHHHHHHHHHHHHHhcc
Confidence 565544444 4443 346778888888888877766655544 4 47889999999999999998764
No 46
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=60.03 E-value=1.1e+02 Score=25.92 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhcc--cchHHHHHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHH
Q 032163 60 IFLKAFSITFFGEW--GDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGI 137 (146)
Q Consensus 60 ~f~~aF~liFlAEl--GDKTQlati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~ 137 (146)
.|+.+...+-++.. .=-|=+++++++ .+|+.+..|.+.|...+-..+=.+.+.+.++ .++.+.+..+-+..|.
T Consensus 132 ~f~~ai~~I~i~D~vFSlDSV~Aa~g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~---p~l~~~~~~iL~~IG~ 206 (254)
T COG0861 132 PFWGAIIQIELADLVFSLDSVIAAVGMA--GHPFVMVTAVIFAILVMRFAAFLLARLLERH---PTLKYLALVILLFIGV 206 (254)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHc---hHHHHHHHHHHHHHHH
Confidence 45666555544422 223556666666 7899999999999999999999988888654 4667777777778888
Q ss_pred HHhcCC
Q 032163 138 QSFLSP 143 (146)
Q Consensus 138 ~~L~~~ 143 (146)
.++.++
T Consensus 207 kli~~~ 212 (254)
T COG0861 207 KLILEG 212 (254)
T ss_pred HHHHhh
Confidence 887765
No 47
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=59.82 E-value=1.2e+02 Score=28.49 Aligned_cols=95 Identities=20% Similarity=0.209 Sum_probs=61.8
Q ss_pred HHHHHHHHH-HHHHHhhHHhhhhccCcCchHHhhcccchhhhhhhHHHHHHHHHHHhhcccchHHHHHHHHhccc-----
Q 032163 15 QVSQHFIIL-TSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADE----- 88 (146)
Q Consensus 15 ~~~~~~~~~-~~~~FG~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~aF~liFlAElGDKTQlati~LAa~~----- 88 (146)
..+-|+... .+++||.+.+++....--+|..++...+..+.-+ -.++..++++-+----+-|-+.|+.+.++.
T Consensus 5 ~~~l~l~g~v~l~L~g~~~m~~Gv~~~~G~~lr~~L~~~t~np~-~gvl~Gi~~T~llQSStatt~lt~gfV~aGl~sl~ 83 (533)
T COG1283 5 LVLLNLLGAVALLLFGIKMVGDGVQRAAGDRLRKILARFTSNPI-LGVLAGIVATALLQSSTATTVLTIGFVAAGLLSLK 83 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHhcchHHHHHHHHHhccccchh
Confidence 344455444 8899999999988877555544433222111111 245666666666667778888889888862
Q ss_pred CCcEEeehHHHHHHHHHHHHHH
Q 032163 89 NPFGVVLGGIIGQALCTTAAVI 110 (146)
Q Consensus 89 ~p~~V~~Ga~~al~l~t~laV~ 110 (146)
...+|.+|+=.|..+.+-+-.+
T Consensus 84 ~Ai~vilGANIGTt~Ta~iva~ 105 (533)
T COG1283 84 QAIGVILGANIGTTVTAWIVAL 105 (533)
T ss_pred hhhhheeccchhHHHHHHHHHH
Confidence 3578999999888877655444
No 48
>PRK10229 threonine efflux system; Provisional
Probab=59.47 E-value=65 Score=25.06 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=51.0
Q ss_pred ccchHHHHHHHHhccc---CCcEEeehHHHHHHHHHHHHHHHHHHhhhhcc--HHHHHHHHHHHHHHHHHHHhcCC
Q 032163 73 WGDKSQLATIGLAADE---NPFGVVLGGIIGQALCTTAAVIGGKSLASQIS--EKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 73 lGDKTQlati~LAa~~---~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip--~~~v~~~agilFl~fG~~~L~~~ 143 (146)
-|. ..+.++.-+.++ +.....+|...|..+...+++..-..+.+..| ...+++++++-.+.+|..++++.
T Consensus 19 PGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~~~ 93 (206)
T PRK10229 19 PGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLRGA 93 (206)
T ss_pred CCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 465 556666666665 34667889999999988888888877777777 34677777766677898888754
No 49
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=58.87 E-value=62 Score=26.05 Aligned_cols=48 Identities=13% Similarity=0.072 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHHHHHHhcCC
Q 032163 96 GGIIGQALCTTAAVIGGKSLASQIS---EKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 96 Ga~~al~l~t~laV~~G~~l~~~ip---~~~v~~~agilFl~fG~~~L~~~ 143 (146)
.+.....+.+.+.-..++++.+++. .+.+.++.|++-...|+-+..++
T Consensus 150 ~ai~~~~~~~~~~l~~s~~l~~~LG~~g~~il~Ri~GliL~aIaVq~i~~G 200 (201)
T TIGR00427 150 LAIALVALITWLLFRYSAFIIRRLGRTGINVITRIMGLLLAAIAVEFIVTG 200 (201)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444455555666666777777774 46788889999999998877654
No 50
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=58.79 E-value=1.2e+02 Score=26.44 Aligned_cols=73 Identities=15% Similarity=0.119 Sum_probs=50.8
Q ss_pred HHhhcccchHHH---HHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 68 TFFGEWGDKSQL---ATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 68 iFlAElGDKTQl---ati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
+..-|.=|-.+= ..+..|..++|+.|+.+.+.|....-.+.-++.+.+.+. .++++.++++-...|+.++.++
T Consensus 195 li~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf---~~L~~~~a~iL~fIGvkmll~~ 270 (302)
T TIGR03718 195 LVLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERF---HYLKYGLAVILVFIGVKMLLHA 270 (302)
T ss_pred HHHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhh
Confidence 334455565442 233444557899999999988887766666677777553 5778888888888898888763
No 51
>TIGR00948 2a75 L-lysine exporter.
Probab=58.13 E-value=32 Score=26.26 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=44.8
Q ss_pred HHHHhccc-CCcEEeehHHHHHHHHHHHHHHHHHHhhhhcc--HHHHHHHHHHHHHHHHHHHhcCC
Q 032163 81 TIGLAADE-NPFGVVLGGIIGQALCTTAAVIGGKSLASQIS--EKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 81 ti~LAa~~-~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip--~~~v~~~agilFl~fG~~~L~~~ 143 (146)
++..++++ +-....+|...|..+...++++.-..+.+..| ...+++++++-.+.+|..++++.
T Consensus 12 vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 12 VLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443 34567888889988888888888777766665 34677777777777999888754
No 52
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters. In the kidney these proteins may be involved in actively transporting phosphate into cells via Na+ cotransport in the renal brush border membrane [].; GO: 0015321 sodium-dependent phosphate transmembrane transporter activity, 0044341 sodium-dependent phosphate transport, 0016020 membrane
Probab=56.22 E-value=51 Score=24.95 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=43.4
Q ss_pred HHHhhHHhhhhccCcCchHHhhcccchhhhhhhHHHHHHHHHHHhhcccchHHHHHHHHhccc-----CCcEEeehHHHH
Q 032163 26 WFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADE-----NPFGVVLGGIIG 100 (146)
Q Consensus 26 ~~FG~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~aF~liFlAElGDKTQlati~LAa~~-----~p~~V~~Ga~~a 100 (146)
+++|++.+.+..+.-.+++-++-.++..+ .-+..++....+..+.-----+=..++.|+... +..++.+|+-+|
T Consensus 2 ~l~gl~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~l~G~~~T~l~QSSsa~~~i~v~l~~~g~l~~~~al~~ilGaNiG 80 (142)
T PF02690_consen 2 FLFGLRLLSSGLKPLAGPRLRALLARLTS-NPLLAFLLGALLTALVQSSSAVTLIVVSLVAAGVLSLEQALAIILGANIG 80 (142)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcccCHHHHHHHHHhhhHH
Confidence 57788888877655333322222211111 012234444444444433334444566666653 345677777777
Q ss_pred HHHHHHHHHHH
Q 032163 101 QALCTTAAVIG 111 (146)
Q Consensus 101 l~l~t~laV~~ 111 (146)
..+...++...
T Consensus 81 tt~~~~l~a~~ 91 (142)
T PF02690_consen 81 TTITALLAALG 91 (142)
T ss_pred HHHHHHHHHhh
Confidence 77766666643
No 53
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=54.43 E-value=36 Score=31.53 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=34.9
Q ss_pred eehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHh
Q 032163 94 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 140 (146)
Q Consensus 94 ~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L 140 (146)
.+|.++...+...++..+|..+...+...++....+++|+++|+.++
T Consensus 216 ~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 216 VQGMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLSILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 55666666666666667777776555556888889999999999875
No 54
>PF13347 MFS_2: MFS/sugar transport protein
Probab=53.58 E-value=55 Score=27.79 Aligned_cols=41 Identities=15% Similarity=-0.029 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHh
Q 032163 100 GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 140 (146)
Q Consensus 100 al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L 140 (146)
...+.+.++..+...+.+|+..+.+-..+.+++....++..
T Consensus 268 ~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~ 308 (428)
T PF13347_consen 268 IFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLF 308 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHH
Confidence 45666677777788888888888877777777766665543
No 55
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=51.98 E-value=45 Score=27.11 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=40.0
Q ss_pred eehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCCCC
Q 032163 94 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 145 (146)
Q Consensus 94 ~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~~~ 145 (146)
+-.++..++++|++.+......-++++ .++++++++-++||..+++-..|
T Consensus 22 I~~AT~~livAt~i~l~~~w~~~rkv~--km~l~s~~~v~vFG~lTl~f~~d 71 (180)
T COG2917 22 IYAATAVLIVATVIQLAILWIKYRKVE--KMQLISGVVVVVFGGLTLIFHND 71 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHhchhHhhccCc
Confidence 445667788899999999999888765 46888999999999999876544
No 56
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=50.12 E-value=88 Score=27.47 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=51.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhHHhhhhccCcCc-hHHhhcccchhhhhhhHHHHHHHHHHHhhcccchHHHHHHHH
Q 032163 6 GNYIRDAIQQVSQHFIILTSWFHGLRISKCFFSFQAD-DELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGL 84 (146)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~FG~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~aF~liFlAElGDKTQlati~L 84 (146)
|.|+-+.+--.+.-.|. ..-+..-++..-.++.+ |+.++..++...+.|.|++....+.+..+.+-.+. .|
T Consensus 45 G~~lp~~~~G~lvl~m~---~la~~~~v~~g~~~~~s~e~r~~~a~rlGnklFiPal~i~v~a~~~a~~~~~l-----~l 116 (308)
T PF06166_consen 45 GDYLPPFVVGILVLVMA---LLAGFGQVGIGSYKEPSEEEREASAKRLGNKLFIPALLIPVVAVIGAQLFTKL-----PL 116 (308)
T ss_pred CccchhHHHHHHHHHHH---HHHHcCCCCCCCCCCCCHHHHHHHHHHhcCeehHHHHHHHHHHHHHHHHhccc-----cc
Confidence 55665555555443333 33333444433333333 33444444555567888888888777776533332 00
Q ss_pred hcccCCcEEeehHHHHHHHHHHHHHHHHHHhhh
Q 032163 85 AADENPFGVVLGGIIGQALCTTAAVIGGKSLAS 117 (146)
Q Consensus 85 Aa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~ 117 (146)
.+|.- |+..++.+.+.++.+..-.+.+
T Consensus 117 ---~d~~~---~tlv~lgig~i~Ali~a~~itk 143 (308)
T PF06166_consen 117 ---LDPKN---GTLVGLGIGAIVALIVALIITK 143 (308)
T ss_pred ---cCCCc---chHHHHHHHHHHHHHHHHHHhC
Confidence 12211 6666677777777776666654
No 57
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=50.02 E-value=1.1e+02 Score=26.28 Aligned_cols=70 Identities=13% Similarity=0.047 Sum_probs=47.9
Q ss_pred HHHhhcccchHHHHHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhc--cHHHHH---HHHHHHHHHHHHHHhc
Q 032163 67 ITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQI--SEKIVA---LSGGVLFIVFGIQSFL 141 (146)
Q Consensus 67 liFlAElGDKTQlati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~i--p~~~v~---~~agilFl~fG~~~L~ 141 (146)
+.+..-+|+-+.=+...++. -+|..+.+.+...+++...+...++. ..++++ ++++++=+++|+++.|
T Consensus 199 LL~a~~lg~~~~Gi~~vlaf-------slGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~~ 271 (279)
T PRK10019 199 LLICIQLKALTLGATLVLSF-------SIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMGV 271 (279)
T ss_pred HHHHHHhchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556555555555544 36777777777777766666666665 455666 9999999999999887
Q ss_pred CC
Q 032163 142 SP 143 (146)
Q Consensus 142 ~~ 143 (146)
+.
T Consensus 272 ~~ 273 (279)
T PRK10019 272 HG 273 (279)
T ss_pred HH
Confidence 64
No 58
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=49.78 E-value=1.3e+02 Score=23.71 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 032163 121 EKIVALSGGVLFIVFGIQSFL 141 (146)
Q Consensus 121 ~~~v~~~agilFl~fG~~~L~ 141 (146)
.+++++++|++.+++|+|.+.
T Consensus 191 ~~~i~~~~G~lli~~g~~~l~ 211 (211)
T PF02683_consen 191 SRWIKRISGILLIALGLYLLT 211 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 568999999999999999863
No 59
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=48.53 E-value=1.1e+02 Score=22.75 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=27.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHhhHHhh
Q 032163 3 NRGGNYIRDAIQQVSQHFIILTSWFHGLRISK 34 (146)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~FG~~~l~ 34 (146)
+.-|+++|.++.+...-+|+-+++.||-...+
T Consensus 8 ~~lg~~lrp~l~eIs~AlvA~lLVv~G~~IN~ 39 (106)
T PF11872_consen 8 AQLGRWLRPYLSEISLALVACLLVVYGDDINR 39 (106)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Confidence 56799999999999999999999999976554
No 60
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=48.48 E-value=57 Score=25.44 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=49.3
Q ss_pred hcccchHHHHHHHHhccc---CCcEEeehHHHHHHHHHHHHHHHHHHhhhhccH--HHHHHHHHHHHHHHHHHHhcCC
Q 032163 71 GEWGDKSQLATIGLAADE---NPFGVVLGGIIGQALCTTAAVIGGKSLASQISE--KIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 71 AElGDKTQlati~LAa~~---~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~--~~v~~~agilFl~fG~~~L~~~ 143 (146)
.--|.. .+.++.-++++ +.+...+|...|..+...++++.-..+.+..|. ..++++++.-.+.+|..+++..
T Consensus 18 ~sPGP~-~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s~ 94 (205)
T PRK10520 18 LSPGSG-AINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRAA 94 (205)
T ss_pred cCCchh-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334443 33444444443 457788899999999988888777777666553 4577777777778999988764
No 61
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=47.86 E-value=1.2e+02 Score=26.14 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=41.3
Q ss_pred HHHHHhhHHhhhhccCcCchHHhhcccchhhhhhhHHHHHHHHHHHhhcccchHHHHHHHHhccc-----CCcEEeehHH
Q 032163 24 TSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADE-----NPFGVVLGGI 98 (146)
Q Consensus 24 ~~~~FG~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~aF~liFlAElGDKTQlati~LAa~~-----~p~~V~~Ga~ 98 (146)
.++++|++.+++..+.-.++..++-..+..+.-+ ..+.....+..+------|=..++.++... ....+.+|+-
T Consensus 12 gl~l~Gl~~~~~~l~~~~g~~~~~~l~~~t~~~~-~a~l~G~~~Tal~QSSsa~t~i~i~lv~~G~l~~~~al~iilGAN 90 (307)
T TIGR00704 12 AFLLWGMHIVRTGVMRVFGARLRTVLSRSTEKKP-LAFLAGIGVTAIVQSSNATTVLVISFVAAGVLSLAPAIVIILGAN 90 (307)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhh
Confidence 7899999999988876433322222111111011 123333333333333333444555555542 2356666666
Q ss_pred HHHHHHHHHH
Q 032163 99 IGQALCTTAA 108 (146)
Q Consensus 99 ~al~l~t~la 108 (146)
+|-.+...+.
T Consensus 91 iGTt~t~~l~ 100 (307)
T TIGR00704 91 VGTTLTARIL 100 (307)
T ss_pred HHHHHHHHHH
Confidence 6655554444
No 62
>PRK10229 threonine efflux system; Provisional
Probab=47.38 E-value=1.3e+02 Score=23.31 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 032163 122 KIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 122 ~~v~~~agilFl~fG~~~L~~ 142 (146)
+++++++|++++.+|++.+.+
T Consensus 185 ~~in~~~g~~li~~~i~l~~~ 205 (206)
T PRK10229 185 KWIDGFAGALFAGFGIHLIIS 205 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999998765
No 63
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=46.60 E-value=69 Score=25.05 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=43.2
Q ss_pred HHHHHHHhccc---CCcEEeehHHHHHHHHHHHHHHHHHHhhhhccH--HHHHHHHHHHHHHHHHHHhcCC
Q 032163 78 QLATIGLAADE---NPFGVVLGGIIGQALCTTAAVIGGKSLASQISE--KIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 78 Qlati~LAa~~---~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~--~~v~~~agilFl~fG~~~L~~~ 143 (146)
.+..+.-+.++ +.+....|...|..+...++..+...+.+..|. ..++++++.-.+.+|..+++++
T Consensus 24 ~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s~ 94 (195)
T PRK10323 24 NILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSP 94 (195)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444443 456889999999999877777655566555553 3466666655566998888754
No 64
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=44.88 E-value=85 Score=24.78 Aligned_cols=48 Identities=19% Similarity=0.059 Sum_probs=33.4
Q ss_pred ehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCCC
Q 032163 95 LGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 144 (146)
Q Consensus 95 ~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~~ 144 (146)
.-++.+.+.++.+.+.......+++| .++++++++=++||..+++-..
T Consensus 23 ~~At~~~i~~~~~~v~~~~~~~r~v~--~~~~is~~lv~vfG~lTl~~~d 70 (176)
T PF04279_consen 23 FVATAVLIVATLAQVAYSWIRRRKVP--KMQWISLVLVLVFGGLTLLFHD 70 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCc--hhHHHHHHHHHHHHHHHHHhCC
Confidence 33455666677777777777776554 4578888888888888776543
No 65
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=44.75 E-value=1.4e+02 Score=24.83 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=37.2
Q ss_pred HHHHHHhcccCC----cEEeehHHHHHHHHHHHHHHHHHHhh--hhccHHHHHHHHHHHHHHHHHHHhc
Q 032163 79 LATIGLAADENP----FGVVLGGIIGQALCTTAAVIGGKSLA--SQISEKIVALSGGVLFIVFGIQSFL 141 (146)
Q Consensus 79 lati~LAa~~~p----~~V~~Ga~~al~l~t~laV~~G~~l~--~~ip~~~v~~~agilFl~fG~~~L~ 141 (146)
+.++.++.+++. ..++.|..++++ --..-.+++.++ ..+|+-+.-++.-++|+++|++.++
T Consensus 287 lla~~l~~~~~r~~~~~~~~~~l~~~~~--~~~~~~~~~~l~~~~~l~p~~a~w~p~ii~~~~~~~l~~ 353 (354)
T PF03739_consen 287 LLALPLGIRFPRSGRISSLFIALLLGFL--YYILFSFFSSLGENGNLPPFIAAWLPNIIFLILGLYLLR 353 (354)
T ss_pred HHHHHHhhccccCCchHHHHHHHHHHHH--HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 445666766422 233333333333 222333333433 4689999999999999999998875
No 66
>COG1238 Predicted membrane protein [Function unknown]
Probab=44.66 E-value=1.5e+02 Score=23.28 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHhhcccchHHHHHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHH
Q 032163 58 SPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEK 122 (146)
Q Consensus 58 ~~~f~~aF~liFlAElGDKTQlati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~ 122 (146)
...|..+|+--.+-=.+.---++.+.++- ++|+...+=+++|..+-+...-.+|+...+.+..+
T Consensus 20 ~~Lf~vaF~eat~lP~~sE~~l~~m~~~~-~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~ 83 (161)
T COG1238 20 AGLFIVAFLEATLLPVPSEVLLAPMLLLG-LNAWILALVATLGSVLGGLVNYALGRFLPEFIARR 83 (161)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHcC-CchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHH
Confidence 35677777777777777778888888887 89999999999999998888888888887766553
No 67
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=43.86 E-value=77 Score=27.75 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=43.7
Q ss_pred hHHHHHHHHhcccC-CcEEeehHHHHH--------HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 76 KSQLATIGLAADEN-PFGVVLGGIIGQ--------ALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 76 KTQlati~LAa~~~-p~~V~~Ga~~al--------~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
|+-++|-..+.+.+ +..+.++..++. .+.-...|+-++.+....++.|+..++.++-+.+|+|++|..
T Consensus 76 Kaviasylia~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~~~s~~~lE~~S~~Ll~~~G~w~~~r~ 152 (303)
T COG2215 76 KAVIATYLIAHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITFALSEPWLELISFLLLILLGLWLLWRT 152 (303)
T ss_pred hHHHHHHHHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554432 234444433322 223334555567777778899999999999999999998764
No 68
>COG1279 Lysine efflux permease [General function prediction only]
Probab=43.01 E-value=1.9e+02 Score=23.87 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=63.1
Q ss_pred HHHHHhhHHhhhhccCcCchHHhhcccchhhhhhhHHHHHHHHHHHhhc--ccchHHHHHHHHhcccC---CcEEeehHH
Q 032163 24 TSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGE--WGDKSQLATIGLAADEN---PFGVVLGGI 98 (146)
Q Consensus 24 ~~~~FG~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~aF~liFlAE--lGDKTQlati~LAa~~~---p~~V~~Ga~ 98 (146)
-+.++|..+++++...++.++..+..+.. .......+..+.++=- .=| |-..-=+++++|+ .|...+|++
T Consensus 79 FLl~yg~~a~~~a~~~~~~~~~~~~~~~~----~~~~l~~alavT~LNPhvyLD-tvvliGs~~~~~~~~~k~~F~~Ga~ 153 (202)
T COG1279 79 FLLYYGLLALKSAPRGPSQLQVAEFTKLK----LKKVLLFALAVTLLNPHVYLD-TVVLIGSLAAQLSDEAKWFFALGAI 153 (202)
T ss_pred HHHHHHHHHHHhhccchhhcccccccccc----HHHHHHHHHHHHHhCchhhhh-hHhhhhhhhhhcCcchhhHHHHHHH
Confidence 45678999999887752322222211111 1234444444444310 011 2222224566663 366677877
Q ss_pred HHHHHHHHHHHHHHHHhhhhc----cHHHHHHHHHHHHHHHHHHHhcC
Q 032163 99 IGQALCTTAAVIGGKSLASQI----SEKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 99 ~al~l~t~laV~~G~~l~~~i----p~~~v~~~agilFl~fG~~~L~~ 142 (146)
.+-.+.=..=.+.++++.+.. --|+++.+.|++....|+...++
T Consensus 154 ~aS~~WF~~L~~~a~~l~~~~~~pk~~riin~vva~vM~~ia~~L~~~ 201 (202)
T COG1279 154 SASFLWFFLLALGARWLSPLLANPKAWRIINLVVAVVMWALAVKLAVQ 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHchhccCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 776665444445666665444 35678899999999998877654
No 69
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=42.99 E-value=69 Score=27.47 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 032163 121 EKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 121 ~~~v~~~agilFl~fG~~~L~~ 142 (146)
..++..+++++-+.+|+|+++.
T Consensus 87 ~~~le~~S~~lii~lGl~ll~r 108 (279)
T PRK10019 87 EPWLQLISAVIIISTAFWMFWR 108 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999875
No 70
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=42.84 E-value=1.3e+02 Score=24.15 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhh--ccHHHHHHHHHHHHHHHHHHHhcCCC
Q 032163 105 TTAAVIGGKSLASQ--ISEKIVALSGGVLFIVFGIQSFLSPV 144 (146)
Q Consensus 105 t~laV~~G~~l~~~--ip~~~v~~~agilFl~fG~~~L~~~~ 144 (146)
-.+..++|+.+-+. ++....+..+|++.+..|+-++...+
T Consensus 51 ll~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~ 92 (203)
T PF01914_consen 51 LLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSP 92 (203)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455667777664 48899999999999999999997654
No 71
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=37.40 E-value=1.2e+02 Score=23.90 Aligned_cols=45 Identities=29% Similarity=0.325 Sum_probs=32.3
Q ss_pred eehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHh
Q 032163 94 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 140 (146)
Q Consensus 94 ~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L 140 (146)
.+|....+.+.......+|+.+.+. .+++..+.+++.+++|+..+
T Consensus 48 ~~G~~~~~~~lG~~~~~~g~~~~~~--~~~~~~i~g~~~i~~Gl~~l 92 (211)
T PF02683_consen 48 VLGFALVFALLGLGAGALGSFFGQI--SPWLYIIAGVLLILFGLSLL 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666777776532 46888899999999998776
No 72
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=37.26 E-value=2.6e+02 Score=23.78 Aligned_cols=61 Identities=7% Similarity=0.096 Sum_probs=37.9
Q ss_pred HHHHhcccCC----cEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhc
Q 032163 81 TIGLAADENP----FGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 141 (146)
Q Consensus 81 ti~LAa~~~p----~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~ 141 (146)
++.|+.+.+. ..+.+|..++..--....+.-.-.....+|+-.--+.--++|++.|++.++
T Consensus 283 avpl~~~~~R~g~~~~i~~~i~~~~~y~~l~~~~~~l~~~g~lpp~la~Wlp~i~~~~~~~~l~~ 347 (366)
T PRK15120 283 VVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQTSLRSNGGKGKLDPMIWMWAVNLIYLALAIVLNL 347 (366)
T ss_pred HhhhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 5777765432 344444444443333333332233446789998899999999999999874
No 73
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=36.83 E-value=76 Score=23.32 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHH
Q 032163 99 IGQALCTTAAVIGGKSLASQISEKI 123 (146)
Q Consensus 99 ~al~l~t~laV~~G~~l~~~ip~~~ 123 (146)
..+++.+++++.+|+|+=++.|.+.
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~ 74 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPF 74 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 3466778889999999998887644
No 74
>PF04955 HupE_UreJ: HupE / UreJ protein; InterPro: IPR007038 This family of proteins are hydrogenase/urease accessory proteins. They contain many conserved histidines that are likely to be involved in nickel binding.
Probab=36.73 E-value=90 Score=24.78 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=33.3
Q ss_pred EEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Q 032163 92 GVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQ 138 (146)
Q Consensus 92 ~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~ 138 (146)
.-..|...+..+....+...|+.+.++.+.+ ..+..|......|++
T Consensus 134 ~y~~G~~~at~~l~~~g~~~~~~~~~~~~~~-~~r~~G~~ia~~G~~ 179 (180)
T PF04955_consen 134 LYAAGFVLATALLHAAGLALGRLLRRRWAAR-AVRAAGGAIAAAGLM 179 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHh
Confidence 3567777777777777888888887766655 677777777777764
No 75
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=35.75 E-value=1.2e+02 Score=23.98 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=40.9
Q ss_pred cCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 88 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 88 ~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
++++..+.|...|..+-..+-..+...+.. . .+++.++|+.-+.-|...+.+.
T Consensus 29 ~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~-~--~~i~~igG~~Ll~~a~k~~~~~ 81 (183)
T PF03741_consen 29 QRRKALFWGIIGAIVLRIIFIFLASWLLSI-F--PWILLIGGLFLLYIAIKLLHEE 81 (183)
T ss_pred HhhhhHHHhHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999997776666555555543 2 7899999999999998888774
No 76
>PRK11111 hypothetical protein; Provisional
Probab=35.50 E-value=2.2e+02 Score=23.16 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHHHHHHhcCC
Q 032163 98 IIGQALCTTAAVIGGKSLASQIS---EKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 98 ~~al~l~t~laV~~G~~l~~~ip---~~~v~~~agilFl~fG~~~L~~~ 143 (146)
.+...+.+.+.-..+.++.+++. .+.+.++.|++-..+|+-+..++
T Consensus 156 i~~~~~~~~l~l~~s~~i~r~LG~~G~~vi~RimGliL~aiaVq~i~~G 204 (214)
T PRK11111 156 IALFALCCWLLFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTG 204 (214)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555666666554 45788888988888888766543
No 77
>COG0795 Predicted permeases [General function prediction only]
Probab=32.70 E-value=3.1e+02 Score=23.23 Aligned_cols=66 Identities=15% Similarity=0.267 Sum_probs=42.6
Q ss_pred HHHHHHhcccCC-----cEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCCC
Q 032163 79 LATIGLAADENP-----FGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 144 (146)
Q Consensus 79 lati~LAa~~~p-----~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~~ 144 (146)
++++.++.+.+. ..++.|.+++++.-........-.....+|+-..-+.-.++|+..|+|.++...
T Consensus 292 lla~~l~~~~~R~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~p~~a~~~p~~i~l~~~~~l~~~~~ 362 (364)
T COG0795 292 LLALPLSLRNPRSGRLGLRLLGGILLGLLFYVLLFLLGALALAGKLPPFLAAWLPNLVFLALGLWLLRRKE 362 (364)
T ss_pred HHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445666665422 223334444444444444444445567889999999999999999999987543
No 78
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=31.86 E-value=2.3e+02 Score=23.05 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHh-------hhhccHHHHHHHHHHHHHHHHHHHh
Q 032163 97 GIIGQALCTTAAVIGGKSL-------ASQISEKIVALSGGVLFIVFGIQSF 140 (146)
Q Consensus 97 a~~al~l~t~laV~~G~~l-------~~~ip~~~v~~~agilFl~fG~~~L 140 (146)
..+...+++-+++++|..+ ....-..++.-+++..|+..++..+
T Consensus 235 ~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv~~~el 285 (317)
T PF02535_consen 235 LLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYVAFVEL 285 (317)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888899999999999 2333345566677777887777654
No 79
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=31.72 E-value=1.7e+02 Score=23.16 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=40.7
Q ss_pred CcEEeehHHHHHHHHHHHHHHHHHHhhhh------ccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 90 PFGVVLGGIIGQALCTTAAVIGGKSLASQ------ISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 90 p~~V~~Ga~~al~l~t~laV~~G~~l~~~------ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
-+..+.|..++..........+.+.+.+. -...+++++.|++++.+|.+.....
T Consensus 31 ~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~~~~~~~ 90 (214)
T PF11139_consen 31 LLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAVRVWRRR 90 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35566777777777777777777777633 3456899999999999999988765
No 80
>PRK09304 arginine exporter protein; Provisional
Probab=31.26 E-value=1.8e+02 Score=22.78 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=41.5
Q ss_pred HHhccc-CCcEEeehHHHHHHHHHHHHHHHHHHhhhhcc--HHHHHHHHHHHHHHHHHHHhcCC
Q 032163 83 GLAADE-NPFGVVLGGIIGQALCTTAAVIGGKSLASQIS--EKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 83 ~LAa~~-~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip--~~~v~~~agilFl~fG~~~L~~~ 143 (146)
.-+.++ .......|...|..+...++++.-..+.+..| ...++++++.-.+-+|..++++.
T Consensus 28 ~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~rs~ 91 (207)
T PRK09304 28 NQGIRRQYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFKTA 91 (207)
T ss_pred HHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334443 35667788888888888887777776665555 34566667766677898887653
No 81
>PRK00944 hypothetical protein; Provisional
Probab=31.15 E-value=1.9e+02 Score=23.84 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=40.2
Q ss_pred eehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 94 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 94 ~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
..|......+...++.++|-++++++|.. +...-++.|=++-.+..++.
T Consensus 125 Y~GDSVlNSv~D~~~M~~GF~~A~rlPv~-vtv~lai~fEl~~~~~IRDn 173 (195)
T PRK00944 125 YYGDSILNSVMDTLAMVLGFLFAARLPVW-LTVAIAIFFEIFTGWLIRDN 173 (195)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhccc
Confidence 46888889999999999999999999864 56677778877777777664
No 82
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=31.09 E-value=89 Score=22.17 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=23.3
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhcC
Q 032163 115 LASQISEKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 115 l~~~ip~~~v~~~agilFl~fG~~~L~~ 142 (146)
.-+++|++.-..+.-++|++|++..+|.
T Consensus 18 ~c~~Lsp~~R~~vvl~ml~~fa~l~ly~ 45 (85)
T PF13150_consen 18 YCGRLSPKQRLRVVLVMLVLFAALCLYM 45 (85)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999887763
No 83
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=30.94 E-value=2.7e+02 Score=21.98 Aligned_cols=132 Identities=10% Similarity=-0.017 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccCcCchHHhhcccchhhhhhhHHHHHHHHHHHhhcccch-HHHHHHHHhcc-c
Q 032163 11 DAIQQVSQHFIILTSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDK-SQLATIGLAAD-E 88 (146)
Q Consensus 11 ~~~~~~~~~~~~~~~~~FG~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~aF~liFlAElGDK-TQlati~LAa~-~ 88 (146)
+.....+|-.+-..++.+|.+..+..-+++++++..+...+..+..-.+.+..++. ..+.|.-+- -.+++++.=+. .
T Consensus 65 ~~~~~~~~l~lGv~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~-~~~~~~~~~~~~laa~~~I~~~~ 143 (214)
T PF11139_consen 65 SPVVGWLQLVLGVLLLLLAVRVWRRRPRPDPPSRPPRWLARLDSASPGGAFWLGFV-LGLANPKTMLPYLAAIAIIAASG 143 (214)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhcCCchhHHHHHHH-HHHhccccHHHHHHHHHHHHcCC
Confidence 34455566566668888999887755222222222222222222223456777775 555776432 22333332222 2
Q ss_pred CCcEEeehHHHHHHH--------HHHHHHHHHHHhhhhcc------HHHHHHHHHHHHHHHHHHHhcCC
Q 032163 89 NPFGVVLGGIIGQAL--------CTTAAVIGGKSLASQIS------EKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 89 ~p~~V~~Ga~~al~l--------~t~laV~~G~~l~~~ip------~~~v~~~agilFl~fG~~~L~~~ 143 (146)
.+...-.+......+ .....++.++...+.+. ++.-+.+.++++.++|++.+.++
T Consensus 144 ~~~~~~~~~l~~y~~i~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~~G 212 (214)
T PF11139_consen 144 LSPGTQVVALVVYCLIASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLGDG 212 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhh
Confidence 232222222222221 12222233333322221 12345678899999999988765
No 84
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=30.12 E-value=1.9e+02 Score=24.34 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=23.4
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHhcC
Q 032163 116 ASQISEKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 116 ~~~ip~~~v~~~agilFl~fG~~~L~~ 142 (146)
...+|+-.--++--++|+++|++.++.
T Consensus 328 ~g~l~P~laaw~P~iif~~~~~~ll~r 354 (356)
T PRK15071 328 VYGIPPIIGALLPSLLFLGISLYLLRR 354 (356)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999998764
No 85
>PRK09669 putative symporter YagG; Provisional
Probab=29.81 E-value=3.1e+02 Score=23.33 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Q 032163 103 LCTTAAVIGGKSLASQISEKIVALSGGVLFIV 134 (146)
Q Consensus 103 l~t~laV~~G~~l~~~ip~~~v~~~agilFl~ 134 (146)
+...++..+...+.+|...+..-..+.+++.+
T Consensus 275 i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~ 306 (444)
T PRK09669 275 IAGLFGALLSERLLGKFDRVRAFKWTIVAFVI 306 (444)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 33445555556677777776665555444443
No 86
>PRK11111 hypothetical protein; Provisional
Probab=29.78 E-value=2.7e+02 Score=22.66 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhhc--cHHHHHHHHHHHHHHHHHHHhcC
Q 032163 107 AAVIGGKSLASQI--SEKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 107 laV~~G~~l~~~i--p~~~v~~~agilFl~fG~~~L~~ 142 (146)
+..+.|+++-+.. +....+..+|++.+..|+.++..
T Consensus 59 ~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g 96 (214)
T PRK11111 59 ISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISG 96 (214)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 5677888887764 88899999999999999999864
No 87
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=29.25 E-value=2.7e+02 Score=24.18 Aligned_cols=79 Identities=15% Similarity=0.042 Sum_probs=55.1
Q ss_pred HHHHHHHHhhcc---cchHHHHHHHHhcc-----cCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 032163 62 LKAFSITFFGEW---GDKSQLATIGLAAD-----ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFI 133 (146)
Q Consensus 62 ~~aF~liFlAEl---GDKTQlati~LAa~-----~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl 133 (146)
...|....+-|. +|+-...++..+.. +++...+.|...|+++-.+.- .+|.++-++. .++.+++|+..+
T Consensus 62 ~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~i-~~g~~Li~~f--~wi~~ifG~fLi 138 (302)
T TIGR03718 62 ALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIFI-ALGAALIEQF--HWVLYIFGAFLL 138 (302)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh--HHHHHHHHHHHH
Confidence 344555555665 88888777776653 355788888888887766554 4555555443 478999998888
Q ss_pred HHHHHHhcCC
Q 032163 134 VFGIQSFLSP 143 (146)
Q Consensus 134 ~fG~~~L~~~ 143 (146)
.-|..++.+.
T Consensus 139 ~~a~k~~~~~ 148 (302)
T TIGR03718 139 YTGIKMLFEG 148 (302)
T ss_pred HHHHHHHhhc
Confidence 8888888764
No 88
>PRK10739 putative antibiotic transporter; Provisional
Probab=29.25 E-value=2.9e+02 Score=22.22 Aligned_cols=37 Identities=16% Similarity=0.496 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhh--ccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 107 AAVIGGKSLASQ--ISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 107 laV~~G~~l~~~--ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
+..+.|+.+-+. +|....+..+|++.+..|+-++.+.
T Consensus 53 ~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~ 91 (197)
T PRK10739 53 VFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS 91 (197)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 556677777665 4889999999999999999999765
No 89
>PF14007 YtpI: YtpI-like protein
Probab=29.13 E-value=1.4e+02 Score=21.44 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcC
Q 032163 120 SEKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 120 p~~~v~~~agilFl~fG~~~L~~ 142 (146)
++.+++++.|++|+++|+..++.
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~~ 76 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLFA 76 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHHH
Confidence 67888999999999999887754
No 90
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=29.06 E-value=1.6e+02 Score=23.34 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=45.2
Q ss_pred chHHHHHHHHhc-ccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhcc--HHHHHHHHHHHHHHHHHHHhcCC
Q 032163 75 DKSQLATIGLAA-DENPFGVVLGGIIGQALCTTAAVIGGKSLASQIS--EKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 75 DKTQlati~LAa-~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip--~~~v~~~agilFl~fG~~~L~~~ 143 (146)
|-...++-++.. +.+-..+.+|..+|..+...+++..=..+...-| -..++++++.-.+-+|+.+++..
T Consensus 23 ~~~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 23 DNLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred cHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444 2355778889888888888777775233333333 35688888888888999988864
No 91
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=28.96 E-value=4.3e+02 Score=23.72 Aligned_cols=37 Identities=11% Similarity=0.001 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Q 032163 98 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIV 134 (146)
Q Consensus 98 ~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~ 134 (146)
+.-..+.-+++..+|..+..|+.+|..+......+++
T Consensus 249 vs~~Ll~~Gv~~~~Gn~~gGrl~dr~~~~~l~~~~~l 285 (394)
T COG2814 249 VSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLL 285 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHH
Confidence 3334445555556666666555555444443333333
No 92
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=28.88 E-value=2e+02 Score=24.76 Aligned_cols=115 Identities=16% Similarity=0.151 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhHHhhhhccC-cCchHHhhcccchhhhhhhHHHHHHHHHHHhhcccchHHHHHHHHhccc-----CCcEE
Q 032163 20 FIILTSWFHGLRISKCFFSF-QADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADE-----NPFGV 93 (146)
Q Consensus 20 ~~~~~~~~FG~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~aF~liFlAElGDKTQlati~LAa~~-----~p~~V 93 (146)
++-.-+.++|+..+.+..+. .+++.-.+...... ....-.+...+++..+.-----+=..+++|++.. ...++
T Consensus 133 l~G~gllf~gl~~m~~~~~pl~~~~~~~~~~~~l~-~~~~~~~l~G~~lT~ivQSSsA~i~i~~~la~~G~i~~~~a~~l 211 (307)
T TIGR00704 133 GIGLGLIFLALELISQLVTPLTQANGVQVIFASLT-GSILLDLLIGAVLTIISHSSSAAVLITATLTAAGIIGFPVALCL 211 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 33348889999999877654 22211111111100 0001123333333433322222223344455542 24677
Q ss_pred eehHHHHHHHHHHHHHHHHHHhhhhccHHH--HHHHHHHHHHHH
Q 032163 94 VLGGIIGQALCTTAAVIGGKSLASQISEKI--VALSGGVLFIVF 135 (146)
Q Consensus 94 ~~Ga~~al~l~t~laV~~G~~l~~~ip~~~--v~~~agilFl~f 135 (146)
.+|+=.|-.+...++...+..-++|+..-. .+.++.++++.+
T Consensus 212 vlGaNiGT~~ta~las~g~~~~arr~Alahllfn~~g~ll~lp~ 255 (307)
T TIGR00704 212 VLGSNLGSGILAMLAASAANAAARRVALGHVLFNVVGSLIILPF 255 (307)
T ss_pred HHhcchhHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887777666666554332 445555555543
No 93
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=25.87 E-value=1.1e+02 Score=25.17 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=40.0
Q ss_pred cCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 88 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 88 ~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
++......|...|..+--++...+...+. ..+++.++|+..+.-|..++.+.
T Consensus 26 ~r~~al~~Gi~gAivlR~i~i~~~~~Ll~----~~~l~~iGG~~Ll~~~~k~l~~~ 77 (215)
T TIGR03716 26 QRKKALFYGLIGAYVFRFIALFLASFLIK----FWWIKAIGALYLLYLAIKHFRKK 77 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678899999999888777766555553 24889999998888888888764
No 94
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=24.76 E-value=2.3e+02 Score=23.89 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=35.7
Q ss_pred HHHHHHhhcccchHHHHHHHHhcc-c--CCcEEeehHH-HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Q 032163 64 AFSITFFGEWGDKSQLATIGLAAD-E--NPFGVVLGGI-IGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIV 134 (146)
Q Consensus 64 aF~liFlAElGDKTQlati~LAa~-~--~p~~V~~Ga~-~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~ 134 (146)
-+...|++.+||.+...++..-.+ . ++.. .|.. .+..+...+....+-.+++|.+.|.+-..+-+++.+
T Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~ 80 (393)
T PRK11195 8 IMAAQFFSALADNALLFAAIALLKELHYPDWS--QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLL 80 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH--HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHH
Confidence 344466677777766554443332 1 2222 2222 233344444444444667888888776666665543
No 95
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=24.43 E-value=1.9e+02 Score=18.03 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcC
Q 032163 107 AAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 107 laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~ 142 (146)
+|.+.|-.+ .+-+|+++++.|+-.++.|+.-+..
T Consensus 3 ~aliaGiLi--Li~PrllnyiVaiyLI~~G~lgL~~ 36 (39)
T PF11295_consen 3 LALIAGILI--LIMPRLLNYIVAIYLIVIGLLGLFG 36 (39)
T ss_pred HHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555554 3458999999999999999887653
No 96
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=24.12 E-value=3.8e+02 Score=21.48 Aligned_cols=37 Identities=16% Similarity=0.348 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhh--ccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 107 AAVIGGKSLASQ--ISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 107 laV~~G~~l~~~--ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
+..+.|+.+-+. ++....+..+|++.+..|+.++...
T Consensus 56 ~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~ 94 (201)
T TIGR00427 56 IFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE 94 (201)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455667777665 4888999999999999999998553
No 97
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=24.04 E-value=2.5e+02 Score=20.55 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032163 122 KIVALSGGVLFIVFGIQSFL 141 (146)
Q Consensus 122 ~~v~~~agilFl~fG~~~L~ 141 (146)
.....++++++++.|.+.++
T Consensus 96 e~~~~l~~l~~l~~~~~~~~ 115 (135)
T PF04246_consen 96 ELWAILGGLLGLALGFLILR 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77778888888887777654
No 98
>PF10755 DUF2585: Protein of unknown function (DUF2585); InterPro: IPR019691 This family is conserved in Proteobacteria. The function is not known, but it is thought to be a transmembrane protein. ; GO: 0005886 plasma membrane
Probab=23.43 E-value=3.4e+02 Score=21.80 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=37.9
Q ss_pred eehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163 94 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 94 ~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~ 143 (146)
..|......+...++.++|-++++++|..+ ...-++.|=++..+..++.
T Consensus 96 Y~GDSV~NSv~D~~~m~~GF~lA~rlPv~~-tv~lai~~E~~~~~~IRDn 144 (165)
T PF10755_consen 96 YFGDSVLNSVSDTLAMVLGFLLARRLPVWV-TVALAIAFELLTGWVIRDN 144 (165)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHhhcc
Confidence 457888889999999999999999998654 5566677766666666653
No 99
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=22.73 E-value=2.2e+02 Score=23.61 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhhhcc-----HHHHHHHHHHHHHHHHHHHhcCC
Q 032163 103 LCTTAAVIGGKSLASQIS-----EKIVALSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 103 l~t~laV~~G~~l~~~ip-----~~~v~~~agilFl~fG~~~L~~~ 143 (146)
++-.+=|..++.+++.=| |++-|++.+++++..|++.+++.
T Consensus 149 v~I~iL~~~a~~la~ip~I~evlEk~sr~i~~~V~I~LGlfIl~E~ 194 (205)
T COG4300 149 VMIYILVFLAQKLAQIPPIGEVLEKYSRWIVAFVYIGLGLFILYEN 194 (205)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhheeEEeC
Confidence 334445666777765433 78999999999999999998875
No 100
>PRK10189 MATE family multidrug exporter; Provisional
Probab=22.62 E-value=5.4e+02 Score=22.77 Aligned_cols=59 Identities=20% Similarity=0.152 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcccchHHHHHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHH
Q 032163 62 LKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVA 125 (146)
Q Consensus 62 ~~aF~liFlAElGDKTQlati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~ 125 (146)
....-..+++.+|| ..+++.+++.+.. .+.-.....++++.+++.|+.++.+=+++.-+
T Consensus 48 ~~~vd~~~vg~lG~-~alAA~~i~~~i~----~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~ 106 (478)
T PRK10189 48 MGVLSTFLVSWLGK-EAMAGVGLADSFN----MVIMAFFAAIDLGTTVVVAFSLGKRDRRRARA 106 (478)
T ss_pred HHHHHHHHHHhcCH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 34444677888887 5788888887642 34455666777888889999988765555433
No 101
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=21.87 E-value=2.3e+02 Score=24.18 Aligned_cols=54 Identities=19% Similarity=0.123 Sum_probs=0.0
Q ss_pred ccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhcc-------HHHHHHHHHHHHHHHHHHHh
Q 032163 87 DENPFGVVLGGIIGQALCTTAAVIGGKSLASQIS-------EKIVALSGGVLFIVFGIQSF 140 (146)
Q Consensus 87 ~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip-------~~~v~~~agilFl~fG~~~L 140 (146)
++....|+.|+.+|++++-.+++.+-......-. +..+..++.++-..++.|+.
T Consensus 35 ~~~~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~~Wm~ 95 (283)
T TIGR00145 35 TRLRGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGLWML 95 (283)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
No 102
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=21.59 E-value=2.3e+02 Score=18.09 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcC
Q 032163 96 GGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 96 Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~ 142 (146)
+..-.....+.....+|-+-...-+-..--+..+.+|.+++..++-.
T Consensus 3 ~~~~~~f~i~~~~~~iGl~~~~~~l~~KGy~~~~~l~~l~s~~tl~K 49 (53)
T PF05360_consen 3 GQSWISFGISIVLMLIGLWNAPLDLSEKGYYAMGLLFLLFSAFTLQK 49 (53)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34445566677777788887665555666788899999999888754
No 103
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=20.82 E-value=3.5e+02 Score=22.55 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhhhccHHHHH---HHHHHHHHHHHHHHhcCC
Q 032163 101 QALCTTAAVIGGKSLASQISEKIVA---LSGGVLFIVFGIQSFLSP 143 (146)
Q Consensus 101 l~l~t~laV~~G~~l~~~ip~~~v~---~~agilFl~fG~~~L~~~ 143 (146)
..++-.++-++|..+.+++|+|.-+ ...|+.=+..|+.+..+.
T Consensus 7 N~~aIl~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~ 52 (226)
T PF04474_consen 7 NALAILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKG 52 (226)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3444555666667777888887643 445555566777665543
No 104
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=20.69 E-value=1.2e+02 Score=18.68 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=21.1
Q ss_pred EeehHHHHHHHHHHHHHHHHHHhhhh
Q 032163 93 VVLGGIIGQALCTTAAVIGGKSLASQ 118 (146)
Q Consensus 93 V~~Ga~~al~l~t~laV~~G~~l~~~ 118 (146)
...|.++|++-+|..+..+..++.-+
T Consensus 5 lL~GiVLGlipvTl~GlfvaAylQYr 30 (37)
T CHL00008 5 LLFGIVLGLIPITLAGLFVTAYLQYR 30 (37)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHh
Confidence 35789999999999998888877643
No 105
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=20.38 E-value=1.2e+02 Score=18.59 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=21.1
Q ss_pred EeehHHHHHHHHHHHHHHHHHHhhhh
Q 032163 93 VVLGGIIGQALCTTAAVIGGKSLASQ 118 (146)
Q Consensus 93 V~~Ga~~al~l~t~laV~~G~~l~~~ 118 (146)
...|.++|++-+|..+..+..++.-+
T Consensus 5 lL~GiVLGlipiTl~GlfvaAylQYr 30 (37)
T PRK00665 5 LLCGIVLGLIPVTLAGLFVAAWNQYK 30 (37)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHh
Confidence 35789999999999998888887643
No 106
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=20.23 E-value=3.9e+02 Score=21.72 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=48.4
Q ss_pred cchHHHHHHHHhcccC-CcEEeehHHHHHHHHHHHHHHHHHHhhhhc---cHHHHHHHHHHHHHHHHHHHhcC
Q 032163 74 GDKSQLATIGLAADEN-PFGVVLGGIIGQALCTTAAVIGGKSLASQI---SEKIVALSGGVLFIVFGIQSFLS 142 (146)
Q Consensus 74 GDKTQlati~LAa~~~-p~~V~~Ga~~al~l~t~laV~~G~~l~~~i---p~~~v~~~agilFl~fG~~~L~~ 142 (146)
|+-|==+++.++.+++ ...+..++++...+++.+.-.....+.+++ ..+.+.++-|++-..+|+-+..+
T Consensus 122 GPg~Ist~i~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s~~i~r~lG~~G~~~~~RimGllL~al~vq~i~~ 194 (203)
T COG2095 122 GPGTIATVIVLSSQYGNSKLAVVLAILLASLLTYLILLSSSRIMRLLGKTGLNALTRIMGLLLAALGVQMILD 194 (203)
T ss_pred CcHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677667777777765 345566666666666666667777776665 45678888898888888876654
Done!