Query 032165
Match_columns 146
No_of_seqs 135 out of 1030
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 16:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh1_A TRNA-specific adenosine 100.0 2.8E-39 9.7E-44 241.3 12.8 133 7-142 21-153 (189)
2 2nx8_A TRNA-specific adenosine 100.0 1.7E-38 6E-43 235.4 12.9 123 10-143 14-136 (179)
3 2a8n_A Cytidine and deoxycytid 100.0 2.2E-38 7.5E-43 227.5 12.6 122 11-143 3-124 (144)
4 1z3a_A TRNA-specific adenosine 100.0 4.3E-38 1.5E-42 231.2 13.7 124 9-143 6-129 (168)
5 2b3j_A TRNA adenosine deaminas 100.0 8.4E-38 2.9E-42 227.9 13.4 123 10-143 5-127 (159)
6 1wwr_A TRNA adenosine deaminas 100.0 2E-37 6.7E-42 228.2 13.1 123 10-143 21-143 (171)
7 1wkq_A Guanine deaminase; doma 100.0 1.9E-37 6.4E-42 226.9 8.7 117 10-135 9-130 (164)
8 2g84_A Cytidine and deoxycytid 100.0 2.2E-35 7.6E-40 221.7 12.1 117 8-128 24-142 (197)
9 1p6o_A Cytosine deaminase; hyd 100.0 4.4E-35 1.5E-39 213.8 10.0 109 7-125 9-119 (161)
10 1vq2_A DCMP deaminase, deoxycy 100.0 3.2E-33 1.1E-37 209.3 13.1 105 11-127 2-159 (193)
11 2hvw_A Deoxycytidylate deamina 100.0 5.1E-33 1.7E-37 206.7 11.4 104 9-124 39-157 (184)
12 2w4l_A DCMP deaminse, deoxycyt 100.0 2.7E-31 9.2E-36 196.6 11.7 102 5-120 6-127 (178)
13 2b3z_A Riboflavin biosynthesis 100.0 1.4E-29 4.9E-34 206.0 9.4 108 10-135 12-127 (373)
14 2hxv_A Diaminohydroxyphosphori 100.0 5E-29 1.7E-33 202.0 10.9 106 12-133 14-127 (360)
15 2g6v_A Riboflavin biosynthesis 100.0 5.4E-29 1.9E-33 204.3 9.4 101 10-128 28-136 (402)
16 3g8q_A Predicted RNA-binding p 99.9 1.3E-24 4.3E-29 164.9 10.3 79 21-122 11-89 (278)
17 1uwz_A Cytidine deaminase; CDD 99.8 1.6E-19 5.5E-24 128.1 10.1 90 11-111 2-97 (136)
18 2fr5_A Cytidine deaminase; tet 99.8 8.4E-19 2.9E-23 125.7 10.4 94 7-111 10-110 (146)
19 2nyt_A Probable C->U-editing e 99.8 1.3E-18 4.4E-23 129.6 10.1 80 31-122 32-121 (190)
20 2z3g_A Blasticidin-S deaminase 99.8 1.9E-17 6.4E-22 116.6 12.4 93 8-113 3-101 (130)
21 3b8f_A Putative blasticidin S 99.6 6.1E-15 2.1E-19 105.1 9.5 96 11-118 3-107 (142)
22 1r5t_A Cytidine deaminase; zin 99.5 7.1E-14 2.4E-18 99.6 10.2 93 8-111 7-107 (142)
23 3r2n_A Cytidine deaminase; str 99.5 5.1E-14 1.7E-18 99.8 9.1 96 10-118 8-111 (138)
24 2d30_A Cytidine deaminase; pur 99.5 1.1E-13 3.9E-18 98.3 9.5 90 11-111 11-106 (141)
25 3mpz_A Cytidine deaminase; ssg 99.4 8.8E-13 3E-17 94.4 8.0 97 10-117 23-125 (150)
26 1ctt_A Cytidine deaminase; hyd 99.3 3.2E-11 1.1E-15 95.0 11.3 93 11-112 187-285 (294)
27 3dmo_A Cytidine deaminase; str 99.2 3.9E-11 1.3E-15 84.8 9.0 93 10-111 9-107 (138)
28 3oj6_A Blasticidin-S deaminase 99.2 2.9E-10 9.8E-15 82.0 11.9 98 7-117 26-130 (158)
29 1ctt_A Cytidine deaminase; hyd 99.1 1.5E-10 5.2E-15 91.1 8.8 87 12-111 49-140 (294)
30 4eg2_A Cytidine deaminase; UMP 98.8 3.1E-08 1E-12 78.0 8.7 81 19-112 60-144 (298)
31 4eg2_A Cytidine deaminase; UMP 98.7 2.9E-07 9.8E-12 72.4 11.3 91 12-111 192-288 (298)
32 3v4k_A DNA DC->DU-editing enzy 95.8 0.011 3.7E-07 43.9 4.8 44 59-110 78-121 (203)
33 3vow_A Probable DNA DC->DU-edi 95.5 0.019 6.4E-07 42.2 4.8 56 57-120 62-122 (190)
34 3bh1_A UPF0371 protein DIP2346 44.6 64 0.0022 26.6 6.6 87 16-113 349-483 (507)
35 4ehi_A Bifunctional purine bio 42.7 94 0.0032 26.1 7.5 65 37-117 438-503 (534)
36 2fb5_A Hypothetical membrane s 41.5 14 0.00049 27.1 2.2 33 35-67 136-174 (205)
37 3zzm_A Bifunctional purine bio 39.5 1.4E+02 0.0048 25.0 8.1 63 36-117 429-492 (523)
38 2ehg_A Ribonuclease HI; RNAse 38.2 85 0.0029 20.7 6.6 42 35-76 22-65 (149)
39 3vdp_A Recombination protein R 34.9 26 0.00088 25.9 2.7 20 86-105 69-88 (212)
40 1vdd_A Recombination protein R 32.5 30 0.001 25.8 2.8 20 86-105 55-74 (228)
41 3p1g_A Xenotropic murine leuke 32.0 1E+02 0.0036 21.2 5.5 56 33-103 40-95 (165)
42 1ais_A TBP, protein (tata-bind 31.5 95 0.0033 22.0 5.3 41 32-80 53-93 (182)
43 1nm3_A Protein HI0572; hybrid, 30.7 1.4E+02 0.0049 21.1 8.1 70 33-117 126-200 (241)
44 2z8u_A Tata-box-binding protei 27.2 1.4E+02 0.005 21.2 5.6 41 32-80 57-97 (188)
45 2zuq_A Disulfide bond formatio 25.6 13 0.00045 26.3 -0.2 10 96-105 37-46 (176)
46 1zcz_A Bifunctional purine bio 25.5 2.8E+02 0.0097 22.8 7.9 62 37-117 371-433 (464)
47 3eik_A Tata-box-binding protei 25.0 1.6E+02 0.0055 21.6 5.6 41 32-80 87-127 (218)
48 1mp9_A Tata-binding protein; t 24.8 1.4E+02 0.0046 21.6 5.1 41 32-80 57-97 (198)
49 1ytb_A Protein (tata binding p 24.3 1.5E+02 0.005 21.0 5.2 40 32-79 49-88 (180)
50 3mtw_A L-arginine carboxypepti 23.0 62 0.0021 23.3 3.1 18 35-52 23-40 (403)
51 1zbf_A Ribonuclease H-related 21.2 94 0.0032 20.9 3.5 41 33-76 28-68 (142)
52 3hst_B Protein RV2228C/MT2287; 20.1 1.4E+02 0.0047 19.1 4.1 43 32-76 19-63 (141)
No 1
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.8e-39 Score=241.33 Aligned_cols=133 Identities=48% Similarity=0.810 Sum_probs=114.1
Q ss_pred CCChhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhc
Q 032165 7 EWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (146)
Q Consensus 7 ~~~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (146)
..+.++++||++|+++|+++...+++|||||||++|+||++|+|.++...+++.|||++||+++.+.....+.+. .+
T Consensus 21 ~~~~~d~~~M~~Al~lA~~a~~~~~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~~~~---~~ 97 (189)
T 3dh1_A 21 QSMEETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSP---SE 97 (189)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCH---HH
T ss_pred CChHHHHHHHHHHHHHHHHhhhCCCCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcCccc---cc
Confidence 345668899999999999998888999999999999999999998877789999999999999987644333221 23
Q ss_pred cCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCccccceeeecccccccCC
Q 032165 87 KFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLN 142 (146)
Q Consensus 87 ~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~~~~~~ln 142 (146)
.+.++|||||+|||+||+++|+|+||+||||+..+|+.|++++.+.++.......|
T Consensus 98 ~l~g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~~~l~~~g 153 (189)
T 3dh1_A 98 VFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTG 153 (189)
T ss_dssp HHTTEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSS
T ss_pred ccCCeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCcccccccccchhhHHHHcC
Confidence 57899999999999999999999999999999999999999998888764444444
No 2
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=100.00 E-value=1.7e-38 Score=235.36 Aligned_cols=123 Identities=36% Similarity=0.654 Sum_probs=111.9
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCC
Q 032165 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (146)
Q Consensus 10 ~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (146)
+++++||++|+++|+++...+++|||||||++|+||+.|+|.+....+++.|||++||+++.+++. .+.+.
T Consensus 14 ~~d~~~M~~Al~~A~~a~~~g~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~---------~~~l~ 84 (179)
T 2nx8_A 14 EEQTYFMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEG---------NWRLL 84 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHT---------SSCCT
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcC---------CCccc
Confidence 568899999999999998888999999999999999999999888889999999999999987743 35688
Q ss_pred CcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCccccceeeecccccccCCC
Q 032165 90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNR 143 (146)
Q Consensus 90 ~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~~~~~~ln~ 143 (146)
++|||+|+|||+||+++|+|+||+||||+..+|+.|+.|+.+.++.. ..+||
T Consensus 85 g~tlYvTlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~~~~~l~~--~~~~~ 136 (179)
T 2nx8_A 85 DTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTD--ERLNH 136 (179)
T ss_dssp TEEEEEEECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGC--TTTTC
T ss_pred ceEEEECCCCcHHHHHHHHHhCCCeEEEEEeCCCCcccccHHHHhhc--cccCC
Confidence 99999999999999999999999999999999999999998998773 44554
No 3
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=100.00 E-value=2.2e-38 Score=227.51 Aligned_cols=122 Identities=38% Similarity=0.594 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCC
Q 032165 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (146)
Q Consensus 11 ~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (146)
+|++||++|+++|+++...+++|||||||++|+||++|+|.++...+++.|||++||+++.+++. .+.+.+
T Consensus 3 ~d~~~m~~A~~~A~~a~~~~~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~---------~~~~~~ 73 (144)
T 2a8n_A 3 ERTHFMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALG---------QERLPG 73 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHT---------CSCCTT
T ss_pred hHHHHHHHHHHHHHHhhcCCCCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcC---------CCccCC
Confidence 57899999999999998888999999999999999999999988899999999999999987642 356889
Q ss_pred cEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCccccceeeecccccccCCC
Q 032165 91 CCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNR 143 (146)
Q Consensus 91 ~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~~~~~~ln~ 143 (146)
+++|+|+|||+||+++|+|+||+||||+..+|+.|++++.+.++.. ..+||
T Consensus 74 ~tly~T~ePC~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~~~~--~~~~~ 124 (144)
T 2a8n_A 74 ADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQ--PTCHH 124 (144)
T ss_dssp CEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGS--TTCCC
T ss_pred eEEEECCCChHHHHHHHHHHCCCEEEEeecCCCccccchHHHHHhc--cccCC
Confidence 9999999999999999999999999999999999999988888774 44444
No 4
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=100.00 E-value=4.3e-38 Score=231.21 Aligned_cols=124 Identities=34% Similarity=0.481 Sum_probs=111.9
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccC
Q 032165 9 SPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (146)
Q Consensus 9 ~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (146)
++++++||++|+++|+++...+++|||||||++|+||+.|+|.++...+++.|||++||+++.+++. .+.+
T Consensus 6 ~~~d~~~M~~A~~~A~~a~~~~~~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~---------~~~l 76 (168)
T 1z3a_A 6 EFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQ---------NYRL 76 (168)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHT---------SSCC
T ss_pred chHHHHHHHHHHHHHHHhhhcCCCcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcC---------CCcc
Confidence 3458899999999999998878999999999999999999999888889999999999999987742 3568
Q ss_pred CCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCccccceeeecccccccCCC
Q 032165 89 SKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNR 143 (146)
Q Consensus 89 ~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~~~~~~ln~ 143 (146)
.+++||+|+|||+||+++|+|+||+||||+..+|+.|+.|+.+.++. ...+||
T Consensus 77 ~~~tlYvTlEPC~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~l~--~~~~~~ 129 (168)
T 1z3a_A 77 IDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLH--HPGMNH 129 (168)
T ss_dssp TTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTT--CTTCSS
T ss_pred cccEEEEcCCCcHHHHHHHHHHCcCEEEEEecCCCccccchhHHHhh--ccccCC
Confidence 89999999999999999999999999999999999999999989877 444554
No 5
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=100.00 E-value=8.4e-38 Score=227.86 Aligned_cols=123 Identities=37% Similarity=0.567 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCC
Q 032165 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (146)
Q Consensus 10 ~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (146)
+++++||++|+++|+++...+++|||||||++|+||++|+|.++...+++.|||++||+++.+++. .+.+.
T Consensus 5 ~~d~~~m~~A~~~A~~a~~~~~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~---------~~~l~ 75 (159)
T 2b3j_A 5 TNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLG---------SWRLE 75 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHT---------SSCCT
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcC---------CCCcc
Confidence 367899999999999998888999999999999999999999888889999999999999987643 35688
Q ss_pred CcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCccccceeeecccccccCCC
Q 032165 90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNR 143 (146)
Q Consensus 90 ~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~~~~~~ln~ 143 (146)
+++||+|+|||+||+++|+|+||+||||+..+|+.|+.++.+.++.. ..+||
T Consensus 76 ~~tlyvT~EPC~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~~l~~--~~~~~ 127 (159)
T 2b3j_A 76 GCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQ--SNFNH 127 (159)
T ss_dssp TEEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSC--TTSSC
T ss_pred eeEEEECCCCcHHHHHHHHHhCCCeEEEEeeCCCcccccHHHHHHhc--cccCC
Confidence 99999999999999999999999999999999999999998888773 44554
No 6
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=100.00 E-value=2e-37 Score=228.18 Aligned_cols=123 Identities=35% Similarity=0.593 Sum_probs=110.8
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCC
Q 032165 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (146)
Q Consensus 10 ~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (146)
+++++||++|+++|+++...+++|||||||++|+||++|+|.++...+++.|||++||+++.+++. .+.+.
T Consensus 21 m~~~~~M~~A~~~A~~a~~~~~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g---------~~~l~ 91 (171)
T 1wwr_A 21 MGKEYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLN---------TKYLE 91 (171)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHT---------CSCCT
T ss_pred hhHHHHHHHHHHHHHhcccCCCCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcC---------CCccC
Confidence 357899999999999998888999999999999999999999988899999999999999987642 35688
Q ss_pred CcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCccccceeeecccccccCCC
Q 032165 90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNR 143 (146)
Q Consensus 90 ~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~~~~~~ln~ 143 (146)
+++||+|+|||+||+++|+|+||+||||+..+|+.|+.++.+.++.. ..+||
T Consensus 92 ~~tlYvT~EPC~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~l~~--~~~~~ 143 (171)
T 1wwr_A 92 GCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDE--PTLNH 143 (171)
T ss_dssp TEEEEESSCCBHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGC--TTCSS
T ss_pred ceEEEECCCChHHHHHHHHHHCCCEEEEEecCCCccccchHHHHHhc--cccCC
Confidence 99999999999999999999999999999999999999998888773 34444
No 7
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=100.00 E-value=1.9e-37 Score=226.92 Aligned_cols=117 Identities=31% Similarity=0.492 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHHHHHhhcCC-CCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccC
Q 032165 10 PDTLAFMDLAIQQAKLALDSL-EVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (146)
Q Consensus 10 ~~~~~~m~~a~~~A~~a~~~~-~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (146)
..++.||++|+++|+++...+ ++|||||||++|+||++|+|.+....+++.|||++||+++.+++. .+.+
T Consensus 9 ~~~~~~M~~Al~~A~~a~~~g~~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~---------~~~l 79 (164)
T 1wkq_A 9 MNHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLG---------AYQL 79 (164)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHT---------SSSC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcC---------CCCc
Confidence 457889999999999998877 999999999999999999999888889999999999999987643 3568
Q ss_pred CCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCcccc----ceeeecc
Q 032165 89 SKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCG----SILSLHL 135 (146)
Q Consensus 89 ~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~----~~~~~~~ 135 (146)
.+++||+|+|||+||+++|+|+||+||||+..+|+.|+.| +.+.++.
T Consensus 80 ~g~tlYvT~EPC~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~ 130 (164)
T 1wkq_A 80 DDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEID 130 (164)
T ss_dssp TTEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHT
T ss_pred CceEEEEeCCChHHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhc
Confidence 9999999999999999999999999999999999998888 6666654
No 8
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=100.00 E-value=2.2e-35 Score=221.67 Aligned_cols=117 Identities=26% Similarity=0.446 Sum_probs=101.1
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-C-CeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhh
Q 032165 8 WSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-D-GKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIA 85 (146)
Q Consensus 8 ~~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~-~-g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~ 85 (146)
..+.+++||++|+++|+++...++.|||||||+ + |+||++|+|+++...+++.|||++||+++.+++....++ +
T Consensus 24 ~~~~d~~~M~~Al~~A~~a~~~~~~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~L~----~ 99 (197)
T 2g84_A 24 VLAAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLS----A 99 (197)
T ss_dssp BCCSHHHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTT----C
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHcCCcccc----c
Confidence 345688999999999999986568999999997 7 999999999998889999999999999998874322221 1
Q ss_pred ccCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCcccc
Q 032165 86 EKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCG 128 (146)
Q Consensus 86 ~~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~ 128 (146)
..++++|||||+|||+||+++|+|+||+||||+..+|+.|+.|
T Consensus 100 ~~~~g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G 142 (197)
T 2g84_A 100 DGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIG 142 (197)
T ss_dssp TTSCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTT
T ss_pred cCcCCEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccC
Confidence 1357899999999999999999999999999999999887776
No 9
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=100.00 E-value=4.4e-35 Score=213.84 Aligned_cols=109 Identities=27% Similarity=0.377 Sum_probs=97.6
Q ss_pred CCChhHHHHHHHHHHHHHHhhcCCCCcEEEEEe--eCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhh
Q 032165 7 EWSPDTLAFMDLAIQQAKLALDSLEVPVGCVIL--EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEI 84 (146)
Q Consensus 7 ~~~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv--~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~ 84 (146)
..++.+++||++|+++|+++...+++||||||| ++|+||++|+|.++...+++.|||++||+++.+. .
T Consensus 9 m~~~~d~~~M~~A~~~A~~a~~~~~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~----------~ 78 (161)
T 1p6o_A 9 MASKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRL----------E 78 (161)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSC----------C
T ss_pred CCCHHHHHHHHHHHHHHHhhhccCCCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHh----------C
Confidence 445678999999999999998878999999999 6999999999998877899999999999998653 1
Q ss_pred hccCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCc
Q 032165 85 AEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFG 125 (146)
Q Consensus 85 ~~~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g 125 (146)
...+.+++||+|+|||+||+++|+|+||+||||+..+|..|
T Consensus 79 ~~~~~~~tlYvT~EPC~mC~~ai~~agi~rVv~g~~~~~~g 119 (161)
T 1p6o_A 79 GKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKS 119 (161)
T ss_dssp HHHHTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSSCCC
T ss_pred CccccccccccCCCCCHHHHHHHHHhCCCEEEEEecCCCCc
Confidence 23578999999999999999999999999999999888765
No 10
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=100.00 E-value=3.2e-33 Score=209.32 Aligned_cols=105 Identities=26% Similarity=0.386 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCC----------------------------------
Q 032165 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETR---------------------------------- 56 (146)
Q Consensus 11 ~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~---------------------------------- 56 (146)
++++||++|+++|+++. .+++|||||||++|+||++|+|.++++.
T Consensus 2 ~d~~fM~~A~~~A~rs~-~~~~~VGAVIV~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (193)
T 1vq2_A 2 KASTVLQIAYLVSQESK-CCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGS 80 (193)
T ss_dssp CHHHHHHHHHHHHTTCC-CSSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC------------------
T ss_pred CHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEeCCCCCCCCCcchhhccccccccccccccccccccccccccc
Confidence 47899999999999996 5799999999999999999999988642
Q ss_pred -------------------CCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHHHhCCCEEEE
Q 032165 57 -------------------NATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYY 117 (146)
Q Consensus 57 -------------------~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy 117 (146)
+++.|||++||.++.++ +..+.+++||||+|||+||+++|+++||+||||
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~-----------g~~~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy 149 (193)
T 1vq2_A 81 TDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAEN-----------GSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVY 149 (193)
T ss_dssp --CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHH-----------TCCCTTCEEEEEECCCHHHHHHHHHHTCCEEEE
T ss_pred ccccccchhhccccccccCCCCCCHHHHHHHHHHhc-----------CCCcCCeEEEEeCCCcHHHHHHHHHhCCCEEEE
Confidence 24789999999999876 356889999999999999999999999999999
Q ss_pred eeeCCCCccc
Q 032165 118 GCANEKFGGC 127 (146)
Q Consensus 118 ~~~~~~~g~~ 127 (146)
+.++|+.++.
T Consensus 150 ~~~~~~~~~~ 159 (193)
T 1vq2_A 150 CETYDKNKPG 159 (193)
T ss_dssp EECCTTCCTT
T ss_pred ecCCCCcchH
Confidence 9988876644
No 11
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=100.00 E-value=5.1e-33 Score=206.66 Aligned_cols=104 Identities=29% Similarity=0.334 Sum_probs=93.1
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCC---------------CCCccHHHHHHHHHHHH
Q 032165 9 SPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETR---------------NATRHAEMEAIDVLLDQ 73 (146)
Q Consensus 9 ~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~---------------~~~~HAE~~Ai~~~~~~ 73 (146)
++++++||++|+++|+++. .+++|||||||++|+||++|+|.++.+. +++.|||++||.++.++
T Consensus 39 ~~~de~~M~~A~~~A~~s~-~~~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~ 117 (184)
T 2hvw_A 39 LSWQDYFMANAELISKRST-CNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKE 117 (184)
T ss_dssp CCHHHHHHHHHHHHGGGCC-CTTCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHc
Confidence 4578899999999999986 5899999999999999999999876542 67999999999999876
Q ss_pred HhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCC
Q 032165 74 WQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKF 124 (146)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~ 124 (146)
+..+.+++||+|+|||+||+++|+|+||+||||+..++..
T Consensus 118 -----------g~~l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~~ 157 (184)
T 2hvw_A 118 -----------GISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIH 157 (184)
T ss_dssp -----------TCCCTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSCC
T ss_pred -----------CCCceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3568999999999999999999999999999999987654
No 12
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=196.59 Aligned_cols=102 Identities=28% Similarity=0.412 Sum_probs=86.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCCCcEEEEEe-eCCeEEEEeecCCcCC------------CC-------CCccHHH
Q 032165 5 GEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVIL-EDGKVIAAGRNRTTET------------RN-------ATRHAEM 64 (146)
Q Consensus 5 ~~~~~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv-~~g~ii~~g~N~~~~~------------~~-------~~~HAE~ 64 (146)
.+...+.+++||++|+++|+++.. +++||||||| ++|+||++|+|.++.+ ++ .+.|||+
T Consensus 6 ~~~~~~~d~~~M~~A~~~A~~s~~-p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~ 84 (178)
T 2w4l_A 6 RDDYLEWPEYFMAVAFLSAQRSKD-PNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAEL 84 (178)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCCC-SSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHH
T ss_pred cccccHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHH
Confidence 344556789999999999999864 6999999999 5999999999988643 23 3799999
Q ss_pred HHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeee
Q 032165 65 EAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCA 120 (146)
Q Consensus 65 ~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~ 120 (146)
+||.++. +..+.+++||+|+|||.||+++|+++||+||||+..
T Consensus 85 ~AI~~a~-------------g~~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~ 127 (178)
T 2w4l_A 85 NAIMNKN-------------LTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSD 127 (178)
T ss_dssp HHHHC-----------------CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHhc-------------CCCccccEEEEeCCcHHHHHHHHHHHCCCEEEEEec
Confidence 9999874 235789999999999999999999999999999986
No 13
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.96 E-value=1.4e-29 Score=206.00 Aligned_cols=108 Identities=28% Similarity=0.376 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHHHHhhc--CCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhcc
Q 032165 10 PDTLAFMDLAIQQAKLALD--SLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (146)
Q Consensus 10 ~~~~~~m~~a~~~A~~a~~--~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (146)
+.|++||++|+++|+++.. .+++|||||||++|+||++|+|.. .++.|||++||+++.+.
T Consensus 12 ~~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~Ai~~a~~~-------------- 73 (373)
T 2b3z_A 12 SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLK----YGEAHAEVHAIHMAGAH-------------- 73 (373)
T ss_dssp -CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCS----TTSCCHHHHHHHHHGGG--------------
T ss_pred chHHHHHHHHHHHHHhhCcccCCCCcEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHHhhHh--------------
Confidence 4578999999999999864 589999999999999999999984 57999999999998543
Q ss_pred CCCcEEEEcCCCh------HHHHHHHHHhCCCEEEEeeeCCCCccccceeeecc
Q 032165 88 FSKCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHL 135 (146)
Q Consensus 88 ~~~~~ly~t~ePC------~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~ 135 (146)
+.++|||||+||| +||+++|+++||+||||+..+|+.+..+..+.++.
T Consensus 74 ~~g~tlyvTlePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~ 127 (373)
T 2b3z_A 74 AEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMK 127 (373)
T ss_dssp GTTCEEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHH
T ss_pred cCCeEEEEeCCCccCcCCChHHHHHHHHhCCCEEEEEecccchhhhhHHHHHHH
Confidence 6799999999999 79999999999999999999888776665444443
No 14
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.96 E-value=5e-29 Score=201.96 Aligned_cols=106 Identities=33% Similarity=0.434 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHhhc--CCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCC
Q 032165 12 TLAFMDLAIQQAKLALD--SLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (146)
Q Consensus 12 ~~~~m~~a~~~A~~a~~--~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (146)
...||++|+++|+++.. .+++|||||||++|+||++|+|.. .++.|||++||+++.+. +..+.
T Consensus 14 ~~~~m~~al~lA~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~Ai~~a~~~-----------~~~~~ 78 (360)
T 2hxv_A 14 YETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPY----FGGPHAERMAIESARKK-----------GEDLR 78 (360)
T ss_dssp HHHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCS----TTSCCHHHHHHHHHHHT-----------TCCCT
T ss_pred HHHHHHHHHHHHHHhccccCCCCCEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHHHHhc-----------CCCcC
Confidence 35799999999999864 479999999999999999999984 57999999999998643 34688
Q ss_pred CcEEEEcCCCh------HHHHHHHHHhCCCEEEEeeeCCCCccccceeee
Q 032165 90 KCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSL 133 (146)
Q Consensus 90 ~~~ly~t~ePC------~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~ 133 (146)
++|||||+||| +||+++|+++||+||||+..+|+. ..+..+.+
T Consensus 79 g~tlYvTlEPC~h~g~t~~C~~ai~~agi~rVv~~~~d~~~-~~g~g~~~ 127 (360)
T 2hxv_A 79 GATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEK 127 (360)
T ss_dssp TCEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECCCCG-GGCCHHHH
T ss_pred CcEEEEecCcccccCCCHHHHHHHHHhCCCEEEEEecCchh-hhhhHHHH
Confidence 99999999999 799999999999999999988876 44433333
No 15
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.95 E-value=5.4e-29 Score=204.30 Aligned_cols=101 Identities=27% Similarity=0.427 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHHHhh--cCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhcc
Q 032165 10 PDTLAFMDLAIQQAKLAL--DSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (146)
Q Consensus 10 ~~~~~~m~~a~~~A~~a~--~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (146)
+.+++||++|+++|+++. ..+++|||||||++|+||++|+|.. .++.|||++||+++.++
T Consensus 28 ~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~g~~HAE~~Ai~~a~~~-------------- 89 (402)
T 2g6v_A 28 GQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQR----AGEPHAEVHALRMAGEK-------------- 89 (402)
T ss_dssp HHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECCC----TTSCCHHHHHHHHHGGG--------------
T ss_pred HHHHHHHHHHHHHHHhhCccCCCCCCEEEEEEECCEEEEEEeCCC----CCccHHHHHHHHHhhHh--------------
Confidence 458899999999999986 4589999999999999999999984 57999999999998543
Q ss_pred CCCcEEEEcCCCh------HHHHHHHHHhCCCEEEEeeeCCCCcccc
Q 032165 88 FSKCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCG 128 (146)
Q Consensus 88 ~~~~~ly~t~ePC------~mC~~al~~sgi~~Vvy~~~~~~~g~~~ 128 (146)
+.++|||||+||| +||+++|+|+||+||||+..+|..+..|
T Consensus 90 ~~g~tlyvt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g 136 (402)
T 2g6v_A 90 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAG 136 (402)
T ss_dssp GGSSCEEESSCCC-------CCHHHHHHTTCSCEEESSCCCSCSSST
T ss_pred cCCeEEEEeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCccccc
Confidence 6799999999999 6999999999999999999888765443
No 16
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.91 E-value=1.3e-24 Score=164.93 Aligned_cols=79 Identities=24% Similarity=0.431 Sum_probs=68.5
Q ss_pred HHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCCh
Q 032165 21 QQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPC 100 (146)
Q Consensus 21 ~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC 100 (146)
++++.....+++|||||||++|+||+.|. . ++.|||++||+ . ..+.+++||+|+|||
T Consensus 11 d~~k~~~t~PNPpVGAVIVkDGeIIA~Ge------~-gTaHAEInAIr----g------------~~L~GaTLYVTLEPC 67 (278)
T 3g8q_A 11 DVKKILNEIPKRTVTAALLEGGEIVAVEE------A-DDEHAERKLVR----R------------HDVEGKVVFVTARPC 67 (278)
T ss_dssp EHHHHHHHSCCSSCEEEEEETTEEEEEEE------C-SSSCHHHHHHH----H------------SCCTTCEEEESSCCC
T ss_pred hHhHHhccCCCCCEEEEEEECCEEEEecC------C-CCCCHHHHHhC----C------------CCCCCcEEEEeCCch
Confidence 44555556799999999999999999992 1 89999999996 1 347899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeeeCC
Q 032165 101 IMCAAALSILGIKEVYYGCANE 122 (146)
Q Consensus 101 ~mC~~al~~sgi~~Vvy~~~~~ 122 (146)
+||+++|+|+||+||||+..+.
T Consensus 68 ~MCAgAII~AGIkRVVYGa~~~ 89 (278)
T 3g8q_A 68 LYCARELAEAGVAGVVYLGRGR 89 (278)
T ss_dssp HHHHHHHHTTTCCEEEEEECSS
T ss_pred HHHHHHHHHhCCCEEEEEecCC
Confidence 9999999999999999998764
No 17
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=99.81 E-value=1.6e-19 Score=128.09 Aligned_cols=90 Identities=23% Similarity=0.366 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccC
Q 032165 11 DTLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (146)
Q Consensus 11 ~~~~~m~~a~~~A~~a~~~-~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (146)
+++++|+.|++++++++.. +++||||+|+. +|+|+ +|+|.++...+++.|||+.||.++... | ...+
T Consensus 2 ~~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~~A~~~----G------~~~~ 70 (136)
T 1uwz_A 2 NRQELITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSE----G------DTEF 70 (136)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHH----T------CCCE
T ss_pred CHHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHHHHHHC----C------CCCe
Confidence 3678999999999999886 89999999996 89988 899999999999999999999999876 1 3457
Q ss_pred CCcEEEEc----CCChHHHHHHHHHhC
Q 032165 89 SKCCLYVT----CEPCIMCAAALSILG 111 (146)
Q Consensus 89 ~~~~ly~t----~ePC~mC~~al~~sg 111 (146)
..+++|++ .+||.||+++|.+.+
T Consensus 71 ~~~~l~~~~~~~~~PCg~Crq~l~e~~ 97 (136)
T 1uwz_A 71 QMLAVAADTPGPVSPCGACRQVISELC 97 (136)
T ss_dssp EEEEEEESCSSSCCCCHHHHHHHHHHS
T ss_pred EEEEEEeCCCCccCHHHHHHHHHHHcC
Confidence 78899985 899999999999987
No 18
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=99.78 E-value=8.4e-19 Score=125.65 Aligned_cols=94 Identities=21% Similarity=0.314 Sum_probs=80.8
Q ss_pred CCChhHHHHHHHHHHHHHHhhcC-CCCcEEEEEe-eCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhh
Q 032165 7 EWSPDTLAFMDLAIQQAKLALDS-LEVPVGCVIL-EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEI 84 (146)
Q Consensus 7 ~~~~~~~~~m~~a~~~A~~a~~~-~~~pvGavIv-~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~ 84 (146)
....+++++|++|++++++++.. +++||||+|+ ++|+|+ +|+|.++...+++.|||++||.++... |
T Consensus 10 ~~~~~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~~A~~~----G------ 78 (146)
T 2fr5_A 10 VEPEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISE----G------ 78 (146)
T ss_dssp -CCHHHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT----T------
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHHHHHhC----C------
Confidence 34566778999999999998874 6999999999 589888 799999988889999999999999865 1
Q ss_pred hccCCCcEEEEc-----CCChHHHHHHHHHhC
Q 032165 85 AEKFSKCCLYVT-----CEPCIMCAAALSILG 111 (146)
Q Consensus 85 ~~~~~~~~ly~t-----~ePC~mC~~al~~sg 111 (146)
...+....+|++ .+||.||+++|.+.+
T Consensus 79 ~~~l~~i~v~~~~~~~~~~PCG~Crq~l~E~~ 110 (146)
T 2fr5_A 79 YKDFRAIAISSDLQEEFISPCGACRQVMREFG 110 (146)
T ss_dssp CCCEEEEEEEESCSSSCCCCCHHHHHHHHHTC
T ss_pred CCceEEEEEEeCCCCcccCCCHHHHHHHHHhC
Confidence 345678889988 899999999999997
No 19
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.77 E-value=1.3e-18 Score=129.55 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=65.7
Q ss_pred CCcEEEEEee--C---CeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHH
Q 032165 31 EVPVGCVILE--D---GKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAA 105 (146)
Q Consensus 31 ~~pvGavIv~--~---g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~ 105 (146)
+..+.|..|+ + +.+|+.|+|.. .+++.|||++||+++.+++ + .....++|+|||+|||+||+.
T Consensus 32 ~~tyLcy~v~~~~~~~~~ii~~G~~~~---~~~~~HAE~~Ai~~a~~~l---~------~~~~~g~TlYvTlePC~~Ca~ 99 (190)
T 2nyt_A 32 NKTFLCYVVEAQGKGGQVQASRGYLED---EHAAAHAEEAFFNTILPAF---D------PALRYNVTWYVSSSPCAACAD 99 (190)
T ss_pred CceEEEEEEEecCCCCCCeEEEEECCC---CCCCcCHHHHHHHHHHHhc---C------ccccCCeEEEEEcChHHHHHH
Confidence 6778899886 2 56999999984 3689999999999987542 1 112249999999999999999
Q ss_pred HHHHh-----CCCEEEEeeeCC
Q 032165 106 ALSIL-----GIKEVYYGCANE 122 (146)
Q Consensus 106 al~~s-----gi~~Vvy~~~~~ 122 (146)
+|+++ ||++|||+..++
T Consensus 100 aIi~al~~~~gI~rVV~~~~d~ 121 (190)
T 2nyt_A 100 RIIKTLSKTKNLRLLILVGRLF 121 (190)
T ss_pred HHHHhhhhcCCccEEEEEeecC
Confidence 99999 999999987654
No 20
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=99.75 E-value=1.9e-17 Score=116.58 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=78.8
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhc
Q 032165 8 WSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (146)
Q Consensus 8 ~~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (146)
.+.+++++|+.|++++++++..+++||||+|+. ||+|+ +|+|.+ ..+++.|||+.||.++... | ..
T Consensus 3 l~~~~~~L~~~A~~a~~~ay~~s~f~VGAal~~~dG~i~-~G~NvE--~~~~t~cAE~~Ai~~A~~~----G------~~ 69 (130)
T 2z3g_A 3 LSQEESTLIERATATINSIPISEDYSVASAALSSDGRIF-TGVNVY--HFTGGPCAELVVLGTAAAA----A------AG 69 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCCSSSCEEEEEEETTSCEE-EEECCC--CTTTCCCHHHHHHHHHHHT----T------CC
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEecCCeEE-EEeccc--cCCcccCHHHHHHHHHHHc----C------CC
Confidence 456778899999999999988788999999995 88888 699988 4778999999999998765 1 23
Q ss_pred cCCCcEEEE-----cCCChHHHHHHHHHhCCC
Q 032165 87 KFSKCCLYV-----TCEPCIMCAAALSILGIK 113 (146)
Q Consensus 87 ~~~~~~ly~-----t~ePC~mC~~al~~sgi~ 113 (146)
.+...++|+ +.+||.||+++|.+.+-.
T Consensus 70 ~~~~i~vv~~~~~~~~~PCG~Crq~l~e~~~~ 101 (130)
T 2z3g_A 70 NLTCIVAIGNENRGILSPCGRCRQVLLDLHPG 101 (130)
T ss_dssp CEEEEEEEETTTTEEECCCHHHHHHHHHHCTT
T ss_pred ceEEEEEEECCCCCccCcCHHHHHHHHHhCCC
Confidence 567778887 688999999999998744
No 21
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=99.59 E-value=6.1e-15 Score=105.14 Aligned_cols=96 Identities=16% Similarity=0.062 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCC
Q 032165 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (146)
Q Consensus 11 ~~~~~m~~a~~~A~~a~~~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (146)
.++++++.|++++++++...+ ||||+|+. ||+|+ +|+|.++...+++.|||++||.++... | ...+.
T Consensus 3 ~~~~L~~~A~~a~~~ayaPyS-~VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~~a~~~----G------~~~~~ 70 (142)
T 3b8f_A 3 IEQQLYDVVKQLIEQRYPNDW-GGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKF----Q------KKVTH 70 (142)
T ss_dssp HHHHHHHHHHHHHHHHCSSSC-EEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHH----T------CCEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCC-CEEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHHHHHHC----C------CCcEE
Confidence 467899999999999988777 99999995 88877 899999998899999999999998875 1 12334
Q ss_pred CcEEEEc--------CCChHHHHHHHHHhCCCEEEEe
Q 032165 90 KCCLYVT--------CEPCIMCAAALSILGIKEVYYG 118 (146)
Q Consensus 90 ~~~ly~t--------~ePC~mC~~al~~sgi~~Vvy~ 118 (146)
...++.+ ..||.+|.+.|.+.+-.-.|+.
T Consensus 71 ~~~v~~~~~~~~~~~~sPCG~CRq~l~e~~~~~~v~~ 107 (142)
T 3b8f_A 71 SICLARENEHSELKVLSPCGVCQERLFYWGPEVQCAI 107 (142)
T ss_dssp EEEEEESSTTSCCEECCCCHHHHHHHGGGCTTCEEEC
T ss_pred EEEEEecCCCCCCCCCCcHHHHHHHHHHhCCCCEEEE
Confidence 5566653 4599999999999985544443
No 22
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=99.53 E-value=7.1e-14 Score=99.59 Aligned_cols=93 Identities=20% Similarity=0.329 Sum_probs=77.0
Q ss_pred CChhHHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhh
Q 032165 8 WSPDTLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIA 85 (146)
Q Consensus 8 ~~~~~~~~m~~a~~~A~~a~~~-~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~ 85 (146)
..++++++++.|.+.+++++.. .+++|||+|+. +|+|+ +|+|.++...+++.|||+.||.++... | .
T Consensus 7 ~~~~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~~a~~~----G------~ 75 (142)
T 1r5t_A 7 EDRQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMA----G------H 75 (142)
T ss_dssp CHHHHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT----T------C
T ss_pred chhHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHHHHHHc----C------C
Confidence 3455678999999999998873 69999999995 88877 799999988899999999999998765 1 1
Q ss_pred cc-CCCcEEEEc----C-CChHHHHHHHHHhC
Q 032165 86 EK-FSKCCLYVT----C-EPCIMCAAALSILG 111 (146)
Q Consensus 86 ~~-~~~~~ly~t----~-ePC~mC~~al~~sg 111 (146)
.. +....++.. . .||.+|.+.|.+.+
T Consensus 76 ~~~i~~i~vv~~~~~~~~~PCG~CRq~l~e~~ 107 (142)
T 1r5t_A 76 RSGWKCMVICGDSEDQCVSPCGVCRQFINEFV 107 (142)
T ss_dssp CSCCCEEEEEESCSSSCCCCCHHHHHHHHTTS
T ss_pred CCceEEEEEEeCCCCcccCHHHHHHHHHHHhC
Confidence 23 667778873 4 89999999999986
No 23
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=99.52 E-value=5.1e-14 Score=99.79 Aligned_cols=96 Identities=22% Similarity=0.277 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHHhhc-CCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhcc
Q 032165 10 PDTLAFMDLAIQQAKLALD-SLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (146)
Q Consensus 10 ~~~~~~m~~a~~~A~~a~~-~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (146)
++.+++++.|.+.+++++. ..+++|||+|+. +|+|+ +|.|.++....++.|||+.||.++... | ...
T Consensus 8 ~~~~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Av~~----G------~~~ 76 (138)
T 3r2n_A 8 VNWDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLI-TGVNVENASYGLALCAECSMISALYAT----G------GGR 76 (138)
T ss_dssp CCHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT----T------CCC
T ss_pred HhHHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEE-EEEcccccCCCCCcCHHHHHHHHHHHc----C------CCc
Confidence 4567899999999998876 469999999996 78876 999999988889999999999998765 1 112
Q ss_pred CCCcEEEEc------CCChHHHHHHHHHhCCCEEEEe
Q 032165 88 FSKCCLYVT------CEPCIMCAAALSILGIKEVYYG 118 (146)
Q Consensus 88 ~~~~~ly~t------~ePC~mC~~al~~sgi~~Vvy~ 118 (146)
+. .++++ ..||.+|.+.|.+.+-..|+..
T Consensus 77 i~--aiav~~~~~~~~~PCG~CRQ~l~E~~~~~i~v~ 111 (138)
T 3r2n_A 77 LV--AVYCVDGNGDSLMPCGRCRQLLYEHGGPELKIM 111 (138)
T ss_dssp EE--EEEEECTTSCBCCCCHHHHHHHHHHHCTTCEEE
T ss_pred eE--EEEEEcCCCCcCCCCHHHHHHHHHhCCCCEEEE
Confidence 22 24444 6899999999999863345543
No 24
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=99.50 E-value=1.1e-13 Score=98.34 Aligned_cols=90 Identities=24% Similarity=0.359 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccC
Q 032165 11 DTLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (146)
Q Consensus 11 ~~~~~m~~a~~~A~~a~~~-~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (146)
..+++++.|.+.+++++.. .+++|||+|+. +|+|+ +|+|.++.....+.|||+.||.++... | ...+
T Consensus 11 ~~~~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Avs~----G------~~~~ 79 (141)
T 2d30_A 11 NSKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSE----G------DKEF 79 (141)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT----T------CCCE
T ss_pred CHHHHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEE-EeeccccCCCCcccCHHHHHHHHHHHC----C------CCce
Confidence 3567889999999888864 69999999995 78766 999999988889999999999998765 1 1234
Q ss_pred CCcEEEEc----CCChHHHHHHHHHhC
Q 032165 89 SKCCLYVT----CEPCIMCAAALSILG 111 (146)
Q Consensus 89 ~~~~ly~t----~ePC~mC~~al~~sg 111 (146)
....++.. ..||.+|.+.|.+.+
T Consensus 80 ~aiav~~~~~~~~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 80 VAIAIVADTKRPVPPCGACRQVMVELC 106 (141)
T ss_dssp EEEEEEESCSSCCCCCHHHHHHHHHHS
T ss_pred EEEEEEeCCCCccCcCHHHHHHHHHhc
Confidence 44455544 579999999999986
No 25
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=99.40 E-value=8.8e-13 Score=94.44 Aligned_cols=97 Identities=23% Similarity=0.242 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHHHHhhc-CCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhcc
Q 032165 10 PDTLAFMDLAIQQAKLALD-SLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (146)
Q Consensus 10 ~~~~~~m~~a~~~A~~a~~-~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (146)
.+.++.++.|.+.+++++. ..+++|||+|.. +|+|+ +|.|.++.....+.|||+.||.++... | ...
T Consensus 23 ~~~~~L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~~Avs~----G------~~~ 91 (150)
T 3mpz_A 23 VNWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVCALHSG----G------GGR 91 (150)
T ss_dssp CCHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT----T------CCC
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHHHHHHc----C------CCc
Confidence 3457789999998888876 469999999995 88877 999999988888999999999998765 1 122
Q ss_pred CCCcEEEE----cCCChHHHHHHHHHhCCCEEEE
Q 032165 88 FSKCCLYV----TCEPCIMCAAALSILGIKEVYY 117 (146)
Q Consensus 88 ~~~~~ly~----t~ePC~mC~~al~~sgi~~Vvy 117 (146)
+....++. ...||.+|.+.|.+.+-..|++
T Consensus 92 i~aiavv~~~~~~~~PCG~CRQ~L~Ef~~~~v~v 125 (150)
T 3mpz_A 92 LVALSCVGPDGGVLMPCGRCRQVLLEHGGPELLI 125 (150)
T ss_dssp EEEEEEECTTSCBCCCCHHHHHHHHHHHCTTCEE
T ss_pred eEEEEEEcCCCCccCCCHHHHHHHHHhCCCCEEE
Confidence 33333332 2579999999999986334444
No 26
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=99.28 E-value=3.2e-11 Score=95.01 Aligned_cols=93 Identities=22% Similarity=0.190 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccC
Q 032165 11 DTLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (146)
Q Consensus 11 ~~~~~m~~a~~~A~~a~~~-~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (146)
+++++++.|++.+++++.. .++||||+|+. ||+ |.+|+|.++...+++.|||+.||.++... |.+ ...+
T Consensus 187 ~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~-i~tG~NvEnasy~~tlCAEr~Ai~~av~~----G~~----~~~i 257 (294)
T 1ctt_A 187 TGDALSQAAIAAANRSHMPYSKSPSGVALECKDGR-IFSGSYAENAAFNPTLPPLQGALILLNLK----GYD----YPDI 257 (294)
T ss_dssp CSSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSC-EEEEECBCCTTSTTCBCHHHHHHHHHHHT----TCC----GGGE
T ss_pred ChHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCC-EEEEEeeecCCCCCccCHHHHHHHHHHHc----CCC----cCCE
Confidence 3468999999999998874 49999999996 675 55899999999999999999999998764 211 1346
Q ss_pred CCcEEEEcCC----ChHHHHHHHHHhCC
Q 032165 89 SKCCLYVTCE----PCIMCAAALSILGI 112 (146)
Q Consensus 89 ~~~~ly~t~e----PC~mC~~al~~sgi 112 (146)
....++...+ ||.+|.+.|...+-
T Consensus 258 ~~i~vv~~~~~~~sPCG~CRq~L~ef~~ 285 (294)
T 1ctt_A 258 QRAVLAEKADAPLIQWDATSATLKALGC 285 (294)
T ss_dssp EEEEEEECTTCSSCCHHHHHHHHHHHTC
T ss_pred EEEEEEecCCCCcCccHHHHHHHHHHCC
Confidence 6778888776 99999999999874
No 27
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=99.24 E-value=3.9e-11 Score=84.85 Aligned_cols=93 Identities=24% Similarity=0.317 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHHHHhhc-CCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhcc
Q 032165 10 PDTLAFMDLAIQQAKLALD-SLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (146)
Q Consensus 10 ~~~~~~m~~a~~~A~~a~~-~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (146)
+.+.+.++.|.+..++++. ..+++|||++.. ||+|+ +|.|.++.....+.|||+.||-++... |.. ...
T Consensus 9 ~~~~~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~iy-tG~NVEnasy~~t~CAEr~Ai~~Avs~----G~~----~~~ 79 (138)
T 3dmo_A 9 MTHHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALFSALAA----GYR----PGE 79 (138)
T ss_dssp CCHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT----TCC----TTC
T ss_pred ccHHHHHHHHHHHHHhccCCcCCCCEEEEEEeCCCCEE-EEEeecccccccccCHHHHHHHHHHHc----CCC----ccc
Confidence 3477889999998888887 369999999996 77765 999999988888999999999998765 110 002
Q ss_pred CCCcEEEEc----CCChHHHHHHHHHhC
Q 032165 88 FSKCCLYVT----CEPCIMCAAALSILG 111 (146)
Q Consensus 88 ~~~~~ly~t----~ePC~mC~~al~~sg 111 (146)
+....+... ..||..|.+.|.+.+
T Consensus 80 i~aiavv~~~~~~~~PCG~CRQ~l~Ef~ 107 (138)
T 3dmo_A 80 FAAIAVVGETHGPIAPCGACRQVMIELG 107 (138)
T ss_dssp EEEEEEEESCSSSCCCCHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCccCCCHHHHHHHHHhC
Confidence 222222221 469999999999984
No 28
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=99.20 E-value=2.9e-10 Score=82.05 Aligned_cols=98 Identities=22% Similarity=0.218 Sum_probs=68.5
Q ss_pred CCChhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhh
Q 032165 7 EWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIA 85 (146)
Q Consensus 7 ~~~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~ 85 (146)
..+.++++.++.|.+..+++..+.+++|||+|.. ||+|+ +|.|.++ ...+.|||+.||.++... | .
T Consensus 26 ~L~~ed~~Li~~A~~a~~~~PyS~~f~VGAAll~~dG~i~-tG~NVEn--~~~~lCAEr~Ai~~Avs~----G------~ 92 (158)
T 3oj6_A 26 PLSAAGQNLIDTATSVINGIPVSDFYSVASAAISDDGRVF-SGVNVYH--FNGGPCAELVVLGVAAAA----G------A 92 (158)
T ss_dssp BCCHHHHHHHHHHHHHHHTSCCCSSSCEEEEEEETTSCEE-EEECCCC--TTTCCCHHHHHHHHHHHT----T------C
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCCCEE-EEEcccc--CCccccHHHHHHHHHHHh----C------C
Confidence 3456778899999988765322224899999996 78877 9999875 557899999999998765 1 1
Q ss_pred ccCCCcEEEEc-----CCChHHHHHHHHHhCCC-EEEE
Q 032165 86 EKFSKCCLYVT-----CEPCIMCAAALSILGIK-EVYY 117 (146)
Q Consensus 86 ~~~~~~~ly~t-----~ePC~mC~~al~~sgi~-~Vvy 117 (146)
..+....+... ..||..|.+.|.+.+-. +|+.
T Consensus 93 ~~~~ai~vv~~~~~~~~~PCG~CRQvL~Ef~~~~~vil 130 (158)
T 3oj6_A 93 TKLTHIVAIANEGRGILSPCGRCRQVLADLHPGIKAIV 130 (158)
T ss_dssp CCEEEEEEEETTTTEEECCCHHHHHHHHHHSTTCEEEE
T ss_pred CceEEEEEEeCCCCCcCCCCHHHHHHHHHhCCCCEEEE
Confidence 12222222222 25999999999998643 4444
No 29
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=99.14 E-value=1.5e-10 Score=91.12 Aligned_cols=87 Identities=23% Similarity=0.192 Sum_probs=64.1
Q ss_pred HHHHHHHH-HHHHHHhhcC-CCCcEEEEEee-CCeEEEEeecCCcCC--CCCCccHHHHHHHHHHHHHhhCCCChhhhhc
Q 032165 12 TLAFMDLA-IQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTET--RNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (146)
Q Consensus 12 ~~~~m~~a-~~~A~~a~~~-~~~pvGavIv~-~g~ii~~g~N~~~~~--~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (146)
+++++..+ .+...+++.. .+++|||+++. +|+|+ +|.|.++.+ ...+.|||++||.++... | ..
T Consensus 49 ~~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i~-~G~NvEnas~~~~~t~CAEr~Ai~~A~~~----G------~~ 117 (294)
T 1ctt_A 49 EDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLS----G------EK 117 (294)
T ss_dssp HHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHT----T------CC
T ss_pred HHHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCEE-EEEcCCccCccCCCccCHHHHHHHHHHHc----C------CC
Confidence 44455444 4544556653 69999999995 78766 999998765 336899999999998765 1 11
Q ss_pred cCCCcEEEEcCCChHHHHHHHHHhC
Q 032165 87 KFSKCCLYVTCEPCIMCAAALSILG 111 (146)
Q Consensus 87 ~~~~~~ly~t~ePC~mC~~al~~sg 111 (146)
.-..+.++..||.+|.+.|.+.+
T Consensus 118 --~~~~iav~~~PCG~CRQ~l~E~~ 140 (294)
T 1ctt_A 118 --ALAAITVNYTPCGHCRQFMNELN 140 (294)
T ss_dssp --CEEEEEESSCCCHHHHHHHTTBT
T ss_pred --cEEEEEEEcCCCHHHHHHHHHhC
Confidence 12356677899999999999986
No 30
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=98.75 E-value=3.1e-08 Score=77.97 Aligned_cols=81 Identities=22% Similarity=0.264 Sum_probs=58.4
Q ss_pred HHHHHHHhhc-CCCCcEEEEEee-CCeEEEEeecCCcC--CCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEE
Q 032165 19 AIQQAKLALD-SLEVPVGCVILE-DGKVIAAGRNRTTE--TRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLY 94 (146)
Q Consensus 19 a~~~A~~a~~-~~~~pvGavIv~-~g~ii~~g~N~~~~--~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly 94 (146)
+-..+.+++. ..+++|||++.. +|+|+ +|.|.++. ....+.|||+.||-++... | ...+ ..+.
T Consensus 60 ~~~A~~~AyaPyS~F~VGAAll~~dG~i~-~G~NvEna~as~~~t~CAEr~Ai~~Av~~----G------~~~i--~~ia 126 (298)
T 4eg2_A 60 LPIAAAYSYAPISEFYVGAIVRGISGRLY-LGANMEFTGAQLGQTVHAEQCAISHAWMK----G------EKGV--ADIT 126 (298)
T ss_dssp HHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHT----T------CSCE--EEEE
T ss_pred HHHHHhhCcCCcCCCcEEEEEEECCCcEE-EEEcccccccccCccccHHHHHHHHHHhC----C------CCce--EEEE
Confidence 3333444554 358999999996 77755 99999864 3346899999999998765 1 1112 2355
Q ss_pred EcCCChHHHHHHHHHhCC
Q 032165 95 VTCEPCIMCAAALSILGI 112 (146)
Q Consensus 95 ~t~ePC~mC~~al~~sgi 112 (146)
+...||..|.+.|.+.+-
T Consensus 127 v~~~PCG~CRQ~l~Ef~~ 144 (298)
T 4eg2_A 127 INFSPCGHCRQFMNELTT 144 (298)
T ss_dssp ESSCCCHHHHHHHTTBTT
T ss_pred eecCCCHHHHHHHHHhcC
Confidence 668899999999999874
No 31
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=98.65 E-value=2.9e-07 Score=72.44 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHhhc-CCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCC
Q 032165 12 TLAFMDLAIQQAKLALD-SLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (146)
Q Consensus 12 ~~~~m~~a~~~A~~a~~-~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (146)
.++.++.|++.+++++. ..+++|||+|.. ||+|+ +|.|.++...+++.+||..||.++... |.+. ..+.
T Consensus 192 ~~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iy-tG~nvEnAay~~slcAEr~Al~~av~~----G~~~----~~i~ 262 (298)
T 4eg2_A 192 DEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIY-LGAYAENAAFNPSLPPLQVALAQAMMM----GESF----EDIE 262 (298)
T ss_dssp CCHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHT----TCCG----GGEE
T ss_pred HHHHHHHHHHHHHhccCCccCCCeEEEEEeCCCCEE-EEEeeeccccCCCCCHHHHHHHHHHHC----CCCc----cCeE
Confidence 35788999999999886 358999999996 67755 999999999999999999999988654 2110 1233
Q ss_pred CcEEEEc----CCChHHHHHHHHHhC
Q 032165 90 KCCLYVT----CEPCIMCAAALSILG 111 (146)
Q Consensus 90 ~~~ly~t----~ePC~mC~~al~~sg 111 (146)
...++.. ..||.+|.+.|...+
T Consensus 263 aiv~v~~~~~~~sPCG~CRqvL~e~~ 288 (298)
T 4eg2_A 263 AAALVESATGKISHLADTQATLEVIN 288 (298)
T ss_dssp EEEEEECTTCSSCCHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCcCCcHHHHHHHHHhC
Confidence 3333332 349999999999876
No 32
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=95.85 E-value=0.011 Score=43.89 Aligned_cols=44 Identities=25% Similarity=0.452 Sum_probs=32.8
Q ss_pred CccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHHHh
Q 032165 59 TRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSIL 110 (146)
Q Consensus 59 ~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~s 110 (146)
..|||+.-|.++... .+++ ...-..|-|+|..||+-|+..|+..
T Consensus 78 ~~HAEl~FL~~~~~~----~Ld~----~~~Y~vTwy~SWSPC~~CA~~v~~F 121 (203)
T 3v4k_A 78 GRHAELCFLDVIPFW----KLDL----DQDYRVTCFTSWSPCFSCAQEMAKF 121 (203)
T ss_pred CCcHHHHHHHHhhhc----cCCC----CCeEEEEEEEeCCChHHHHHHHHHH
Confidence 479999999877532 1221 2234668999999999999999875
No 33
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=95.48 E-value=0.019 Score=42.22 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=38.7
Q ss_pred CCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHHHh-----CCCEEEEeee
Q 032165 57 NATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSIL-----GIKEVYYGCA 120 (146)
Q Consensus 57 ~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~s-----gi~~Vvy~~~ 120 (146)
.+..|||+.=|..+... .+++ ...-..|-|+|..||+-|+..|... +|.=.+|...
T Consensus 62 ~~~~HAE~~Fl~~~~~~----~L~~----~~~y~VTwy~SwSPC~~CA~~va~FL~~~~~v~L~If~aR 122 (190)
T 3vow_A 62 ETHCHAERCFLSWFCDD----ILSP----NTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTAR 122 (190)
T ss_dssp CGGGSHHHHHHHHHSST----TSCT----TSEEEEEEEEEECCCHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred cccccHHHHHHHHHhhc----CCCC----CceEEEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEEEEe
Confidence 46689999999876432 2221 1223578999999999999998864 5655566553
No 34
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure INI PSI-2; 2.51A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=44.63 E-value=64 Score=26.58 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCC----------------
Q 032165 16 MDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGL---------------- 79 (146)
Q Consensus 16 m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~---------------- 79 (146)
...|.+.|++. +.|.+|+-+.||+|| +|-+. ++.+|--.+|.++.+.+..-+.
T Consensus 349 v~~A~~~ae~t----~~pa~AieL~DG~Iv-TGKtS------~LlgasaA~lLNAlK~LagI~d~i~Lisp~~iepIq~L 417 (507)
T 3bh1_A 349 VEPARQVEERT----SLPGCAIELVDGSII-TGATS------DLLGCSSSMLLNALKHLAGIDDAIHLLSPESIEPIQTL 417 (507)
T ss_dssp HHHHHHHHHHH----SSCEEEEECTTSCEE-EEECC------SSBCHHHHHHHHHHHHHHTCCTTCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHh----CCCeEEEEeCCCCEE-eCCCc------cccchHHHHHHHHHHHHcCCCCcccccCHHHHHhHHHH
Confidence 33444444443 368888878899988 78775 6778888888888766543220
Q ss_pred ------------Chh--------------------hhhccCCCcEEEEcCCChHHHHHHHHHhCCC
Q 032165 80 ------------SQS--------------------EIAEKFSKCCLYVTCEPCIMCAAALSILGIK 113 (146)
Q Consensus 80 ------------~~~--------------------~~~~~~~~~~ly~t~ePC~mC~~al~~sgi~ 113 (146)
..+ +....+.||.+.+|.=+-.-=...+...||.
T Consensus 418 Kt~~Lgs~nprLh~dEvLIALSisA~tn~~A~~Al~qL~~L~Gc~aH~Tvils~~De~~frkLGi~ 483 (507)
T 3bh1_A 418 KTVHLGSSNPRLHTDEVLIALSVSAATDSNAQKALDQLKNLRGCDVHTTTILGSVDEGIFRNLGVL 483 (507)
T ss_dssp HHHTSCCSCCCBCHHHHHHHHHHHTTTCHHHHHHHTTGGGGTTCEEEESSCCCHHHHHHHHHTTCE
T ss_pred hHHHhCCCCCCCCHhHHHHHHHHHhcCCHHHHHHHHhhhhccCCceeEeecCChhhHHHHHHcCCc
Confidence 000 0245678999999988888888888888874
No 35
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=42.69 E-value=94 Score=26.09 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=49.2
Q ss_pred EEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCC-ChHHHHHHHHHhCCCEE
Q 032165 37 VILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCE-PCIMCAAALSILGIKEV 115 (146)
Q Consensus 37 vIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~e-PC~mC~~al~~sgi~~V 115 (146)
|++++|+.|+.|.-+. .-.|+-..|+.++... +..+.|+.+-.-.. |=.-|......+||+-|
T Consensus 438 v~akdg~tvGiGaGQ~-----sRV~s~r~A~~kA~~~-----------g~~~~G~vlASDAFFPF~D~ve~Aa~aGV~aI 501 (534)
T 4ehi_A 438 VYVKNGAMVAIGMGMT-----SRIDAAKAAIAKAKEM-----------GLDLQGCVLASEAFFPFRDSIDEASKVGVKAI 501 (534)
T ss_dssp EEEETTEEEEEECSSS-----CHHHHHHHHHHHHHHT-----------TCCCTTCEEECSSCCCSTHHHHHHHHTTCCEE
T ss_pred EEEeCCeEEEECCCCc-----chHHHHHHHHHHHHhh-----------ccCCCCeEEEeccccCCCccHHHHHHcCCEEE
Confidence 4557999999998763 3358888898887543 23467877766543 99999999999999987
Q ss_pred EE
Q 032165 116 YY 117 (146)
Q Consensus 116 vy 117 (146)
+=
T Consensus 502 iQ 503 (534)
T 4ehi_A 502 VE 503 (534)
T ss_dssp EE
T ss_pred EC
Confidence 74
No 36
>2fb5_A Hypothetical membrane spanning protein; structural genomics, membrane protein, PSI, protein structur initiative; 1.99A {Bacillus cereus} SCOP: d.320.1.1
Probab=41.48 E-value=14 Score=27.12 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=22.5
Q ss_pred EEEEeeCCeEEEEeecCC------cCCCCCCccHHHHHH
Q 032165 35 GCVILEDGKVIAAGRNRT------TETRNATRHAEMEAI 67 (146)
Q Consensus 35 GavIv~~g~ii~~g~N~~------~~~~~~~~HAE~~Ai 67 (146)
||+|+++|+|++.|+--- .+..-+++|---..|
T Consensus 136 GAvII~~~rI~aA~~~LPls~~~~i~~~lGTRHRAA~GI 174 (205)
T 2fb5_A 136 GAVLVKNNHIVSAANILPLTKSTEVDPELGTRHRAAIGL 174 (205)
T ss_dssp SEEEEETTEEEEEEEBCCCCCCTTSCTTCCHHHHHHHHH
T ss_pred cEEEEECCEEEEEEEEecCCCCCCcCccccHHHHHHHHH
Confidence 899999999999886431 223457778644444
No 37
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=39.46 E-value=1.4e+02 Score=24.99 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=48.0
Q ss_pred EEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcC-CChHHHHHHHHHhCCCE
Q 032165 36 CVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTC-EPCIMCAAALSILGIKE 114 (146)
Q Consensus 36 avIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~-ePC~mC~~al~~sgi~~ 114 (146)
-|++++|+.|+.|.-+. .-.|+-..|+.++.. .+.|+.+-.-. .|=.-|......+||+-
T Consensus 429 Iv~akdg~tvGiGaGQ~-----sRV~s~r~A~~kAg~--------------~~~G~vlaSDAFFPF~D~ve~aa~aGv~a 489 (523)
T 3zzm_A 429 IVIAADGATVGVGMGQV-----NRVDAARLAVERGGE--------------RVRGAVAASDAFFPFPDGLETLAAAGVTA 489 (523)
T ss_dssp EEEEETTEEEEEECSCS-----SHHHHHHHHHHHHGG--------------GCTTCEEEESSCCSSHHHHHHHHHTTCCE
T ss_pred EEEEECCeEEEECCCCc-----chHHHHHHHHHHhcc--------------ccCCeEEEeccCcCCCccHHHHHHcCCEE
Confidence 34557999999998763 234888888888742 35677776644 49999999999999998
Q ss_pred EEE
Q 032165 115 VYY 117 (146)
Q Consensus 115 Vvy 117 (146)
|+=
T Consensus 490 IiQ 492 (523)
T 3zzm_A 490 VVH 492 (523)
T ss_dssp EEE
T ss_pred EEC
Confidence 775
No 38
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=38.19 E-value=85 Score=20.68 Aligned_cols=42 Identities=21% Similarity=0.327 Sum_probs=24.7
Q ss_pred EEEEeeCCeEEEE-eecCCc-CCCCCCccHHHHHHHHHHHHHhh
Q 032165 35 GCVILEDGKVIAA-GRNRTT-ETRNATRHAEMEAIDVLLDQWQK 76 (146)
Q Consensus 35 GavIv~~g~ii~~-g~N~~~-~~~~~~~HAE~~Ai~~~~~~~~~ 76 (146)
|++|.++|+.+.. +....+ ........||..|+..+.+....
T Consensus 22 G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~ 65 (149)
T 2ehg_A 22 GFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLR 65 (149)
T ss_dssp EEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 7777777877632 222110 01122358999999998876543
No 39
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=34.91 E-value=26 Score=25.88 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.2
Q ss_pred ccCCCcEEEEcCCChHHHHH
Q 032165 86 EKFSKCCLYVTCEPCIMCAA 105 (146)
Q Consensus 86 ~~~~~~~ly~t~ePC~mC~~ 105 (146)
..|..|--++..+||.-|+.
T Consensus 69 ~~C~~C~nlte~~~C~IC~d 88 (212)
T 3vdp_A 69 RYCKICFNITDKEVCDICSD 88 (212)
T ss_dssp EECTTTCCEESSSSCHHHHC
T ss_pred CcCCCCCCCCCCCcCCCCCC
Confidence 45788888999999999985
No 40
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=32.51 E-value=30 Score=25.80 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=16.8
Q ss_pred ccCCCcEEEEcCCChHHHHH
Q 032165 86 EKFSKCCLYVTCEPCIMCAA 105 (146)
Q Consensus 86 ~~~~~~~ly~t~ePC~mC~~ 105 (146)
..|..|--++..+||.-|+.
T Consensus 55 ~~C~~C~nlte~~~C~IC~d 74 (228)
T 1vdd_A 55 HVCPICFNITDAEKCDVCAD 74 (228)
T ss_dssp EECSSSCCEESSSSCHHHHC
T ss_pred eEcCCCCCCcCCCcCCCCCC
Confidence 45778878899999999984
No 41
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=32.00 E-value=1e+02 Score=21.19 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=34.2
Q ss_pred cEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHH
Q 032165 33 PVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMC 103 (146)
Q Consensus 33 pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC 103 (146)
..|++|+.+|+++..+... ...-...||..|+..+.+.. .....++|+..+-...|
T Consensus 40 g~G~vi~~~~~~~~~~~~~---~~~Tnn~aEl~Ai~~AL~~~------------~~~~v~I~tDS~~vi~~ 95 (165)
T 3p1g_A 40 RAGAAVTTETEVIWARALP---AGTSAQRAELIALTQALKMA------------EGKKLNVYTDSRYAFAT 95 (165)
T ss_dssp EEEEEEECSSCEEEEEEEC---TTCCHHHHHHHHHHHHHHHT------------BTSEEEEEECCHHHHHH
T ss_pred EEEEEEEECCEEEEEecCC---CCCcHHHHHHHHHHHHHHHc------------cCceEEEEEchHHHHhh
Confidence 3566677777766544221 12223589999999998773 13456778766544443
No 42
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=31.49 E-value=95 Score=22.01 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=28.5
Q ss_pred CcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCC
Q 032165 32 VPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLS 80 (146)
Q Consensus 32 ~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~ 80 (146)
+.+-+.|...|+++.+|.... ..-..|+++..+.++..|++
T Consensus 53 P~~t~lIF~SGKiv~TGakS~--------~~~~~a~~~i~~~L~~lG~~ 93 (182)
T 1ais_A 53 PKVALLIFSSGKLVVTGAKSV--------QDIERAVAKLAQKLKSIGVK 93 (182)
T ss_dssp SCCEEEECTTSEEEEEEESSH--------HHHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEeCCCeEEEecCCCH--------HHHHHHHHHHHHHHHHcCCC
Confidence 344455557999999999753 23466777777777777764
No 43
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=30.68 E-value=1.4e+02 Score=21.06 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=36.6
Q ss_pred cEEEEEeeCCeEEEEeecCCcCCCCC--CccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcCCChHHHHHHHHH-
Q 032165 33 PVGCVILEDGKVIAAGRNRTTETRNA--TRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSI- 109 (146)
Q Consensus 33 pvGavIv~~g~ii~~g~N~~~~~~~~--~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~ePC~mC~~al~~- 109 (146)
|.--+| .+|+|+......... ..+ ..|++.. +. ..+. . ...-...++|++ .-|+.|..+..+
T Consensus 126 p~t~li-~~G~i~~~~~~~~~~-~~~~~~~~~~~i-l~-~l~~---~-------~i~~~~i~ly~~-~~Cp~C~~a~~~L 190 (241)
T 1nm3_A 126 RYSMLV-KNGVVEKMFIEPNEP-GDPFKVSDADTM-LK-YLAP---Q-------HQVQESISIFTK-PGCPFCAKAKQLL 190 (241)
T ss_dssp CEEEEE-ETTEEEEEEECCSCS-SCCCSSSSHHHH-HH-HHCT---T-------SCCCCCEEEEEC-SSCHHHHHHHHHH
T ss_pred eEEEEE-ECCEEEEEEEeccCC-CccceecCHHHH-HH-Hhhh---h-------ccccceEEEEEC-CCChHHHHHHHHH
Confidence 444455 899999776653211 111 1455432 22 2221 0 011235678855 699999987654
Q ss_pred --hCCCEEEE
Q 032165 110 --LGIKEVYY 117 (146)
Q Consensus 110 --sgi~~Vvy 117 (146)
.||.-..+
T Consensus 191 ~~~~i~~~~~ 200 (241)
T 1nm3_A 191 HDKGLSFEEI 200 (241)
T ss_dssp HHHTCCCEEE
T ss_pred HHcCCceEEE
Confidence 46664443
No 44
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=27.16 E-value=1.4e+02 Score=21.20 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=27.8
Q ss_pred CcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCC
Q 032165 32 VPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLS 80 (146)
Q Consensus 32 ~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~ 80 (146)
+..-+.|...|+++.+|..... .-..|++++++.++..|++
T Consensus 57 Pk~t~lIF~SGKiv~TGAkS~e--------~a~~a~~~~~~~L~~lg~~ 97 (188)
T 2z8u_A 57 PKVALLIFRSGKVNCTGAKSKE--------EAEIAIKKIIKELKDAGID 97 (188)
T ss_dssp TTEEEEECTTSEEEEEEESSHH--------HHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEeCCCeEEEecCCCHH--------HHHHHHHHHHHHHHhcCCC
Confidence 3344444568999999987532 3366777777777777754
No 45
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*
Probab=25.56 E-value=13 Score=26.30 Aligned_cols=10 Identities=20% Similarity=0.683 Sum_probs=7.8
Q ss_pred cCCChHHHHH
Q 032165 96 TCEPCIMCAA 105 (146)
Q Consensus 96 t~ePC~mC~~ 105 (146)
-.+||++|..
T Consensus 37 gl~PC~LCi~ 46 (176)
T 2zuq_A 37 LLKPSVLCIY 46 (176)
T ss_dssp CCCCCTTHHH
T ss_pred CCCCcHhHHH
Confidence 5789998864
No 46
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=25.45 E-value=2.8e+02 Score=22.77 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=46.6
Q ss_pred EEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCCcEEEEcC-CChHHHHHHHHHhCCCEE
Q 032165 37 VILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTC-EPCIMCAAALSILGIKEV 115 (146)
Q Consensus 37 vIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~-ePC~mC~~al~~sgi~~V 115 (146)
|+++||+.|+.|.-+. .-.|+-..|+.++..+ ..|+.|-.-. .|=.-|......+||+-|
T Consensus 371 v~akdg~tvGiGaGQ~-----sRV~s~riA~~kA~~~--------------~~G~vlASDAFFPF~D~v~~aa~aGv~aI 431 (464)
T 1zcz_A 371 LIAKDGVTVGIGSGQP-----SRKRAAWIATVMAGEK--------------AKGAVAASDAFFPFPDSLEILAQAGVKAV 431 (464)
T ss_dssp EEEETTEEEEEECSCS-----SHHHHHHHHHHHHGGG--------------GTTCEEEESSCCSSHHHHHHHHHTTCCEE
T ss_pred EEEeCCeEEEECCCCC-----chHHHHHHHHHHhhcc--------------cCCeEEEecccCCchhhHHHHHHhCCeEE
Confidence 4457999999998763 2348888888888643 2466665533 499999999999999988
Q ss_pred EE
Q 032165 116 YY 117 (146)
Q Consensus 116 vy 117 (146)
+=
T Consensus 432 iQ 433 (464)
T 1zcz_A 432 VA 433 (464)
T ss_dssp EE
T ss_pred Ec
Confidence 75
No 47
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=25.04 E-value=1.6e+02 Score=21.60 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=28.3
Q ss_pred CcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCC
Q 032165 32 VPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLS 80 (146)
Q Consensus 32 ~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~ 80 (146)
+.+-+.|+..|+++.+|..... .-..|++++.+.++..|++
T Consensus 87 Pk~t~LIF~SGKiV~TGAkS~e--------~a~~A~~ki~~~L~~lG~~ 127 (218)
T 3eik_A 87 PKTTALIFASGKMVITGAKSEK--------SSRMAAQRYAKIIHKLGFN 127 (218)
T ss_dssp TTEEEEECTTSEEEEEEESSHH--------HHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEECCCeEEEEecCCHH--------HHHHHHHHHHHHHHHcCCC
Confidence 3444555579999999997532 2356777788877777754
No 48
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=24.85 E-value=1.4e+02 Score=21.55 Aligned_cols=41 Identities=20% Similarity=0.465 Sum_probs=27.9
Q ss_pred CcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCC
Q 032165 32 VPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLS 80 (146)
Q Consensus 32 ~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~ 80 (146)
+..-+.|...|+++.+|.... -.-..|++++.+.++..|++
T Consensus 57 Pk~t~lIF~SGKiv~TGakS~--------e~a~~a~~~i~~~L~~lG~~ 97 (198)
T 1mp9_A 57 PKITSLIFKSGKMVVTGAKST--------DELIKAVKRIIKTLKKYGMQ 97 (198)
T ss_dssp TTEEEEECTTSEEEEECCSSH--------HHHHHHHHHHHHHHHHTTCC
T ss_pred CceEEEEeCCCeEEEeccCCH--------HHHHHHHHHHHHHHHHcCCc
Confidence 344455557999999998753 23366777777777777764
No 49
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=24.34 E-value=1.5e+02 Score=21.01 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=26.1
Q ss_pred CcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCC
Q 032165 32 VPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGL 79 (146)
Q Consensus 32 ~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~ 79 (146)
+.+-+.|+..|+++.+|.... -.-..|+++..+.++..|+
T Consensus 49 Pk~~~lIF~SGKiv~TGaks~--------e~~~~a~~~i~~~L~~lg~ 88 (180)
T 1ytb_A 49 PKTTALIFASGKMVVTGAKSE--------DDSKLASRKYARIIQKIGF 88 (180)
T ss_dssp TTEEEEECTTSEEEEEEESSH--------HHHHHHHHHHHHHHHHHTC
T ss_pred CcEEEEEECCCeEEEEecCCH--------HHHHHHHHHHHHHHHHcCC
Confidence 444455557999999998753 2235667777666666664
No 50
>3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides}
Probab=22.99 E-value=62 Score=23.33 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=15.5
Q ss_pred EEEEeeCCeEEEEeecCC
Q 032165 35 GCVILEDGKVIAAGRNRT 52 (146)
Q Consensus 35 GavIv~~g~ii~~g~N~~ 52 (146)
|+|+|++|+|++.|-+..
T Consensus 23 ~~V~I~dG~I~~Ig~~~~ 40 (403)
T 3mtw_A 23 PLVIVTDGRITSIGKKGD 40 (403)
T ss_dssp EEEEEETTEEEEEEETTC
T ss_pred cEEEEECCEEEEEeCCCC
Confidence 789999999999997743
No 51
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=21.16 E-value=94 Score=20.95 Aligned_cols=41 Identities=17% Similarity=0.041 Sum_probs=24.4
Q ss_pred cEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhh
Q 032165 33 PVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQK 76 (146)
Q Consensus 33 pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~ 76 (146)
-+|+||..+|+.+...... ...-...||..|+..+.+....
T Consensus 28 G~G~vl~~~g~~~~~~~~~---~~~TNN~aEl~A~i~aL~~~~~ 68 (142)
T 1zbf_A 28 EYKGVDTKTGEVLFEREPI---PIGTNNMGEFLAIVHGLRYLKE 68 (142)
T ss_dssp EEEEEETTTCCEEEECCCE---EEECHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCEEEEEeccc---CCcCcHHHHHHHHHHHHHHHHh
Confidence 3667776677665432111 0112348999999998877543
No 52
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=20.13 E-value=1.4e+02 Score=19.11 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=23.5
Q ss_pred CcEEEEEeeC--CeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhh
Q 032165 32 VPVGCVILED--GKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQK 76 (146)
Q Consensus 32 ~pvGavIv~~--g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~ 76 (146)
..+|++|.+. |.++....-... ..-...||..|+..+.+....
T Consensus 19 ~g~G~v~~~~~~~~~~~~~~~~~~--~~tn~~aEl~A~~~aL~~a~~ 63 (141)
T 3hst_B 19 AGYGAVVWTADHSTVLAESKQAIG--RATNNVAEYRGLIAGLDDAVK 63 (141)
T ss_dssp EEEEEEEEETTSCSEEEEEEEEEE--EECHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEeCCCCcEEEeeeccCC--CCchHHHHHHHHHHHHHHHHH
Confidence 4567777763 544421111100 112258999999998876543
Done!