Query 032165
Match_columns 146
No_of_seqs 135 out of 1030
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 10:28:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0590 CumB Cytosine/adenosin 100.0 3.3E-38 7.2E-43 229.4 14.3 125 8-143 4-129 (152)
2 PRK10860 tRNA-specific adenosi 100.0 6.3E-38 1.4E-42 231.9 13.9 116 12-136 13-128 (172)
3 cd01285 nucleoside_deaminase N 100.0 2.3E-34 5E-39 198.6 12.9 106 16-130 1-107 (109)
4 TIGR02571 ComEB ComE operon pr 100.0 5.8E-33 1.3E-37 201.5 12.1 103 9-123 3-120 (151)
5 PHA02588 cd deoxycytidylate de 100.0 6.9E-32 1.5E-36 199.0 13.6 101 11-123 2-134 (168)
6 cd01286 deoxycytidylate_deamin 100.0 8.5E-32 1.8E-36 191.5 13.1 101 12-124 1-122 (131)
7 PF00383 dCMP_cyt_deam_1: Cyti 100.0 5.6E-31 1.2E-35 178.8 11.3 100 10-119 2-102 (102)
8 cd01284 Riboflavin_deaminase-r 100.0 4.2E-31 9E-36 184.0 10.6 103 16-135 1-112 (115)
9 KOG1018 Cytosine deaminase FCY 100.0 8.1E-30 1.8E-34 187.6 12.0 122 5-135 4-130 (169)
10 cd00786 cytidine_deaminase-lik 100.0 8.1E-30 1.7E-34 172.3 10.8 92 16-119 1-95 (96)
11 PRK10786 ribD bifunctional dia 100.0 2.2E-28 4.8E-33 199.7 12.3 106 11-134 2-115 (367)
12 PLN02807 diaminohydroxyphospho 100.0 3.4E-28 7.3E-33 199.1 12.7 109 8-134 28-144 (380)
13 COG0117 RibD Pyrimidine deamin 99.9 1.1E-27 2.4E-32 170.2 10.2 97 10-124 4-108 (146)
14 TIGR00326 eubact_ribD riboflav 99.9 9.9E-28 2.2E-32 194.4 10.5 102 16-135 1-110 (344)
15 COG2131 ComEB Deoxycytidylate 99.9 1.7E-26 3.7E-31 167.8 10.7 103 10-124 7-131 (164)
16 KOG2771 Subunit of tRNA-specif 99.9 9E-23 1.9E-27 161.9 10.0 128 11-143 166-324 (344)
17 KOG3127 Deoxycytidylate deamin 99.9 1.2E-21 2.6E-26 147.3 7.5 102 6-121 61-183 (230)
18 cd01283 cytidine_deaminase Cyt 99.8 3E-20 6.4E-25 128.5 10.7 95 17-123 2-103 (112)
19 TIGR01354 cyt_deam_tetra cytid 99.5 1.4E-13 3E-18 97.4 10.9 87 14-111 2-94 (127)
20 PRK06848 hypothetical protein; 99.3 4.2E-11 9E-16 85.9 11.8 93 10-113 5-110 (139)
21 PF14439 Bd3614-deam: Bd3614-l 99.3 2.7E-11 5.9E-16 83.4 9.0 96 31-130 7-122 (136)
22 COG0295 Cdd Cytidine deaminase 99.3 7.7E-11 1.7E-15 83.6 10.5 95 14-119 7-108 (134)
23 PRK12411 cytidine deaminase; P 99.2 2.3E-10 5E-15 81.4 11.7 88 13-111 4-97 (132)
24 PRK08298 cytidine deaminase; V 99.2 1.5E-10 3.2E-15 82.7 10.7 90 12-113 4-102 (136)
25 PRK05578 cytidine deaminase; V 99.2 3.2E-10 6.9E-15 80.6 11.0 89 12-111 3-97 (131)
26 TIGR01355 cyt_deam_dimer cytid 99.1 1.3E-09 2.7E-14 86.3 9.8 88 11-111 21-112 (283)
27 KOG0833 Cytidine deaminase [Nu 98.9 5.7E-08 1.2E-12 71.3 11.3 94 12-116 21-121 (173)
28 PLN02402 cytidine deaminase 98.9 1.8E-08 3.9E-13 80.3 9.2 87 12-111 25-115 (303)
29 PRK09027 cytidine deaminase; P 98.8 8.7E-08 1.9E-12 76.4 10.2 98 11-117 188-291 (295)
30 PLN02182 cytidine deaminase 98.7 1.3E-07 2.8E-12 76.4 10.3 86 16-112 49-144 (339)
31 PRK09027 cytidine deaminase; P 98.7 3.6E-07 7.8E-12 72.9 11.5 78 21-111 59-140 (295)
32 TIGR01355 cyt_deam_dimer cytid 98.5 1.2E-06 2.5E-11 69.6 9.0 92 12-113 174-274 (283)
33 PRK14719 bifunctional RNAse/5- 97.9 1.9E-05 4.1E-10 64.9 5.9 38 88-126 43-80 (360)
34 PLN02402 cytidine deaminase 97.8 7.7E-05 1.7E-09 59.7 7.2 61 12-73 192-254 (303)
35 PF14437 MafB19-deam: MafB19-l 97.5 0.0014 3.1E-08 47.2 9.1 52 59-120 80-135 (146)
36 PF08211 dCMP_cyt_deam_2: Cyti 97.1 0.0017 3.7E-08 45.7 5.9 62 11-73 32-95 (124)
37 PF14431 YwqJ-deaminase: YwqJ- 95.8 0.064 1.4E-06 37.6 7.3 48 58-112 65-125 (125)
38 PF14440 XOO_2897-deam: Xantho 94.4 0.023 5E-07 39.7 1.6 56 57-122 43-102 (118)
39 PF14424 Toxin-deaminase: The 94.1 0.14 3.1E-06 36.4 5.1 46 58-111 72-119 (133)
40 PF08210 APOBEC_N: APOBEC-like 92.4 0.26 5.6E-06 37.0 4.6 71 31-110 23-99 (188)
41 PF14441 OTT_1508_deam: OTT_15 88.1 1.7 3.6E-05 30.9 5.4 45 55-111 63-107 (142)
42 PF14421 LmjF365940-deam: A di 76.0 5.9 0.00013 29.8 4.4 42 31-72 36-87 (193)
43 PF13540 RCC1_2: Regulator of 70.7 9.9 0.00021 19.5 3.4 19 33-51 9-27 (30)
44 PRK09732 hypothetical protein; 62.2 53 0.0012 23.2 8.1 61 4-73 4-65 (134)
45 PF02132 RecR: RecR protein; 62.0 18 0.00039 20.1 3.5 20 86-105 18-37 (41)
46 COG3193 GlcG Uncharacterized p 61.1 59 0.0013 23.4 7.4 61 4-73 5-66 (141)
47 PF14428 SCP1201-deam: SCP1.20 55.3 13 0.00027 26.5 2.6 48 58-118 67-121 (135)
48 PF08098 ATX_III: Anemonia sul 54.6 4.3 9.3E-05 20.4 0.1 9 96-104 2-10 (27)
49 PRK09710 lar restriction allev 52.5 2.8 6E-05 26.1 -1.0 21 94-114 3-23 (64)
50 PLN02182 cytidine deaminase 51.9 59 0.0013 26.8 6.2 60 12-72 201-262 (339)
51 PF05507 MAGP: Microfibril-ass 51.5 18 0.00038 25.7 2.7 28 91-118 91-118 (137)
52 PF14427 Pput2613-deam: Pput_2 49.5 19 0.00041 24.9 2.6 50 59-121 48-102 (118)
53 PF05582 Peptidase_U57: YabG p 49.1 1.4E+02 0.003 24.1 8.6 97 11-124 113-239 (287)
54 PF08903 DUF1846: Domain of un 47.9 64 0.0014 27.7 5.9 86 17-113 344-477 (491)
55 PRK00611 putative disulfide ox 47.5 8.6 0.00019 27.4 0.7 10 96-105 32-41 (135)
56 PHA03005 sulfhydryl oxidase; P 47.1 9.8 0.00021 25.4 0.9 16 93-109 37-52 (96)
57 PRK04307 putative disulfide ox 45.8 8.5 0.00018 29.7 0.5 11 95-105 48-58 (218)
58 PRK13663 hypothetical protein; 44.6 63 0.0014 27.7 5.4 53 12-75 340-392 (493)
59 COG4827 Predicted transporter 42.8 27 0.00059 26.9 2.8 24 87-110 101-124 (239)
60 TIGR00159 conserved hypothetic 41.0 28 0.0006 26.8 2.7 34 35-68 127-165 (211)
61 PRK00881 purH bifunctional pho 40.8 2.5E+02 0.0054 24.6 11.1 85 12-117 397-482 (513)
62 PRK03113 putative disulfide ox 38.7 14 0.00031 26.4 0.7 10 96-105 33-42 (139)
63 COG2101 SPT15 TATA-box binding 38.5 88 0.0019 23.4 4.9 42 31-80 51-92 (185)
64 PF02457 DisA_N: DisA bacteria 37.6 21 0.00045 24.9 1.4 17 34-50 56-72 (122)
65 TIGR02855 spore_yabG sporulati 36.6 2.3E+02 0.0049 22.8 9.0 97 11-124 112-238 (283)
66 PF03928 DUF336: Domain of unk 35.1 1.5E+02 0.0033 20.4 5.9 52 13-73 9-61 (132)
67 KOG1682 Enoyl-CoA isomerase [L 34.6 57 0.0012 25.3 3.4 36 29-64 72-110 (287)
68 PF05528 Coronavirus_5: Corona 34.2 14 0.00031 23.4 0.2 20 90-109 26-49 (82)
69 PF10673 DUF2487: Protein of u 33.7 71 0.0015 22.9 3.7 42 102-143 75-117 (142)
70 cd06222 RnaseH RNase H (RNase 33.6 1.2E+02 0.0027 19.0 6.2 43 31-75 14-57 (130)
71 KOG2771 Subunit of tRNA-specif 31.2 16 0.00036 30.0 0.1 21 98-118 211-231 (344)
72 COG1624 Uncharacterized conser 30.0 50 0.0011 26.0 2.6 34 35-68 174-213 (247)
73 TIGR00355 purH phosphoribosyla 30.0 1.8E+02 0.0038 25.5 6.0 65 37-117 415-480 (511)
74 PF04805 Pox_E10: E10-like pro 30.0 40 0.00086 21.2 1.6 14 96-109 14-27 (70)
75 PRK01749 disulfide bond format 28.3 26 0.00057 25.8 0.7 11 95-105 36-46 (176)
76 PRK02110 disulfide bond format 27.7 28 0.00061 25.5 0.8 10 96-105 37-46 (169)
77 cd03029 GRX_hybridPRX5 Glutare 27.5 53 0.0012 19.7 1.9 26 91-117 3-31 (72)
78 PLN00062 TATA-box-binding prot 27.5 2.5E+02 0.0053 20.9 5.8 39 34-80 48-86 (179)
79 cd04518 TBP_archaea archaeal T 27.5 2E+02 0.0042 21.3 5.2 41 33-81 47-87 (174)
80 PF02600 DsbB: Disulfide bond 27.2 20 0.00043 25.5 -0.1 11 95-105 29-39 (156)
81 PRK00203 rnhA ribonuclease H; 26.8 2.3E+02 0.0049 19.9 5.6 35 60-105 44-78 (150)
82 PRK04388 disulfide bond format 26.5 30 0.00065 25.4 0.7 11 95-105 33-43 (172)
83 COG0353 RecR Recombinational D 23.6 31 0.00066 26.3 0.3 20 86-105 55-74 (198)
84 cd04516 TBP_eukaryotes eukaryo 23.1 3.1E+02 0.0068 20.2 5.7 41 33-81 47-87 (174)
85 PF14354 Lar_restr_allev: Rest 23.0 17 0.00037 21.5 -0.9 13 96-108 2-14 (61)
86 PRK00075 cbiD cobalt-precorrin 22.6 2.1E+02 0.0046 23.8 5.1 23 28-50 334-357 (361)
87 COG1495 DsbB Disulfide bond fo 22.6 40 0.00086 24.8 0.7 10 96-105 38-47 (170)
88 cd04672 Nudix_Hydrolase_14 Mem 21.3 1.3E+02 0.0027 20.0 3.0 43 31-73 2-50 (123)
89 KOG1774 Small nuclear ribonucl 21.0 1E+02 0.0022 20.1 2.3 32 12-43 46-79 (88)
No 1
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-38 Score=229.36 Aligned_cols=125 Identities=42% Similarity=0.632 Sum_probs=114.8
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhc
Q 032165 8 WSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (146)
Q Consensus 8 ~~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (146)
...++..||++|+++|+++.+.++.|||||||+ +|+||+.|+|...+..+|+.|||+.||+++.+.+. .+
T Consensus 4 ~~~~~~~~m~~al~~A~~a~~~ge~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~---------~~ 74 (152)
T COG0590 4 LSEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLG---------NY 74 (152)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhC---------CC
Confidence 456788999999999999988889999999999 99999999999999999999999999999998853 36
Q ss_pred cCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCccccceeeecccccccCCC
Q 032165 87 KFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNR 143 (146)
Q Consensus 87 ~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~~~~~~ln~ 143 (146)
.+.+||||+|+|||+||++||+|+||+||||+.++++.|+.++.++++.. ..+||
T Consensus 75 ~l~~~tlyvT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~--~~~~~ 129 (152)
T COG0590 75 RLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKD--PRLNH 129 (152)
T ss_pred CcCCcEEEEecCCHHHHHHHHHHhCCCeEEEecCCCCcCccCcccccccC--CCCCc
Confidence 78999999999999999999999999999999999999999999999885 55553
No 2
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=100.00 E-value=6.3e-38 Score=231.88 Aligned_cols=116 Identities=34% Similarity=0.512 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCc
Q 032165 12 TLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKC 91 (146)
Q Consensus 12 ~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 91 (146)
+++||++|+++|+++...+++|||||||++|+||++|+|+.....+++.|||++||+++.+++. .+.+.++
T Consensus 13 ~~~~m~~A~~~A~~a~~~g~~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~---------~~~l~g~ 83 (172)
T PRK10860 13 HEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQ---------NYRLLDA 83 (172)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcC---------CCCcCCc
Confidence 6789999999999999888999999999999999999999888899999999999999987643 3457899
Q ss_pred EEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCccccceeeeccc
Q 032165 92 CLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLS 136 (146)
Q Consensus 92 ~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~~ 136 (146)
+||+|+|||+||+++|+|+||+||||+..+++.|+.++.+.++..
T Consensus 84 tlY~TlEPC~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~ 128 (172)
T PRK10860 84 TLYVTLEPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHH 128 (172)
T ss_pred EEEeeCCCcHHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhc
Confidence 999999999999999999999999999999999999888877663
No 3
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=100.00 E-value=2.3e-34 Score=198.62 Aligned_cols=106 Identities=47% Similarity=0.707 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEEeeC-CeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEE
Q 032165 16 MDLAIQQAKLALDSLEVPVGCVILED-GKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLY 94 (146)
Q Consensus 16 m~~a~~~A~~a~~~~~~pvGavIv~~-g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly 94 (146)
|++|+++|+++...+++||||+||++ |+||+.|+|.+.++.+++.|||++||+++.+++. .+.+.+++||
T Consensus 1 m~~al~~a~~~~~~~~~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~---------~~~~~~~~ly 71 (109)
T cd01285 1 MRLAIELARKALAEGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLG---------SYLLSGCTLY 71 (109)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhC---------CCccCCeEEE
Confidence 68999999999888999999999985 9999999999998899999999999999988743 3468999999
Q ss_pred EcCCChHHHHHHHHHhCCCEEEEeeeCCCCccccce
Q 032165 95 VTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSI 130 (146)
Q Consensus 95 ~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~ 130 (146)
+|+|||+||+++|+|+||+||||+.+++..|+.+..
T Consensus 72 ~t~EPC~mC~~ai~~~gi~~Vvy~~~~~~~g~~~~~ 107 (109)
T cd01285 72 TTLEPCPMCAGALLWARIKRVVYGASDPKLGGIGFL 107 (109)
T ss_pred EeCCChHHHHHHHHHHCCCEEEEEecCCcccccccC
Confidence 999999999999999999999999999998887754
No 4
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=100.00 E-value=5.8e-33 Score=201.51 Aligned_cols=103 Identities=27% Similarity=0.361 Sum_probs=90.1
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCC---------------CCCccHHHHHHHHHHHH
Q 032165 9 SPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETR---------------NATRHAEMEAIDVLLDQ 73 (146)
Q Consensus 9 ~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~---------------~~~~HAE~~Ai~~~~~~ 73 (146)
++++++||++|+++|+++ ..++.|||||||++|+||++|+|..+++. +++.|||++||.++.+.
T Consensus 3 ~~~d~~fM~~A~~~A~rs-~~~~~~VGAVIV~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~~~ 81 (151)
T TIGR02571 3 IKWDQYFMAQSHLLALRS-TCTRLSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAKF 81 (151)
T ss_pred CcHHHHHHHHHHHHHHhc-CCCCCCEEEEEEECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHHhc
Confidence 356889999999999998 56799999999999999999999987654 47899999999998754
Q ss_pred HhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCC
Q 032165 74 WQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEK 123 (146)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~ 123 (146)
+..+.+++||||+|||+||+++|+++||++|||+..++.
T Consensus 82 -----------~~~l~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~ 120 (151)
T TIGR02571 82 -----------GVSTEGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHN 120 (151)
T ss_pred -----------CCCcCCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCC
Confidence 235789999999999999999999999999999975443
No 5
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=99.98 E-value=6.9e-32 Score=199.03 Aligned_cols=101 Identities=27% Similarity=0.441 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCC--------------------------------CCC
Q 032165 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTET--------------------------------RNA 58 (146)
Q Consensus 11 ~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~--------------------------------~~~ 58 (146)
+|.+||++|+++|+++. .++.|||||||++|+||++|+|+.+++ .++
T Consensus 2 ~d~~fM~~A~~~A~~s~-~~~~~VGAVIV~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PHA02588 2 KDSTYLQIAYLVSQESK-CVSWKVGAVIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKN 80 (168)
T ss_pred CHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCCC
Confidence 46789999999999995 578999999999999999999988754 357
Q ss_pred CccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCC
Q 032165 59 TRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEK 123 (146)
Q Consensus 59 ~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~ 123 (146)
+.|||++||.++.++ +..+.+++||||+|||+||+.+|+++||+||||+..++.
T Consensus 81 ~~HAE~nAi~~a~~~-----------~~~~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~ 134 (168)
T PHA02588 81 EIHAELNAILFAARN-----------GISIEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDR 134 (168)
T ss_pred CccHHHHHHHHHhhc-----------CCCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCC
Confidence 889999999998765 245789999999999999999999999999999987543
No 6
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.98 E-value=8.5e-32 Score=191.45 Aligned_cols=101 Identities=32% Similarity=0.388 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcC---------------------CCCCCccHHHHHHHHH
Q 032165 12 TLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTE---------------------TRNATRHAEMEAIDVL 70 (146)
Q Consensus 12 ~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~---------------------~~~~~~HAE~~Ai~~~ 70 (146)
|+.||++|+++|+++. .+++|||||||++|+||++|+|.+++ ..+++.|||++||.++
T Consensus 1 d~~~m~~A~~~A~~s~-~~~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a 79 (131)
T cd01286 1 DEYFMAIARLAALRST-CPRRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQA 79 (131)
T ss_pred CHHHHHHHHHHHHHcC-CCCCCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHH
Confidence 3579999999999985 47999999999999999999998863 4579999999999998
Q ss_pred HHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCC
Q 032165 71 LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKF 124 (146)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~ 124 (146)
.++ +..+.+++||||+|||+||+.+|+++||++|||+.+.+..
T Consensus 80 ~~~-----------~~~~~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~~ 122 (131)
T cd01286 80 ARH-----------GVSLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDDD 122 (131)
T ss_pred hHc-----------CCCcCCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCcc
Confidence 765 2457899999999999999999999999999999877654
No 7
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.97 E-value=5.6e-31 Score=178.83 Aligned_cols=100 Identities=44% Similarity=0.641 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccC
Q 032165 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (146)
Q Consensus 10 ~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (146)
++++.||++|+++|+++...+++|||||||+ +|++|+.|+|....+.+++.|||++||.++.++ . ...+
T Consensus 2 ~~~~~~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~-~---------~~~~ 71 (102)
T PF00383_consen 2 EWDEEFMRIAIELAKRSRPCGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARN-G---------GSSL 71 (102)
T ss_dssp CHHHHHHHHHHHHHHTHBTTTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHT-T---------SSGE
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhh-c---------cccc
Confidence 4689999999999999987789999999999 899999999999888889999999999999876 2 1346
Q ss_pred CCcEEEEcCCChHHHHHHHHHhCCCEEEEee
Q 032165 89 SKCCLYVTCEPCIMCAAALSILGIKEVYYGC 119 (146)
Q Consensus 89 ~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~ 119 (146)
.+++||+|+|||.||+++|+++||+||||++
T Consensus 72 ~~~~lyvt~ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 72 KGCTLYVTLEPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp TTEEEEEEE--BHHHHHHHHHHTSSEEEEEE
T ss_pred cCcccccCCCCHHHHHHHHHHHCcCeEEEeC
Confidence 7999999999999999999999999999984
No 8
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.97 E-value=4.2e-31 Score=183.95 Aligned_cols=103 Identities=33% Similarity=0.473 Sum_probs=90.9
Q ss_pred HHHHHHHHHHh--hcCCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcE
Q 032165 16 MDLAIQQAKLA--LDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCC 92 (146)
Q Consensus 16 m~~a~~~A~~a--~~~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (146)
|++|+++|+++ ...+++|||||||+ +|+||+.|+|... ++.|||++||+++.++ .+.+++
T Consensus 1 m~~al~~A~~~~~~~~~~~pvGaviv~~~g~iv~~g~n~~~----~~~HAE~~ai~~a~~~-------------~l~g~t 63 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKA----GGPHAEVNALASAGEK-------------LARGAT 63 (115)
T ss_pred CHHHHHHHHhcccccCCCCCEEEEEEeCCCeEEEEecCCCC----CcccHHHHHHHHHhhc-------------CCCCeE
Confidence 78999999999 67789999999997 4999999999853 8999999999998764 378999
Q ss_pred EEEcCCCh------HHHHHHHHHhCCCEEEEeeeCCCCccccceeeecc
Q 032165 93 LYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHL 135 (146)
Q Consensus 93 ly~t~ePC------~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~ 135 (146)
||+|+||| +||+++|+|+||+||||+..+|..+..++.+.++.
T Consensus 64 ly~TlEPC~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~~~~~g~~~l~ 112 (115)
T cd01284 64 LYVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPLVAGKGAERLR 112 (115)
T ss_pred EEEeCCCCCCCCCchHHHHHHHHHCcCEEEEEecCCCcccccHHHHHHH
Confidence 99999999 89999999999999999999998776666555543
No 9
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=99.97 E-value=8.1e-30 Score=187.56 Aligned_cols=122 Identities=46% Similarity=0.719 Sum_probs=109.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHH---HHHHHhhCCC
Q 032165 5 GEEWSPDTLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDV---LLDQWQKNGL 79 (146)
Q Consensus 5 ~~~~~~~~~~~m~~a~~~A~~a~~~~-~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~---~~~~~~~~~~ 79 (146)
....++.+.+||+.|+++|+++.+.+ +.|||||+|+ +|+|++.|+|.+++..+++.|||+.+|++ ...+..
T Consensus 4 ~~~~~~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~---- 79 (169)
T KOG1018|consen 4 IRELSDHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLR---- 79 (169)
T ss_pred chhcccccHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhcC----
Confidence 44556778899999999999999999 9999999999 99999999999999999999999999998 443322
Q ss_pred ChhhhhccCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCccccceeeecc
Q 032165 80 SQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHL 135 (146)
Q Consensus 80 ~~~~~~~~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~ 135 (146)
...++++++|||.|||+||++||.|+||++||||..++.+|+.+...+...
T Consensus 80 -----~~~ls~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~ 130 (169)
T KOG1018|consen 80 -----TIDLSETTLYVTCEPCPMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNK 130 (169)
T ss_pred -----ceeccCCEEEEEecccHHHHHHHHHcCCCEEEEecccccccccceeeeehh
Confidence 367899999999999999999999999999999999999999987776543
No 10
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.97 E-value=8.1e-30 Score=172.26 Aligned_cols=92 Identities=27% Similarity=0.352 Sum_probs=84.2
Q ss_pred HHHHHHHHHHh-hcCCCCcEEEEEeeC--CeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcE
Q 032165 16 MDLAIQQAKLA-LDSLEVPVGCVILED--GKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCC 92 (146)
Q Consensus 16 m~~a~~~A~~a-~~~~~~pvGavIv~~--g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (146)
|+.|+++|+++ ...+++||||+||++ |++++.|+|......+++.|||++||+++.+. ..+.+++
T Consensus 1 m~~a~~~a~~a~~~~~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~------------~~~~~~t 68 (96)
T cd00786 1 MTEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSE------------GDTKGQM 68 (96)
T ss_pred CHHHHHHHHhccCCCCCCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHHc------------CCCCceE
Confidence 78999999998 567899999999975 99999999999988999999999999998765 2378999
Q ss_pred EEEcCCChHHHHHHHHHhCCCEEEEee
Q 032165 93 LYVTCEPCIMCAAALSILGIKEVYYGC 119 (146)
Q Consensus 93 ly~t~ePC~mC~~al~~sgi~~Vvy~~ 119 (146)
||+|+|||.||+++|+|+||++|||+.
T Consensus 69 ly~tlePC~mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 69 LYVALSPCGACAQLIIELGIKDVIVVL 95 (96)
T ss_pred EEEECCChHHHHHHHHHhCCCCEEEee
Confidence 999999999999999999999999974
No 11
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=99.96 E-value=2.2e-28 Score=199.73 Aligned_cols=106 Identities=26% Similarity=0.391 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHHhh--cCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccC
Q 032165 11 DTLAFMDLAIQQAKLAL--DSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (146)
Q Consensus 11 ~~~~~m~~a~~~A~~a~--~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (146)
.+++||++|+++|+++. ..+++|||||||++|+||++|+|.. .+..|||++||+++.++ +
T Consensus 2 ~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~g~~HAE~~ai~~a~~~--------------~ 63 (367)
T PRK10786 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQR----AGEPHAEVHALRMAGEK--------------A 63 (367)
T ss_pred CHHHHHHHHHHHHHhcCcCCCCCCCEEEEEEeCCEEEEEEeCCC----CCCCCHHHHHHHHHhhh--------------c
Confidence 36789999999999986 4579999999999999999999974 35689999999998754 5
Q ss_pred CCcEEEEcCCCh------HHHHHHHHHhCCCEEEEeeeCCCCccccceeeec
Q 032165 89 SKCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134 (146)
Q Consensus 89 ~~~~ly~t~ePC------~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~ 134 (146)
.|+|||||+||| +||+.+|+++||+||||+..+|+.+..++...++
T Consensus 64 ~g~tlyvTlEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~~~g~~~~~l 115 (367)
T PRK10786 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRL 115 (367)
T ss_pred CCCEEEEecCCccCCCCChHHHHHHHHhCCCEEEEecCCCCcccCchHHHHH
Confidence 799999999999 8999999999999999999999887666444333
No 12
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=99.95 E-value=3.4e-28 Score=199.10 Aligned_cols=109 Identities=27% Similarity=0.355 Sum_probs=92.7
Q ss_pred CChhHHHHHHHHHHHHHHhhc--CCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhh
Q 032165 8 WSPDTLAFMDLAIQQAKLALD--SLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIA 85 (146)
Q Consensus 8 ~~~~~~~~m~~a~~~A~~a~~--~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~ 85 (146)
.+..+++||++|+++|+++.. .++++||||||++|+||+.|+|.. .+..|||++||+++.++
T Consensus 28 ~~~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV~~g~Ii~~g~n~~----~g~~HAEi~Ai~~a~~~------------ 91 (380)
T PLN02807 28 AGDDDSFYMRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPK----AGQPHAEVFALRDAGDL------------ 91 (380)
T ss_pred CCchHHHHHHHHHHHHHhhcccCCCCCCEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHHhhhh------------
Confidence 345677899999999999864 357899999999999999999974 35689999999998654
Q ss_pred ccCCCcEEEEcCCCh------HHHHHHHHHhCCCEEEEeeeCCCCccccceeeec
Q 032165 86 EKFSKCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134 (146)
Q Consensus 86 ~~~~~~~ly~t~ePC------~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~ 134 (146)
+.++|||+|+||| +||+.+|+++||+||||+..+|..+..+....++
T Consensus 92 --~~g~tlyvTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l 144 (380)
T PLN02807 92 --AENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERL 144 (380)
T ss_pred --cCCcEEEEEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccchHHHHH
Confidence 5799999999999 8999999999999999999988876555444443
No 13
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=99.95 E-value=1.1e-27 Score=170.21 Aligned_cols=97 Identities=29% Similarity=0.438 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHHHhh--cCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhcc
Q 032165 10 PDTLAFMDLAIQQAKLAL--DSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (146)
Q Consensus 10 ~~~~~~m~~a~~~A~~a~--~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (146)
..++.||++|+++|++.. +.+|++||||||++|+||+.|+.. .-+..|||..||+++.. .
T Consensus 4 ~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~----~aG~pHAEv~Al~~ag~--------------~ 65 (146)
T COG0117 4 ELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHE----KAGGPHAEVCALRMAGE--------------A 65 (146)
T ss_pred hHHHHHHHHHHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecC----CCCCCcHHHHHHHHcCc--------------c
Confidence 458899999999999954 468999999999999999999997 45788999999998843 4
Q ss_pred CCCcEEEEcCCCh------HHHHHHHHHhCCCEEEEeeeCCCC
Q 032165 88 FSKCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKF 124 (146)
Q Consensus 88 ~~~~~ly~t~ePC------~mC~~al~~sgi~~Vvy~~~~~~~ 124 (146)
..|+|+|+|+||| ++|+.+|+.+||+|||++..||..
T Consensus 66 a~Gat~yVTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp 108 (146)
T COG0117 66 ARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNP 108 (146)
T ss_pred cCCCEEEEEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCc
Confidence 7899999999999 699999999999999999988873
No 14
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.95 E-value=9.9e-28 Score=194.42 Aligned_cols=102 Identities=28% Similarity=0.395 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhhc--CCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEE
Q 032165 16 MDLAIQQAKLALD--SLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCL 93 (146)
Q Consensus 16 m~~a~~~A~~a~~--~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (146)
|++|+++|+++.. .+++|||||||++|+||++|+|. ..++.|||++||+++.++ +.|+||
T Consensus 1 m~~a~~~a~~~~~~~~~~~~vGaviv~~~~ii~~g~n~----~~~~~HAE~~ai~~a~~~--------------~~g~tl 62 (344)
T TIGR00326 1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQ----KAGEPHAEVHALRQAGEN--------------AKGATA 62 (344)
T ss_pred CHHHHHHHHhcCCCCCCCCCEEEEEEeCCEEEEEeeCC----CCCCCCHHHHHHHHhccc--------------cCCcEE
Confidence 7899999999875 46899999999999999999998 357899999999998654 479999
Q ss_pred EEcCCCh------HHHHHHHHHhCCCEEEEeeeCCCCccccceeeecc
Q 032165 94 YVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHL 135 (146)
Q Consensus 94 y~t~ePC------~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~ 135 (146)
|||+||| +||+.+|+++||+||||+..+|..+..++.+.++.
T Consensus 63 yvtlEPC~~~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~ 110 (344)
T TIGR00326 63 YVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLK 110 (344)
T ss_pred EEeCCCCCCCCCCcHHHHHHHHcCCCEEEEEeCCCCccccchHHHHHh
Confidence 9999999 79999999999999999999988777665554444
No 15
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.94 E-value=1.7e-26 Score=167.84 Aligned_cols=103 Identities=33% Similarity=0.373 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCC----------------------CCccHHHHHH
Q 032165 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRN----------------------ATRHAEMEAI 67 (146)
Q Consensus 10 ~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~----------------------~~~HAE~~Ai 67 (146)
+++++||+.|...|.++ ++++..||||||++++||++|+|+.+++.. .+.|||+|||
T Consensus 7 ~wdeyfm~~A~l~a~Rs-tc~r~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~NAi 85 (164)
T COG2131 7 MWDEYFMAIAELVALRS-TCPRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQNAI 85 (164)
T ss_pred HHHHHHHHHHHHHHHHc-cCcccceeEEEEeCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHHHH
Confidence 58999999999999998 679999999999999999999999876521 3479999999
Q ss_pred HHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCC
Q 032165 68 DVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKF 124 (146)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~ 124 (146)
.++++. +..+.++++|+|+.||.+|+..|+++||++|||..+.+..
T Consensus 86 l~aa~~-----------g~~~~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~ 131 (164)
T COG2131 86 LQAARH-----------GVGLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTE 131 (164)
T ss_pred HHHHhc-----------CCCCCCcEEEEEecccHHHHHHHHHhCceEEEeecCCCcc
Confidence 999887 4556899999999999999999999999999999987654
No 16
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]
Probab=99.88 E-value=9e-23 Score=161.94 Aligned_cols=128 Identities=28% Similarity=0.407 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEee--CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhC-----------
Q 032165 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILE--DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKN----------- 77 (146)
Q Consensus 11 ~~~~~m~~a~~~A~~a~~~~~~pvGavIv~--~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~----------- 77 (146)
.+..+|+.++++|..+... .++|++|++ ...|++.|...... .+|..|+-|+++...+++....
T Consensus 166 ~~~ri~e~~I~~a~~~~~~--~~~~a~I~~p~~~~Via~~~~~~~~-~~P~eh~~mv~v~~v~rrq~~~~~~~~~~~~~~ 242 (344)
T KOG2771|consen 166 EIARIGELLIAMATDGHAS--RPVSAAIVDPVMDRVIAAGTGEVCA-YNPIEHCVMVLVHFVARRQEEGTWDLHPIPLLI 242 (344)
T ss_pred HHHHHHHHHHHHHhhhccc--cCccceecCCccceEEecCCCcccc-cCcHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 3567889999998887653 999999997 46677777665444 4799999999999998875433
Q ss_pred ------------------CCChhhhhccCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCccccceeeecccccc
Q 032165 78 ------------------GLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSK 139 (146)
Q Consensus 78 ------------------~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~~~~~ 139 (146)
+.+.+..+|.|+|+++|+|+|||.||+|||+|+||+||||+.+++..||+++.+++|+ .+
T Consensus 243 f~~~~~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~--~k 320 (344)
T KOG2771|consen 243 FNAVSSPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQ--RK 320 (344)
T ss_pred cccccchhhhhhchhccccccccccceeeecceEEEecChHHHHHHHHHHHhhhheeeccCCCCCCCccceeEeee--cc
Confidence 1122224599999999999999999999999999999999999999999999999998 99
Q ss_pred cCCC
Q 032165 140 MLNR 143 (146)
Q Consensus 140 ~ln~ 143 (146)
+|||
T Consensus 321 ~LNh 324 (344)
T KOG2771|consen 321 SLNH 324 (344)
T ss_pred ccCc
Confidence 9997
No 17
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.85 E-value=1.2e-21 Score=147.34 Aligned_cols=102 Identities=31% Similarity=0.443 Sum_probs=88.1
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeecCCcCCC--------------------CCCccHHH
Q 032165 6 EEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETR--------------------NATRHAEM 64 (146)
Q Consensus 6 ~~~~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~-~g~ii~~g~N~~~~~~--------------------~~~~HAE~ 64 (146)
....++|++||.+|...|+++.+ ++..|||+||+ ++.||++|+|.++.+- .-+.|||+
T Consensus 61 ~~~lswd~yFM~iA~LsA~RSkD-pntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HAE~ 139 (230)
T KOG3127|consen 61 NGYLSWDDYFMAIAFLSAKRSKD-PNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHAEE 139 (230)
T ss_pred ccCccHHHHHHHHHHHHHHhccC-cccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEeehHH
Confidence 44567899999999999999954 89999988886 8999999999988641 13489999
Q ss_pred HHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeC
Q 032165 65 EAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCAN 121 (146)
Q Consensus 65 ~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~ 121 (146)
|||.+..+. ...++++|+|+-||.-|+..|+++||++|||+...
T Consensus 140 NAi~~~~~~-------------~~~~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~ 183 (230)
T KOG3127|consen 140 NAILNKGRE-------------RVGGCSLYVTLCPCNECAKLIIQAGIKEVYYSSSY 183 (230)
T ss_pred HHHHHhCcc-------------ccCCceEEEeecchHHHHHHHHHhhhhheeecccc
Confidence 999987544 35679999999999999999999999999999865
No 18
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.84 E-value=3e-20 Score=128.51 Aligned_cols=95 Identities=24% Similarity=0.316 Sum_probs=81.4
Q ss_pred HHHHHHHHHhhc-CCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEE
Q 032165 17 DLAIQQAKLALD-SLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLY 94 (146)
Q Consensus 17 ~~a~~~A~~a~~-~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly 94 (146)
+.|++.+.+++. .+++||||+|+. +|+|+ .|+|.+....+++.|||+.||.++... ......+++|
T Consensus 2 ~~a~~~~~~a~~~~~~~~vga~i~~~~g~i~-~G~n~e~~~~~~~~hAE~~ai~~~~~~-----------~~~~~~~~i~ 69 (112)
T cd01283 2 EAALAAAEFAYAPYSNFTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIGKAVSE-----------GLRRYLVTWA 69 (112)
T ss_pred HHHHHHHHhCcCCCCCCeEEEEEEECCCCEE-EeEEeecCCCCCCcCHHHHHHHHHHHc-----------CCCceEEEEE
Confidence 456777777744 479999999996 68887 899999888899999999999998766 2234588999
Q ss_pred Ec-----CCChHHHHHHHHHhCCCEEEEeeeCCC
Q 032165 95 VT-----CEPCIMCAAALSILGIKEVYYGCANEK 123 (146)
Q Consensus 95 ~t-----~ePC~mC~~al~~sgi~~Vvy~~~~~~ 123 (146)
+| +|||.||+++|.+.++++|+|...+++
T Consensus 70 vs~~~~~~sPC~~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 70 VSDEGGVWSPCGACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred EECCCCccCCCHHHHHHHHHhCCCCeEEEEEcCC
Confidence 99 999999999999999999999987654
No 19
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=99.53 E-value=1.4e-13 Score=97.38 Aligned_cols=87 Identities=25% Similarity=0.365 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCc
Q 032165 14 AFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKC 91 (146)
Q Consensus 14 ~~m~~a~~~A~~a~~~-~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 91 (146)
+..+.|.+.+++++.. .++||||+|+. +|+|+. |.|.++...+++.|||+.||.++..+ | ...+...
T Consensus 2 ~l~~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~-G~n~e~~~~~~s~~AE~~Ai~~a~~~----g------~~~i~~i 70 (127)
T TIGR01354 2 KLFKAAQEARKNAYAPYSNFKVGAALLTKDGRIFT-GVNVENASYPLTICAERSAIGKAISA----G------YRKFVAI 70 (127)
T ss_pred HHHHHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEE-EEeecccCCCCCcCHHHHHHHHHHHc----C------CCCeEEE
Confidence 3568889999999864 58999999996 788876 99999999999999999999998765 2 1223444
Q ss_pred EEEE----cCCChHHHHHHHHHhC
Q 032165 92 CLYV----TCEPCIMCAAALSILG 111 (146)
Q Consensus 92 ~ly~----t~ePC~mC~~al~~sg 111 (146)
.++. ...||.||.+.|.+.+
T Consensus 71 ~vv~~~~~~~sPCG~Crq~l~e~~ 94 (127)
T TIGR01354 71 AVADSADDPVSPCGACRQVLAEFA 94 (127)
T ss_pred EEEeCCCCCcCccHHHHHHHHHhC
Confidence 4443 4689999999999987
No 20
>PRK06848 hypothetical protein; Validated
Probab=99.32 E-value=4.2e-11 Score=85.92 Aligned_cols=93 Identities=17% Similarity=0.207 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccC
Q 032165 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (146)
Q Consensus 10 ~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (146)
.+++++++.|.++++.++...+++|||++.. +|+|+ +|.|.++.....+.|||+.||-++... | ...+
T Consensus 5 ~~~~~L~~~A~~a~~~ay~ps~f~VgAa~l~~~G~i~-~G~NvEnas~~~tiCAEr~Ai~~av~~----g------~~~i 73 (139)
T PRK06848 5 SEDYELIKAAEKVIEKRYRNDWHHVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAIGKAISE----G------DHEI 73 (139)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEeCCCCEE-EEEEeecCCCCcccCHHHHHHHHHHHc----C------CCce
Confidence 3566789999999999988779999999996 77766 999999888888999999999988654 1 1111
Q ss_pred CCcEEEE------------cCCChHHHHHHHHHhCCC
Q 032165 89 SKCCLYV------------TCEPCIMCAAALSILGIK 113 (146)
Q Consensus 89 ~~~~ly~------------t~ePC~mC~~al~~sgi~ 113 (146)
....+.. ...||.+|.+.|.+.+-.
T Consensus 74 ~~i~~v~~~~~~~~~~~~~~~~PCG~CRQvl~E~~~~ 110 (139)
T PRK06848 74 DTIVAVRHPKPHEDDREIWVVSPCGACRELISDYGKN 110 (139)
T ss_pred EEEEEEecCcccccccCCCccCCChhhHHHHHHhCCC
Confidence 1111121 245999999999998643
No 21
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=99.29 E-value=2.7e-11 Score=83.40 Aligned_cols=96 Identities=24% Similarity=0.218 Sum_probs=71.4
Q ss_pred CCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhC------------CCChhhhhccCCCcEEEEcC
Q 032165 31 EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKN------------GLSQSEIAEKFSKCCLYVTC 97 (146)
Q Consensus 31 ~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~------------~~~~~~~~~~~~~~~ly~t~ 97 (146)
...|.|.+|+ +|+++..+.|.. ..+-+.|||+|.+.-........ |....+......|++||+|+
T Consensus 7 DR~VvA~lv~~~G~l~daa~NtN--a~N~~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~~~~l~~ga~l~vTl 84 (136)
T PF14439_consen 7 DRRVVAALVSPDGELVDAAVNTN--ADNKMLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEERRPLPPGARLLVTL 84 (136)
T ss_pred ccceeEEEECCCCcEEEeeeccC--CccceeehhhhhhhHHHHhhcccCCCcccccccCCCcchhhcCcCCCCcEEEEec
Confidence 4567788886 899999999964 46789999999998765542111 11112234556799999999
Q ss_pred CChHHHHHHHHHhCC-------CEEEEeeeCCCCccccce
Q 032165 98 EPCIMCAAALSILGI-------KEVYYGCANEKFGGCGSI 130 (146)
Q Consensus 98 ePC~mC~~al~~sgi-------~~Vvy~~~~~~~g~~~~~ 130 (146)
.||.||+..+.+++. .+|||+.++ .|++...
T Consensus 85 qcCkMCAalv~a~~d~pg~~~~~~vvY~~ed--~G~Lard 122 (136)
T PF14439_consen 85 QCCKMCAALVCAASDRPGRRVPIDVVYLNED--PGSLARD 122 (136)
T ss_pred hhHHHHHHHHHHHhhCcCCccceEEEEecCC--CCcchhH
Confidence 999999999999877 789998765 4776543
No 22
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=99.27 E-value=7.7e-11 Score=83.64 Aligned_cols=95 Identities=24% Similarity=0.299 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhhc-CCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCc
Q 032165 14 AFMDLAIQQAKLALD-SLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKC 91 (146)
Q Consensus 14 ~~m~~a~~~A~~a~~-~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 91 (146)
..+..|.+.+..++. ..+++|||+|.. +|+ +.+|.|.++.+..-+.|||+.||.++... | ...+...
T Consensus 7 ~l~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~-i~tG~NiEnasy~~t~CAErsAI~~ais~----G------~~~~~~v 75 (134)
T COG0295 7 ELFALAPEAAANAYAPYSKFKVGAALRTKDGR-IYTGANVENASYGLTVCAERSAIFKAISE----G------KRKFDAV 75 (134)
T ss_pred HHHHHHHHHHHhccCcccCCcEEEEEEeCCCC-EEEEEeeecccccchhhHHHHHHHHHHHc----C------CCcEEEE
Confidence 566777777777776 369999999996 565 55999999999999999999999998765 1 2223333
Q ss_pred EEEEc----CCChHHHHHHHHHhC-CCEEEEee
Q 032165 92 CLYVT----CEPCIMCAAALSILG-IKEVYYGC 119 (146)
Q Consensus 92 ~ly~t----~ePC~mC~~al~~sg-i~~Vvy~~ 119 (146)
.+|.. ..||.+|++.|.+.. -+..+|..
T Consensus 76 ~v~~~~~~~~sPCG~CRQ~i~Ef~~~d~~ii~~ 108 (134)
T COG0295 76 VVVADTGKPVSPCGACRQVLAEFCGDDTLIILL 108 (134)
T ss_pred EEEcCCCCCcCCcHHHHHHHHHhcCCCceEEEe
Confidence 34333 569999999999965 44445544
No 23
>PRK12411 cytidine deaminase; Provisional
Probab=99.24 E-value=2.3e-10 Score=81.43 Aligned_cols=88 Identities=25% Similarity=0.353 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCC
Q 032165 13 LAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (146)
Q Consensus 13 ~~~m~~a~~~A~~a~~~-~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (146)
+.+.+.|.+++.+++.. .+++|||++.. +|+|+ +|.|.++....++.|||+.||-++... | ...+..
T Consensus 4 ~~L~~~a~~~~~~ay~pyS~~~VgAa~~t~~G~i~-~G~nvEn~s~~~s~CAE~~Ai~~av~~----g------~~~i~~ 72 (132)
T PRK12411 4 KQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSE----G------DKEFVA 72 (132)
T ss_pred HHHHHHHHHHHHhcCCCccCCceEEEEEeCCCCEE-EEEEeecCCCCcCcCHHHHHHHHHHHC----C------CCceEE
Confidence 46788999999998865 68999999996 77766 999999888889999999999988654 1 111222
Q ss_pred cEEEE----cCCChHHHHHHHHHhC
Q 032165 91 CCLYV----TCEPCIMCAAALSILG 111 (146)
Q Consensus 91 ~~ly~----t~ePC~mC~~al~~sg 111 (146)
..++. ...||.+|.+.|.+..
T Consensus 73 i~v~~~~~~~~sPCG~CRQ~l~Ef~ 97 (132)
T PRK12411 73 IAIVADTKRPVPPCGACRQVMVELC 97 (132)
T ss_pred EEEEeCCCCCcCCchhHHHHHHHhC
Confidence 22222 1359999999999964
No 24
>PRK08298 cytidine deaminase; Validated
Probab=99.23 E-value=1.5e-10 Score=82.73 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCC
Q 032165 12 TLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (146)
Q Consensus 12 ~~~~m~~a~~~A~~a~~~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (146)
+++.++.|.++.++++...+ +|||+|+. +|+|+ +|.|.++.+...+.+||++||-++... |. ..+.-
T Consensus 4 ~~~L~~~A~~a~~~aY~PYS-~VgAAllt~dG~i~-tG~NvEnas~~~t~CAEr~Ai~~av~~----G~------~~~~~ 71 (136)
T PRK08298 4 EQALYDVAKQLIEQRYPNGW-GGAAAMRVEDGTIL-TSVAPEVINASTELCMETGAICEAHKL----QK------RVTHS 71 (136)
T ss_pred HHHHHHHHHHHHHhccCCCC-ceeEEEEeCCCCEE-EEEeecCCCCCcchhHHHHHHHHHHHC----CC------ceEEE
Confidence 56688999999888887556 99999996 77766 999999988889999999999988654 11 11111
Q ss_pred cEEEEc--------CCChHHHHHHHHHhCCC
Q 032165 91 CCLYVT--------CEPCIMCAAALSILGIK 113 (146)
Q Consensus 91 ~~ly~t--------~ePC~mC~~al~~sgi~ 113 (146)
..++.. ..||.+|.+.|.+.+-+
T Consensus 72 i~v~~~~~~~~~~~~sPCG~CRQvl~Ef~~~ 102 (136)
T PRK08298 72 ICVARENEHSELKVLSPCGVCQERLFYWGPD 102 (136)
T ss_pred EEEEcCCCcCCCcccCCChhHHHHHHHhCCC
Confidence 111111 35999999999999644
No 25
>PRK05578 cytidine deaminase; Validated
Probab=99.20 E-value=3.2e-10 Score=80.60 Aligned_cols=89 Identities=25% Similarity=0.389 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCC
Q 032165 12 TLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (146)
Q Consensus 12 ~~~~m~~a~~~A~~a~~~-~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (146)
.++++++|.+.+++++.. .+++|||+|.. +|+|. +|.|.++....++.|||+.||-++... | ...+.
T Consensus 3 ~~~L~~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~-~G~nvEna~~~~~~CAE~~Ai~~av~~----G------~~~i~ 71 (131)
T PRK05578 3 WKELIEAAIEASEKAYAPYSKFPVGAALLTDDGRIY-TGCNIENASYGLTNCAERTAIFKAISE----G------GGRLV 71 (131)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEEeeCccccCCcCHHHHHHHHHHHc----C------CCceE
Confidence 446788999998888863 58999999996 66755 999999888889999999999998654 1 11222
Q ss_pred CcEEEE----cCCChHHHHHHHHHhC
Q 032165 90 KCCLYV----TCEPCIMCAAALSILG 111 (146)
Q Consensus 90 ~~~ly~----t~ePC~mC~~al~~sg 111 (146)
...++. ...||.+|.+.|.+..
T Consensus 72 ~i~vv~~~~~~~sPCG~CRQ~l~e~~ 97 (131)
T PRK05578 72 AIACVGETGEPLSPCGRCRQVLAEFG 97 (131)
T ss_pred EEEEEecCCCccCccHHHHHHHHHhC
Confidence 222221 2569999999999875
No 26
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=99.06 E-value=1.3e-09 Score=86.33 Aligned_cols=88 Identities=24% Similarity=0.211 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeecCC--cCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhc
Q 032165 11 DTLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRT--TETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (146)
Q Consensus 11 ~~~~~m~~a~~~A~~a~~~-~~~pvGavIv~-~g~ii~~g~N~~--~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (146)
+++.+++.|.+.+++++.. .+++|||++.. +|+|+ +|.|.+ +.....+.|||+.||-++... | ..
T Consensus 21 ~~~~L~~~a~~a~~~AyaPYS~F~VGAall~~~G~iy-~GvNvE~~nas~~~tiCAEr~Ai~~Av~~----G------e~ 89 (283)
T TIGR01355 21 DPKLLPKLIPKAASYARAPISKFNVGAVGRGSSGRFY-LGVNVEFPGLPLHHSIHAEQFLISHLALN----N------ER 89 (283)
T ss_pred hHHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeccCCCCCCccccHHHHHHHHHHHc----C------CC
Confidence 3557888888888888763 59999999996 77765 999987 555667899999999888655 1 11
Q ss_pred cCCCcEEEEcCCChHHHHHHHHHhC
Q 032165 87 KFSKCCLYVTCEPCIMCAAALSILG 111 (146)
Q Consensus 87 ~~~~~~ly~t~ePC~mC~~al~~sg 111 (146)
.+ ..+.++..||.+|.+.|.+..
T Consensus 90 ~i--~~Iav~~~PCG~CRQ~l~Ef~ 112 (283)
T TIGR01355 90 GL--NDLAVSYAPCGHCRQFLNEIR 112 (283)
T ss_pred ce--EEEEEEeCCcchhHHHHHHhc
Confidence 22 345556789999999999974
No 27
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=98.86 E-value=5.7e-08 Score=71.29 Aligned_cols=94 Identities=24% Similarity=0.309 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhhc-CCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCC
Q 032165 12 TLAFMDLAIQQAKLALD-SLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (146)
Q Consensus 12 ~~~~m~~a~~~A~~a~~-~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (146)
..+...++.+....++. ..+++|||+++. +|+|+ .|.|.++....+++|||+.||.+++-. | ...+.
T Consensus 21 ~~~L~~l~~~A~~~AyaPyS~fkVGA~~r~ssGrif-~G~NVEn~~~~~sIcAEr~ai~~l~l~----g------~~k~~ 89 (173)
T KOG0833|consen 21 PQELLKLARKAMKLAYAPYSKFKVGAAGRASSGRIF-LGVNVENASYHHSICAERFAIANLALN----G------ERKFR 89 (173)
T ss_pred HHHHHHHHHHHHHhccCCccCCceEEEEEecCCcEE-EeeeecccCCCCcccHHHHHHHHHHHc----C------cccce
Confidence 34455555554444544 258999999995 66654 999999999999999999999998765 1 11222
Q ss_pred CcEEEE-----cCCChHHHHHHHHHhCCCEEE
Q 032165 90 KCCLYV-----TCEPCIMCAAALSILGIKEVY 116 (146)
Q Consensus 90 ~~~ly~-----t~ePC~mC~~al~~sgi~~Vv 116 (146)
-+-+-+ =..||.-|.+.|...+-...+
T Consensus 90 ~~aV~~~~~~~f~tPCG~CRQfl~Ef~~~~~l 121 (173)
T KOG0833|consen 90 AIAVVAYEDGDFTTPCGVCRQFLREFGNASLL 121 (173)
T ss_pred EEEEEecCCCCcCCCcHHHHHHHHHHhhccee
Confidence 211111 145999999999999987333
No 28
>PLN02402 cytidine deaminase
Probab=98.86 E-value=1.8e-08 Score=80.31 Aligned_cols=87 Identities=22% Similarity=0.227 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeecCCcCCCCC--CccHHHHHHHHHHHHHhhCCCChhhhhcc
Q 032165 12 TLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNA--TRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (146)
Q Consensus 12 ~~~~m~~a~~~A~~a~~~-~~~pvGavIv~-~g~ii~~g~N~~~~~~~~--~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (146)
++..+.++.+.++.++.. .+++|||++.. +|+|. +|.|.++..... +.|||+.||-++... | ...
T Consensus 25 ~~ll~~l~~~A~~~AyaPYS~F~VGAa~l~~~G~i~-~GvNVEnasy~l~~tiCAEr~Ai~~av~~----G------~~~ 93 (303)
T PLN02402 25 LQLLPSLVKSAQSLARPPISKYHVGAVGLGSSGRIF-LGVNLEFPGLPLHHSVHAEQFLITNLTLN----A------EPH 93 (303)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCeeeEEEEeCCCCEE-EEEeeecCCCCCCCcccHHHHHHHHHHHc----C------CCc
Confidence 344555555555566543 58999999996 67755 999998876544 899999999988655 1 112
Q ss_pred CCCcEEEEcCCChHHHHHHHHHhC
Q 032165 88 FSKCCLYVTCEPCIMCAAALSILG 111 (146)
Q Consensus 88 ~~~~~ly~t~ePC~mC~~al~~sg 111 (146)
+. .+.++..||.+|.+.|.+..
T Consensus 94 i~--~iaV~~sPCG~CRQ~l~Ef~ 115 (303)
T PLN02402 94 LK--YVAVSAAPCGHCRQFFQEIR 115 (303)
T ss_pred eE--EEEEEeCCCcccHHHHHHhc
Confidence 22 35566789999999999874
No 29
>PRK09027 cytidine deaminase; Provisional
Probab=98.76 E-value=8.7e-08 Score=76.40 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHhhc-CCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccC
Q 032165 11 DTLAFMDLAIQQAKLALD-SLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (146)
Q Consensus 11 ~~~~~m~~a~~~A~~a~~-~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (146)
+.+...+.|++.+++++. ..+++||++|.. +|+|+ .|+|.++...+++.+||+.||..+... |.+. ..+
T Consensus 188 ~~~~L~~~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~-~G~nvENAAynpslcaer~Al~~~v~~----G~~~----~~i 258 (295)
T PRK09027 188 TGDPLIQAALDAANRSHAPYSQSYSGVALETKDGRIY-TGRYAENAAFNPSLPPLQGALNLLNLS----GEDF----SDI 258 (295)
T ss_pred CHHHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHc----CCCc----cCE
Confidence 445788999999999987 359999999996 77766 999999999999999999999987644 2110 123
Q ss_pred CCcEEEEc----CCChHHHHHHHHHhCCCEEEE
Q 032165 89 SKCCLYVT----CEPCIMCAAALSILGIKEVYY 117 (146)
Q Consensus 89 ~~~~ly~t----~ePC~mC~~al~~sgi~~Vvy 117 (146)
....++.. ..||.+|.+.|...+-..+-|
T Consensus 259 ~~i~lv~~~~~~ispcg~cRq~L~ef~~~~~~~ 291 (295)
T PRK09027 259 QRAVLVEKADAKLSQWDATQATLKALGCHELER 291 (295)
T ss_pred EEEEEEeCCCCCcCchHHHHHHHHHhCCCCcEE
Confidence 33444433 359999999999876555444
No 30
>PLN02182 cytidine deaminase
Probab=98.72 E-value=1.3e-07 Score=76.36 Aligned_cols=86 Identities=21% Similarity=0.188 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhc-CCCCcEEEEEee-CCeEEEEeecCCcCCCCC--CccHHHHHHHHHHHHHhhCCCChhhhhccCCCc
Q 032165 16 MDLAIQQAKLALD-SLEVPVGCVILE-DGKVIAAGRNRTTETRNA--TRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKC 91 (146)
Q Consensus 16 m~~a~~~A~~a~~-~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~--~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 91 (146)
..++-..+..++. ..+++|||++.. +|+|. +|.|.++.+... +.|||+.||.++... | ...+...
T Consensus 49 ~~Ll~~A~~~AyaPyS~F~VGAa~l~~sG~iy-~GvNVEnas~pl~~tICAEr~AI~~A~~~----G------e~~i~~i 117 (339)
T PLN02182 49 PNLIRKAMCLARAPISKYKVGAVGRASSGRVY-LGVNVDFPGLPLHHSIHAEQFLVTNLALN----S------EKDLCEL 117 (339)
T ss_pred HHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeecCCCccCCccCHHHHHHHHHHHC----C------CCceEEE
Confidence 3333333444554 258999999996 77755 999998876544 899999999998655 1 1112211
Q ss_pred EEEEc------CCChHHHHHHHHHhCC
Q 032165 92 CLYVT------CEPCIMCAAALSILGI 112 (146)
Q Consensus 92 ~ly~t------~ePC~mC~~al~~sgi 112 (146)
.+.+. ..||.+|.+.|.+..-
T Consensus 118 aVaV~~~~~~~~sPCG~CRQfm~Ef~~ 144 (339)
T PLN02182 118 AVAISTDGKEFGTPCGHCLQFLMEMSN 144 (339)
T ss_pred EEEEecCCCCCcCCCchhHHHHHHhCC
Confidence 22221 5699999999999853
No 31
>PRK09027 cytidine deaminase; Provisional
Probab=98.68 E-value=3.6e-07 Score=72.90 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=56.5
Q ss_pred HHHHHhhcC-CCCcEEEEEee-CCeEEEEeecCCcC--CCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEc
Q 032165 21 QQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTE--TRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVT 96 (146)
Q Consensus 21 ~~A~~a~~~-~~~pvGavIv~-~g~ii~~g~N~~~~--~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t 96 (146)
..+..++.. .+++|||++.. +|+|. +|.|.++. ....+.|||..||-++... | ...+ ..+.++
T Consensus 59 ~a~~~AyaPyS~F~VGAa~~~~sG~iy-~GvNvE~~~~s~~~tiCAEr~Ai~~a~~~----G------e~~i--~~I~v~ 125 (295)
T PRK09027 59 LAAACAVTPISHFNVGAIARGVSGNFY-FGANMEFAGAALQQTVHAEQSAISHAWLR----G------EKAI--ADITVN 125 (295)
T ss_pred HHHHhccCCCCCCcEEEEEEeCCCCEE-EEEeeccCCCCCCCCcCHHHHHHHHHHHC----C------CCce--EEEEEE
Confidence 333345442 59999999996 67755 99998775 4567899999999988654 1 1122 345556
Q ss_pred CCChHHHHHHHHHhC
Q 032165 97 CEPCIMCAAALSILG 111 (146)
Q Consensus 97 ~ePC~mC~~al~~sg 111 (146)
..||.+|.+.|.+..
T Consensus 126 ~sPCG~CRQ~l~E~~ 140 (295)
T PRK09027 126 YTPCGHCRQFMNELN 140 (295)
T ss_pred ecCchhhHHHHHHhC
Confidence 779999999999874
No 32
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=98.46 E-value=1.2e-06 Score=69.58 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhhc-CCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCC
Q 032165 12 TLAFMDLAIQQAKLALD-SLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (146)
Q Consensus 12 ~~~~m~~a~~~A~~a~~-~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (146)
.+.+++.|.+.+++++. ..++||||+|+. +|+|+ .|.|.++...+++.+||..||..+...- .| ..+.
T Consensus 174 ~~~l~~~A~~a~~~sYaPYS~f~vgaal~~~~g~i~-~G~nvENAay~~slcaer~Ai~~~v~~g--~g-------~~~~ 243 (283)
T TIGR01355 174 ISHLKQQALKAANRSYAPYSKSPSGVALLDKEGKVY-RGWYIESAAFNPSLGPVQAALVDFMANG--GG-------KGFE 243 (283)
T ss_pred HHHHHHHHHHHHHhccCCCcCCceeEEEEeCCCCEE-EEEEeecCCCCCcccHHHHHHHHHHHhC--CC-------CChh
Confidence 34588999999999987 359999999997 66655 9999999999999999999999876540 01 1122
Q ss_pred C---cEEEE----cCCChHHHHHHHHHhCCC
Q 032165 90 K---CCLYV----TCEPCIMCAAALSILGIK 113 (146)
Q Consensus 90 ~---~~ly~----t~ePC~mC~~al~~sgi~ 113 (146)
+ .+|-- ...||.+|.+.|...+..
T Consensus 244 ~i~~aVl~e~~~~~vs~~~~~r~~l~~~~p~ 274 (283)
T TIGR01355 244 DIVRAVLVEKADAKVSHEATARTLLETIAPS 274 (283)
T ss_pred heeEEEEEecCCCccChHHHHHHHHHHhCCC
Confidence 2 22211 235999999999987654
No 33
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=97.94 E-value=1.9e-05 Score=64.87 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=33.5
Q ss_pred CCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCcc
Q 032165 88 FSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGG 126 (146)
Q Consensus 88 ~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~ 126 (146)
..|.++|+|.+||.-|+.+|+.+||+|||+++ ||+..|
T Consensus 43 i~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G 80 (360)
T PRK14719 43 INANFITVSNTPVFQIADDLIAENISEVILLT-DFDRAG 80 (360)
T ss_pred CCCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCCCCC
Confidence 45889999999999999999999999999999 555443
No 34
>PLN02402 cytidine deaminase
Probab=97.81 E-value=7.7e-05 Score=59.73 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhhc-CCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHH
Q 032165 12 TLAFMDLAIQQAKLALD-SLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73 (146)
Q Consensus 12 ~~~~m~~a~~~A~~a~~-~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~ 73 (146)
.+.+++.|++.+++++. ..+++|||+|+. +|+|+ .|+|.++...+++.+||..||..+...
T Consensus 192 ~~~L~~~A~~a~~~sYaPYS~f~VGaal~~~dG~i~-~G~nvENAay~~slcAer~Ai~~~v~~ 254 (303)
T PLN02402 192 SDDLKNEALEAANKSHAPYSNCPSGVALMDCEGKVY-RGSYMESAAYNPSMGPVQAALVAYVAG 254 (303)
T ss_pred HHHHHHHHHHHHHcccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHc
Confidence 46788999999999987 359999999996 67755 999999999999999999999988654
No 35
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=97.48 E-value=0.0014 Score=47.23 Aligned_cols=52 Identities=27% Similarity=0.395 Sum_probs=41.8
Q ss_pred CccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHH----HhCCCEEEEeee
Q 032165 59 TRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALS----ILGIKEVYYGCA 120 (146)
Q Consensus 59 ~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~----~sgi~~Vvy~~~ 120 (146)
..|||+.+|.++.++ | .......+|||...+|..|.+.|- .+|++++.+...
T Consensus 80 ~~HAE~~aiqqA~d~----G------~~~g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 80 KAHAEAGAIQQAYDA----G------KTVGRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred HHHHHHHHHHHHHHh----c------CccCCeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEec
Confidence 479999999999887 2 112467899999999999988664 589999888655
No 36
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=97.11 E-value=0.0017 Score=45.68 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHH
Q 032165 11 DTLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73 (146)
Q Consensus 11 ~~~~~m~~a~~~A~~a~~~-~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~ 73 (146)
..+...+.|++.|++++.. .+.|+|++|+. +|+| ..|++.++...+|+..+...||..+...
T Consensus 32 ~~d~l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i-~~G~y~EnAAfNPSl~PlQ~AL~~~~~~ 95 (124)
T PF08211_consen 32 SEDPLVQAALEAANRSYAPYSKCPSGVALLTSDGRI-YTGRYAENAAFNPSLPPLQAALVQAVLA 95 (124)
T ss_dssp -SSHHHHHHHHHHCT-B-TTT---EEEEEEETTS-E-EEEE-B--TTSTT-B-HHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhccCCccCCceeEEEEeCCCCE-EEEEEEeecccCCChHHHHHHHHHHHHc
Confidence 3445788899999999873 58999999996 6665 5999999999999999999999887544
No 37
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=95.82 E-value=0.064 Score=37.64 Aligned_cols=48 Identities=27% Similarity=0.358 Sum_probs=31.1
Q ss_pred CCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEE-------------cCCChHHHHHHHHHhCC
Q 032165 58 ATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYV-------------TCEPCIMCAAALSILGI 112 (146)
Q Consensus 58 ~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~-------------t~ePC~mC~~al~~sgi 112 (146)
...|||+.||.++....... ...+.+..+++ -..||..|...+.+.||
T Consensus 65 ~G~cAEv~avn~~L~~~d~~-------~~~~~~a~~~~~~ir~~~~~~~G~~~~pC~nC~~~l~~~~v 125 (125)
T PF14431_consen 65 AGRCAEVIAVNDALWARDAA-------RRSLEGAKITTRRIREPGDPEHGKYAPPCRNCAALLKHFGV 125 (125)
T ss_pred CCcccHHHHHHHHHHhhhcc-------ccccccccceeeeeecccCCCCCCCCCCCchHHHHHhhcCC
Confidence 55799999999987653220 01122222221 34599999999999886
No 38
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=94.44 E-value=0.023 Score=39.67 Aligned_cols=56 Identities=27% Similarity=0.392 Sum_probs=40.4
Q ss_pred CCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHH---HHHHHHHh-CCCEEEEeeeCC
Q 032165 57 NATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIM---CAAALSIL-GIKEVYYGCANE 122 (146)
Q Consensus 57 ~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~m---C~~al~~s-gi~~Vvy~~~~~ 122 (146)
....|+|..++.++.+. |.++.+ =..||+-+|||.. |+..|-.+ ---+|.|..+.+
T Consensus 43 ~~~~H~E~~il~~l~~~----~v~p~~------I~elYtEl~PC~~~~~C~~~l~~~~p~a~vt~s~~yg 102 (118)
T PF14440_consen 43 GGKPHSERAILHQLRAH----GVPPEQ------ITELYTELEPCELGGYCARMLRNSLPGAEVTYSFDYG 102 (118)
T ss_pred CCCCChHHHHHHHHHHc----CCcHHH------HHHHHHhcccccccchHHHHHHhhCCCCeEEEeccCC
Confidence 46789999999887653 333221 2359999999998 99999986 234778776654
No 39
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=94.08 E-value=0.14 Score=36.39 Aligned_cols=46 Identities=13% Similarity=0.314 Sum_probs=35.9
Q ss_pred CCccHHHHHHHHHHHHHhhCCCChhhhhccC--CCcEEEEcCCChHHHHHHHHHhC
Q 032165 58 ATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF--SKCCLYVTCEPCIMCAAALSILG 111 (146)
Q Consensus 58 ~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~--~~~~ly~t~ePC~mC~~al~~sg 111 (146)
....+|...|.+.++++... ... ...+|||.+.||..|...|.+..
T Consensus 72 R~~DsE~KiL~~ia~~l~~~--------~~~~~G~i~l~te~~pC~SC~~vi~qF~ 119 (133)
T PF14424_consen 72 RNNDSEYKILEDIAKKLGDN--------PDPSGGTIDLFTELPPCESCSNVIEQFK 119 (133)
T ss_pred ccccHHHHHHHHHHHHhccc--------cccCCceEEEEecCCcChhHHHHHHHHH
Confidence 45689999999998886432 122 35789999999999999988864
No 40
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=92.45 E-value=0.26 Score=37.03 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=42.0
Q ss_pred CCcEEEEEee--CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHH----HH
Q 032165 31 EVPVGCVILE--DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIM----CA 104 (146)
Q Consensus 31 ~~pvGavIv~--~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~m----C~ 104 (146)
+..+-|.-|. +|..+-.|+-.-. .....|||+.-|......... + .......|.|+|..||.- |+
T Consensus 23 ~~t~Lcy~v~~~~~~~~~~g~~~n~--~~~~~HAE~~fl~~i~~~~~~---~----~~~~y~ITwy~SwSPC~~~~~~Ca 93 (188)
T PF08210_consen 23 NKTYLCYEVEGRDGSWVQRGYFRNE--NCKGRHAELCFLDWIRSWLLF---D----PDQIYRITWYLSWSPCPESDHCCA 93 (188)
T ss_dssp SS-EEEEEEEEECTTEEEECECCST--TSTSB-HHHHHHHHCCCGTB----T----TTSEEEEEEEESSS--CC----HH
T ss_pred CeEEEEEEEEEecCCCceEEEEECC--CCCCCCHHHHHHHHHHHhhcc---C----CCceEEEEEEEecCCCcchhhHHH
Confidence 4555566664 5545556654311 116889999999876433100 0 122345689999999999 99
Q ss_pred HHHHHh
Q 032165 105 AALSIL 110 (146)
Q Consensus 105 ~al~~s 110 (146)
..|+..
T Consensus 94 ~~i~~F 99 (188)
T PF08210_consen 94 EKIAEF 99 (188)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
No 41
>PF14441 OTT_1508_deam: OTT_1508-like deaminase
Probab=88.08 E-value=1.7 Score=30.91 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=32.8
Q ss_pred CCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHHHhC
Q 032165 55 TRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILG 111 (146)
Q Consensus 55 ~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~sg 111 (146)
...+..|||+..+....+. . ....-.+=++.-||.+|...|...+
T Consensus 63 ~~~~~vHaE~~ll~~~~~~----~--------~~~~~yIG~SK~~C~lC~~~~~~~~ 107 (142)
T PF14441_consen 63 SFKPSVHAEMQLLDHLERH----F--------DPPPRYIGCSKPSCFLCYLYFQAHG 107 (142)
T ss_pred CCCCCeehHHHHHHHHHHh----c--------CCCCCEEEEeCchHHhHHHHHHHhC
Confidence 3568899999999877644 1 0112234468889999999999988
No 42
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=75.95 E-value=5.9 Score=29.75 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=32.8
Q ss_pred CCcEEEEEe-e-C-------C-eEEEEeecCCcCCCCCCccHHHHHHHHHHH
Q 032165 31 EVPVGCVIL-E-D-------G-KVIAAGRNRTTETRNATRHAEMEAIDVLLD 72 (146)
Q Consensus 31 ~~pvGavIv-~-~-------g-~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~ 72 (146)
+.||=+++. + + + .....|.|.+.+...++.++|+|||-++..
T Consensus 36 ~kPVlavLlV~~~~~~~~~~~~~~~~~gvN~EvSmPTGSlCSErNAiG~aLA 87 (193)
T PF14421_consen 36 RKPVLAVLLVDKNHCEVHGDGRPEFVRGVNYEVSMPTGSLCSERNAIGKALA 87 (193)
T ss_pred CCcEEEEEEEeccccccCCCCCccEEEEEEeEEcCCCcchhHHHHHhhhhhh
Confidence 566666655 4 2 2 367899999999999999999999999644
No 43
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=70.67 E-value=9.9 Score=19.51 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=13.1
Q ss_pred cEEEEEeeCCeEEEEeecC
Q 032165 33 PVGCVILEDGKVIAAGRNR 51 (146)
Q Consensus 33 pvGavIv~~g~ii~~g~N~ 51 (146)
-..++|.++|++.+.|.|.
T Consensus 9 ~ht~al~~~g~v~~wG~n~ 27 (30)
T PF13540_consen 9 YHTCALTSDGEVYCWGDNN 27 (30)
T ss_dssp SEEEEEE-TTEEEEEE--T
T ss_pred CEEEEEEcCCCEEEEcCCc
Confidence 3567777899999999986
No 44
>PRK09732 hypothetical protein; Provisional
Probab=62.25 E-value=53 Score=23.24 Aligned_cols=61 Identities=11% Similarity=0.040 Sum_probs=39.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHH
Q 032165 4 SGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73 (146)
Q Consensus 4 ~~~~~~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~ 73 (146)
...+....-.+.++.|++.|++ .+.|+..+||| .|.++..-.-. .-..|.-..|+.|+...
T Consensus 4 ~~~Ltl~~A~~~~~aA~~~A~~----~g~~v~iaVvD~~G~l~a~~RmD-----gA~~~s~~iA~~KA~TA 65 (134)
T PRK09732 4 KVILSQQMASAIIAAGQEEAQK----NNWSVSIAVADDGGHLLALSRMD-----DCAPIAAYISQEKARTA 65 (134)
T ss_pred cccCCHHHHHHHHHHHHHHHHH----hCCCEEEEEEcCCCCEEEEEEcC-----CCccccHHHHHHHHHHH
Confidence 3334434445556666666555 35799999998 78888776653 24457777888887654
No 45
>PF02132 RecR: RecR protein; InterPro: IPR023628 The bacterial protein RecR seems to play a role in a recombinational process of DNA repair []. It may act with RecF and RecO. RecR's structure consists of a N-terminal helix-hairpin-helix (HhH) motif, followed by a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif []. This entry represents the C4-type zinc finger.; PDB: 1VDD_D 2V1C_B.
Probab=62.02 E-value=18 Score=20.07 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=13.1
Q ss_pred ccCCCcEEEEcCCChHHHHH
Q 032165 86 EKFSKCCLYVTCEPCIMCAA 105 (146)
Q Consensus 86 ~~~~~~~ly~t~ePC~mC~~ 105 (146)
..+..|--++..+||.-|+.
T Consensus 18 ~~C~~C~nlse~~~C~IC~d 37 (41)
T PF02132_consen 18 KFCSICGNLSEEDPCEICSD 37 (41)
T ss_dssp EE-SSS--EESSSS-HHHH-
T ss_pred CccCCCCCcCCCCcCcCCCC
Confidence 46788889999999999974
No 46
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=61.09 E-value=59 Score=23.38 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=41.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHH
Q 032165 4 SGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73 (146)
Q Consensus 4 ~~~~~~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~ 73 (146)
++.+.-+.-++.++.|++.|++- ..||...||| .|.+++.-.- ..-..|.-..|+.|+..-
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~~~a~~Rm-----Dga~~~s~eiA~~KA~tA 66 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGHLVALERM-----DGASPLSAEIAFGKAYTA 66 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCCEEEEEec-----CCCcccchhHHHHHHHHH
Confidence 34444445556677777666663 6899999998 6787765443 345678888888887543
No 47
>PF14428 SCP1201-deam: SCP1.201-like deaminase
Probab=55.33 E-value=13 Score=26.50 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=32.6
Q ss_pred CCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEc-CCChHH---HHHHHHH---hCCCEEEEe
Q 032165 58 ATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVT-CEPCIM---CAAALSI---LGIKEVYYG 118 (146)
Q Consensus 58 ~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t-~ePC~m---C~~al~~---sgi~~Vvy~ 118 (146)
...|.|..+-...-+ ......+||++ ..||.- |...|-. -|-.=-|++
T Consensus 67 ~~~HVE~k~Aa~Mr~-------------~g~~~a~vvIN~n~pC~~~~gC~~~l~~iLP~GstLtV~~ 121 (135)
T PF14428_consen 67 AASHVEGKAAAWMRR-------------NGIKHATVVINPNGPCGGRDGCDQLLPAILPEGSTLTVHW 121 (135)
T ss_pred chhhhhHHHHHHHHH-------------cCCeEEEEEEeCCCCCCCccCHHHHHHHhCCCCCEEEEEe
Confidence 456999887544322 23568899999 999998 9886654 454444554
No 48
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=54.56 E-value=4.3 Score=20.43 Aligned_cols=9 Identities=56% Similarity=1.615 Sum_probs=1.3
Q ss_pred cCCChHHHH
Q 032165 96 TCEPCIMCA 104 (146)
Q Consensus 96 t~ePC~mC~ 104 (146)
|.-||.||.
T Consensus 2 sCCPCamc~ 10 (27)
T PF08098_consen 2 SCCPCAMCK 10 (27)
T ss_dssp -S--S----
T ss_pred cccccccce
Confidence 345888874
No 49
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=52.49 E-value=2.8 Score=26.06 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=15.1
Q ss_pred EEcCCChHHHHHHHHHhCCCE
Q 032165 94 YVTCEPCIMCAAALSILGIKE 114 (146)
Q Consensus 94 y~t~ePC~mC~~al~~sgi~~ 114 (146)
|=+++|||.|-...+..+...
T Consensus 3 ~d~lKPCPFCG~~~~~v~~~~ 23 (64)
T PRK09710 3 YDNVKPCPFCGCPSVTVKAIS 23 (64)
T ss_pred cccccCCCCCCCceeEEEecC
Confidence 458899999987766555433
No 50
>PLN02182 cytidine deaminase
Probab=51.92 E-value=59 Score=26.81 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHH
Q 032165 12 TLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLD 72 (146)
Q Consensus 12 ~~~~m~~a~~~A~~a~~~-~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~ 72 (146)
.+.....|++.|.+++.. .+-|-|.+|.+ +|+|. .|+=.++...||+.=+=..||..+..
T Consensus 201 ~~~l~~~Al~AAn~S~APYS~~~SGvAL~~~~G~vy-~G~YaEnAAfNPSL~PlQaALv~~~~ 262 (339)
T PLN02182 201 CSHLKCKALAAANNSFSPYTESPSGVALLDNDGKWY-RGWYIESVASNPSFGPVQAALVDFVA 262 (339)
T ss_pred ccHHHHHHHHHHHhccCCccCCCceEEEEeCCCCEE-EeeehhhcccCCCccHHHHHHHHHHH
Confidence 356678899999999874 47888888886 67755 78778888899998887878776543
No 51
>PF05507 MAGP: Microfibril-associated glycoprotein (MAGP); InterPro: IPR008673 This family consists of several mammalian microfibril-associated glycoprotein (MAGP) 1 and 2 proteins. MAGP1 and 2 are components of elastic fibres. MAGP-1 has been proposed to bind a C-terminal region of tropoelastin, the soluble precursor of elastin. MAGP-2 was found to interact with fibrillin-1 and -2, as well as fibulin-1, another component of elastic fibres. This suggests that MAGP-2 may be important in the assembly of microfibrils [].; GO: 0001527 microfibril
Probab=51.54 E-value=18 Score=25.69 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=25.6
Q ss_pred cEEEEcCCChHHHHHHHHHhCCCEEEEe
Q 032165 91 CCLYVTCEPCIMCAAALSILGIKEVYYG 118 (146)
Q Consensus 91 ~~ly~t~ePC~mC~~al~~sgi~~Vvy~ 118 (146)
+-||.-+.||-.|...|--..++|+|.-
T Consensus 91 tRlySvhrP~kqCi~~lCf~slrRmYvI 118 (137)
T PF05507_consen 91 TRLYSVHRPCKQCIHQLCFYSLRRMYVI 118 (137)
T ss_pred eeehhccccHHHHHHHHHhhceeeEEEe
Confidence 4699999999999999999999999885
No 52
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=49.51 E-value=19 Score=24.89 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=32.2
Q ss_pred CccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEE--EcCCChHHHHHHHHHhCC---CEEEEeeeC
Q 032165 59 TRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLY--VTCEPCIMCAAALSILGI---KEVYYGCAN 121 (146)
Q Consensus 59 ~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly--~t~ePC~mC~~al~~sgi---~~Vvy~~~~ 121 (146)
-.|-|..++++..-. .+.|=.|. -...||+.|.+++.++-- ..|.|..++
T Consensus 48 aTHTE~ri~~~l~~~-------------~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 48 ATHTEARITRDLPLN-------------QVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhHhHHHhhcCcc-------------ccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 369999998776433 11133333 367799999999998532 356775543
No 53
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=49.07 E-value=1.4e+02 Score=24.06 Aligned_cols=97 Identities=14% Similarity=0.224 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeC---------------CeEEEEeecCCcCCC---------CCCccHHHHH
Q 032165 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILED---------------GKVIAAGRNRTTETR---------NATRHAEMEA 66 (146)
Q Consensus 11 ~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~---------------g~ii~~g~N~~~~~~---------~~~~HAE~~A 66 (146)
.|..||+.|+++=++- +=+.+|-.+-.. +=+|-+||+...+.. ..+.|= +.|
T Consensus 113 GD~~YL~~Cl~~Ykql---~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyF-Vea 188 (287)
T PF05582_consen 113 GDEEYLNKCLKVYKQL---GIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKYF-VEA 188 (287)
T ss_pred CCHHHHHHHHHHHHHc---CCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCchhhhcCCCChhhhhhhhccHHH-HHH
Confidence 4789999999875553 223344443321 457789999765432 111221 334
Q ss_pred HHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHHHhC------CCEEEEeeeCCCC
Q 032165 67 IDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILG------IKEVYYGCANEKF 124 (146)
Q Consensus 67 i~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~sg------i~~Vvy~~~~~~~ 124 (146)
++.+ |++ ...+.+.++|.- -|-.|..+|+.+| .+||.+.+-+|-+
T Consensus 189 V~~a-R~~----------ep~~D~LVIfAG--ACQS~fEall~AGANFASSP~RVlIHalDPV~ 239 (287)
T PF05582_consen 189 VKEA-RKY----------EPNLDDLVIFAG--ACQSHFEALLEAGANFASSPKRVLIHALDPVF 239 (287)
T ss_pred HHHH-Hhc----------CCCcccEEEEcc--hhHHHHHHHHHcCccccCCccceEEeccCcce
Confidence 4433 332 234567788876 5999999999998 5788888888864
No 54
>PF08903 DUF1846: Domain of unknown function (DUF1846); InterPro: IPR014999 This group of proteins are functionally uncharacterised. ; PDB: 3BH1_B.
Probab=47.87 E-value=64 Score=27.66 Aligned_cols=86 Identities=20% Similarity=0.194 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCC-----------------
Q 032165 17 DLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGL----------------- 79 (146)
Q Consensus 17 ~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~----------------- 79 (146)
..|.+.|++. +.|.+|+-+.||+|| +|.+. .+.+|--.+|.++.+.+..-+.
T Consensus 344 ~~A~~~ae~t----~~pa~AieL~DG~Iv-TGktS------~LlgasaA~lLNAlK~LagI~d~i~Lisp~~iepIq~LK 412 (491)
T PF08903_consen 344 AAAREKAEET----GAPAAAIELPDGTIV-TGKTS------DLLGASAAALLNALKYLAGIDDEIHLISPEIIEPIQKLK 412 (491)
T ss_dssp HHHHHHHHHH----SS-EEEEE-TTS-EE-EEE--------SSB-HHHHHHHHHHHHHHT--TT---S-HHHHHHHHHHH
T ss_pred HHHHHHHHHh----CCCeEEEEeCCCCEE-eCCCc------cccchHHHHHHHHHHHHcCCCcccCccCHHHHHHHHHHh
Confidence 3444444443 678888878899998 88775 6778888888777665433220
Q ss_pred -----------Chh--------------------hhhccCCCcEEEEcCCChHHHHHHHHHhCCC
Q 032165 80 -----------SQS--------------------EIAEKFSKCCLYVTCEPCIMCAAALSILGIK 113 (146)
Q Consensus 80 -----------~~~--------------------~~~~~~~~~~ly~t~ePC~mC~~al~~sgi~ 113 (146)
..+ +....+.||.+.+|.=+-..=...+...||.
T Consensus 413 ~~~Lg~~nprLh~dEvLIALsisA~tn~~A~~Al~qL~~L~gc~aHstvils~~De~~~rkLGi~ 477 (491)
T PF08903_consen 413 TNYLGSKNPRLHTDEVLIALSISAATNPNARLALEQLPKLKGCEAHSTVILSSVDEKTFRKLGIN 477 (491)
T ss_dssp HHTS--S---B-HHHHHHHHHHHTTT-HHHHHHHGGGGGGTT-EEEESS---HHHHHHHHHTT-E
T ss_pred HHHhCCCCCCCcHHHHHHHHHHHhcCCHHHHHHHHhhhhccCCceEEeecCChhhHHHHHHcCCc
Confidence 000 0244677888888877766666666777763
No 55
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=47.48 E-value=8.6 Score=27.39 Aligned_cols=10 Identities=40% Similarity=1.205 Sum_probs=8.5
Q ss_pred cCCChHHHHH
Q 032165 96 TCEPCIMCAA 105 (146)
Q Consensus 96 t~ePC~mC~~ 105 (146)
..+||++|..
T Consensus 32 gl~PC~LCiy 41 (135)
T PRK00611 32 NVEPCVLCYY 41 (135)
T ss_pred CCCCchHHHH
Confidence 6889999975
No 56
>PHA03005 sulfhydryl oxidase; Provisional
Probab=47.09 E-value=9.8 Score=25.41 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=10.5
Q ss_pred EEEcCCChHHHHHHHHH
Q 032165 93 LYVTCEPCIMCAAALSI 109 (146)
Q Consensus 93 ly~t~ePC~mC~~al~~ 109 (146)
+-.|+ ||++|..--..
T Consensus 37 I~~tL-PC~~Cr~HA~~ 52 (96)
T PHA03005 37 ICSTL-PCPACRRHAKE 52 (96)
T ss_pred hhhcC-CCHHHHHHHHH
Confidence 33355 99999875443
No 57
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=45.84 E-value=8.5 Score=29.69 Aligned_cols=11 Identities=27% Similarity=0.721 Sum_probs=9.2
Q ss_pred EcCCChHHHHH
Q 032165 95 VTCEPCIMCAA 105 (146)
Q Consensus 95 ~t~ePC~mC~~ 105 (146)
.-++||+||..
T Consensus 48 lgL~PC~LCIy 58 (218)
T PRK04307 48 LYMAPCEQCVY 58 (218)
T ss_pred cCCCccHHHHH
Confidence 47899999965
No 58
>PRK13663 hypothetical protein; Provisional
Probab=44.56 E-value=63 Score=27.67 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHh
Q 032165 12 TLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQ 75 (146)
Q Consensus 12 ~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~ 75 (146)
+......|.+.|++. +.|.+|+-+.||+|| +|-+. ++.+|--.+|.++.+.+.
T Consensus 340 dR~vv~~A~~~a~~t----~~pa~AieL~DG~Ii-TGKtS------~LlgasaA~lLNAlK~LA 392 (493)
T PRK13663 340 DRKVVVAAREKAEET----GEPALAIELPDGTIV-TGKTS------ELLGATAAVLLNALKHLA 392 (493)
T ss_pred hhHHHHHHHHHHHHh----CCCeEEEEeCCCCEE-eCCCc------cccchHHHHHHHHHHHHc
Confidence 444444555555443 357777777899988 77765 677888888888776643
No 59
>COG4827 Predicted transporter [General function prediction only]
Probab=42.77 E-value=27 Score=26.92 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=18.2
Q ss_pred cCCCcEEEEcCCChHHHHHHHHHh
Q 032165 87 KFSKCCLYVTCEPCIMCAAALSIL 110 (146)
Q Consensus 87 ~~~~~~ly~t~ePC~mC~~al~~s 110 (146)
+.+..+.+.-.-|||-|..++.-|
T Consensus 101 D~sK~~~~ais~PCPvCl~avavs 124 (239)
T COG4827 101 DVSKHTFLAISMPCPVCLGAVAVS 124 (239)
T ss_pred chhhceeEEEecCCcHHHHHHHHH
Confidence 566777777777999999887643
No 60
>TIGR00159 conserved hypothetical protein TIGR00159. These proteins have no detectable global or local homology to any protein of known function. Members are restricted to the bacteria and found broadly in lineages other than the Proteobacteria.
Probab=41.04 E-value=28 Score=26.76 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=23.9
Q ss_pred EEEEeeCCeEEEEeecCCcC-----CCCCCccHHHHHHH
Q 032165 35 GCVILEDGKVIAAGRNRTTE-----TRNATRHAEMEAID 68 (146)
Q Consensus 35 GavIv~~g~ii~~g~N~~~~-----~~~~~~HAE~~Ai~ 68 (146)
||+|+++|+|++.|+--..+ ..-++.|---..|.
T Consensus 127 GAvII~~~rI~aA~~~Lpls~~~~~~~lGtRHRAA~Gis 165 (211)
T TIGR00159 127 GAVIIRDNKIVAAGSYLPLSEQSISKSLGTRHRAALGIS 165 (211)
T ss_pred cEEEEECCEEEEEEEEecCCCCCCCCccChHHHHHHHHH
Confidence 89999999999998753222 23577887555554
No 61
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=40.79 E-value=2.5e+02 Score=24.59 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCc
Q 032165 12 TLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKC 91 (146)
Q Consensus 12 ~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 91 (146)
..+=|..|...++... +-.+ |++++|.+|+.|.-+. .-.++-..||.++.+. +..+.|+
T Consensus 397 e~~Dl~faw~v~K~vk---SNaI--Vvvkd~~~vgIgaGQ~-----sRvd~t~~Ai~rag~~-----------~~~~~ga 455 (513)
T PRK00881 397 ELKDLLFAWKVVKHVK---SNAI--VYAKDGQTVGIGAGQM-----SRVDSARIAIEKAGDA-----------GLDLKGA 455 (513)
T ss_pred HHHHHHHHHHHHHhcC---CCcE--EEEeCCeEEEECCCCc-----chHHHHHHHHHHHHHh-----------ccCcCCe
Confidence 3344566666665542 2222 7789999999998652 2236777888887654 2335677
Q ss_pred EEEEcC-CChHHHHHHHHHhCCCEEEE
Q 032165 92 CLYVTC-EPCIMCAAALSILGIKEVYY 117 (146)
Q Consensus 92 ~ly~t~-ePC~mC~~al~~sgi~~Vvy 117 (146)
++-.-. .|=+-+......+|++-|+-
T Consensus 456 v~aSDafFPf~Dtie~aa~~Gv~aIiq 482 (513)
T PRK00881 456 VLASDAFFPFRDGVEAAAKAGITAIIQ 482 (513)
T ss_pred EEEeeCCCCchhHHHHHHHcCCeEEEe
Confidence 665433 37789999999999988876
No 62
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=38.69 E-value=14 Score=26.36 Aligned_cols=10 Identities=40% Similarity=1.119 Sum_probs=8.5
Q ss_pred cCCChHHHHH
Q 032165 96 TCEPCIMCAA 105 (146)
Q Consensus 96 t~ePC~mC~~ 105 (146)
..+||++|..
T Consensus 33 gl~PC~LCi~ 42 (139)
T PRK03113 33 KFEPCVLCWY 42 (139)
T ss_pred CCCCCHHHHH
Confidence 6889999975
No 63
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=38.49 E-value=88 Score=23.45 Aligned_cols=42 Identities=21% Similarity=0.421 Sum_probs=30.7
Q ss_pred CCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCC
Q 032165 31 EVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLS 80 (146)
Q Consensus 31 ~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~ 80 (146)
++...+.|+..|+++++|.-.+ +--..|+.+..+.+++.+.+
T Consensus 51 ePk~a~LIF~SGK~VcTGaKs~--------ed~~~av~~~~~~L~~~g~~ 92 (185)
T COG2101 51 EPKTAALIFRSGKVVCTGAKSV--------EDVHRAVKKLAKKLKDGGID 92 (185)
T ss_pred CCcceEEEEecCcEEEeccCcH--------HHHHHHHHHHHHHHHhcCcC
Confidence 4667777778999999998753 44566777777777765543
No 64
>PF02457 DisA_N: DisA bacterial checkpoint controller nucleotide-binding; InterPro: IPR003390 The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, IPR018906 from INTERPRO that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, IPR000445 from INTERPRO the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis.; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 2FB5_A.
Probab=37.65 E-value=21 Score=24.86 Aligned_cols=17 Identities=41% Similarity=0.798 Sum_probs=14.9
Q ss_pred EEEEEeeCCeEEEEeec
Q 032165 34 VGCVILEDGKVIAAGRN 50 (146)
Q Consensus 34 vGavIv~~g~ii~~g~N 50 (146)
=||+|+++|+|++.|.+
T Consensus 56 DGAviI~~~~i~aag~~ 72 (122)
T PF02457_consen 56 DGAVIIDGGRIVAAGAI 72 (122)
T ss_dssp SSEEEEETTCCEEEEEE
T ss_pred CceEEEECCeEEEEEEE
Confidence 48999999999998877
No 65
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=36.63 E-value=2.3e+02 Score=22.85 Aligned_cols=97 Identities=10% Similarity=0.175 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeC---------------CeEEEEeecCCcCCC---------CCCccHHHHH
Q 032165 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILED---------------GKVIAAGRNRTTETR---------NATRHAEMEA 66 (146)
Q Consensus 11 ~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~---------------g~ii~~g~N~~~~~~---------~~~~HAE~~A 66 (146)
.|..||+.|+++=++- +=+.+|-.+-.. +=+|-+||+...+.. ..+.|= +.|
T Consensus 112 GD~~YL~~Cl~~Ykql---~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyF-Vea 187 (283)
T TIGR02855 112 GDPEYLRKCLKLYKKI---GVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKYF-VET 187 (283)
T ss_pred CCHHHHHHHHHHHHHh---CCceEEEEecchhchHHHHHHHHHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHHH-HHH
Confidence 4789999999875553 234445444432 447789998664321 112221 344
Q ss_pred HHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHHHhC------CCEEEEeeeCCCC
Q 032165 67 IDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILG------IKEVYYGCANEKF 124 (146)
Q Consensus 67 i~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~sg------i~~Vvy~~~~~~~ 124 (146)
++.+ |++ ...+.++++|.- -|-.|..+|+.+| ..||-+.+-+|-+
T Consensus 188 Vk~a-R~y----------~~~~D~LVIFAG--ACQS~yEall~AGANFASSP~RVlIHalDPV~ 238 (283)
T TIGR02855 188 VREA-RKY----------VPSLDQLVIFAG--ACQSHFESLIRAGANFASSPSRVNIHALDPVY 238 (283)
T ss_pred HHHH-Hhc----------CCCcccEEEEcc--hhHHHHHHHHHcCccccCCccceEEeccCcce
Confidence 4433 332 134567788876 5999999999998 4788888888764
No 66
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=35.06 E-value=1.5e+02 Score=20.37 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHH
Q 032165 13 LAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73 (146)
Q Consensus 13 ~~~m~~a~~~A~~a~~~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~ 73 (146)
.+.+..|++.|++ .+.++..+||| .|.+++.-.- .....|....+.+|+...
T Consensus 9 ~~l~~~a~~~a~~----~g~~v~iaVvd~~G~~~~~~r~-----dga~~~~~~~a~~KA~Ta 61 (132)
T PF03928_consen 9 WKLGDAAVEEARE----RGLPVSIAVVDAGGHLLAFARM-----DGAPPDSIDWAQRKAYTA 61 (132)
T ss_dssp HHHHHHHHHHHHH----TT---EEEEEETTS-EEEEEE------TTS-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCCCeEEEEEECCCCEEEEEec-----CCCcccHHHHHHHHHHHH
Confidence 3455666666665 34568888887 7888876543 234567778888887544
No 67
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=34.58 E-value=57 Score=25.32 Aligned_cols=36 Identities=33% Similarity=0.556 Sum_probs=25.6
Q ss_pred CCCCcEEEEEee-CCeEEEEeecCCcCCCCC--CccHHH
Q 032165 29 SLEVPVGCVILE-DGKVIAAGRNRTTETRNA--TRHAEM 64 (146)
Q Consensus 29 ~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~--~~HAE~ 64 (146)
..+.-+-+||+. +|+|.+.|||--.-...+ ..|||+
T Consensus 72 ~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haev 110 (287)
T KOG1682|consen 72 KDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEV 110 (287)
T ss_pred ccccceeEEEEecCCccccccccHHHhhcCccchHHHHH
Confidence 356677788885 999999999943322333 679986
No 68
>PF05528 Coronavirus_5: Coronavirus gene 5 protein; InterPro: IPR008458 Infectious bronchitis virus, a member of Coronaviridae family, has a single-stranded positive-sense RNA genome, which is 27 kb in length. Gene 5 contains two (5a and 5b) open reading frames. The function of the 5a and 5b proteins is unknown [].
Probab=34.19 E-value=14 Score=23.44 Aligned_cols=20 Identities=25% Similarity=0.790 Sum_probs=14.3
Q ss_pred CcEEEE----cCCChHHHHHHHHH
Q 032165 90 KCCLYV----TCEPCIMCAAALSI 109 (146)
Q Consensus 90 ~~~ly~----t~ePC~mC~~al~~ 109 (146)
+|.-|+ +.|||+-|+....+
T Consensus 26 dcvyflN~aGqaE~Cp~CtsLvf~ 49 (82)
T PF05528_consen 26 DCVYFLNKAGQAEPCPACTSLVFR 49 (82)
T ss_pred ceEEeecccCccccCcchhhhhcc
Confidence 455555 68999999987544
No 69
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=33.73 E-value=71 Score=22.93 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCEEEEeeeCCCCc-cccceeeecccccccCCC
Q 032165 102 MCAAALSILGIKEVYYGCANEKFG-GCGSILSLHLSDSKMLNR 143 (146)
Q Consensus 102 mC~~al~~sgi~~Vvy~~~~~~~g-~~~~~~~~~~~~~~~ln~ 143 (146)
.....+...|++.|||-+.+.... .....-.+.+.|...|.+
T Consensus 75 ~w~~~l~~~GFkhV~~lT~D~~Wk~~~~~~~~liwlPaipLe~ 117 (142)
T PF10673_consen 75 DWCEELKESGFKHVFYLTSDSEWKQEEELEGSLIWLPAIPLEH 117 (142)
T ss_pred HHHHHHHhcCCcEEEEEecCcccccccCCCCcEEEEeCccccc
Confidence 345678889999999999887766 233333455566666654
No 70
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=33.59 E-value=1.2e+02 Score=19.00 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=26.6
Q ss_pred CCcEEEEEeeC-CeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHh
Q 032165 31 EVPVGCVILED-GKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQ 75 (146)
Q Consensus 31 ~~pvGavIv~~-g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~ 75 (146)
...+|+++.+. +....... ... ......++|..||..+.+...
T Consensus 14 ~~g~g~v~~~~~~~~~~~~~-~~~-~~~s~~~aEl~al~~al~~~~ 57 (130)
T cd06222 14 PAGAGVVLRDPGGEVLLSGG-LLG-GNTTNNRAELLALIEALELAL 57 (130)
T ss_pred ceEEEEEEEeCCCeEEEecc-ccC-CCCcHHHHHHHHHHHHHHHHH
Confidence 45678888874 43332222 211 244567999999999887643
No 71
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]
Probab=31.15 E-value=16 Score=29.95 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.8
Q ss_pred CChHHHHHHHHHhCCCEEEEe
Q 032165 98 EPCIMCAAALSILGIKEVYYG 118 (146)
Q Consensus 98 ePC~mC~~al~~sgi~~Vvy~ 118 (146)
+||.+|.|.++++-.+++.++
T Consensus 211 ~P~eh~~mv~v~~v~rrq~~~ 231 (344)
T KOG2771|consen 211 NPIEHCVMVLVHFVARRQEEG 231 (344)
T ss_pred CcHHHHHHHHHHHHHHHHhcc
Confidence 799999999999999998888
No 72
>COG1624 Uncharacterized conserved protein [Function unknown]
Probab=30.05 E-value=50 Score=25.96 Aligned_cols=34 Identities=38% Similarity=0.541 Sum_probs=22.5
Q ss_pred EEEEeeCCeEEEEeecCC------cCCCCCCccHHHHHHH
Q 032165 35 GCVILEDGKVIAAGRNRT------TETRNATRHAEMEAID 68 (146)
Q Consensus 35 GavIv~~g~ii~~g~N~~------~~~~~~~~HAE~~Ai~ 68 (146)
||+|+++++|++.|.=-. .+..-+++|=--.+|.
T Consensus 174 GAvII~~~kIvaAg~yLpls~~~~i~k~lGtRHrAAlgiS 213 (247)
T COG1624 174 GAVIIRDNKIVAAGRYLPLSEKSLISKGLGTRHRAALGIS 213 (247)
T ss_pred ceEEEeCCEEEEEEEEeccCCCCCcCccccHHHHHhhccc
Confidence 899999889998885322 2234467776555543
No 73
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=29.98 E-value=1.8e+02 Score=25.50 Aligned_cols=65 Identities=12% Similarity=0.013 Sum_probs=47.1
Q ss_pred EEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcC-CChHHHHHHHHHhCCCEE
Q 032165 37 VILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTC-EPCIMCAAALSILGIKEV 115 (146)
Q Consensus 37 vIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~-ePC~mC~~al~~sgi~~V 115 (146)
|++++|..|+.|.-+. .-.++-..|+.++.+. +..++|+.|-.-. .|=.-|......+||+-|
T Consensus 415 v~akd~~tvGiGaGQ~-----sRV~s~riA~~kA~~~-----------~~~~~G~vlASDAFFPF~D~ve~aa~aGi~aI 478 (511)
T TIGR00355 415 VYAKNNMTVGVGAGQM-----SRVGSAKIAGIKADDE-----------GLEAKGSSLASDAFFPFRDGVEEAAAAGITCI 478 (511)
T ss_pred EEEeCCeEEEecCCCc-----cHHHHHHHHHHHHHhh-----------CCCccCcEEEeccccCCCccHHHHHHcCCEEE
Confidence 4447999999998763 2346777788877543 2345677765533 488999999999999888
Q ss_pred EE
Q 032165 116 YY 117 (146)
Q Consensus 116 vy 117 (146)
+=
T Consensus 479 iQ 480 (511)
T TIGR00355 479 IQ 480 (511)
T ss_pred Ec
Confidence 74
No 74
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=29.95 E-value=40 Score=21.18 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=9.8
Q ss_pred cCCChHHHHHHHHH
Q 032165 96 TCEPCIMCAAALSI 109 (146)
Q Consensus 96 t~ePC~mC~~al~~ 109 (146)
+.-||++|..--..
T Consensus 14 ~tLPC~~Cr~HA~~ 27 (70)
T PF04805_consen 14 STLPCPECRIHAKE 27 (70)
T ss_pred hcCCCHHHHHHHHH
Confidence 34499999875544
No 75
>PRK01749 disulfide bond formation protein B; Provisional
Probab=28.32 E-value=26 Score=25.84 Aligned_cols=11 Identities=36% Similarity=1.059 Sum_probs=8.8
Q ss_pred EcCCChHHHHH
Q 032165 95 VTCEPCIMCAA 105 (146)
Q Consensus 95 ~t~ePC~mC~~ 105 (146)
...+||++|..
T Consensus 36 lgl~PC~LCi~ 46 (176)
T PRK01749 36 MLLKPCVMCIY 46 (176)
T ss_pred cCCCCcHhHHH
Confidence 36889999965
No 76
>PRK02110 disulfide bond formation protein B; Provisional
Probab=27.67 E-value=28 Score=25.52 Aligned_cols=10 Identities=30% Similarity=0.926 Sum_probs=8.3
Q ss_pred cCCChHHHHH
Q 032165 96 TCEPCIMCAA 105 (146)
Q Consensus 96 t~ePC~mC~~ 105 (146)
..+||++|..
T Consensus 37 g~~PC~LCi~ 46 (169)
T PRK02110 37 GEDPCPLCII 46 (169)
T ss_pred CCCCCHHHHH
Confidence 6789999964
No 77
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=27.53 E-value=53 Score=19.72 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=16.3
Q ss_pred cEEEEcCCChHHHHHHHHH---hCCCEEEE
Q 032165 91 CCLYVTCEPCIMCAAALSI---LGIKEVYY 117 (146)
Q Consensus 91 ~~ly~t~ePC~mC~~al~~---sgi~~Vvy 117 (146)
.+|| |..-|+.|..+... .||.-..+
T Consensus 3 v~ly-s~~~Cp~C~~ak~~L~~~~i~~~~~ 31 (72)
T cd03029 3 VSLF-TKPGCPFCARAKAALQENGISYEEI 31 (72)
T ss_pred EEEE-ECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 3566 45699999886554 45554333
No 78
>PLN00062 TATA-box-binding protein; Provisional
Probab=27.50 E-value=2.5e+02 Score=20.88 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=25.7
Q ss_pred EEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCC
Q 032165 34 VGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLS 80 (146)
Q Consensus 34 vGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~ 80 (146)
.-+.|...|+++.+|..... .-..|+++..+.++..|++
T Consensus 48 ~t~lIF~SGKiviTGaks~e--------~a~~a~~~~~~~L~~lg~~ 86 (179)
T PLN00062 48 TTALIFASGKMVCTGAKSEH--------DSKLAARKYARIIQKLGFP 86 (179)
T ss_pred EEEEEECCCeEEEEecCCHH--------HHHHHHHHHHHHHHHcCCC
Confidence 33444468999999987531 1235777777777777763
No 79
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=27.48 E-value=2e+02 Score=21.26 Aligned_cols=41 Identities=15% Similarity=0.407 Sum_probs=26.9
Q ss_pred cEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCCh
Q 032165 33 PVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQ 81 (146)
Q Consensus 33 pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~ 81 (146)
..-+.|...|+++.+|..... .-..|++++.+.++..|+..
T Consensus 47 k~t~lIF~SGKiv~tGaks~~--------~a~~a~~~~~~~L~~~g~~~ 87 (174)
T cd04518 47 KIAALIFRSGKMVCTGAKSVE--------DLHRAVKEIIKKLKDYGIKV 87 (174)
T ss_pred cEEEEEECCCeEEEEccCCHH--------HHHHHHHHHHHHHHhcCCCc
Confidence 344444468999999997531 22566777777777777543
No 80
>PF02600 DsbB: Disulfide bond formation protein DsbB; InterPro: IPR003752 Disulphide bonds contribute to folding, maturation, stability, and regulation of proteins, in particular those localized out of the cytosol. Oxidation of selected pairs of cysteines to disulphide in vivo requires cellular factors present in the bacterial periplasmic space or in the endoplasmic reticulum of eukaryotic cells [, ]. DsbB is a protein component of the pathway that leads to disulphide bond formation in periplasmic proteins of Escherichia coli and other bacteria. The DsbB protein oxidises the periplasmic protein DsbA which in turn oxidises cysteines in other periplasmic proteins in order to make disulphide bonds []. DsbB acts as a redox potential transducer across the cytoplasmic membrane. It is a membrane protein which spans the membrane four times with both the N- and C-termini of the protein are in the cytoplasm. Each of the periplasmic domains of the protein has two essential cysteines. The two cysteines in the first periplasmic domain are in a Cys-X-Y-Cys configuration that is characteristic of the active site of other proteins involved in disulphide bond formation, including DsbA and protein disulphide isomerase []. This entry also includes disulphide bond formation protein BdbC from Bacillus subtilis which functionally corresponds to the well-characterised E. coli DsbB []. ; GO: 0015035 protein disulfide oxidoreductase activity, 0016020 membrane; PDB: 2ZUP_B 3E9J_F 2ZUQ_D 2K74_A 2LEG_B 2HI7_B 2K73_A 2L0O_A 2L0M_A 2L0N_A ....
Probab=27.19 E-value=20 Score=25.55 Aligned_cols=11 Identities=27% Similarity=0.857 Sum_probs=5.6
Q ss_pred EcCCChHHHHH
Q 032165 95 VTCEPCIMCAA 105 (146)
Q Consensus 95 ~t~ePC~mC~~ 105 (146)
...+||++|..
T Consensus 29 lg~~PC~LC~~ 39 (156)
T PF02600_consen 29 LGLQPCPLCLY 39 (156)
T ss_dssp TTT---SHHCC
T ss_pred cCCCCcHHHHH
Confidence 35789999963
No 81
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=26.85 E-value=2.3e+02 Score=19.86 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=22.2
Q ss_pred ccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHH
Q 032165 60 RHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAA 105 (146)
Q Consensus 60 ~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~ 105 (146)
.+||..|+..+.+... .....++|+-..-+..|..
T Consensus 44 ~~aEL~Ai~~AL~~~~-----------~~~~v~I~tDS~yvi~~i~ 78 (150)
T PRK00203 44 NRMELMAAIEALEALK-----------EPCEVTLYTDSQYVRQGIT 78 (150)
T ss_pred HHHHHHHHHHHHHHcC-----------CCCeEEEEECHHHHHHHHH
Confidence 5899999999887632 1134567776555544433
No 82
>PRK04388 disulfide bond formation protein B; Provisional
Probab=26.46 E-value=30 Score=25.39 Aligned_cols=11 Identities=36% Similarity=0.923 Sum_probs=8.7
Q ss_pred EcCCChHHHHH
Q 032165 95 VTCEPCIMCAA 105 (146)
Q Consensus 95 ~t~ePC~mC~~ 105 (146)
...+||++|..
T Consensus 33 ~gl~PC~LCi~ 43 (172)
T PRK04388 33 LGLEPCPLCIF 43 (172)
T ss_pred cCCCCcHHHHH
Confidence 36789999965
No 83
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=23.57 E-value=31 Score=26.25 Aligned_cols=20 Identities=25% Similarity=0.680 Sum_probs=16.7
Q ss_pred ccCCCcEEEEcCCChHHHHH
Q 032165 86 EKFSKCCLYVTCEPCIMCAA 105 (146)
Q Consensus 86 ~~~~~~~ly~t~ePC~mC~~ 105 (146)
..|+.|--+++.+||.-|+.
T Consensus 55 ~~C~~C~~~te~d~C~ICsd 74 (198)
T COG0353 55 KHCSVCGNLTESDPCDICSD 74 (198)
T ss_pred ccccccCCcCCCCcCcCcCC
Confidence 45778888999999999984
No 84
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=23.11 E-value=3.1e+02 Score=20.17 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=26.4
Q ss_pred cEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCCh
Q 032165 33 PVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQ 81 (146)
Q Consensus 33 pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~ 81 (146)
..-+.|...|+++.+|..... .-..|+++..+.++..|+..
T Consensus 47 k~t~lIF~SGKiviTGaks~e--------~a~~a~~~i~~~L~~~g~~~ 87 (174)
T cd04516 47 KTTALIFSSGKMVCTGAKSED--------DSKLAARKYARIIQKLGFPA 87 (174)
T ss_pred cEEEEEECCCeEEEEecCCHH--------HHHHHHHHHHHHHHHcCCCC
Confidence 333444468999999987531 12447777777777777543
No 85
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=23.02 E-value=17 Score=21.54 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=8.7
Q ss_pred cCCChHHHHHHHH
Q 032165 96 TCEPCIMCAAALS 108 (146)
Q Consensus 96 t~ePC~mC~~al~ 108 (146)
.+-|||.|-.+-+
T Consensus 2 ~LkPCPFCG~~~~ 14 (61)
T PF14354_consen 2 ELKPCPFCGSADV 14 (61)
T ss_pred CCcCCCCCCCcce
Confidence 4679999943443
No 86
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=22.62 E-value=2.1e+02 Score=23.78 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=18.2
Q ss_pred cCCCCcEEEEEee-CCeEEEEeec
Q 032165 28 DSLEVPVGCVILE-DGKVIAAGRN 50 (146)
Q Consensus 28 ~~~~~pvGavIv~-~g~ii~~g~N 50 (146)
..+...|+++|++ +|++++...+
T Consensus 334 ~~~~~~v~vvl~d~~g~~l~~~~~ 357 (361)
T PRK00075 334 VGGSIEVGVVLFDRDGQILGRSGE 357 (361)
T ss_pred cCCCceEEEEEEeCCCCEEEECCc
Confidence 3568999999998 8999975544
No 87
>COG1495 DsbB Disulfide bond formation protein DsbB [Posttranslational modification, protein turnover, chaperones]
Probab=22.56 E-value=40 Score=24.80 Aligned_cols=10 Identities=40% Similarity=0.946 Sum_probs=8.0
Q ss_pred cCCChHHHHH
Q 032165 96 TCEPCIMCAA 105 (146)
Q Consensus 96 t~ePC~mC~~ 105 (146)
-.+||++|..
T Consensus 38 g~~PC~LC~~ 47 (170)
T COG1495 38 GLEPCPLCLY 47 (170)
T ss_pred CCCCcHHHHH
Confidence 5789999964
No 88
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=21.29 E-value=1.3e+02 Score=20.01 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=24.7
Q ss_pred CCcEEEEEeeCCeEEEEeecCCcCCC------CCCccHHHHHHHHHHHH
Q 032165 31 EVPVGCVILEDGKVIAAGRNRTTETR------NATRHAEMEAIDVLLDQ 73 (146)
Q Consensus 31 ~~pvGavIv~~g~ii~~g~N~~~~~~------~~~~HAE~~Ai~~~~~~ 73 (146)
+..|+|+|+++|+|+..-......-. .+.-=.+..|++.+.+.
T Consensus 2 ~~~v~~~i~~~~~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EE 50 (123)
T cd04672 2 KVDVRAAIFKDGKILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEE 50 (123)
T ss_pred cceEEEEEEECCEEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHH
Confidence 45788999999998754443211111 12234566677666655
No 89
>KOG1774 consensus Small nuclear ribonucleoprotein E [RNA processing and modification]
Probab=20.99 E-value=1e+02 Score=20.11 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhhc--CCCCcEEEEEeeCCe
Q 032165 12 TLAFMDLAIQQAKLALD--SLEVPVGCVILEDGK 43 (146)
Q Consensus 12 ~~~~m~~a~~~A~~a~~--~~~~pvGavIv~~g~ 43 (146)
.+.||...++.|.+-.. ..+.+.|-.+++.+.
T Consensus 46 FDEyMNvVlD~aeev~~k~~~rk~lGRilLKGDn 79 (88)
T KOG1774|consen 46 FDEYMNLVLDDAEEVHSKTKSRKELGRILLKGDN 79 (88)
T ss_pred hHHhhhhhhcchhhccccccCCCccccEEEcCCc
Confidence 57899999999988543 234577777666444
Done!