Query 032163
Match_columns 146
No_of_seqs 162 out of 1037
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 16:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032163.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032163hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 18.7 1.5E+02 0.011 20.8 9.4 74 59-133 25-100 (447)
2 d1y5ic1 f.21.3.1 (C:1-225) Res 11.3 1.5E+02 0.011 20.6 4.7 27 91-117 89-115 (225)
3 d1rh5a_ f.41.1.1 (A:) Preprote 8.6 4E+02 0.029 20.3 7.2 17 99-115 144-160 (422)
4 d1q90g_ f.23.26.1 (G:) PetG su 6.6 1.9E+02 0.014 14.7 3.3 22 94-115 6-27 (30)
5 d1jb0k_ f.30.1.1 (K:) Photosys 5.1 1E+02 0.0074 18.2 0.8 15 102-116 1-15 (58)
6 d1q90m_ f.23.25.1 (M:) PetM su 4.8 2.6E+02 0.019 14.4 2.8 23 94-116 5-27 (34)
7 d1k8ke_ a.148.1.1 (E:) Arp2/3 4.3 2.4E+02 0.018 19.8 2.6 28 6-41 125-152 (174)
8 d2bl8a1 a.29.8.2 (A:4-103) Ent 4.1 68 0.005 21.0 -0.6 12 68-79 89-100 (100)
9 d1jr8a_ a.24.15.1 (A:) Thiol o 4.1 2.2E+02 0.016 17.5 2.0 25 27-51 13-37 (105)
10 d2axtj1 f.23.32.1 (J:7-40) Pho 3.6 3.2E+02 0.024 14.2 2.1 18 94-111 6-23 (34)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=18.67 E-value=1.5e+02 Score=20.77 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHh-cccCCcEEeehHH-HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 032163 59 PIFLKAFSITFFGEWGDKSQLATIGLA-ADENPFGVVLGGI-IGQALCTTAAVIGGKSLASQISEKIVALSGGVLFI 133 (146)
Q Consensus 59 ~~f~~aF~liFlAElGDKTQlati~LA-a~~~p~~V~~Ga~-~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl 133 (146)
..+...+. .+.....|++-+..+.=. .+.+.-..-+|-. ....+...++...+-.+.+|...|.+-.++.++..
T Consensus 25 ~i~~~~~~-~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~ 100 (447)
T d1pw4a_ 25 QIFLGIFF-GYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 100 (447)
T ss_dssp HHHHHHHH-HHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 44444443 344555666544433211 2222222333443 23444455666677777889988887666655443
No 2
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=11.27 E-value=1.5e+02 Score=20.63 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=18.5
Q ss_pred cEEeehHHHHHHHHHHHHHHHHHHhhh
Q 032163 91 FGVVLGGIIGQALCTTAAVIGGKSLAS 117 (146)
Q Consensus 91 ~~V~~Ga~~al~l~t~laV~~G~~l~~ 117 (146)
....+|.+.|.++..++..+.-|-+.+
T Consensus 89 ~~~~~g~i~g~l~liG~~~ll~RR~~~ 115 (225)
T d1y5ic1 89 MAMFAGGASGVLCLIGGVLLLKRRLFS 115 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677888887777777776665544
No 3
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.65 E-value=4e+02 Score=20.33 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 032163 99 IGQALCTTAAVIGGKSL 115 (146)
Q Consensus 99 ~al~l~t~laV~~G~~l 115 (146)
+.+...+.+.+++|..+
T Consensus 144 ~~L~aGt~~lmwL~E~I 160 (422)
T d1rh5a_ 144 IQIAFGSIILIYLDEIV 160 (422)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444455555444
No 4
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.58 E-value=1.9e+02 Score=14.71 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=16.0
Q ss_pred eehHHHHHHHHHHHHHHHHHHh
Q 032163 94 VLGGIIGQALCTTAAVIGGKSL 115 (146)
Q Consensus 94 ~~Ga~~al~l~t~laV~~G~~l 115 (146)
..|.++|++-.|..+..+..++
T Consensus 6 l~GivlGlipiTl~Glfv~Ayl 27 (30)
T d1q90g_ 6 LCGIVLGLVPVTIAGLFVTAYL 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhhHHHHHHHHHHHHHH
Confidence 4578888888887777766554
No 5
>d1jb0k_ f.30.1.1 (K:) Photosystem I reaction center subunit X, PsaK {Synechococcus elongatus [TaxId: 32046]}
Probab=5.11 E-value=1e+02 Score=18.22 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhh
Q 032163 102 ALCTTAAVIGGKSLA 116 (146)
Q Consensus 102 ~l~t~laV~~G~~l~ 116 (146)
++|+++++.+|++-=
T Consensus 1 I~cN~lai~ig~~tI 15 (58)
T d1jb0k_ 1 ILCNLFAIALGRYAI 15 (58)
T ss_dssp CHHHHHHHHHHHC-C
T ss_pred CeehhHHHHHHHHHH
Confidence 368999999998753
No 6
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.81 E-value=2.6e+02 Score=14.38 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=15.9
Q ss_pred eehHHHHHHHHHHHHHHHHHHhh
Q 032163 94 VLGGIIGQALCTTAAVIGGKSLA 116 (146)
Q Consensus 94 ~~Ga~~al~l~t~laV~~G~~l~ 116 (146)
+.|..+-++-+|.++..+|-.+.
T Consensus 5 iagta~tmig~tl~glaigfvll 27 (34)
T d1q90m_ 5 IAGTALTMVGMTLVGLAIGFVLL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHhhe
Confidence 35666777777777777776654
No 7
>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.33 E-value=2.4e+02 Score=19.81 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=22.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhHHhhhhccCcC
Q 032163 6 GNYIRDAIQQVSQHFIILTSWFHGLRISKCFFSFQA 41 (146)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~FG~~~l~~~~~~~~ 41 (146)
...+|..++|.-||+ |.|++..-|..++
T Consensus 125 ~e~lR~Yl~Q~RqEl--------~~RL~ervy~~~~ 152 (174)
T d1k8ke_ 125 DEVMRAYLQQLRQET--------GLRLCEKVFDPQN 152 (174)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHBCSSS
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHcCCCC
Confidence 356899999999999 7898888885433
No 8
>d2bl8a1 a.29.8.2 (A:4-103) Enterocine A immunity protein, EntA-Im {Enterococcus faecium [TaxId: 1352]}
Probab=4.07 E-value=68 Score=21.01 Aligned_cols=12 Identities=42% Similarity=0.814 Sum_probs=7.2
Q ss_pred HHhhcccchHHH
Q 032163 68 TFFGEWGDKSQL 79 (146)
Q Consensus 68 iFlAElGDKTQl 79 (146)
+.+|-++||+|+
T Consensus 89 vY~s~~~dksQF 100 (100)
T d2bl8a1 89 LYRADYGDKSQF 100 (100)
T ss_dssp CCSSSTTCGGGC
T ss_pred eeecCCchhccC
Confidence 345566777774
No 9
>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.06 E-value=2.2e+02 Score=17.54 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=17.5
Q ss_pred HHhhHHhhhhccCcCchHHhhcccc
Q 032163 27 FHGLRISKCFFSFQADDELKKQRRP 51 (146)
Q Consensus 27 ~FG~~~l~~~~~~~~~~~~~~~~~~ 51 (146)
-+-++++-..+|+++++++++..++
T Consensus 13 W~~lHtia~~yp~~pt~~~k~~~~~ 37 (105)
T d1jr8a_ 13 WKYFHTLLARFPDEPTPEEREKLHT 37 (105)
T ss_dssp HHHHHHHHHTSCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 3446677788999888777766543
No 10
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.62 E-value=3.2e+02 Score=14.16 Aligned_cols=18 Identities=6% Similarity=0.206 Sum_probs=11.0
Q ss_pred eehHHHHHHHHHHHHHHH
Q 032163 94 VLGGIIGQALCTTAAVIG 111 (146)
Q Consensus 94 ~~Ga~~al~l~t~laV~~ 111 (146)
++|.+.|+.+.+.+++.+
T Consensus 6 lv~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFF 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EeeehhhhhhHhheeeee
Confidence 346666666666666553
Done!