Query 032163
Match_columns 146
No_of_seqs 162 out of 1037
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:52:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 32.3 44 0.0015 18.8 2.8 20 15-34 7-27 (32)
2 2ajj_A NS5A, nonstructural pro 29.9 27 0.00093 19.5 1.6 16 5-20 1-16 (28)
3 3llq_A Aquaporin Z 2; aquapori 21.9 1E+02 0.0034 24.7 4.3 11 61-71 37-47 (256)
4 3o7q_A L-fucose-proton symport 14.8 4.1E+02 0.014 20.4 8.9 31 102-132 305-335 (438)
5 4gc0_A D-xylose-proton symport 13.6 4.2E+02 0.015 20.8 6.2 38 103-140 66-103 (491)
6 1vf5_G Protein PET G; photosyn 12.6 1.4E+02 0.0049 17.5 2.2 26 93-118 5-30 (37)
7 1q90_G Cytochrome B6F complex 11.2 2.7E+02 0.0092 16.3 3.3 25 94-118 6-30 (37)
8 1bh9_B TAFII28; histone fold, 11.1 2.6E+02 0.0089 18.9 3.6 27 112-138 27-53 (89)
9 2jwa_A Receptor tyrosine-prote 8.4 2.3E+02 0.0078 17.0 2.2 27 89-115 9-35 (44)
10 3kcu_A Probable formate transp 8.4 3.5E+02 0.012 21.8 4.0 34 111-144 247-281 (285)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=32.25 E-value=44 Score=18.76 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=14.5
Q ss_pred HHHHHHHHH-HHHHHhhHHhh
Q 032163 15 QVSQHFIIL-TSWFHGLRISK 34 (146)
Q Consensus 15 ~~~~~~~~~-~~~~FG~~~l~ 34 (146)
.++.-++++ +|..||.|..+
T Consensus 7 eviaglvalltflafgfwlfk 27 (32)
T 2lx0_A 7 EVIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555655 89999999876
No 2
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=29.88 E-value=27 Score=19.45 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=12.6
Q ss_pred chhhhHHHHHHHHHHH
Q 032163 5 GGNYIRDAIQQVSQHF 20 (146)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (146)
.||||-|-|++.-..+
T Consensus 1 SgNYiLdLl~~lh~~~ 16 (28)
T 2ajj_A 1 SGNYVLDLIYSLHKQI 16 (28)
T ss_dssp CCCSHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHH
Confidence 3899999999885554
No 3
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=21.89 E-value=1e+02 Score=24.69 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=6.2
Q ss_pred HHHHHHHHHhh
Q 032163 61 FLKAFSITFFG 71 (146)
Q Consensus 61 f~~aF~liFlA 71 (146)
|+-+|+++|+.
T Consensus 37 flGT~lLv~~G 47 (256)
T 3llq_A 37 FFGTFWLVFGG 47 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555566653
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=14.84 E-value=4.1e+02 Score=20.35 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Q 032163 102 ALCTTAAVIGGKSLASQISEKIVALSGGVLF 132 (146)
Q Consensus 102 ~l~t~laV~~G~~l~~~ip~~~v~~~agilF 132 (146)
.++..++.+++.++.+|+..+.+-..+.++.
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIA 335 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3455566677777778888887666555444
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=13.58 E-value=4.2e+02 Score=20.77 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHh
Q 032163 103 LCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 140 (146)
Q Consensus 103 l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L 140 (146)
+...++.+++-.+++++-.|.+-.++.++|.+.++..-
T Consensus 66 ~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a 103 (491)
T 4gc0_A 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSA 103 (491)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 33445666667778888888888888888888776543
No 6
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=12.61 E-value=1.4e+02 Score=17.48 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=18.1
Q ss_pred EeehHHHHHHHHHHHHHHHHHHhhhh
Q 032163 93 VVLGGIIGQALCTTAAVIGGKSLASQ 118 (146)
Q Consensus 93 V~~Ga~~al~l~t~laV~~G~~l~~~ 118 (146)
...|.++|++-+|..+..+-.++.-+
T Consensus 5 lL~GIVlGlipvtl~GLfv~Ay~Qyr 30 (37)
T 1vf5_G 5 LLDGLVLGLVFATLGGLFYAAYQQYK 30 (37)
T ss_dssp ----CHHHHHHHHHHHHTHHHHHHTC
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHh
Confidence 46789999999999888887777543
No 7
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=11.21 E-value=2.7e+02 Score=16.26 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=19.6
Q ss_pred eehHHHHHHHHHHHHHHHHHHhhhh
Q 032163 94 VLGGIIGQALCTTAAVIGGKSLASQ 118 (146)
Q Consensus 94 ~~Ga~~al~l~t~laV~~G~~l~~~ 118 (146)
..|.++|++-+|..+..+-.++.-+
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay~Qyr 30 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAYLQYL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHh
Confidence 4688999999998888877776543
No 8
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=11.09 E-value=2.6e+02 Score=18.85 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=21.0
Q ss_pred HHHhhhhccHHHHHHHHHHHHHHHHHH
Q 032163 112 GKSLASQISEKIVALSGGVLFIVFGIQ 138 (146)
Q Consensus 112 G~~l~~~ip~~~v~~~agilFl~fG~~ 138 (146)
...+...+|.+.+..++|+.+.+.|=.
T Consensus 27 ~~~~~~~v~~~v~i~v~glaKvfVgel 53 (89)
T 1bh9_B 27 QSITGTSVSQNVVIAMSGISKVFVGEV 53 (89)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHHHHH
Confidence 444567788999999999999888743
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=8.44 E-value=2.3e+02 Score=17.01 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=14.3
Q ss_pred CCcEEeehHHHHHHHHHHHHHHHHHHh
Q 032163 89 NPFGVVLGGIIGQALCTTAAVIGGKSL 115 (146)
Q Consensus 89 ~p~~V~~Ga~~al~l~t~laV~~G~~l 115 (146)
+|.+..+|++.|.++.-.++...+-++
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~ 35 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILI 35 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhhe
Confidence 444546666666554444444444444
No 10
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=8.37 E-value=3.5e+02 Score=21.78 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=27.5
Q ss_pred HHHHhh-hhccHHHHHHHHHHHHHHHHHHHhcCCC
Q 032163 111 GGKSLA-SQISEKIVALSGGVLFIVFGIQSFLSPV 144 (146)
Q Consensus 111 ~G~~l~-~~ip~~~v~~~agilFl~fG~~~L~~~~ 144 (146)
.+.++. +.+|.-.=++++|.+|.....|..+..+
T Consensus 247 ~~~~~~~NlipvtlGNiIGG~~fvgl~y~~~~~~~ 281 (285)
T 3kcu_A 247 VMNFITDNLIPVTIGNIIGGGLLVGLTYWVIYLRE 281 (285)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 445564 8889999999999999999999887654
Done!