Your job contains 1 sequence.
>032166
MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH
PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE
ESEKSMSEVNDEDDDEEGSGEEDDDE
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032166
(146 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:505006135 - symbol:HMGB2 "high mobility group ... 394 1.3e-36 1
TAIR|locus:2053893 - symbol:HMGB4 "high mobility group B4... 290 1.4e-25 1
TAIR|locus:2128003 - symbol:HMGB5 "high mobility group B5... 244 1.0e-20 1
MGI|MGI:1098219 - symbol:Hmgb3 "high mobility group box 3... 189 4.8e-17 2
UNIPROTKB|F1RQ19 - symbol:LOC100517745 "Uncharacterized p... 189 4.8e-17 2
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp... 188 6.0e-17 2
UNIPROTKB|Q32L31 - symbol:HMGB3 "High mobility group prot... 188 6.0e-17 2
UNIPROTKB|E7EQU1 - symbol:HMGB3 "High mobility group prot... 188 6.0e-17 2
UNIPROTKB|E7ES08 - symbol:HMGB3 "High mobility group prot... 188 6.0e-17 2
UNIPROTKB|O15347 - symbol:HMGB3 "High mobility group prot... 188 6.0e-17 2
UNIPROTKB|E1BIU3 - symbol:LOC532409 "Uncharacterized prot... 188 6.0e-17 2
UNIPROTKB|P40618 - symbol:HMGB3 "High mobility group prot... 186 9.8e-17 2
UNIPROTKB|J9NVS3 - symbol:HMGB3 "Uncharacterized protein"... 183 2.0e-16 2
UNIPROTKB|P36194 - symbol:HMGB1 "High mobility group prot... 182 2.5e-16 2
TAIR|locus:2154433 - symbol:HMGB6 "high-mobility group bo... 186 1.4e-14 1
UNIPROTKB|F1N927 - symbol:HMGB1 "High mobility group prot... 184 2.3e-14 1
UNIPROTKB|Q9YH06 - symbol:HMG1 "High mobility group 1 pro... 184 2.3e-14 1
UNIPROTKB|F1NPU8 - symbol:HMGB2 "High mobility group prot... 183 3.0e-14 1
RGD|1559962 - symbol:RGD1559962 "similar to High mobility... 183 3.0e-14 1
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g... 182 3.8e-14 1
UNIPROTKB|P10103 - symbol:HMGB1 "High mobility group prot... 182 3.8e-14 1
UNIPROTKB|Q6YKA4 - symbol:HMGB1 "High mobility group prot... 182 3.8e-14 1
UNIPROTKB|P09429 - symbol:HMGB1 "High mobility group prot... 182 3.8e-14 1
UNIPROTKB|F2Z594 - symbol:HMGB1 "High mobility group prot... 182 3.8e-14 1
RGD|1585821 - symbol:LOC680968 "similar to High mobility ... 182 3.8e-14 1
RGD|1586285 - symbol:LOC691220 "hypothetical protein LOC6... 182 3.8e-14 1
RGD|1588313 - symbol:LOC679451 "similar to High mobility ... 182 3.8e-14 1
RGD|1591683 - symbol:LOC681718 "similar to High mobility ... 182 3.8e-14 1
RGD|2802 - symbol:Hmgb1 "high mobility group box 1" speci... 182 3.8e-14 1
UNIPROTKB|D4A9T3 - symbol:D4A9T3 "Uncharacterized protein... 182 3.8e-14 1
UNIPROTKB|P07156 - symbol:HMGB1 "High mobility group prot... 182 3.8e-14 1
UNIPROTKB|P17741 - symbol:HMGB2 "High mobility group prot... 181 4.9e-14 1
RGD|1589841 - symbol:LOC690940 "similar to High mobility ... 181 4.9e-14 1
RGD|1593466 - symbol:LOC689398 "similar to High mobility ... 181 4.9e-14 1
UNIPROTKB|P12682 - symbol:HMGB1 "High mobility group prot... 181 4.9e-14 1
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein... 181 4.9e-14 1
UNIPROTKB|E9PES6 - symbol:HMGB3 "High mobility group prot... 160 4.9e-14 2
UNIPROTKB|P40673 - symbol:HMGB2 "High mobility group prot... 180 6.2e-14 1
UNIPROTKB|E2QY30 - symbol:HMGB2 "Uncharacterized protein"... 180 6.2e-14 1
UNIPROTKB|P26583 - symbol:HMGB2 "High mobility group prot... 180 6.2e-14 1
RGD|1596979 - symbol:LOC678705 "hypothetical protein LOC6... 180 6.2e-14 1
UNIPROTKB|F1MF42 - symbol:LOC618297 "Uncharacterized prot... 180 6.2e-14 1
RGD|1564519 - symbol:RGD1564519 "similar to High mobility... 179 7.9e-14 1
RGD|69291 - symbol:Hmgb2 "high mobility group box 2" spec... 179 7.9e-14 1
RGD|1561694 - symbol:RGD1561694 "similar to High mobility... 179 7.9e-14 1
UNIPROTKB|P26584 - symbol:HMGB2 "High mobility group prot... 177 1.3e-13 1
MGI|MGI:96157 - symbol:Hmgb2 "high mobility group box 2" ... 175 2.1e-13 1
UNIPROTKB|P0C6E5 - symbol:P0C6E5 "Putative high mobility ... 174 2.7e-13 1
RGD|1587112 - symbol:Hmg1l1 "high-mobility group (nonhist... 174 2.7e-13 1
UNIPROTKB|B2RPK0 - symbol:HMGB1P1 "Putative high mobility... 171 5.6e-13 1
UNIPROTKB|J9P699 - symbol:HMGB1 "High mobility group prot... 169 9.1e-13 1
UNIPROTKB|Q5T7C4 - symbol:HMGB1 "High mobility group prot... 169 9.1e-13 1
RGD|1589528 - symbol:LOC679344 "similar to High mobility ... 168 1.2e-12 1
RGD|1592627 - symbol:LOC685520 "similar to High mobility ... 168 1.2e-12 1
UNIPROTKB|F6QYV9 - symbol:SSRP1 "Uncharacterized protein"... 177 1.8e-12 1
RGD|1563668 - symbol:RGD1563668 "similar to High mobility... 166 1.9e-12 1
UNIPROTKB|J9NYX4 - symbol:SSRP1 "Uncharacterized protein"... 175 2.0e-12 1
UNIPROTKB|I3LLA8 - symbol:SSRP1 "Uncharacterized protein"... 176 2.3e-12 1
UNIPROTKB|F1Q2J2 - symbol:SSRP1 "Uncharacterized protein"... 175 3.0e-12 1
UNIPROTKB|E1BIF8 - symbol:E1BIF8 "Uncharacterized protein... 164 3.1e-12 1
RGD|1588759 - symbol:Hmgb1-ps3 "high mobility group box 1... 163 3.9e-12 1
POMBASE|SPAC57A10.09c - symbol:nhp6 "High-mobility group ... 163 3.9e-12 1
MGI|MGI:107912 - symbol:Ssrp1 "structure specific recogni... 173 4.9e-12 1
UNIPROTKB|Q08945 - symbol:SSRP1 "FACT complex subunit SSR... 173 4.9e-12 1
RGD|621143 - symbol:Ssrp1 "structure specific recognition... 173 4.9e-12 1
UNIPROTKB|Q04931 - symbol:Ssrp1 "FACT complex subunit SSR... 173 4.9e-12 1
UNIPROTKB|B6ZLK1 - symbol:SSRP1 "Structure-specific recog... 172 6.2e-12 1
UNIPROTKB|Q04678 - symbol:SSRP1 "FACT complex subunit SSR... 172 6.2e-12 1
RGD|1560584 - symbol:RGD1560584 "similar to High mobility... 161 6.4e-12 1
TAIR|locus:2136103 - symbol:3xHMG-box1 "3xHigh Mobility G... 166 1.2e-11 1
ZFIN|ZDB-GENE-050417-290 - symbol:hmgb3b "high-mobility g... 158 1.3e-11 1
GENEDB_PFALCIPARUM|MAL8P1.72 - symbol:MAL8P1.72 "high mob... 158 1.3e-11 1
UNIPROTKB|Q8IB14 - symbol:PfHMGB2 "High mobility group pr... 158 1.3e-11 1
TAIR|locus:2128504 - symbol:3xHMG-box2 "3xHigh Mobility G... 164 2.2e-11 1
CGD|CAF0007020 - symbol:NHP6A species:5476 "Candida albic... 155 2.8e-11 1
FB|FBgn0010228 - symbol:HmgZ "HMG protein Z" species:7227... 155 2.8e-11 1
GENEDB_PFALCIPARUM|PFL0145c - symbol:PFL0145c "high mobil... 155 2.8e-11 1
UNIPROTKB|Q8I616 - symbol:HMGB1 "High mobility group prot... 155 2.8e-11 1
UNIPROTKB|Q9UVL1 - symbol:NHP6 "Non-histone chromosomal p... 155 2.8e-11 1
UNIPROTKB|F1N1P2 - symbol:F1N1P2 "Uncharacterized protein... 154 3.5e-11 1
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer... 154 3.5e-11 1
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ... 154 3.5e-11 1
TAIR|locus:2098413 - symbol:HMG "high mobility group" spe... 164 3.9e-11 1
WB|WBGene00001974 - symbol:hmg-4 species:6239 "Caenorhabd... 164 4.4e-11 1
UNIPROTKB|D6R9A6 - symbol:HMGB2 "High mobility group prot... 152 5.8e-11 1
UNIPROTKB|F1M1H9 - symbol:F1M1H9 "Uncharacterized protein... 151 7.4e-11 1
ZFIN|ZDB-GENE-030131-8480 - symbol:hmgb1b "high-mobility ... 150 9.4e-11 1
SGD|S000002157 - symbol:NHP6B "High-mobility group (HMG) ... 148 1.5e-10 1
RGD|1594733 - symbol:LOC690521 "similar to High mobility ... 146 2.5e-10 1
UNIPROTKB|Q9W602 - symbol:ssrp1 "FACT complex subunit SSR... 155 4.0e-10 1
SGD|S000004676 - symbol:ABF2 "Mitochondrial DNA-binding p... 143 5.2e-10 1
UNIPROTKB|F1M607 - symbol:F1M607 "Uncharacterized protein... 143 5.2e-10 1
MGI|MGI:1916567 - symbol:Hmgb4 "high-mobility group box 4... 142 6.6e-10 1
UNIPROTKB|Q32L34 - symbol:HMGB4 "High mobility group prot... 142 6.6e-10 1
FB|FBgn0004362 - symbol:HmgD "High mobility group protein... 142 6.6e-10 1
UNIPROTKB|Q5T7C6 - symbol:HMGB1 "High mobility group prot... 140 1.1e-09 1
UNIPROTKB|Q8WW32 - symbol:HMGB4 "High mobility group prot... 140 1.1e-09 1
UNIPROTKB|G4MS97 - symbol:MGG_04489 "Non-histone chromoso... 140 1.1e-09 1
UNIPROTKB|F1LVZ2 - symbol:F1LVZ2 "Uncharacterized protein... 138 1.8e-09 1
POMBASE|SPBC28F2.11 - symbol:SPBC28F2.11 "HMG box protein... 143 1.8e-09 1
WARNING: Descriptions of 286 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:505006135 [details] [associations]
symbol:HMGB2 "high mobility group B2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009651
"response to salt stress" evidence=RCA] [GO:0046686 "response to
cadmium ion" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 EMBL:AC069251 GO:GO:0003700 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0006333 HSSP:P07155 EMBL:Y14072 EMBL:AF370248
EMBL:AY063064 EMBL:AK118543 EMBL:AB493468 EMBL:AY084731
IPI:IPI00532636 IPI:IPI00657279 IPI:IPI00846437 PIR:F86339
PIR:T51597 RefSeq:NP_001031074.1 RefSeq:NP_001077569.1
RefSeq:NP_564123.1 UniGene:At.21298 ProteinModelPortal:O49596
SMR:O49596 STRING:O49596 PaxDb:O49596 PRIDE:O49596
EnsemblPlants:AT1G20693.1 GeneID:838658 KEGG:ath:AT1G20693
TAIR:At1g20693 HOGENOM:HOG000197860 InParanoid:O49596 OMA:YVAKANK
PhylomeDB:O49596 ProtClustDB:CLSN2687884 Genevestigator:O49596
GO:GO:0030527 Uniprot:O49596
Length = 144
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 74/115 (64%), Positives = 91/115 (79%)
Query: 1 MKGGKSKSDTRNAKLSVNXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV DPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN++ EG K
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK 115
>TAIR|locus:2053893 [details] [associations]
symbol:HMGB4 "high mobility group B4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006084 "acetyl-CoA metabolic
process" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005829
GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0000785 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006333 EMBL:AC007584 HOGENOM:HOG000197860 GO:GO:0030527
eggNOG:NOG320947 EMBL:Y14074 EMBL:F20020 EMBL:AF370150
EMBL:AF370562 EMBL:AY150467 EMBL:AK317044 EMBL:AY086336
IPI:IPI00516334 IPI:IPI00656969 PIR:F84553 PIR:T51596
RefSeq:NP_001031364.2 RefSeq:NP_001077909.1 RefSeq:NP_179347.1
UniGene:At.481 HSSP:P11632 ProteinModelPortal:Q42344 SMR:Q42344
STRING:Q42344 PaxDb:Q42344 PRIDE:Q42344 EnsemblPlants:AT2G17560.1
EnsemblPlants:AT2G17560.2 GeneID:816263 KEGG:ath:AT2G17560
TAIR:At2g17560 InParanoid:Q42344 OMA:LANPNNK PhylomeDB:Q42344
ProtClustDB:CLSN2683898 Genevestigator:Q42344 Uniprot:Q42344
Length = 138
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 56/114 (49%), Positives = 76/114 (66%)
Query: 1 MKGGKSKSDTRNAKLSVNXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGG+SK++ + + DPN+PKRP SAFFVF+E+FR+++ +
Sbjct: 1 MKGGESKAEATSTDQRLKTRGRKAGKKTKK---DPNQPKRPPSAFFVFLEDFRKEFNLAN 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 114
P NKSVA VGKA G +WK+M++ DKAPYVAKAE RK EY K+++ YN + A GT
Sbjct: 58 PNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGT 111
>TAIR|locus:2128003 [details] [associations]
symbol:HMGB5 "high mobility group B5" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0000785 GO:GO:0003700 GO:GO:0003682 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006333 EMBL:AL161587 EMBL:AL031135 HOGENOM:HOG000197860
GO:GO:0030527 HSSP:P11632 EMBL:Y14075 EMBL:AK317173 EMBL:BT025597
EMBL:AY085615 IPI:IPI00535971 PIR:T04662 RefSeq:NP_195282.1
UniGene:At.482 ProteinModelPortal:O49597 SMR:O49597 STRING:O49597
PaxDb:O49597 PRIDE:O49597 EnsemblPlants:AT4G35570.1 GeneID:829709
KEGG:ath:AT4G35570 TAIR:At4g35570 InParanoid:O49597 OMA:YNMELAN
PhylomeDB:O49597 ProtClustDB:CLSN2916185 Genevestigator:O49597
Uniprot:O49597
Length = 125
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 41/82 (50%), Positives = 61/82 (74%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+PK+P S FFVF+++FR+++ +P NKSV VG+A G+KWK+M+E ++AP+VAK++
Sbjct: 30 DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQ 89
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+K EY M+ YN A G K
Sbjct: 90 SKKTEYAVTMQQYNMELANGNK 111
>MGI|MGI:1098219 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0045578 "negative regulation of B cell differentiation"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:1098219 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045638
Pfam:PF09011 GO:GO:0045578 HOGENOM:HOG000197861 HOVERGEN:HBG009000
OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149 KO:K11296 EMBL:AF022465
EMBL:BC011276 EMBL:BC083352 IPI:IPI00228879 RefSeq:NP_032279.1
UniGene:Mm.336087 ProteinModelPortal:O54879 SMR:O54879
STRING:O54879 PhosphoSite:O54879 PaxDb:O54879 PRIDE:O54879
Ensembl:ENSMUST00000015361 Ensembl:ENSMUST00000072699
Ensembl:ENSMUST00000088874 Ensembl:ENSMUST00000114582 GeneID:15354
KEGG:mmu:15354 InParanoid:O54879 NextBio:287964 Bgee:O54879
CleanEx:MM_HMGB3 Genevestigator:O54879
GermOnline:ENSMUSG00000015217 Uniprot:O54879
Length = 200
Score = 189 (71.6 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 38/83 (45%), Positives = 52/83 (62%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PYV KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ +Y + + +G K
Sbjct: 148 KLKEKYEKDVADYKSKGKFDGAK 170
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ KV Y+++MK+Y A+G K
Sbjct: 65 KADKVRYDREMKDYG--PAKGGK 85
Score = 34 (17.0 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 2 KGGKSKSDTRNAK 14
KGGK K D K
Sbjct: 82 KGGKKKKDPNAPK 94
>UNIPROTKB|F1RQ19 [details] [associations]
symbol:LOC100517745 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 KO:K11296 OMA:DNEKQPY
EMBL:CU929821 RefSeq:XP_003135516.1 UniGene:Ssc.27311
Ensembl:ENSSSCT00000013934 GeneID:100517745 KEGG:ssc:100517745
Uniprot:F1RQ19
Length = 202
Score = 189 (71.6 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 37/83 (44%), Positives = 53/83 (63%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ +Y + + +G K
Sbjct: 148 KLKEKYEKDVADYKSKGKFDGAK 170
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ KV Y+++MK+Y A+G K
Sbjct: 65 KADKVRYDREMKDYG--PAKGGK 85
Score = 34 (17.0 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 2 KGGKSKSDTRNAK 14
KGGK K D K
Sbjct: 82 KGGKKKKDPNAPK 94
>RGD|1564407 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
cell differentiation" evidence=ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
Genevestigator:B0BN99 Uniprot:B0BN99
Length = 200
Score = 188 (71.2 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 37/83 (44%), Positives = 53/83 (63%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYMTKAA 147
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ +Y + + +G K
Sbjct: 148 KLKEKYEKDVADYKSKGKFDGAK 170
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ KV Y+++MK+Y A+G K
Sbjct: 65 KADKVRYDREMKDYG--PAKGGK 85
Score = 34 (17.0 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 2 KGGKSKSDTRNAK 14
KGGK K D K
Sbjct: 82 KGGKKKKDPNAPK 94
>UNIPROTKB|Q32L31 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9913
"Bos taurus" [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006310
GO:GO:0003690 Pfam:PF09011 HSSP:P48431 HOGENOM:HOG000197861
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2
eggNOG:NOG320947 EMBL:BC109793 IPI:IPI00883385
RefSeq:NP_001069753.2 RefSeq:NP_001106728.1 UniGene:Bt.62966
ProteinModelPortal:Q32L31 SMR:Q32L31 Ensembl:ENSBTAT00000005793
Ensembl:ENSBTAT00000006785 GeneID:613729 KEGG:bta:613729 CTD:3149
InParanoid:Q32L31 KO:K11296 OMA:DNEKQPY NextBio:20898733
ArrayExpress:Q32L31 Uniprot:Q32L31
Length = 200
Score = 188 (71.2 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 37/83 (44%), Positives = 53/83 (63%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ +Y + + +G K
Sbjct: 148 KLKEKYEKDVADYKSKGKFDGAK 170
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ KV Y+++MK+Y A+G K
Sbjct: 65 KADKVRYDREMKDYG--PAKGGK 85
Score = 34 (17.0 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 2 KGGKSKSDTRNAK 14
KGGK K D K
Sbjct: 82 KGGKKKKDPNAPK 94
>UNIPROTKB|E7EQU1 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00640781
ProteinModelPortal:E7EQU1 SMR:E7EQU1 PRIDE:E7EQU1
Ensembl:ENST00000455596 ArrayExpress:E7EQU1 Bgee:E7EQU1
Uniprot:E7EQU1
Length = 193
Score = 188 (71.2 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 36/83 (43%), Positives = 53/83 (63%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ +Y + + +G K
Sbjct: 148 KLKEKYEKDVADYKSKGKFDGAK 170
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ KV Y+++MK+Y A+G K
Sbjct: 65 KADKVRYDREMKDYG--PAKGGK 85
Score = 34 (17.0 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 2 KGGKSKSDTRNAK 14
KGGK K D K
Sbjct: 82 KGGKKKKDPNAPK 94
>UNIPROTKB|E7ES08 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00643317
ProteinModelPortal:E7ES08 SMR:E7ES08 PRIDE:E7ES08
Ensembl:ENST00000419110 ArrayExpress:E7ES08 Bgee:E7ES08
Uniprot:E7ES08
Length = 188
Score = 188 (71.2 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 36/83 (43%), Positives = 53/83 (63%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ +Y + + +G K
Sbjct: 148 KLKEKYEKDVADYKSKGKFDGAK 170
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ KV Y+++MK+Y A+G K
Sbjct: 65 KADKVRYDREMKDYG--PAKGGK 85
Score = 34 (17.0 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 2 KGGKSKSDTRNAK 14
KGGK K D K
Sbjct: 82 KGGKKKKDPNAPK 94
>UNIPROTKB|O15347 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0003690 "double-stranded DNA binding"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=TAS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0007275 GO:GO:0005634 GO:GO:0005694 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006310 GO:GO:0003690 Pfam:PF09011 HOGENOM:HOG000197861
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149
KO:K11296 OMA:DNEKQPY EMBL:Y10043 EMBL:AF003626 EMBL:BC070482
IPI:IPI00217477 RefSeq:NP_005333.2 UniGene:Hs.19114 PDB:2EQZ
PDB:2YQI PDBsum:2EQZ PDBsum:2YQI ProteinModelPortal:O15347
SMR:O15347 IntAct:O15347 STRING:O15347 PhosphoSite:O15347
PaxDb:O15347 PeptideAtlas:O15347 PRIDE:O15347 DNASU:3149
Ensembl:ENST00000325307 Ensembl:ENST00000448905 GeneID:3149
KEGG:hsa:3149 UCSC:uc004fep.3 GeneCards:GC0XP150148 HGNC:HGNC:5004
MIM:300193 neXtProt:NX_O15347 PharmGKB:PA35092 InParanoid:O15347
PhylomeDB:O15347 EvolutionaryTrace:O15347 GenomeRNAi:3149
NextBio:12480 ArrayExpress:O15347 Bgee:O15347 CleanEx:HS_HMGB3
Genevestigator:O15347 GermOnline:ENSG00000029993 Uniprot:O15347
Length = 200
Score = 188 (71.2 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 36/83 (43%), Positives = 53/83 (63%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ +Y + + +G K
Sbjct: 148 KLKEKYEKDVADYKSKGKFDGAK 170
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ KV Y+++MK+Y A+G K
Sbjct: 65 KADKVRYDREMKDYG--PAKGGK 85
Score = 34 (17.0 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 2 KGGKSKSDTRNAK 14
KGGK K D K
Sbjct: 82 KGGKKKKDPNAPK 94
>UNIPROTKB|E1BIU3 [details] [associations]
symbol:LOC532409 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02004182
IPI:IPI00839111 RefSeq:XP_003585778.1 Ensembl:ENSBTAT00000044962
GeneID:532409 KEGG:bta:532409 OMA:FLENTRC ArrayExpress:E1BIU3
Uniprot:E1BIU3
Length = 186
Score = 188 (71.2 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 37/83 (44%), Positives = 53/83 (63%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ +Y + + +G K
Sbjct: 148 KLKEKYEKDVADYKSKGKFDGAK 170
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPY--VA 90
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + +A
Sbjct: 5 DPKKPKGKMSAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIA 64
Query: 91 KAEKRKVEYEKDMKNYNRRQAEGTK 115
KA+K V Y+++MK+Y A+G K
Sbjct: 65 KADK--VRYDREMKDYG--PAKGGK 85
Score = 34 (17.0 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 2 KGGKSKSDTRNAK 14
KGGK K D K
Sbjct: 82 KGGKKKKDPNAPK 94
>UNIPROTKB|P40618 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
HOVERGEN:HBG009000 UniGene:Gga.4513 CTD:3149 KO:K11296 EMBL:X63463
IPI:IPI00580706 PIR:S22359 RefSeq:NP_990626.2
ProteinModelPortal:P40618 SMR:P40618 STRING:P40618 GeneID:396232
KEGG:gga:396232 NextBio:20816284 Uniprot:P40618
Length = 202
Score = 186 (70.5 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 38/83 (45%), Positives = 52/83 (62%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ +Y + + +G K
Sbjct: 148 KLKEKYEKDVADYKSKGKFDGAK 170
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +KA + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ KV Y+++MK+Y A+G K
Sbjct: 65 KADKVRYDREMKDYG--PAKGGK 85
Score = 34 (17.0 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 2 KGGKSKSDTRNAK 14
KGGK K D K
Sbjct: 82 KGGKKKKDPNAPK 94
>UNIPROTKB|J9NVS3 [details] [associations]
symbol:HMGB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 OMA:DNEKQPY
EMBL:AAEX03027044 EMBL:AAEX03027045 Ensembl:ENSCAFT00000045229
Uniprot:J9NVS3
Length = 219
Score = 183 (69.5 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 37/83 (44%), Positives = 52/83 (62%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 107 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 165
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ +Y + + +G K
Sbjct: 166 KLKEKYEKDVADYKSKGKFDGAK 188
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A
Sbjct: 23 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 82
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ KV Y+++MK+Y A+G K
Sbjct: 83 KADKVRYDREMKDYG--PAKGGK 103
Score = 34 (17.0 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 2 KGGKSKSDTRNAK 14
KGGK K D K
Sbjct: 100 KGGKKKKDPNAPK 112
>UNIPROTKB|P36194 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:D14314 IPI:IPI00591130
PIR:I50254 UniGene:Gga.4513 ProteinModelPortal:P36194 SMR:P36194
STRING:P36194 PRIDE:P36194 Uniprot:P36194
Length = 201
Score = 182 (69.1 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 146
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ +Y + + +G K
Sbjct: 147 KLKEKYEKDVADYKSKGKFDGAK 169
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 31/82 (37%), Positives = 48/82 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK SA+ F++ RE++KK+ + A K E+WK+MS +KA + A+
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAK 64
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
KV Y+++MK+Y A+G K
Sbjct: 65 ADKVRYDREMKDYG--PAKGGK 84
Score = 34 (17.0 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 2 KGGKSKSDTRNAK 14
KGGK K D K
Sbjct: 81 KGGKKKKDPNAPK 93
>TAIR|locus:2154433 [details] [associations]
symbol:HMGB6 "high-mobility group box 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HSSP:P07155 EMBL:AB018110 HOGENOM:HOG000242532 EMBL:AK118688
EMBL:AY086023 IPI:IPI00542717 RefSeq:NP_568431.1 UniGene:At.31011
ProteinModelPortal:Q8LDF9 SMR:Q8LDF9 STRING:Q8LDF9 PaxDb:Q8LDF9
PRIDE:Q8LDF9 EnsemblPlants:AT5G23420.1 GeneID:832408
KEGG:ath:AT5G23420 TAIR:At5g23420 eggNOG:NOG297541
InParanoid:Q8LDF9 OMA:AFFLFMD PhylomeDB:Q8LDF9
ProtClustDB:CLSN2689854 Genevestigator:Q8LDF9 Uniprot:Q8LDF9
Length = 241
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 36/78 (46%), Positives = 53/78 (67%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEK 94
NKPKRP +AFF+FM +FR+ +K +H N S+A K GGEKWKS++E +K Y+ KA +
Sbjct: 113 NKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAE 170
Query: 95 RKVEYEKDMKNYNRRQAE 112
K EY K +++ + + E
Sbjct: 171 LKAEYNKSLESNDADEEE 188
>UNIPROTKB|F1N927 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
Length = 214
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 37/76 (48%), Positives = 46/76 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F EFR + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRR 109
K K +YEKD+ Y +
Sbjct: 150 KLKEKYEKDIAAYRAK 165
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K+ YEK+MKNY + E K
Sbjct: 65 KADKLRYEKEMKNYVPPKGETKK 87
>UNIPROTKB|Q9YH06 [details] [associations]
symbol:HMG1 "High mobility group 1 protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
Length = 215
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 37/76 (48%), Positives = 46/76 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F EFR + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRR 109
K K +YEKD+ Y +
Sbjct: 150 KLKEKYEKDIAAYRAK 165
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K+ YEK+MKNY + E K
Sbjct: 65 KADKLRYEKEMKNYVPPKGETKK 87
>UNIPROTKB|F1NPU8 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IEA] [GO:0032075 "positive regulation of
nuclease activity" evidence=IEA] [GO:0042056 "chemoattractant
activity" evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0045654 "positive regulation of
megakaryocyte differentiation" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0050786 "RAGE receptor binding"
evidence=IEA] [GO:0060326 "cell chemotaxis" evidence=IEA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0048471 GO:GO:0045892 GO:GO:0005615 GO:GO:0043234
GO:GO:0005730 GO:GO:0003684 GO:GO:0001938 GO:GO:0045944
GO:GO:0003700 GO:GO:0048545 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0045648 GO:GO:0045654 GO:GO:0060326 GO:GO:0000793
GO:GO:0042056 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GeneTree:ENSGT00560000076717 GO:GO:0006288 OMA:KIKNDHP
IPI:IPI00579203 EMBL:AADN02008951 Ensembl:ENSGALT00000017483
Uniprot:F1NPU8
Length = 207
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 37/76 (48%), Positives = 43/76 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K DHP S+ K GE W S DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNYNRR 109
K K +YEKD+ Y +
Sbjct: 150 KLKEKYEKDIAAYRAK 165
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A + E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>RGD|1559962 [details] [associations]
symbol:RGD1559962 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074365 Ncbi:XP_001074365
Length = 209
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 37/76 (48%), Positives = 43/76 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNYNRR 109
K K EYEKD+ Y +
Sbjct: 150 KLKEEYEKDIAAYRAK 165
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++K HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>ZFIN|ZDB-GENE-030131-341 [details] [associations]
symbol:hmgb1a "high-mobility group box 1a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
Length = 205
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 37/80 (46%), Positives = 47/80 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F EFR + K++ P S+ V K GE W +S +K PY KA
Sbjct: 90 DPNAPKRPPSAFFIFCSEFRPKVKEETP-GLSIGDVAKRLGEMWNKISSEEKQPYEKKAA 148
Query: 94 KRKVEYEKDMKNYNRRQAEG 113
K K +YEKD+ Y + G
Sbjct: 149 KLKEKYEKDIAAYRSKGKVG 168
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP+ + + K E+WK+MS +K + A
Sbjct: 4 DPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MKNY + E K
Sbjct: 64 KLDKARYEREMKNYIPPKGEKKK 86
>UNIPROTKB|P10103 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9913
"Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
cell activation" evidence=IDA] [GO:0042056 "chemoattractant
activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043280 "positive regulation of cysteine-type endopeptidase
activity involved in apoptotic process" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
Uniprot:P10103
Length = 215
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>UNIPROTKB|Q6YKA4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0043388 "positive regulation of
DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
Uniprot:Q6YKA4
Length = 215
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>UNIPROTKB|P09429 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
"calcium-dependent protein kinase regulator activity" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0045639 "positive regulation of
myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
"response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
"negative regulation of apoptotic cell clearance" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0031175 "neuron projection development" evidence=ISS]
[GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
"positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IDA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA] [GO:0005125 "cytokine activity"
evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
[GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0017053 "transcriptional repressor complex"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0070491
"repressing transcription factor binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006921 "cellular component disassembly involved in execution
phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0050918 "positive chemotaxis"
evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
Ensembl:ENST00000341423 Ensembl:ENST00000399494
Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
Length = 215
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>UNIPROTKB|F2Z594 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
clearance" evidence=IEA] [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0051384 "response to
glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045639 "positive regulation
of myeloid cell differentiation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0043280
"positive regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0010858 "calcium-dependent protein kinase regulator activity"
evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0002437 "inflammatory response to
antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
Length = 215
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>RGD|1585821 [details] [associations]
symbol:LOC680968 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
Length = 213
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>RGD|1586285 [details] [associations]
symbol:LOC691220 "hypothetical protein LOC691220" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIPAY---RAKG-KP 168
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>RGD|1588313 [details] [associations]
symbol:LOC679451 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIPAY---RAKG-KP 168
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>RGD|1591683 [details] [associations]
symbol:LOC681718 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076717 IPI:IPI00767302
Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
Uniprot:F1MA29
Length = 215
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>RGD|2802 [details] [associations]
symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
"positive regulation of protein phosphorylation" evidence=ISO]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=IDA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005615
"extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
binding" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
replication" evidence=IDA] [GO:0008201 "heparin binding"
evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
[GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
"cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=ISO] [GO:0010942 "positive
regulation of cell death" evidence=IMP] [GO:0010976 "positive
regulation of neuron projection development" evidence=IMP]
[GO:0014911 "positive regulation of smooth muscle cell migration"
evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISO]
[GO:0030295 "protein kinase activator activity" evidence=ISO]
[GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEP] [GO:0032868 "response to insulin stimulus"
evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=ISO] [GO:0034341 "response to interferon-gamma"
evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
"response to drug" evidence=IEP] [GO:0043005 "neuron projection"
evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=ISO]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=ISO] [GO:0045663 "positive regulation of myoblast
differentiation" evidence=IMP] [GO:0045819 "positive regulation of
glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046983 "protein dimerization activity"
evidence=IDA] [GO:0050727 "regulation of inflammatory response"
evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
[GO:0050831 "male-specific defense response to bacterium"
evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
[GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
"repressing transcription factor binding" evidence=ISO] [GO:0071347
"cellular response to interleukin-1" evidence=IEP] [GO:0017053
"transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
Length = 215
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>UNIPROTKB|D4A9T3 [details] [associations]
symbol:D4A9T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564375
Ensembl:ENSRNOT00000044787 Uniprot:D4A9T3
Length = 184
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>UNIPROTKB|P07156 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:10029
"Cricetulus griseus" [GO:0000793 "condensed chromosome"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
Length = 180
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 56 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 114
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 115 KLKEKYEKDIAAY---RAKG-KP 133
>UNIPROTKB|P17741 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9823
"Sus scrofa" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0008301 "DNA binding,
bending" evidence=ISS;IDA] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0006357 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:J02895 PIR:A34719
RefSeq:NP_999228.1 UniGene:Ssc.226 PDB:1J3C PDB:1J3D PDB:1J3X
PDBsum:1J3C PDBsum:1J3D PDBsum:1J3X ProteinModelPortal:P17741
SMR:P17741 GeneID:397130 KEGG:ssc:397130 EvolutionaryTrace:P17741
Uniprot:P17741
Length = 210
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 38/80 (47%), Positives = 46/80 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEG 113
K K +YEKD+ Y R + +G
Sbjct: 150 KLKEKYEKDIAAY-RAKGKG 168
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>RGD|1589841 [details] [associations]
symbol:LOC690940 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
Length = 214
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 40/83 (48%), Positives = 50/83 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTASDDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD Y +A+G KP
Sbjct: 150 KLKEKYEKDTAAY---RAKG-KP 168
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + V K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>RGD|1593466 [details] [associations]
symbol:LOC689398 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
Length = 214
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 40/83 (48%), Positives = 50/83 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTASDDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD Y +A+G KP
Sbjct: 150 KLKEKYEKDTAAY---RAKG-KP 168
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + V K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>UNIPROTKB|P12682 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
Length = 215
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKHPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>UNIPROTKB|E1BMK2 [details] [associations]
symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
OMA:EXDIAAY Uniprot:E1BMK2
Length = 215
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAVDDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 130 (50.8 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++ K HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KVDKARYEREMKTYIPPKGETKK 87
>UNIPROTKB|E9PES6 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00411540
ProteinModelPortal:E9PES6 SMR:E9PES6 Ensembl:ENST00000430118
ArrayExpress:E9PES6 Bgee:E9PES6 Uniprot:E9PES6
Length = 153
Score = 160 (61.4 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEY 99
K K +Y
Sbjct: 148 KLKEKY 153
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ KV Y+++MK+Y A+G K
Sbjct: 65 KADKVRYDREMKDYG--PAKGGK 85
Score = 34 (17.0 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 2 KGGKSKSDTRNAK 14
KGGK K D K
Sbjct: 82 KGGKKKKDPNAPK 94
>UNIPROTKB|P40673 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9913
"Bos taurus" [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=ISS]
[GO:0008301 "DNA binding, bending" evidence=ISS;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0042393
"histone binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
[GO:0060326 "cell chemotaxis" evidence=IEA] [GO:0050786 "RAGE
receptor binding" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045654 "positive regulation of megakaryocyte
differentiation" evidence=IEA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043234 "protein complex" evidence=IEA] [GO:0042056
"chemoattractant activity" evidence=IEA] [GO:0032075 "positive
regulation of nuclease activity" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0005615
GO:GO:0043234 GO:GO:0005730 GO:GO:0003684 GO:GO:0001938
GO:GO:0045944 GO:GO:0003700 GO:GO:0006357 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0007289 GO:GO:0003690
GO:GO:0003697 GO:GO:0045648 GO:GO:0045654 GO:GO:0060326
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 GO:GO:0033151 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:BC109755 IPI:IPI00689856
RefSeq:NP_001032705.1 UniGene:Bt.6397 ProteinModelPortal:P40673
SMR:P40673 STRING:P40673 PRIDE:P40673 Ensembl:ENSBTAT00000020096
GeneID:540444 KEGG:bta:540444 CTD:3148 InParanoid:P40673
OMA:KIKNDHP OrthoDB:EOG4TTGK2 NextBio:20878641 Uniprot:P40673
Length = 209
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 38/83 (45%), Positives = 47/83 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ Y + ++E K
Sbjct: 150 KLKEKYEKDIAAYRAKGKSEAGK 172
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>UNIPROTKB|E2QY30 [details] [associations]
symbol:HMGB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0060326 "cell chemotaxis"
evidence=IEA] [GO:0050786 "RAGE receptor binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045654 "positive regulation of megakaryocyte differentiation"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043234 "protein
complex" evidence=IEA] [GO:0042056 "chemoattractant activity"
evidence=IEA] [GO:0032075 "positive regulation of nuclease
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471
GO:GO:0045892 GO:GO:0005615 GO:GO:0043234 GO:GO:0005730
GO:GO:0003684 GO:GO:0001938 GO:GO:0045944 GO:GO:0003700
GO:GO:0071222 GO:GO:0048545 GO:GO:0008584 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 KO:K11295 GeneTree:ENSGT00560000076717
GO:GO:0006288 CTD:3148 OMA:KIKNDHP EMBL:AAEX03014309
RefSeq:XP_543194.2 Ensembl:ENSCAFT00000012535 GeneID:486068
KEGG:cfa:486068 NextBio:20859918 Uniprot:E2QY30
Length = 210
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 38/83 (45%), Positives = 47/83 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ Y + ++E K
Sbjct: 150 KLKEKYEKDIAAYRAKGKSEAGK 172
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>UNIPROTKB|P26583 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0007289 "spermatid nucleus differentiation"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=NAS]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006334
"nucleosome assembly" evidence=NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IDA] [GO:0001938
"positive regulation of endothelial cell proliferation"
evidence=IDA] [GO:0042056 "chemoattractant activity" evidence=IDA]
[GO:0060326 "cell chemotaxis" evidence=IDA] [GO:0050786 "RAGE
receptor binding" evidence=IGI] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=IMP] [GO:0005615 "extracellular space"
evidence=IDA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEP] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0032075 "positive
regulation of nuclease activity" evidence=IDA] [GO:0033151 "V(D)J
recombination" evidence=ISS] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=IDA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IMP] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=IMP]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006309 "apoptotic DNA fragmentation" evidence=TAS] [GO:0006915
"apoptotic process" evidence=TAS] [GO:0006921 "cellular component
disassembly involved in execution phase of apoptosis" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0050918 "positive chemotaxis" evidence=IDA]
Reactome:REACT_578 InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471 GO:GO:0045892
GO:GO:0005615 GO:GO:0043234 GO:GO:0005654 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0003690 GO:GO:0003697
EMBL:CH471056 GO:GO:0045648 GO:GO:0045654 GO:GO:0048015
GO:GO:0060326 GO:GO:0006309 GO:GO:0000793 GO:GO:0042056
GO:GO:0006334 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GO:GO:0033151 GO:GO:0006265 HOGENOM:HOG000197861 KO:K11295
HOVERGEN:HBG009000 GO:GO:0006288 HPA:HPA003506 GO:GO:0050786
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:M83665 EMBL:X62534
EMBL:BT019782 EMBL:AK311864 EMBL:BC001063 EMBL:BC100019 EMBL:Z17240
IPI:IPI00219097 PIR:A42425 PIR:S30221 RefSeq:NP_001124160.1
RefSeq:NP_001124161.1 RefSeq:NP_002120.1 UniGene:Hs.434953
ProteinModelPortal:P26583 SMR:P26583 IntAct:P26583 MINT:MINT-240190
STRING:P26583 PhosphoSite:P26583 DMDM:123374 PaxDb:P26583
PeptideAtlas:P26583 PRIDE:P26583 DNASU:3148 Ensembl:ENST00000296503
Ensembl:ENST00000438704 Ensembl:ENST00000446922 GeneID:3148
KEGG:hsa:3148 UCSC:uc003ita.3 GeneCards:GC04M174252 HGNC:HGNC:5000
MIM:163906 neXtProt:NX_P26583 PharmGKB:PA35091 InParanoid:P26583
ChiTaRS:HMGB2 GenomeRNAi:3148 NextBio:12476 PMAP-CutDB:P26583
ArrayExpress:P26583 Bgee:P26583 CleanEx:HS_HMGB2
Genevestigator:P26583 GermOnline:ENSG00000164104 Uniprot:P26583
Length = 209
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 38/83 (45%), Positives = 47/83 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ Y + ++E K
Sbjct: 150 KLKEKYEKDIAAYRAKGKSEAGK 172
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>RGD|1596979 [details] [associations]
symbol:LOC678705 "hypothetical protein LOC678705" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001053005
Ncbi:XP_001053005
Length = 214
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEIWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>UNIPROTKB|F1MF42 [details] [associations]
symbol:LOC618297 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02009820
IPI:IPI00687888 Ensembl:ENSBTAT00000027565 OMA:INTCREE
Uniprot:F1MF42
Length = 196
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 38/83 (45%), Positives = 47/83 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 80 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 138
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ Y + ++E K
Sbjct: 139 KLKEKYEKDIAAYRAKGKSEAGK 161
Score = 112 (44.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 53 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 13 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 67
>RGD|1564519 [details] [associations]
symbol:RGD1564519 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001063065 Ncbi:XP_001063065
Length = 210
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 36/76 (47%), Positives = 43/76 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNYNRR 109
K K +YEKD+ Y +
Sbjct: 150 KLKEKYEKDIAAYRAK 165
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>RGD|69291 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10116 "Rattus
norvegicus" [GO:0000793 "condensed chromosome" evidence=ISO;ISS]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005615
"extracellular space" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISO;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007049 "cell cycle" evidence=IEP]
[GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007289 "spermatid
nucleus differentiation" evidence=ISO] [GO:0007399 "nervous system
development" evidence=IDA] [GO:0008289 "lipid binding" evidence=IDA]
[GO:0008301 "DNA binding, bending" evidence=ISO;ISS] [GO:0008584
"male gonad development" evidence=ISO] [GO:0019904 "protein domain
specific binding" evidence=ISO] [GO:0031100 "organ regeneration"
evidence=IEP] [GO:0031493 "nucleosomal histone binding"
evidence=IDA] [GO:0032075 "positive regulation of nuclease activity"
evidence=ISO] [GO:0042056 "chemoattractant activity" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] [GO:0043388 "positive
regulation of DNA binding" evidence=ISO] [GO:0044212 "transcription
regulatory region DNA binding" evidence=ISO] [GO:0045648 "positive
regulation of erythrocyte differentiation" evidence=ISO] [GO:0045654
"positive regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO;IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
[GO:0048545 "response to steroid hormone stimulus" evidence=ISO]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive regulation
of DNA metabolic process" evidence=IMP] [GO:0060326 "cell
chemotaxis" evidence=ISO] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:69291
GO:GO:0005634 GO:GO:0048471 GO:GO:0045893 GO:GO:0007399
GO:GO:0031100 GO:GO:0006357 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0007049 GO:GO:0008289 GO:GO:0003690 GO:GO:0000793
GO:GO:0051054 GO:GO:0031493 Pfam:PF09011 HOGENOM:HOG000197861
KO:K11295 GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000
GO:GO:0006288 CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:D84418
EMBL:BC078866 EMBL:BC089854 EMBL:BC107455 IPI:IPI00876582
RefSeq:NP_058883.1 RefSeq:XP_001063065.2 RefSeq:XP_573272.3
UniGene:Rn.218982 UniGene:Rn.2874 ProteinModelPortal:P52925
SMR:P52925 STRING:P52925 DNASU:29395 Ensembl:ENSRNOT00000017635
Ensembl:ENSRNOT00000046874 GeneID:29395 GeneID:498072 KEGG:rno:29395
KEGG:rno:498072 UCSC:RGD:69291 CTD:498072 InParanoid:P52925
NextBio:609027 Genevestigator:P52925 GermOnline:ENSRNOG00000013167
GermOnline:ENSRNOG00000030313 Uniprot:P52925
Length = 210
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 36/76 (47%), Positives = 43/76 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNYNRR 109
K K +YEKD+ Y +
Sbjct: 150 KLKEKYEKDIAAYRAK 165
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>RGD|1561694 [details] [associations]
symbol:RGD1561694 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_003752741 Ncbi:XP_003752789
Length = 209
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 36/76 (47%), Positives = 43/76 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNYNRR 109
K K +YEKD+ Y +
Sbjct: 150 KLKEKYEKDIAAYRAK 165
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S + F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSLYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>UNIPROTKB|P26584 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0048471
GO:GO:0006357 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:M83235 EMBL:M80574 IPI:IPI00579203
PIR:JC1114 PIR:JC1129 RefSeq:NP_990817.1 UniGene:Gga.4061
ProteinModelPortal:P26584 SMR:P26584 STRING:P26584 PRIDE:P26584
GeneID:396482 KEGG:gga:396482 eggNOG:NOG320947 InParanoid:P26584
NextBio:20816521 Uniprot:P26584
Length = 207
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 36/76 (47%), Positives = 42/76 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K DHP S+ K GE W DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQLAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNYNRR 109
K K +YEKD+ Y +
Sbjct: 150 KLKEKYEKDIAAYRAK 165
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A + E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>MGI|MGI:96157 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10090 "Mus
musculus" [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISO]
[GO:0005615 "extracellular space" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IC] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006288 "base-excision
repair, DNA ligation" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007289 "spermatid
nucleus differentiation" evidence=IMP] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0008289 "lipid binding"
evidence=ISO] [GO:0008301 "DNA binding, bending" evidence=ISO]
[GO:0008584 "male gonad development" evidence=IMP] [GO:0019904
"protein domain specific binding" evidence=IPI] [GO:0031493
"nucleosomal histone binding" evidence=ISO] [GO:0032075 "positive
regulation of nuclease activity" evidence=ISO] [GO:0042056
"chemoattractant activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0043234 "protein
complex" evidence=ISO] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISO] [GO:0045648 "positive regulation
of erythrocyte differentiation" evidence=ISO] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IMP]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0048545 "response to steroid hormone stimulus" evidence=IMP]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive
regulation of DNA metabolic process" evidence=ISO] [GO:0060326
"cell chemotaxis" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:96157 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0043066
GO:GO:0005615 GO:GO:0043234 GO:GO:0005730 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 HOGENOM:HOG000197861 KO:K11295
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:X67668 EMBL:Z46757
EMBL:AF267733 EMBL:AK003773 EMBL:AK008443 EMBL:AK012568
EMBL:AK135296 EMBL:AK135297 EMBL:AK146212 EMBL:BC002050
EMBL:BC046759 EMBL:BC083108 IPI:IPI00462291 PIR:S26062 PIR:S54774
RefSeq:NP_032278.1 UniGene:Mm.279998 UniGene:Mm.470487
UniGene:Mm.490424 ProteinModelPortal:P30681 SMR:P30681 DIP:DIP-899N
MINT:MINT-4097539 STRING:P30681 PhosphoSite:P30681 PaxDb:P30681
PRIDE:P30681 Ensembl:ENSMUST00000067925 GeneID:97165 KEGG:mmu:97165
UCSC:uc009lsx.2 InParanoid:P30681 NextBio:352589 Bgee:P30681
CleanEx:MM_HMGB2 Genevestigator:P30681
GermOnline:ENSMUSG00000054717 Uniprot:P30681
Length = 210
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 38/83 (45%), Positives = 47/83 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ Y + ++E K
Sbjct: 150 KLKEKYEKDIAAYRAKGKSEAGK 172
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>UNIPROTKB|P0C6E5 [details] [associations]
symbol:P0C6E5 "Putative high mobility group protein B3-like
protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC067852 Pfam:PF09011
IPI:IPI00888935 ProteinModelPortal:P0C6E5 SMR:P0C6E5 STRING:P0C6E5
PhosphoSite:P0C6E5 DMDM:205539816 PaxDb:P0C6E5 PRIDE:P0C6E5
neXtProt:NX_P0C6E5 InParanoid:P0C6E5 PhylomeDB:P0C6E5
Genevestigator:P0C6E5 Uniprot:P0C6E5
Length = 187
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EF + K +P + V K GE WK++++++K PY+ +A
Sbjct: 88 DPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNLNDSEKQPYITQAA 146
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD+ Y + +++G K
Sbjct: 147 KLKEKYEKDVAVYKSKGKSDGAK 169
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 31/83 (37%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +PK + A K E+WK+MS+ +K+ + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ KV Y++++K+Y A+G K
Sbjct: 65 KADKVHYDQEIKDYG--PAKGGK 85
>RGD|1587112 [details] [associations]
symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
Length = 215
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 39/83 (46%), Positives = 50/83 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWTNTAADDKQPYGKMAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPHKGETKK 87
>UNIPROTKB|B2RPK0 [details] [associations]
symbol:HMGB1P1 "Putative high mobility group protein
B1-like 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 EMBL:AL160176 UniGene:Hs.131543
EMBL:BC137482 EMBL:BC137483 IPI:IPI00022796
ProteinModelPortal:B2RPK0 SMR:B2RPK0 STRING:B2RPK0 PaxDb:B2RPK0
PRIDE:B2RPK0 GeneCards:GC20M056062 HGNC:HGNC:4993
neXtProt:NX_B2RPK0 InParanoid:B2RPK0 OrthoDB:EOG4KWJV1
PhylomeDB:B2RPK0 NextBio:39267 Genevestigator:B2RPK0 Uniprot:B2RPK0
Length = 211
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 39/83 (46%), Positives = 49/83 (59%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK P KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPGEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y QA+G KP
Sbjct: 150 KLKEKYEKDIAAY---QAKG-KP 168
Score = 122 (48.0 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK H + + + E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE+ MK Y + E K
Sbjct: 65 KADKTHYERQMKTYIPPKGETKK 87
>UNIPROTKB|J9P699 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
EMBL:AAEX03014229 EMBL:AAEX03014230 Ensembl:ENSCAFT00000046727
Uniprot:J9P699
Length = 196
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 34/68 (50%), Positives = 42/68 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEK 101
K K +YEK
Sbjct: 150 KLKEKYEK 157
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>UNIPROTKB|Q5T7C4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:AL353648 UniGene:Hs.434102
UniGene:Hs.593339 UniGene:Hs.596078 UniGene:Hs.741195
HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681 IPI:IPI00644653
SMR:Q5T7C4 Ensembl:ENST00000326004 Ensembl:ENST00000399489
UCSC:uc001usv.3 Uniprot:Q5T7C4
Length = 158
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 34/68 (50%), Positives = 42/68 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEK 101
K K +YEK
Sbjct: 150 KLKEKYEK 157
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>RGD|1589528 [details] [associations]
symbol:LOC679344 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
Length = 215
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 38/83 (45%), Positives = 49/83 (59%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK P KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPCEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 127 (49.8 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>RGD|1592627 [details] [associations]
symbol:LOC685520 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
Length = 215
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 38/83 (45%), Positives = 49/83 (59%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK P KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPCEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 127 (49.8 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>UNIPROTKB|F6QYV9 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 InterPro:IPR024954 OMA:PVEVKKG EMBL:DAAA02041723
IPI:IPI00699243 UniGene:Bt.5242 Ensembl:ENSBTAT00000000486
Uniprot:F6QYV9
Length = 709
Score = 177 (67.4 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 37/82 (45%), Positives = 48/82 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP SV + K GE WK MS+ K + KAE
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWKGMSKEKKEEWDRKAE 601
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ EYEK MK Y + E +K
Sbjct: 602 DARREYEKAMKEYEGGRGESSK 623
>RGD|1563668 [details] [associations]
symbol:RGD1563668 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074778 Ncbi:XP_001074778
Length = 211
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 38/83 (45%), Positives = 49/83 (59%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PK P SAFF+F E+R + K +HP S+ V K GE W + + DK PY A
Sbjct: 91 DPNAPKTPPSAFFLFCSEYRPKIKGEHP-GLSIGDVVKKLGEMWTNTAADDKQPYEKMAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 128 (50.1 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYISPKGETKK 87
>UNIPROTKB|J9NYX4 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 InterPro:IPR024954 EMBL:AAEX03011448
Ensembl:ENSCAFT00000049552 Uniprot:J9NYX4
Length = 551
Score = 175 (66.7 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 36/82 (43%), Positives = 48/82 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE
Sbjct: 385 DPNAPKRPMSAYMLWLNASREKIKADHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 443
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ EYEK MK Y + E +K
Sbjct: 444 DARREYEKAMKEYEGGRGESSK 465
>UNIPROTKB|I3LLA8 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 KO:K09272 InterPro:IPR024954 OMA:PVEVKKG CTD:6749
EMBL:FP312857 RefSeq:XP_003353912.1 Ensembl:ENSSSCT00000023703
GeneID:100624907 KEGG:ssc:100624907 Uniprot:I3LLA8
Length = 709
Score = 176 (67.0 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 36/82 (43%), Positives = 48/82 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ EYEK MK Y + E +K
Sbjct: 602 DARREYEKAMKEYEGGRGESSK 623
>UNIPROTKB|F1Q2J2 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG EMBL:AAEX03011448
Ensembl:ENSCAFT00000012707 Uniprot:F1Q2J2
Length = 710
Score = 175 (66.7 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 36/82 (43%), Positives = 48/82 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE
Sbjct: 542 DPNAPKRPMSAYMLWLNASREKIKADHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 600
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ EYEK MK Y + E +K
Sbjct: 601 DARREYEKAMKEYEGGRGESSK 622
>UNIPROTKB|E1BIF8 [details] [associations]
symbol:E1BIF8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02073284
IPI:IPI00728960 Ensembl:ENSBTAT00000006714 OMA:RAISEMW
Uniprot:E1BIF8
Length = 194
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 36/82 (43%), Positives = 50/82 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EF + K +P S+ V K GE W ++S++ K YV K
Sbjct: 86 DPNAPKRPPSGFFLFFSEFCSEIKSTNP-GISIGDVAKKLGEMWNNLSDSKKQLYVNKDA 144
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
K K +YEKD+ +Y + + +GTK
Sbjct: 145 KLK-KYEKDVADY-KGEFDGTK 164
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK SA F++ R+++KK + A K E+WK+MS +K+ + A+
Sbjct: 5 DPEKPKGKMSAHAFFVQMCRKKHKKTPKVPVNFAEFSKKCSERWKTMSGKEKSTFDEMAK 64
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
KV Y ++MK+Y A+G K
Sbjct: 65 ADKVHYNQEMKDYG--SAKGGK 84
>RGD|1588759 [details] [associations]
symbol:Hmgb1-ps3 "high mobility group box 1, pseudogene 3"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1588759 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
OrthoDB:EOG4KWJV1 GeneTree:ENSGT00560000076717 IPI:IPI00366734
Ensembl:ENSRNOT00000046626 Uniprot:D3ZGW6
Length = 212
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 38/83 (45%), Positives = 49/83 (59%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP AFF+F E+R + K +HP S+ V K GE W + + DK P KA
Sbjct: 91 DPNAPKRPPLAFFLFCSEYRPKIKGEHP-GLSIGDVVKKLGEMWNNTAVDDKQPCEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ +E++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCQEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>POMBASE|SPAC57A10.09c [details] [associations]
symbol:nhp6 "High-mobility group non-histone chromatin
protein (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
ProteinModelPortal:P87057 STRING:P87057
EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
NextBio:20803918 Uniprot:P87057
Length = 108
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SAF F E RE+ K D+P + + +G G++WK ++ ++ PY KA
Sbjct: 12 DPNTPKRNMSAFMFFSIENREKMKTDNP-DATFGQLGSLLGKRWKELTSTEREPYEEKAR 70
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++ K Y+ + A G K
Sbjct: 71 QDKERYERERKEYDTKLANGEK 92
>MGI|MGI:107912 [details] [associations]
symbol:Ssrp1 "structure specific recognition protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 MGI:MGI:107912 Pfam:PF00505
Pfam:PF03531 GO:GO:0005737 GO:GO:0005694 GO:GO:0005730
GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
eggNOG:COG5165 KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790
OMA:PVEVKKG CTD:6749 HOVERGEN:HBG002932 OrthoDB:EOG41VK2K
EMBL:S50213 EMBL:AK146446 EMBL:AK146585 EMBL:AK146607 EMBL:AK151584
EMBL:AK158552 EMBL:BC042502 EMBL:BC096682 IPI:IPI00407571
IPI:IPI00652593 PIR:A41265 RefSeq:NP_001129553.1 RefSeq:NP_892035.2
UniGene:Mm.219793 ProteinModelPortal:Q08943 SMR:Q08943
IntAct:Q08943 STRING:Q08943 PhosphoSite:Q08943 PaxDb:Q08943
PRIDE:Q08943 Ensembl:ENSMUST00000077798 Ensembl:ENSMUST00000168266
GeneID:20833 KEGG:mmu:20833 NextBio:299579 Bgee:Q08943
CleanEx:MM_SSRP1 Genevestigator:Q08943
GermOnline:ENSMUSG00000027067 Uniprot:Q08943
Length = 708
Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 35/82 (42%), Positives = 48/82 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ EYEK MK Y + + +K
Sbjct: 602 DARREYEKAMKEYEGGRGDSSK 623
>UNIPROTKB|Q08945 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005694 GO:GO:0005654
GO:GO:0016032 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006368 Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 OMA:PVEVKKG CTD:6749
HOVERGEN:HBG002932 OrthoDB:EOG41VK2K EMBL:M86737 EMBL:BC005116
EMBL:BC091486 IPI:IPI00005154 PIR:A41976 RefSeq:NP_003137.1
UniGene:Hs.523680 ProteinModelPortal:Q08945 SMR:Q08945 DIP:DIP-169N
IntAct:Q08945 MINT:MINT-5004485 STRING:Q08945 PhosphoSite:Q08945
DMDM:730840 PaxDb:Q08945 PeptideAtlas:Q08945 PRIDE:Q08945
DNASU:6749 Ensembl:ENST00000278412 GeneID:6749 KEGG:hsa:6749
UCSC:uc001njt.3 GeneCards:GC11M057093 HGNC:HGNC:11327 HPA:HPA002697
MIM:604328 neXtProt:NX_Q08945 PharmGKB:PA36151 InParanoid:Q08945
PhylomeDB:Q08945 ChiTaRS:SSRP1 GenomeRNAi:6749 NextBio:26328
PMAP-CutDB:Q08945 ArrayExpress:Q08945 Bgee:Q08945 CleanEx:HS_SSRP1
Genevestigator:Q08945 GermOnline:ENSG00000149136 Uniprot:Q08945
Length = 709
Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 35/82 (42%), Positives = 48/82 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ +YEK MK Y + E +K
Sbjct: 602 DARRDYEKAMKEYEGGRGESSK 623
>RGD|621143 [details] [associations]
symbol:Ssrp1 "structure specific recognition protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;NAS] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
Length = 709
Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 35/82 (42%), Positives = 48/82 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ EYEK MK Y + + +K
Sbjct: 602 DARREYEKAMKEYEGGRGDSSK 623
>UNIPROTKB|Q04931 [details] [associations]
symbol:Ssrp1 "FACT complex subunit SSRP1" species:10116
"Rattus norvegicus" [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
Length = 709
Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 35/82 (42%), Positives = 48/82 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ EYEK MK Y + + +K
Sbjct: 602 DARREYEKAMKEYEGGRGDSSK 623
>UNIPROTKB|B6ZLK1 [details] [associations]
symbol:SSRP1 "Structure-specific recognition protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887
Pfam:PF00505 Pfam:PF03531 GO:GO:0005634 GO:GO:0005737
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG IPI:IPI00582237 UniGene:Gga.2985
HOVERGEN:HBG002932 EMBL:AADN02050757 EMBL:AADN02050758
EMBL:AB465209 STRING:B6ZLK1 Ensembl:ENSGALT00000012159
Ensembl:ENSGALT00000038738 Uniprot:B6ZLK1
Length = 706
Score = 172 (65.6 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 36/83 (43%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK+MS+ K + KAE
Sbjct: 541 DPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAE 599
Query: 94 KRKVEYEKDMKNYN-RRQAEGTK 115
K +YEK MK Y+ ++E +K
Sbjct: 600 DAKRDYEKAMKEYSVGNKSESSK 622
>UNIPROTKB|Q04678 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005694 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790 EMBL:AJ719641
EMBL:L08815 EMBL:D14315 IPI:IPI00582237 PIR:S78050
RefSeq:NP_001005796.1 UniGene:Gga.2985 ProteinModelPortal:Q04678
STRING:Q04678 PRIDE:Q04678 GeneID:396509 KEGG:gga:396509 CTD:6749
HOVERGEN:HBG002932 InParanoid:Q04678 OrthoDB:EOG41VK2K
NextBio:20816548 Uniprot:Q04678
Length = 706
Score = 172 (65.6 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 36/83 (43%), Positives = 51/83 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK+MS+ K + KAE
Sbjct: 541 DPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAE 599
Query: 94 KRKVEYEKDMKNYN-RRQAEGTK 115
K +YEK MK Y+ ++E +K
Sbjct: 600 DAKRDYEKAMKEYSVGNKSESSK 622
>RGD|1560584 [details] [associations]
symbol:RGD1560584 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00559222
Ensembl:ENSRNOT00000049438 Uniprot:D3ZIU9
Length = 204
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 38/83 (45%), Positives = 49/83 (59%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN KRP SAFF+F E+R + K +HP S+ V K GE W + + DK P KA
Sbjct: 91 DPNALKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWTNTAVDDKQPCEKKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 150 KLKEKYEKDIAAY---RAKG-KP 168
Score = 122 (48.0 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSV--AAVGKAGGEKWKSMSEADKAPYVAKA 92
P KP+ S+ F++ RE++KK H N SV + K E+WK+MS +K + A
Sbjct: 6 PKKPRGKMSSHAFFVQTCREEHKKKH-LNASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>TAIR|locus:2136103 [details] [associations]
symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
Length = 446
Score = 166 (63.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 35/79 (44%), Positives = 48/79 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK+P SA+ ++ E R K + NKSV V K GE+WK++SE KAPY A+
Sbjct: 242 DPLKPKQPISAYLIYANERRAALKGE---NKSVIEVAKMAGEEWKNLSEEKKAPYDQMAK 298
Query: 94 KRKVEYEKDMKNYNRRQAE 112
K K Y ++M+ Y R + E
Sbjct: 299 KNKEIYLQEMEGYKRTKEE 317
Score = 135 (52.6 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+P S++F+F ++ R+ ++HP N +V A KW + E +K Y +K
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISL---KWMELGEEEKQVYNSK 424
Query: 92 AEKRKVEYEKDMKNYNR 108
A + Y+K+++ YN+
Sbjct: 425 AAELMEAYKKEVEEYNK 441
>ZFIN|ZDB-GENE-050417-290 [details] [associations]
symbol:hmgb3b "high-mobility group box 3b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
Length = 198
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN P+RP S FF+F E R K +P + + V K G W ++S+++K P+++ A+
Sbjct: 90 DPNAPRRPPSGFFLFCAEQRPIIKAQNP-SLGIGDVAKKLGGMWNNLSDSEKQPFLSNAD 148
Query: 94 KRKVEYEKDMKNYNRRQAEGT 114
K K +Y+KDM Y ++ + G+
Sbjct: 149 KLKDKYQKDMAFYRKKGSGGS 169
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++ K +P + + K E+WK+MS +K + A
Sbjct: 5 DPGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLA 64
Query: 93 EKRKVEYEKDMKNYN 107
++ K Y+++M +YN
Sbjct: 65 KQDKARYDQEMMHYN 79
>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
symbol:MAL8P1.72 "high mobility group protein,
putative" species:5833 "Plasmodium falciparum" [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
Uniprot:Q8IB14
Length = 99
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP PKR SA+ ++++ R + K+ P+ K VA VGK GE W +S A KAPY KA
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKA 79
Query: 93 EKRKVEYEKDMKNYNRRQAE 112
+ KV Y K+++ Y ++ E
Sbjct: 80 QLDKVRYSKEIEEYRKKNQE 99
>UNIPROTKB|Q8IB14 [details] [associations]
symbol:PfHMGB2 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0006359 "regulation of
transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
Length = 99
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP PKR SA+ ++++ R + K+ P+ K VA VGK GE W +S A KAPY KA
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKA 79
Query: 93 EKRKVEYEKDMKNYNRRQAE 112
+ KV Y K+++ Y ++ E
Sbjct: 80 QLDKVRYSKEIEEYRKKNQE 99
>TAIR|locus:2128504 [details] [associations]
symbol:3xHMG-box2 "3xHigh Mobility Group-box2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0006084 "acetyl-CoA metabolic process"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0042127 "regulation of
cell proliferation" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AL161560 EMBL:AL035394 HSSP:P07155
HOGENOM:HOG000238964 KO:K09273 ProtClustDB:CLSN2686000
EMBL:AY074353 EMBL:AY096398 EMBL:AY125491 IPI:IPI00533790
PIR:T05612 RefSeq:NP_194111.1 UniGene:At.2572 UniGene:At.71059
ProteinModelPortal:Q9SUP7 SMR:Q9SUP7 STRING:Q9SUP7 PaxDb:Q9SUP7
PRIDE:Q9SUP7 EnsemblPlants:AT4G23800.1 GeneID:828480
KEGG:ath:AT4G23800 TAIR:At4g23800 eggNOG:NOG327891
InParanoid:Q9SUP7 OMA:FCNERRA PhylomeDB:Q9SUP7
Genevestigator:Q9SUP7 Uniprot:Q9SUP7
Length = 456
Score = 164 (62.8 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 35/79 (44%), Positives = 47/79 (59%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SAF V+ E R +++ NKSV V K GE+WK++S+ KAPY A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREE---NKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 94 KRKVEYEKDMKNYNRRQAE 112
K K Y + M+ Y R + E
Sbjct: 308 KNKETYLQAMEEYKRTKEE 326
Score = 155 (59.6 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPK+PAS++F+F ++ R++ ++ P + A V KWK +SE +K Y KA
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNN-ATVTALISLKWKELSEEEKQVYNGKAA 433
Query: 94 KRKVEYEKDMKNYNRRQAEGT 114
K Y+K+++ YN++ A T
Sbjct: 434 KLMEAYKKEVEAYNKKSAATT 454
Score = 94 (38.1 bits), Expect = 0.00079, P = 0.00079
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D + KRP+S++ ++ ++ + KK++P+ G KWKS+S DK PY + +
Sbjct: 134 DCPETKRPSSSYVLWCKDQWTEVKKENPE-ADFKETSNILGAKWKSLSAEDKKPYEERYQ 192
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
K Y + + +R+ E K
Sbjct: 193 VEKEAYLQVIAK-EKREKEAMK 213
>CGD|CAF0007020 [details] [associations]
symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR SA+ F E R+ + ++P S VGK GEKWK+++ DK PY KAE
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALNSEDKLPYENKAE 73
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YEK+ Y ++ +
Sbjct: 74 ADKKRYEKEKAEYAKKNS 91
>FB|FBgn0010228 [details] [associations]
symbol:HmgZ "HMG protein Z" species:7227 "Drosophila
melanogaster" [GO:0003677 "DNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] InterPro:IPR009071 Pfam:PF00505
EMBL:AE013599 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
eggNOG:NOG320947 GeneTree:ENSGT00700000104547 EMBL:X71139
EMBL:AY113439 PIR:S41765 RefSeq:NP_726106.1 RefSeq:NP_726107.1
UniGene:Dm.20604 ProteinModelPortal:Q06943 SMR:Q06943 PaxDb:Q06943
PRIDE:Q06943 EnsemblMetazoa:FBtr0071673 EnsemblMetazoa:FBtr0071674
GeneID:37480 KEGG:dme:Dmel_CG17921 CTD:37480 FlyBase:FBgn0010228
InParanoid:Q06943 OMA:EANGGTD OrthoDB:EOG4W0VWS PhylomeDB:Q06943
ChiTaRS:HmgZ GenomeRNAi:37480 NextBio:803858 Bgee:Q06943
GermOnline:CG17921 Uniprot:Q06943
Length = 111
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 32/71 (45%), Positives = 45/71 (63%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+ + DK + KA K
Sbjct: 4 DRPKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKTEWEQKAIKM 60
Query: 96 KVEYEKDMKNY 106
K EY K +K Y
Sbjct: 61 KEEYNKAVKEY 71
>GENEDB_PFALCIPARUM|PFL0145c [details] [associations]
symbol:PFL0145c "high mobility group protein"
species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000785 "chromatin" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0000785 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AE014188 HOGENOM:HOG000197861 HSSP:P11632 OMA:FFANDNR
GenomeReviews:AE014188_GR RefSeq:XP_001350438.1
ProteinModelPortal:Q8I616 EnsemblProtists:PFL0145c:mRNA
GeneID:811082 KEGG:pfa:PFL0145c EuPathDB:PlasmoDB:PF3D7_1202900
ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP+ PKR SA+ F +E R + P+ +K VA VGK GE W + E +KAP+ KA
Sbjct: 17 DPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKA 76
Query: 93 EKRKVEYEKDMKNY 106
++ K+ YEK+ Y
Sbjct: 77 QEDKLRYEKEKAEY 90
>UNIPROTKB|Q8I616 [details] [associations]
symbol:HMGB1 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0000785 "chromatin" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0000785 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AE014188 HOGENOM:HOG000197861
HSSP:P11632 OMA:FFANDNR GenomeReviews:AE014188_GR
RefSeq:XP_001350438.1 ProteinModelPortal:Q8I616
EnsemblProtists:PFL0145c:mRNA GeneID:811082 KEGG:pfa:PFL0145c
EuPathDB:PlasmoDB:PF3D7_1202900 ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP+ PKR SA+ F +E R + P+ +K VA VGK GE W + E +KAP+ KA
Sbjct: 17 DPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKA 76
Query: 93 EKRKVEYEKDMKNY 106
++ K+ YEK+ Y
Sbjct: 77 QEDKLRYEKEKAEY 90
>UNIPROTKB|Q9UVL1 [details] [associations]
symbol:NHP6 "Non-histone chromosomal protein 6"
species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR SA+ F E R+ + ++P S VGK GEKWK+++ DK PY KAE
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALNSEDKLPYENKAE 73
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YEK+ Y ++ +
Sbjct: 74 ADKKRYEKEKAEYAKKNS 91
>UNIPROTKB|F1N1P2 [details] [associations]
symbol:F1N1P2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02056400
IPI:IPI00904552 Ensembl:ENSBTAT00000020361 Uniprot:F1N1P2
Length = 199
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP PKR S +F EF + K HP S+ V K GE W ++S+++K PY+ KA
Sbjct: 88 DPKAPKRLPSGCLLFCSEFHPKIKSTHP-GISIRDVAKKLGEMWNNLSDSEKQPYINKAA 146
Query: 94 KRKVEYEKDMKNYNRR-QAEGTK 115
K K +YEKD ++ R + +GTK
Sbjct: 147 KLK-KYEKDAADHKSRGKFDGTK 168
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK A+ F++ RE++KK + + + A K E+WK+MS +K+ + A
Sbjct: 5 DPKKPKGKMCAYAFFVQMCREEHKKKNSEVPVNFAEFSKKCSERWKTMSRKEKSKFDEMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K+ Y+++MK+Y A G K
Sbjct: 65 KAYKMHYDQEMKDYG--PARGGK 85
>ASPGD|ASPL0000037691 [details] [associations]
symbol:AN2885 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
Length = 106
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F + R++ ++++P S VGK GEKWKS+S+ ++ PY KA
Sbjct: 23 DPNAPKRGLSAYMFFANDNRDKVREENP-GISFGQVGKMLGEKWKSLSDKERKPYEDKAA 81
Query: 94 KRKVEYEKDMKNYNRRQAE 112
K YE + Y +AE
Sbjct: 82 ADKKRYEDEKAAYKAGEAE 100
>SGD|S000006256 [details] [associations]
symbol:NHP6A "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
III transcriptional preinitiation complex assembly"
evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
Length = 93
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VGK GEKWK+++ +K PY AKA+
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENP-DITFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 94 KRKVEYEKDMKNYN 107
K YE + + YN
Sbjct: 76 ADKKRYESEKELYN 89
>TAIR|locus:2098413 [details] [associations]
symbol:HMG "high mobility group" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0035101 "FACT complex" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010050 "vegetative phase
change" evidence=RCA] [GO:0010051 "xylem and phloem pattern
formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0048439 "flower morphogenesis"
evidence=RCA] [GO:0048519 "negative regulation of biological
process" evidence=RCA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:CP002686
GenomeReviews:BA000014_GR Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0010228 GO:GO:0005719 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:D13491 EMBL:AP002057
EMBL:BT002507 EMBL:AK318679 EMBL:AK221855 IPI:IPI00547320
IPI:IPI00931095 PIR:S35511 RefSeq:NP_189515.1 UniGene:At.21931
UniGene:At.48716 ProteinModelPortal:Q05153 SMR:Q05153 STRING:Q05153
PaxDb:Q05153 PRIDE:Q05153 EnsemblPlants:AT3G28730.1 GeneID:822505
KEGG:ath:AT3G28730 TAIR:At3g28730 HOGENOM:HOG000241245
InParanoid:Q05153 PhylomeDB:Q05153 ProtClustDB:CLSN2684068
Genevestigator:Q05153 GermOnline:AT3G28730 Uniprot:Q05153
Length = 646
Score = 164 (62.8 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 33/77 (42%), Positives = 44/77 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR S F F + R+ KK+HP + VGK G+KW+ MS DK PY AKA+
Sbjct: 558 DPNAPKRAMSGFMFFSQMERDNIKKEHP-GIAFGEVGKVLGDKWRQMSADDKEPYEAKAQ 616
Query: 94 KRKVEYEKDMKNYNRRQ 110
K Y+ ++ +Y Q
Sbjct: 617 VDKQRYKDEISDYKNPQ 633
>WB|WBGene00001974 [details] [associations]
symbol:hmg-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0040011 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035 GO:GO:0007276
EMBL:FO081094 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 OMA:PVEVKKG PIR:T16908 RefSeq:NP_498633.1
ProteinModelPortal:P41848 SMR:P41848 DIP:DIP-26608N
MINT:MINT-1083096 STRING:P41848 PaxDb:P41848
EnsemblMetazoa:T20B12.8 GeneID:176052 KEGG:cel:CELE_T20B12.8
UCSC:T20B12.8 CTD:176052 WormBase:T20B12.8 InParanoid:P41848
NextBio:890908 Uniprot:P41848
Length = 697
Score = 164 (62.8 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 37/85 (43%), Positives = 48/85 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ + R + K+D SVA V K GG KWK+MS DK + KAE
Sbjct: 552 DPNAPKRATSAYMQWFLASRNELKED---GDSVADVAKKGGAKWKTMSSDDKKKWEEKAE 608
Query: 94 KRKVEYEKDMKNYNRR--QAEGTKP 116
+ K YEK+MK Y + + +KP
Sbjct: 609 EDKSRYEKEMKEYRKNGPPSSSSKP 633
>UNIPROTKB|D6R9A6 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048545
"response to steroid hormone stimulus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045944 GO:GO:0048545
GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007289 GO:GO:0043388 Pfam:PF09011
HOGENOM:HOG000197861 HGNC:HGNC:5000 ChiTaRS:HMGB2 EMBL:AC097534
IPI:IPI00967671 ProteinModelPortal:D6R9A6 SMR:D6R9A6
Ensembl:ENST00000506267 ArrayExpress:D6R9A6 Bgee:D6R9A6
Uniprot:D6R9A6
Length = 134
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
DPN PKRP SAFF+F E R + K +HP S+ K GE W
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMW 133
>UNIPROTKB|F1M1H9 [details] [associations]
symbol:F1M1H9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00949462
Ensembl:ENSRNOT00000052187 Uniprot:F1M1H9
Length = 179
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ P+RP AFF+F E+ + K +HP S+ V K GE W + + DK P KA
Sbjct: 92 DPDAPRRPPLAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPCEKKAA 150
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD Y +A+G KP
Sbjct: 151 KLKEKYEKDNAAY---RAKG-KP 169
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 34 DPNKPKRPASAFFVF-MEEFREQYKKDH-PKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DP KP+ S+++ F ++ RE++KK H + + + K E+WK+MS +K +
Sbjct: 5 DPKKPRGKMSSYYAFFVQTCREEHKKKHWDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 64
Query: 92 AEKRKVEYEKDMKNYNRRQAEGTK 115
A+ K YE++MK Y + E K
Sbjct: 65 AKADKARYEREMKTYIPPKGETKK 88
>ZFIN|ZDB-GENE-030131-8480 [details] [associations]
symbol:hmgb1b "high-mobility group box 1b"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-8480 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 eggNOG:NOG320947 EMBL:AL929092 EMBL:BC146744
IPI:IPI00854267 UniGene:Dr.47534 SMR:A6H8T4
Ensembl:ENSDART00000108983 NextBio:20932104 Uniprot:A6H8T4
Length = 165
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K + A
Sbjct: 4 DPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 93 EKRKVEYEKDMKNY 106
++ KV YE++MKNY
Sbjct: 64 KQDKVRYEREMKNY 77
Score = 90 (36.7 bits), Expect = 0.00028, P = 0.00028
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 57 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
K ++P S+ + K GE W S S K PY KA K K +Y+KD+ Y + G
Sbjct: 81 KGENP-GLSIGDIAKKLGEMWNSSSAEVKQPYEKKAAKLKEKYDKDIALYRTKGIAG 136
>SGD|S000002157 [details] [associations]
symbol:NHP6B "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
transcriptional preinitiation complex assembly" evidence=IGI;IDA]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
Length = 99
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VG+ GE+WK+++ +K PY +KA+
Sbjct: 23 DPNAPKRGLSAYMFFANENRDIVRSENP-DVTFGQVGRILGERWKALTAEEKQPYESKAQ 81
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YE + + YN +A
Sbjct: 82 ADKKRYESEKELYNATRA 99
>RGD|1594733 [details] [associations]
symbol:LOC690521 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001074673 Ncbi:XP_001074673
Length = 213
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 37/83 (44%), Positives = 47/83 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAF +F E+R + K +HP S+ V K GE W + + DK P A
Sbjct: 91 DPNAPKRPPSAF-LFCSEYRPKIKGEHPA-LSIGDVTKKLGEVWTNTASDDKQPCEKMAA 148
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD Y +A+G KP
Sbjct: 149 KLKEKYEKDTAAY---RAKG-KP 167
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>UNIPROTKB|Q9W602 [details] [associations]
symbol:ssrp1 "FACT complex subunit SSRP1" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 CTD:6749 HOVERGEN:HBG002932
EMBL:AB004793 EMBL:BC082613 RefSeq:NP_001084164.1 UniGene:Xl.336
ProteinModelPortal:Q9W602 PRIDE:Q9W602 GeneID:399344
KEGG:xla:399344 Xenbase:XB-GENE-994299 Uniprot:Q9W602
Length = 693
Score = 155 (59.6 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP PKRP SA+ +++ RE+ K ++P S+ + K GE WK+MS K + +AE
Sbjct: 537 DPGAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWKNMSRDKKEEWDRRAE 595
Query: 94 KRKVEYEKDMKNYN 107
+ K +YEK MK YN
Sbjct: 596 EAKRDYEKAMKEYN 609
>SGD|S000004676 [details] [associations]
symbol:ABF2 "Mitochondrial DNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0090139
"mitochondrial DNA packaging" evidence=IMP] [GO:0000001
"mitochondrion inheritance" evidence=IMP] [GO:0000002
"mitochondrial genome maintenance" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0000262 "mitochondrial chromosome"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA]
InterPro:IPR009071 SGD:S000004676 Pfam:PF00505 GO:GO:0005634
EMBL:M73753 EMBL:AJ223169 EMBL:Z48952 EMBL:AY557967 EMBL:BK006946
PIR:A41302 RefSeq:NP_013788.1 ProteinModelPortal:Q02486 SMR:Q02486
DIP:DIP-5492N IntAct:Q02486 MINT:MINT-505363 STRING:Q02486
PaxDb:Q02486 PeptideAtlas:Q02486 EnsemblFungi:YMR072W GeneID:855094
KEGG:sce:YMR072W CYGD:YMR072w eggNOG:COG5648
GeneTree:ENSGT00680000100562 OMA:FHESSKP OrthoDB:EOG483HF0
NextBio:978405 Genevestigator:Q02486 GermOnline:YMR072W
GO:GO:0000262 GO:GO:0008301 GO:GO:0090139 GO:GO:0000001
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Uniprot:Q02486
Length = 183
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 27/73 (36%), Positives = 49/73 (67%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD-KAPYVAKAEKRK 96
PKRP SA+F+++++ R Q+ K++P + A + K GEKW+++ EAD K Y+++ +K
Sbjct: 43 PKRPTSAYFLYLQDHRSQFVKENPTLRP-AEISKIAGEKWQNL-EADIKEKYISERKKLY 100
Query: 97 VEYEKDMKNYNRR 109
EY+K K ++ +
Sbjct: 101 SEYQKAKKEFDEK 113
Score = 104 (41.7 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PK+PA F + E R Q HP +KS + K G+KW+S+ ++ K Y+
Sbjct: 116 PKKPAGPFIKYANEVRSQVFAQHP-DKSQLDLMKIIGDKWQSLDQSIKDKYIQ------- 167
Query: 98 EYEKDMKNYNRR 109
EY+K ++ YN R
Sbjct: 168 EYKKAIQEYNAR 179
>UNIPROTKB|F1M607 [details] [associations]
symbol:F1M607 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00558117 Ensembl:ENSRNOT00000046997 Uniprot:F1M607
Length = 211
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 35/83 (42%), Positives = 48/83 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR SAFF+ E+R + K +HP S+ V + GE W + + DK P KA
Sbjct: 87 DPSAPKRLPSAFFLLCSEYRPKIKGEHP-GLSIGDVARKLGEMWNNTAADDKQP-CEKAA 144
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 145 KLKEKYEKDIAAY---RAKG-KP 163
Score = 97 (39.2 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F E +++K HP + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYTFFGGE---EHEKKHPDAFVNFLEFSKKCSERWKTMSAKEKGEFENMA 61
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
K K +E++MK Y + E TK
Sbjct: 62 -KAKARHEREMKTYISPKGE-TK 82
>MGI|MGI:1916567 [details] [associations]
symbol:Hmgb4 "high-mobility group box 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1916567 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 CTD:127540 KO:K11297 OMA:RYQEEMM
OrthoDB:EOG4255TS HSSP:P17741 EMBL:AK005588 EMBL:BC061030
IPI:IPI00118961 RefSeq:NP_081312.2 UniGene:Mm.331893
ProteinModelPortal:Q6P8W9 SMR:Q6P8W9 PhosphoSite:Q6P8W9
PRIDE:Q6P8W9 Ensembl:ENSMUST00000053830 GeneID:69317 KEGG:mmu:69317
eggNOG:NOG288392 InParanoid:Q6P8W9 NextBio:329122 Bgee:Q6P8W9
CleanEx:MM_HMGB4 Genevestigator:Q6P8W9 Uniprot:Q6P8W9
Length = 181
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP P++P S+F +F + K+++P + +V V KA G+ W + EA+K PY KA
Sbjct: 89 DPKAPRKPPSSFLLFSRDHYAMLKQENP-DWTVVQVAKAAGKMWSTTDEAEKKPYEQKAA 147
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ +Y ++ + Y R Q +G K
Sbjct: 148 LMRAKYFEEQEAY-RNQCQGRK 168
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
D +PK S++ FM FR ++K+ P + EKW+S+S+ +KA Y A A
Sbjct: 5 DQLRPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALA 64
Query: 93 EKRKVEYEKDMKNY--NRRQAEGTKP 116
E K Y+++M NY RR+ P
Sbjct: 65 ELDKARYQQEMMNYIGKRRKRRKRDP 90
>UNIPROTKB|Q32L34 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9913
"Bos taurus" [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 EMBL:BC109790 IPI:IPI00760422
RefSeq:NP_001035652.1 UniGene:Bt.54197 ProteinModelPortal:Q32L34
Ensembl:ENSBTAT00000000438 GeneID:539195 KEGG:bta:539195 CTD:127540
InParanoid:Q32L34 KO:K11297 OMA:RYQEEMM OrthoDB:EOG4255TS
NextBio:20877839 Uniprot:Q32L34
Length = 194
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ P+RP S+F +F ++ Q K ++P + SV V KA G+ W + ++ DK PY +A
Sbjct: 89 DPHAPRRPPSSFLLFCQDHYAQLKSENP-SWSVVQVAKASGKMWSAKTDVDKQPYEQRAA 147
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ +Y +++ Y R Q K
Sbjct: 148 LLRAKYREELSVY-RNQFNARK 168
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
D KPK S++ F+ +R ++K+ P + EKW+S+S+ +KA Y A A
Sbjct: 5 DQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K Y+++M NY R+ + K
Sbjct: 65 KLDKARYQEEMMNYFGRRKKRRK 87
>FB|FBgn0004362 [details] [associations]
symbol:HmgD "High mobility group protein D" species:7227
"Drosophila melanogaster" [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=IDA]
[GO:0003680 "AT DNA binding" evidence=IDA] [GO:0008301 "DNA
binding, bending" evidence=IDA;NAS] [GO:0007517 "muscle organ
development" evidence=IMP] [GO:0048813 "dendrite morphogenesis"
evidence=IMP] InterPro:IPR009071 Pfam:PF00505 EMBL:AE013599
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048813
GO:GO:0007517 GO:GO:0006325 GO:GO:0003680 eggNOG:NOG320947
EMBL:M77023 EMBL:X71138 EMBL:AM294353 EMBL:AM294354 EMBL:AM294355
EMBL:AM294356 EMBL:AM294357 EMBL:AM294358 EMBL:AM294359
EMBL:AM294360 EMBL:AM294361 EMBL:AM294362 EMBL:AM294363
EMBL:AY118333 PIR:A44382 RefSeq:NP_001163244.1 RefSeq:NP_726109.1
RefSeq:NP_726110.1 UniGene:Dm.7318 PDB:1E7J PDB:1HMA PDB:1QRV
PDB:3NM9 PDBsum:1E7J PDBsum:1HMA PDBsum:1QRV PDBsum:3NM9
ProteinModelPortal:Q05783 SMR:Q05783 DIP:DIP-22805N IntAct:Q05783
MINT:MINT-843935 STRING:Q05783 PaxDb:Q05783 PRIDE:Q05783
EnsemblMetazoa:FBtr0071708 EnsemblMetazoa:FBtr0071709
EnsemblMetazoa:FBtr0301410 GeneID:37481 KEGG:dme:Dmel_CG17950
CTD:37481 FlyBase:FBgn0004362 GeneTree:ENSGT00700000104547
InParanoid:Q05783 OMA:WRAMSEQ OrthoDB:EOG4TX98R PhylomeDB:Q05783
ChiTaRS:HmgD EvolutionaryTrace:Q05783 GenomeRNAi:37481
NextBio:803865 Bgee:Q05783 GermOnline:CG17950 Uniprot:Q05783
Length = 112
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+KPKRP SA+ +++ RE K+++P K V V K GGE W++M DK+ + AKA K
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMK--DKSEWEAKAAKA 59
Query: 96 KVEYEKDMKNY 106
K +Y++ +K +
Sbjct: 60 KDDYDRAVKEF 70
>UNIPROTKB|Q5T7C6 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681
IPI:IPI00645948 SMR:Q5T7C6 MINT:MINT-1373108
Ensembl:ENST00000426225 Uniprot:Q5T7C6
Length = 162
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPY 144
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>UNIPROTKB|Q8WW32 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 EMBL:CH471059 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
EMBL:AL121980 HOGENOM:HOG000197861 HOVERGEN:HBG009000 CTD:127540
KO:K11297 OMA:RYQEEMM EMBL:DQ207367 EMBL:AK311985 EMBL:BC021180
IPI:IPI00815726 RefSeq:NP_660206.2 UniGene:Hs.568628
UniGene:Hs.667683 HSSP:P17741 ProteinModelPortal:Q8WW32 SMR:Q8WW32
PhosphoSite:Q8WW32 DMDM:74730920 PRIDE:Q8WW32 DNASU:127540
Ensembl:ENST00000519684 Ensembl:ENST00000522796 GeneID:127540
KEGG:hsa:127540 GeneCards:GC01P034326 HGNC:HGNC:24954 HPA:HPA035699
neXtProt:NX_Q8WW32 InParanoid:Q8WW32 PhylomeDB:Q8WW32 NextBio:82109
Bgee:Q8WW32 CleanEx:HS_HMGB4 Genevestigator:Q8WW32 Uniprot:Q8WW32
Length = 186
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP +P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++ +K PY +
Sbjct: 89 DPQEPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDLEKHPYEQRVA 147
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ +Y ++++ Y R+Q K
Sbjct: 148 LLRAKYFEELELY-RKQCNARK 168
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
KPK S++ F+ +R ++K+ P + EKW+S+S+ +KA Y A A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 96 KVEYEKDMKNY 106
K Y+++M NY
Sbjct: 68 KARYQEEMMNY 78
>UNIPROTKB|G4MS97 [details] [associations]
symbol:MGG_04489 "Non-histone chromosomal protein 6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
KEGG:mgr:MGG_04489 Uniprot:G4MS97
Length = 101
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP PKR SA+ F E R+ ++++P + VGK GE+WK++S+ +APY AKA
Sbjct: 20 DPMAPKRGLSAYMFFANEQRDNVREENP-GVTFGQVGKILGERWKALSDKQRAPYDAKAA 78
Query: 94 KRKVEYEKDMKNY 106
K YE + Y
Sbjct: 79 ADKKRYEDEKAAY 91
>UNIPROTKB|F1LVZ2 [details] [associations]
symbol:F1LVZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00561233 Ensembl:ENSRNOT00000040837 Uniprot:F1LVZ2
Length = 199
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 37/83 (44%), Positives = 47/83 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKRP S F F E+ Q K +HP S+ V K GE W S ++ DK PY A
Sbjct: 80 DPSAPKRPLS-LFSFCSEY-PQIKGEHP-GLSIGDVAKKLGEMWNS-TDTDKQPYGKMAA 135
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +YEKD+ Y +A+G KP
Sbjct: 136 KLKEKYEKDIAAY---RAKG-KP 154
>POMBASE|SPBC28F2.11 [details] [associations]
symbol:SPBC28F2.11 "HMG box protein" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0043066 "negative regulation of
apoptotic process" evidence=IGI] InterPro:IPR009071
PomBase:SPBC28F2.11 GO:GO:0005794 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 EMBL:CU329671 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P63159
OrthoDB:EOG4RV61X PIR:T40054 RefSeq:NP_595672.1
ProteinModelPortal:Q9USU7 STRING:Q9USU7 EnsemblFungi:SPBC28F2.11.1
GeneID:2540337 KEGG:spo:SPBC28F2.11 eggNOG:NOG246329
NextBio:20801465 Uniprot:Q9USU7
Length = 310
Score = 143 (55.4 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKD-HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP +PKRP SA+ +F + R + K+ K+ V V KA EKW S+SE D+ Y +A
Sbjct: 113 DPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEA 172
Query: 93 EKRKVEYEKDMKNYN 107
K + YE++M YN
Sbjct: 173 SKLREAYEEEMAAYN 187
>UNIPROTKB|Q5T7C0 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001654
"eye development" evidence=IEA] [GO:0005125 "cytokine activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010858 "calcium-dependent protein kinase
regulator activity" evidence=IEA] [GO:0030295 "protein kinase
activator activity" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
GO:GO:0005634 GO:GO:0005737 GO:GO:0005615 GO:GO:0003677
GO:GO:0030324 GO:GO:0045944 GO:GO:0051384 GO:GO:0043005
GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045819
GO:GO:0001654 Pfam:PF09011 GO:GO:0045639 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 GO:GO:0010858
GO:GO:2000426 EMBL:AL138681 IPI:IPI00643746 SMR:Q5T7C0
Ensembl:ENST00000398908 Uniprot:Q5T7C0
Length = 97
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPPKGETKK 87
>RGD|2319567 [details] [associations]
symbol:LOC100361707 "Ac2-008-like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 RGD:2319567 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:AC128270
IPI:IPI00382302 Ensembl:ENSRNOT00000047163 ArrayExpress:F1LNG6
Uniprot:F1LNG6
Length = 219
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 133 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 192
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 193 KADKARYEREMKTYIPPKGETKK 215
>UNIPROTKB|P23497 [details] [associations]
symbol:SP100 "Nuclear autoantigen Sp-100" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IPI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0016605 "PML
body" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS]
[GO:0060333 "interferon-gamma-mediated signaling pathway"
evidence=IC;TAS] [GO:0005730 "nucleolus" evidence=IMP;IDA]
[GO:0032526 "response to retinoic acid" evidence=IDA] [GO:0034097
"response to cytokine stimulus" evidence=IDA] [GO:0034399 "nuclear
periphery" evidence=IDA] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=IC] [GO:0003713 "transcription
coactivator activity" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0006978 "DNA damage response, signal
transduction by p53 class mediator resulting in transcription of
p21 class mediator" evidence=IDA] [GO:0034340 "response to type I
interferon" evidence=IDA;IMP] [GO:0034341 "response to
interferon-gamma" evidence=IDA;IMP] [GO:0060337 "type I
interferon-mediated signaling pathway" evidence=IC] [GO:0070087
"chromo shadow domain binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0019900 "kinase
binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA;IMP] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0043392
"negative regulation of DNA binding" evidence=IDA] [GO:0043433
"negative regulation of sequence-specific DNA binding transcription
factor activity" evidence=IDA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0051271 "negative regulation of cellular component movement"
evidence=IMP] [GO:0032897 "negative regulation of viral
transcription" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IPI]
[GO:0008134 "transcription factor binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000770 InterPro:IPR004865
Pfam:PF01342 Pfam:PF03172 PROSITE:PS50864 PROSITE:PS51414
SMART:SM00258 Pfam:PF00505 GO:GO:0005737 Reactome:REACT_6900
GO:GO:0003714 GO:GO:0045892 GO:GO:0019048 GO:GO:0045893
GO:GO:0060333 GO:GO:0060337 GO:GO:0051091 GO:GO:0005730
GO:GO:0003677 GO:GO:0016605 GO:GO:0034097 GO:GO:0000122
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0003713 GO:GO:0032526 GO:GO:0051271 GO:GO:0043433
Gene3D:3.10.390.10 InterPro:IPR010919 SUPFAM:SSF63763 GO:GO:0048384
GO:GO:0034399 GO:GO:0006978 Pfam:PF09011 GO:GO:0043392
OrthoDB:EOG44QT09 GO:GO:0034340 GO:GO:0032897 EMBL:AC009949
EMBL:U36501 EMBL:AF056322 EMBL:M60618 EMBL:AF255565 EMBL:AK293373
EMBL:AC010149 EMBL:BC011562 EMBL:X95472 EMBL:L79986 EMBL:L79987
EMBL:L79988 EMBL:AF076675 EMBL:AF378670 IPI:IPI00011675
IPI:IPI00218324 IPI:IPI00218325 IPI:IPI00218326 IPI:IPI00218327
IPI:IPI00917048 IPI:IPI00917345 PIR:A37244 RefSeq:NP_001073860.1
RefSeq:NP_001193630.1 RefSeq:NP_001193631.1 RefSeq:NP_001193632.1
RefSeq:NP_001193633.1 RefSeq:NP_003104.2 UniGene:Hs.369056 PDB:1H5P
PDBsum:1H5P ProteinModelPortal:P23497 SMR:P23497 DIP:DIP-5983N
IntAct:P23497 MINT:MINT-1188807 STRING:P23497 PhosphoSite:P23497
DMDM:13878931 PaxDb:P23497 PRIDE:P23497 Ensembl:ENST00000264052
Ensembl:ENST00000340126 Ensembl:ENST00000409341
Ensembl:ENST00000409897 Ensembl:ENST00000427101 GeneID:6672
KEGG:hsa:6672 UCSC:uc002vqq.2 UCSC:uc002vqt.3 UCSC:uc002vqu.1
UCSC:uc010zmb.2 CTD:6672 GeneCards:GC02P231280 HGNC:HGNC:11206
HPA:HPA016707 HPA:HPA017384 MIM:604585 neXtProt:NX_P23497
PharmGKB:PA36043 eggNOG:NOG249894 HOVERGEN:HBG057632 KO:K15413
OMA:TESCEQV ChiTaRS:SP100 EvolutionaryTrace:P23497 GenomeRNAi:6672
NextBio:26015 ArrayExpress:P23497 Bgee:P23497 CleanEx:HS_SP100
Genevestigator:P23497 GermOnline:ENSG00000067066 Uniprot:P23497
Length = 879
Score = 149 (57.5 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 36/83 (43%), Positives = 47/83 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP AFF+F E+R + K +HP V K G W + + ADK Y KA
Sbjct: 765 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG-MWNNTAAADKQFYEKKAA 823
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K +Y+KD+ Y +A+G KP
Sbjct: 824 KLKEKYKKDIAAY---RAKG-KP 842
>UNIPROTKB|D4A2L7 [details] [associations]
symbol:D4A2L7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00948102
Ensembl:ENSRNOT00000030194 ArrayExpress:D4A2L7 Uniprot:D4A2L7
Length = 135
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 57 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 82 KGEHP-GLSIGDVVKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 133
>RGD|1583212 [details] [associations]
symbol:LOC685091 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001062256 Ncbi:XP_001062256
Length = 203
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 37/83 (44%), Positives = 44/83 (53%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN KRP SAF +F + R + K HP S+ V K GE W S DK P KA
Sbjct: 98 DPNALKRPPSAF-LFCSDHRPKIKGKHP-GLSIGDVAKNLGEMWNSTVMDDKQPSEKKAT 155
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K YEKD+ Y +A+G KP
Sbjct: 156 KLKETYEKDIAAY---RAKG-KP 174
Score = 115 (45.5 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP PK S++ F++ + E++KK HP + + + K E+WK+M + Y A
Sbjct: 13 DPQNPKGKVSSYTFFVQTW-EEHKKQHPDASVNFSEFSKKCSERWKTMCAKENGKYEDMA 71
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K +E++MK Y + E K
Sbjct: 72 KADKAHHEREMKTYILPKGETKK 94
>RGD|2319002 [details] [associations]
symbol:LOC100365478 "high-mobility group box 1-like"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:2319002 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
IPI:IPI00958625 Ensembl:ENSRNOT00000062071 Uniprot:F1LWU2
Length = 186
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 37/83 (44%), Positives = 44/83 (53%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN KRP SAF +F + R + K HP S+ V K GE W S DK P KA
Sbjct: 90 DPNALKRPPSAF-LFCSDHRPKIKGKHP-GLSIGDVAKNLGEMWNSTVMDDKQPSEKKAT 147
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
K K YEKD+ Y +A+G KP
Sbjct: 148 KLKETYEKDIAAY---RAKG-KP 166
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP PK S++ F++ + E++KK HP + + + K E+WK+M + Y A
Sbjct: 5 DPQNPKGKVSSYTFFVQTW-EEHKKQHPDASVNFSEFSKKCSERWKTMCAKENGKYEDMA 63
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K +E++MK Y + E K
Sbjct: 64 KADKAHHEREMKTYILPKGETKK 86
>WB|WBGene00001973 [details] [associations]
symbol:hmg-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040011 GO:GO:0040018 GO:GO:0048477
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000910 GO:GO:0007413
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
EMBL:FO080198 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 PIR:T34025 RefSeq:NP_491688.1
ProteinModelPortal:O01683 SMR:O01683 IntAct:O01683 STRING:O01683
PaxDb:O01683 PRIDE:O01683 EnsemblMetazoa:C32F10.5 GeneID:172250
KEGG:cel:CELE_C32F10.5 UCSC:C32F10.5 CTD:172250 WormBase:C32F10.5
InParanoid:O01683 OMA:KRATTAY NextBio:874675 Uniprot:O01683
Length = 689
Score = 140 (54.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+PKR +A+ ++ R K+D ++ V K G KWKSMS DK + KA
Sbjct: 557 DPNEPKRATTAYIIWFNANRNSMKED---GDTLGDVAKKAGAKWKSMSADDKKEWNDKAA 613
Query: 94 KRKVEYEKDMKNYNR 108
+ K YE +MK Y +
Sbjct: 614 QDKARYEAEMKEYKK 628
>ZFIN|ZDB-GENE-031118-9 [details] [associations]
symbol:ssrp1a "structure specific recognition protein
1a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 ZFIN:ZDB-GENE-031118-9 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX510356
IPI:IPI00487997 Ensembl:ENSDART00000137795 ArrayExpress:F1QEB4
Bgee:F1QEB4 Uniprot:F1QEB4
Length = 705
Score = 138 (53.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D PKRP SA+ +++ RE+ K ++P S+ + K GE WK + + K + KAE
Sbjct: 542 DAAAPKRPMSAYMLWLNGNRERIKSENP-GISITEISKKAGEMWKQLGKDKKEEWDKKAE 600
Query: 94 KRKVEYEKDMKNY 106
+ K +YEK MK Y
Sbjct: 601 EAKRQYEKAMKEY 613
>FB|FBgn0038978 [details] [associations]
symbol:CG7045 species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0000785 "chromatin" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 EMBL:AE014297 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 HSSP:Q05783 OrthoDB:EOG4MCVGR
RefSeq:NP_651055.1 UniGene:Dm.1280 ProteinModelPortal:Q9VCZ5
SMR:Q9VCZ5 MINT:MINT-1649734 STRING:Q9VCZ5 PRIDE:Q9VCZ5
EnsemblMetazoa:FBtr0084258 GeneID:42650 KEGG:dme:Dmel_CG7045
UCSC:CG7045-RA FlyBase:FBgn0038978 InParanoid:Q9VCZ5
PhylomeDB:Q9VCZ5 GenomeRNAi:42650 NextBio:829878
ArrayExpress:Q9VCZ5 Bgee:Q9VCZ5 Uniprot:Q9VCZ5
Length = 126
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 37 KPKRPASAFFVFMEEF-REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+PK+P SAF ++M R+ K +HP + SV V GGE W++M++ DK + A
Sbjct: 7 RPKKPMSAFMLWMNSTGRKHIKAEHP-DFSVQEVSVKGGEMWRAMADEDKIVWQESATTA 65
Query: 96 KVEYEKDMKNYN 107
EY++ +K +N
Sbjct: 66 MAEYKEKLKQWN 77
>UNIPROTKB|C9JQA7 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968 IPI:IPI00878211
ProteinModelPortal:C9JQA7 SMR:C9JQA7 STRING:C9JQA7
Ensembl:ENST00000453933 ArrayExpress:C9JQA7 Bgee:C9JQA7
Uniprot:C9JQA7
Length = 142
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PK P + + F+ E REQ + HP + + K G +W + +K Y+ +AE+
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPTEKQRYLDEAER 125
Query: 95 RKVEYEKDMKNYNRRQA 111
K +Y K+++ Y + +A
Sbjct: 126 EKQQYMKELRAYQQSEA 142
>ZFIN|ZDB-GENE-041008-209 [details] [associations]
symbol:ssrp1b "structure specific recognition
protein 1b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
ZFIN:ZDB-GENE-041008-209 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX511158
IPI:IPI00502576 PRIDE:F6NLJ7 Ensembl:ENSDART00000131296 Bgee:F6NLJ7
Uniprot:F6NLJ7
Length = 703
Score = 137 (53.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D PKRP SA+ +++ R++ K ++P S+ + K GE WK + + K + KAE
Sbjct: 539 DSGAPKRPMSAYMLWLNSSRDRIKSENP-GISITEISKKAGEMWKQLGKDKKEEWDGKAE 597
Query: 94 KRKVEYEKDMKNYNRRQAEG 113
+ K EY++ M+ Y R++ G
Sbjct: 598 EAKKEYDRAMREY--RESGG 615
>FB|FBgn0010278 [details] [associations]
symbol:Ssrp "Structure specific recognition protein"
species:7227 "Drosophila melanogaster" [GO:0000217 "DNA secondary
structure binding" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS;NAS] [GO:0005634 "nucleus" evidence=ISS;NAS]
[GO:0003727 "single-stranded RNA binding" evidence=NAS] [GO:0005730
"nucleolus" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001672 "regulation of chromatin assembly or
disassembly" evidence=IMP] [GO:0035101 "FACT complex"
evidence=IDA;TAS] [GO:0043621 "protein self-association"
evidence=IDA] [GO:0031492 "nucleosomal DNA binding" evidence=IDA]
[GO:0051101 "regulation of DNA binding" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:AE013599
GO:GO:0005694 GO:GO:0022008 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
GO:GO:0003723 GO:GO:0043621 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051101 GO:GO:0031492
GeneTree:ENSGT00700000104547 GO:GO:0001672 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:L08825 EMBL:X68408
EMBL:BT004831 PIR:A48217 PIR:S33688 RefSeq:NP_523830.2
UniGene:Dm.3383 PDB:1WXL PDBsum:1WXL ProteinModelPortal:Q05344
SMR:Q05344 IntAct:Q05344 STRING:Q05344 PaxDb:Q05344
EnsemblMetazoa:FBtr0072242 GeneID:37767 KEGG:dme:Dmel_CG4817
CTD:37767 FlyBase:FBgn0010278 InParanoid:Q05344 OrthoDB:EOG40CFZ2
PhylomeDB:Q05344 EvolutionaryTrace:Q05344 GenomeRNAi:37767
NextBio:805310 Bgee:Q05344 GermOnline:CG4817 Uniprot:Q05344
Length = 723
Score = 137 (53.3 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D KPKR +AF +++ + RE K+++P K V + K GGE WK + DK+ + A
Sbjct: 551 DSGKPKRATTAFMLWLNDTRESIKRENPGIK-VTEIAKKGGEMWKELK--DKSKWEDAAA 607
Query: 94 KRKVEYEKDMKNYNRRQAEG 113
K K Y +M+NY + +A G
Sbjct: 608 KDKQRYHDEMRNY-KPEAGG 626
>UNIPROTKB|C9J8X5 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
OrthoDB:EOG4G7C05 HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968
IPI:IPI00877739 ProteinModelPortal:C9J8X5 SMR:C9J8X5 STRING:C9J8X5
Ensembl:ENST00000416526 ArrayExpress:C9J8X5 Bgee:C9J8X5
Uniprot:C9J8X5
Length = 215
Score = 126 (49.4 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PK P + + F+ E REQ + HP + + K G +W + +K Y+ +AE+
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPTEKQRYLDEAER 125
Query: 95 RKVEYEKDMKNYNRRQA 111
K +Y K+++ Y + +A
Sbjct: 126 EKQQYMKELRAYQQSEA 142
>UNIPROTKB|E2R4Z8 [details] [associations]
symbol:HMG20B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA] [GO:0033234 "negative regulation of
protein sumoylation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104521 OMA:RLRKMNT EMBL:AAEX03012575
EMBL:AAEX03012576 Ensembl:ENSCAFT00000030501 Uniprot:E2R4Z8
Length = 316
Score = 130 (50.8 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PK P + + F+ E REQ + HP + + K G +W + A+K Y+ +AE+
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPAEKQRYLDEAER 125
Query: 95 RKVEYEKDMKNYNRRQA 111
K +Y K+++ Y + +A
Sbjct: 126 EKQQYMKELRAYQQSEA 142
>UNIPROTKB|Q32L68 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9913 "Bos taurus" [GO:0005694 "chromosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049
HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:BC109740
IPI:IPI00703994 RefSeq:NP_001033143.1 UniGene:Bt.62699 HSSP:P48431
ProteinModelPortal:Q32L68 SMR:Q32L68 STRING:Q32L68 PRIDE:Q32L68
GeneID:507723 KEGG:bta:507723 CTD:10362 InParanoid:Q32L68
OrthoDB:EOG4G7C05 NextBio:20868195 Uniprot:Q32L68
Length = 317
Score = 130 (50.8 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PK P + + F+ E REQ + HP + + K G +W + A+K Y+ +AE+
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPAEKQRYLDEAER 125
Query: 95 RKVEYEKDMKNYNRRQA 111
K +Y K+++ Y + +A
Sbjct: 126 EKQQYMKELRAYQQSEA 142
>UNIPROTKB|Q5D144 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9823 "Sus scrofa" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=ISS] [GO:0070363 "mitochondrial light strand promoter
sense binding" evidence=ISS] [GO:0033108 "mitochondrial respiratory
chain complex assembly" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
HSSP:P63159 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OrthoDB:EOG4KKZ4D EMBL:AY923074 RefSeq:NP_001123683.1
UniGene:Ssc.48086 UniGene:Ssc.78474 ProteinModelPortal:Q5D144
STRING:Q5D144 GeneID:397279 KEGG:ssc:397279 Uniprot:Q5D144
Length = 246
Score = 126 (49.4 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SA+ +F+ E R Q KD P + + E WK++S + K Y+ AE K
Sbjct: 154 KPKRPRSAYNIFIAE-RFQEAKDGPSQVKLKTIN----ENWKNLSSSQKQVYIQLAEDDK 208
Query: 97 VEYEKDMKNYNRRQAE 112
V Y +MK++ + E
Sbjct: 209 VRYYNEMKSWEEQMVE 224
>WB|WBGene00001972 [details] [associations]
symbol:hmg-1.2 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0001708 "cell fate
specification" evidence=IMP] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IGI] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003677 "DNA binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0001708 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040010 GO:GO:0008406 GO:GO:0016055 GO:GO:0003677
GO:GO:0010171 GO:GO:0040018 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:FO080618
GO:GO:0040035 GO:GO:0040025 Pfam:PF09011 EMBL:AF056577 PIR:T43009
RefSeq:NP_001022599.1 RefSeq:NP_001022600.1 RefSeq:NP_498375.1
UniGene:Cel.10345 ProteinModelPortal:Q09390 SMR:Q09390
IntAct:Q09390 STRING:Q09390 PaxDb:Q09390 PRIDE:Q09390
EnsemblMetazoa:F47D12.4a.1 EnsemblMetazoa:F47D12.4a.2 GeneID:175890
KEGG:cel:CELE_F47D12.4 UCSC:F47D12.4a.1 CTD:175890
WormBase:F47D12.4a WormBase:F47D12.4b WormBase:F47D12.4c
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 InParanoid:Q09390
KO:K11295 OMA:GEDAMRK NextBio:890170 Uniprot:Q09390
Length = 235
Score = 125 (49.1 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR SAFF + ++ R + + HP K V V + G+ WK + + K Y KA+
Sbjct: 131 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWK-VGQVAQELGKMWKLVPQETKDMYEQKAQ 189
Query: 94 KRKVEYEKDMKNY 106
K Y +M+NY
Sbjct: 190 ADKDRYADEMRNY 202
>DICTYBASE|DDB_G0270260 [details] [associations]
symbol:nhp6 "HMG1/2 (high mobility group)
box-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006325 "chromatin organization"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000790 "nuclear chromatin" evidence=ISS] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR009071 dictyBase:DDB_G0270260 Pfam:PF00505
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006357 GO:GO:0006351 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000790 GO:GO:0006325 HSSP:P63159
RefSeq:XP_646657.1 ProteinModelPortal:Q55C24 STRING:Q55C24
EnsemblProtists:DDB0216420 GeneID:8617629 KEGG:ddi:DDB_G0270260
OMA:ERVKNAN Uniprot:Q55C24
Length = 141
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D N P+R S F F ++ R K HP N S +G G++W +S DK Y A
Sbjct: 49 DENAPRRYLSPFIFFSKDHRSVIKNSHP-NCSFGEIGSLLGQEWAKISAEDKKKYEKLAA 107
Query: 94 KRKVEYEKDMKNYNRR 109
+ K +E + KNY+ +
Sbjct: 108 EDKKRWELEKKNYDEK 123
>MGI|MGI:1341190 [details] [associations]
symbol:Hmg20b "high mobility group 20B" species:10090 "Mus
musculus" [GO:0000400 "four-way junction DNA binding" evidence=ISA]
[GO:0000794 "condensed nuclear chromosome" evidence=ISA]
[GO:0002111 "BRCA2-BRAF35 complex" evidence=ISA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=NAS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006325 "chromatin
organization" evidence=NAS] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IDA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IMP]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IGI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1341190
Pfam:PF00505 GO:GO:0005694 GO:GO:0003700 GO:GO:0006351
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007049 GO:GO:0045666 GO:GO:0035914
GO:GO:0033234 HOGENOM:HOG000247029 HOVERGEN:HBG059870
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT ChiTaRS:HMG20B EMBL:AF067430 EMBL:AF146224
EMBL:AL355734 EMBL:AL355735 EMBL:BC011334 IPI:IPI00323315
RefSeq:NP_001156637.1 RefSeq:NP_001156638.1 RefSeq:NP_034570.1
UniGene:Mm.38474 PDB:2CRJ PDBsum:2CRJ ProteinModelPortal:Q9Z104
SMR:Q9Z104 IntAct:Q9Z104 STRING:Q9Z104 PhosphoSite:Q9Z104
PRIDE:Q9Z104 Ensembl:ENSMUST00000020454 Ensembl:ENSMUST00000105323
Ensembl:ENSMUST00000105324 Ensembl:ENSMUST00000167481 GeneID:15353
KEGG:mmu:15353 eggNOG:NOG241877 InParanoid:Q9Z104
EvolutionaryTrace:Q9Z104 NextBio:287960 Bgee:Q9Z104
CleanEx:MM_HMG20B Genevestigator:Q9Z104
GermOnline:ENSMUSG00000020232 GO:GO:0002111 GO:GO:0000400
Uniprot:Q9Z104
Length = 317
Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PK P + + F+ E REQ + HP + + K G +W + A+K Y+ +AEK
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPAEKQRYLDEAEK 125
Query: 95 RKVEYEKDMKNYNRRQA 111
K +Y K++ Y + +A
Sbjct: 126 EKQQYLKELWAYQQSEA 142
>RGD|620474 [details] [associations]
symbol:Sox9 "SRY-box containing gene 9" species:10116 "Rattus
norvegicus" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IDA] [GO:0001046 "core
promoter sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO;IDA] [GO:0001158
"enhancer sequence-specific DNA binding" evidence=IDA] [GO:0001501
"skeletal system development" evidence=ISO] [GO:0001502 "cartilage
condensation" evidence=IMP] [GO:0001708 "cell fate specification"
evidence=IMP] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IMP] [GO:0001894 "tissue homeostasis" evidence=IMP]
[GO:0001934 "positive regulation of protein phosphorylation"
evidence=IMP;IDA] [GO:0001942 "hair follicle development"
evidence=IMP] [GO:0002053 "positive regulation of mesenchymal cell
proliferation" evidence=IMP] [GO:0002063 "chondrocyte development"
evidence=IMP] [GO:0002683 "negative regulation of immune system
process" evidence=IMP] [GO:0003170 "heart valve development"
evidence=IMP] [GO:0003179 "heart valve morphogenesis" evidence=IMP]
[GO:0003188 "heart valve formation" evidence=IMP] [GO:0003203
"endocardial cushion morphogenesis" evidence=IMP] [GO:0003413
"chondrocyte differentiation involved in endochondral bone
morphogenesis" evidence=ISO] [GO:0003415 "chondrocyte hypertrophy"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISO;IMP;IDA]
[GO:0003705 "RNA polymerase II distal enhancer sequence-specific
DNA binding transcription factor activity" evidence=ISO;IDA]
[GO:0004672 "protein kinase activity" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
evidence=IPI] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0006461 "protein complex assembly"
evidence=ISO] [GO:0007165 "signal transduction" evidence=IMP]
[GO:0007173 "epidermal growth factor receptor signaling pathway"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IGI]
[GO:0007507 "heart development" evidence=IMP] [GO:0008013
"beta-catenin binding" evidence=IPI] [GO:0008284 "positive
regulation of cell proliferation" evidence=ISO;IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0008584 "male gonad development" evidence=ISO;IGI;IMP]
[GO:0010564 "regulation of cell cycle process" evidence=ISO]
[GO:0010628 "positive regulation of gene expression" evidence=IGI]
[GO:0010634 "positive regulation of epithelial cell migration"
evidence=ISO;ISS] [GO:0014032 "neural crest cell development"
evidence=IMP] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IMP] [GO:0019100
"male germ-line sex determination" evidence=IMP] [GO:0019933
"cAMP-mediated signaling" evidence=ISO] [GO:0030154 "cell
differentiation" evidence=IMP] [GO:0030155 "regulation of cell
adhesion" evidence=IMP] [GO:0030198 "extracellular matrix
organization" evidence=IMP] [GO:0030238 "male sex determination"
evidence=IGI] [GO:0030279 "negative regulation of ossification"
evidence=IMP] [GO:0030502 "negative regulation of bone
mineralization" evidence=IMP] [GO:0030858 "positive regulation of
epithelial cell differentiation" evidence=IMP] [GO:0030916 "otic
vesicle formation" evidence=IMP] [GO:0031018 "endocrine pancreas
development" evidence=IMP] [GO:0032331 "negative regulation of
chondrocyte differentiation" evidence=IMP] [GO:0032332 "positive
regulation of chondrocyte differentiation" evidence=ISO;IMP;IDA]
[GO:0034236 "protein kinase A catalytic subunit binding"
evidence=ISO] [GO:0035019 "somatic stem cell maintenance"
evidence=IMP] [GO:0035326 "enhancer binding" evidence=ISO;IDA]
[GO:0035622 "intrahepatic bile duct development" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043491 "protein kinase B signaling cascade" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IDA] [GO:0045165 "cell fate commitment" evidence=IGI]
[GO:0045595 "regulation of cell differentiation" evidence=IMP]
[GO:0045662 "negative regulation of myoblast differentiation"
evidence=IDA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO;IMP;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISO;IMP;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter"
evidence=ISO;IGI;IMP;IDA] [GO:0046533 "negative regulation of
photoreceptor cell differentiation" evidence=IGI] [GO:0048709
"oligodendrocyte differentiation" evidence=IMP] [GO:0050679
"positive regulation of epithelial cell proliferation"
evidence=IMP] [GO:0050680 "negative regulation of epithelial cell
proliferation" evidence=IMP] [GO:0051216 "cartilage development"
evidence=IEP;IMP;TAS] [GO:0060008 "Sertoli cell differentiation"
evidence=IMP] [GO:0060009 "Sertoli cell development" evidence=IGI]
[GO:0060018 "astrocyte fate commitment" evidence=IGI] [GO:0060041
"retina development in camera-type eye" evidence=IGI] [GO:0060221
"retinal rod cell differentiation" evidence=IGI] [GO:0060350
"endochondral bone morphogenesis" evidence=IMP] [GO:0060512
"prostate gland morphogenesis" evidence=IMP] [GO:0060517
"epithelial cell proliferation involved in prostatic bud
elongation" evidence=IMP] [GO:0060729 "intestinal epithelial
structure maintenance" evidence=IMP] [GO:0060784 "regulation of
cell proliferation involved in tissue homeostasis" evidence=IMP]
[GO:0061036 "positive regulation of cartilage development"
evidence=ISO;IDA] [GO:0061138 "morphogenesis of a branching
epithelium" evidence=IGI] [GO:0070168 "negative regulation of
biomineral tissue development" evidence=IMP] [GO:0070371 "ERK1 and
ERK2 cascade" evidence=IDA] [GO:0071260 "cellular response to
mechanical stimulus" evidence=IDA] [GO:0071300 "cellular response
to retinoic acid" evidence=IDA] [GO:0071364 "cellular response to
epidermal growth factor stimulus" evidence=IDA] [GO:0071504
"cellular response to heparin" evidence=IDA] [GO:0071560 "cellular
response to transforming growth factor beta stimulus" evidence=ISO]
[GO:0072034 "renal vesicle induction" evidence=IMP] [GO:0072197
"ureter morphogenesis" evidence=IGI] [GO:0072289 "metanephric
nephron tubule formation" evidence=IGI] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IDA] [GO:0090103 "cochlea morphogenesis" evidence=IMP]
[GO:0090184 "positive regulation of kidney development"
evidence=IGI] [GO:0090190 "positive regulation of branching
involved in ureteric bud morphogenesis" evidence=IMP] [GO:2000020
"positive regulation of male gonad development" evidence=ISO]
[GO:2000138 "positive regulation of cell proliferation involved in
heart morphogenesis" evidence=IMP] [GO:2000741 "positive regulation
of mesenchymal stem cell differentiation" evidence=ISO]
InterPro:IPR009071 Pfam:PF00505 RGD:620474 GO:GO:0003700
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0051216 InterPro:IPR022151 Pfam:PF12444 HSSP:P48432
IPI:IPI00392284 EMBL:AB073720 UniGene:Rn.95086
ProteinModelPortal:Q91WY3 STRING:Q91WY3 HOVERGEN:HBG098066
Genevestigator:Q91WY3 Uniprot:Q91WY3
Length = 164
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E++K P+V +AE
Sbjct: 86 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 144
Query: 94 KRKVEYEKDMKNY 106
+ +V++ KD +Y
Sbjct: 145 RLRVQHRKDHPDY 157
>RGD|1309235 [details] [associations]
symbol:Hmg20b "high mobility group 20 B" species:10116 "Rattus
norvegicus" [GO:0033234 "negative regulation of protein
sumoylation" evidence=IEA;ISO] [GO:0035914 "skeletal muscle cell
differentiation" evidence=ISO] [GO:0045666 "positive regulation of
neuron differentiation" evidence=IEA;ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA;ISO] InterPro:IPR009071
Pfam:PF00505 RGD:1309235 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH474029
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT IPI:IPI00365950 RefSeq:NP_001102201.1 UniGene:Rn.162912
Ensembl:ENSRNOT00000028002 GeneID:362825 KEGG:rno:362825
UCSC:RGD:1309235 NextBio:681393 Uniprot:D4A586
Length = 318
Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PK P + + F+ E REQ + HP + + K G +W + A+K Y+ +AEK
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPAEKQRYLDEAEK 125
Query: 95 RKVEYEKDMKNYNRRQA 111
K +Y K++ Y + +A
Sbjct: 126 EKQQYLKELWAYQQSEA 142
>UNIPROTKB|B3DLD3 [details] [associations]
symbol:sox18 "Transcription factor Sox-18" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0007507 "heart development" evidence=ISS] [GO:0030178 "negative
regulation of Wnt receptor signaling pathway" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007507
GO:GO:0006355 GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0030178
InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 KO:K09270 CTD:54345
EMBL:BC167402 RefSeq:NP_001123409.1 UniGene:Str.78926
GeneID:100170185 KEGG:xtr:100170185 Xenbase:XB-GENE-483233
Uniprot:B3DLD3
Length = 362
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/76 (34%), Positives = 49/76 (64%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP + +RP +AF V+ ++ R++ + +P + A + K G+ WK++S A+K P+V +AE
Sbjct: 65 DP-RIRRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGQSWKNLSSAEKRPFVEEAE 122
Query: 94 KRKVEYEKDMKNYNRR 109
+ +V++ +D NY R
Sbjct: 123 RLRVQHLQDHPNYKYR 138
>FB|FBgn0011764 [details] [associations]
symbol:Dsp1 "Dorsal switch protein 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0043388 "positive
regulation of DNA binding" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0017025 "TBP-class protein binding" evidence=IPI]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0032502 "developmental process" evidence=IMP] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0006338 "chromatin
remodeling" evidence=IMP] [GO:0007379 "segment specification"
evidence=IMP] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0035218 "leg disc development" evidence=IMP] [GO:0008348
"negative regulation of antimicrobial humoral response"
evidence=IGI;IMP] [GO:0005700 "polytene chromosome" evidence=IDA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 EMBL:AE014298 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0003697 GO:GO:0007379 GO:GO:0005700
GO:GO:0043388 Pfam:PF09011 GO:GO:0006268
GeneTree:ENSGT00560000076898 EMBL:U13881 EMBL:X89811 EMBL:X81456
EMBL:AY060841 PIR:JC6179 PIR:S50068 RefSeq:NP_542446.2
RefSeq:NP_727959.2 RefSeq:NP_727960.1 RefSeq:NP_727961.1
RefSeq:NP_996485.1 UniGene:Dm.2879 ProteinModelPortal:Q24537
SMR:Q24537 DIP:DIP-29511N MINT:MINT-344326 STRING:Q24537
PaxDb:Q24537 PRIDE:Q24537 EnsemblMetazoa:FBtr0089263 GeneID:117294
KEGG:dme:Dmel_CG12223 CTD:117294 FlyBase:FBgn0011764
InParanoid:Q24537 KO:K10802 OrthoDB:EOG480GCJ ChiTaRS:Dsp1
GenomeRNAi:117294 NextBio:841819 Bgee:Q24537 GermOnline:CG12223
GO:GO:0035218 GO:GO:0008348 GO:GO:0017055 Uniprot:Q24537
Length = 393
Score = 128 (50.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SAFF F + R + K +P+ V + K G KW + K Y + AE
Sbjct: 267 DPNAPKRSLSAFFWFCNDERNKVKALNPEF-GVGDIAKELGRKWSDVDPEVKQKYESMAE 325
Query: 94 KRKVEYEKDMKNY 106
+ K YE++M Y
Sbjct: 326 RDKARYEREMTEY 338
Score = 125 (49.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSV-AAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
KP+ +A+ F++ RE++KK HP + A + E+WK+M + +K + AEK
Sbjct: 178 KPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKD 237
Query: 96 KVEYEKDMKNY 106
K YE +M+NY
Sbjct: 238 KQRYEAEMQNY 248
>UNIPROTKB|F1LZ54 [details] [associations]
symbol:F1LZ54 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00765905
Ensembl:ENSRNOT00000045990 Uniprot:F1LZ54
Length = 160
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/84 (32%), Positives = 48/84 (57%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPY--VAK 91
P + K +++ F++ ++E++KK HP + + + K E+WK+MS +K + VAK
Sbjct: 6 PKQLKVKLNSYAFFVQAYQEEHKKKHPDSSVNFSEFSKKCSERWKTMSAKEKGKFEDVAK 65
Query: 92 AEKRKVEYEKDMKNYNRRQAEGTK 115
A+K YE++MK Y + E K
Sbjct: 66 ADK--AHYEREMKTYISPKGETKK 87
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN KRP F +F E+ + K +HP S+ V GE W +++ +K PY KA
Sbjct: 91 DPNVHKRPLLVF-LFCSEYCPKIKGEHP-GLSIGDVVTKLGEMWNNIAMENKQPYEKKAT 148
Query: 94 KRKVEYEKDM 103
K +YEKD+
Sbjct: 149 NLKEKYEKDI 158
>UNIPROTKB|Q9P0W2 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IEA]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0006325 "chromatin organization"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0007596
"blood coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_604 InterPro:IPR009071 PROSITE:PS00353
EMBL:AF331191 Pfam:PF00505 GO:GO:0005694 GO:GO:0005654
GO:GO:0003677 GO:GO:0007596 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049 EMBL:CH471139
GO:GO:0006325 EMBL:AC005786 HOVERGEN:HBG059870 CTD:10362
EMBL:AF146223 EMBL:AL355709 EMBL:AF288679 EMBL:AF072165
EMBL:AK090733 EMBL:BC002552 EMBL:BC003505 EMBL:BC004408
EMBL:BC021585 EMBL:AF072836 EMBL:CR456754 IPI:IPI00464951
IPI:IPI00478316 IPI:IPI00929221 RefSeq:NP_006330.2
UniGene:Hs.406534 ProteinModelPortal:Q9P0W2 SMR:Q9P0W2
IntAct:Q9P0W2 MINT:MINT-1372120 STRING:Q9P0W2 PhosphoSite:Q9P0W2
DMDM:57012878 PRIDE:Q9P0W2 DNASU:10362 Ensembl:ENST00000333651
GeneID:10362 KEGG:hsa:10362 UCSC:uc002lya.3 GeneCards:GC19P003572
HGNC:HGNC:5002 MIM:605535 neXtProt:NX_Q9P0W2 PharmGKB:PA29332
InParanoid:Q9P0W2 OMA:RLRKMNT ChiTaRS:HMG20B GenomeRNAi:10362
NextBio:39281 ArrayExpress:Q9P0W2 Bgee:Q9P0W2 CleanEx:HS_HMG20B
Genevestigator:Q9P0W2 GermOnline:ENSG00000064961 Uniprot:Q9P0W2
Length = 317
Score = 126 (49.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PK P + + F+ E REQ + HP + + K G +W + +K Y+ +AE+
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPTEKQRYLDEAER 125
Query: 95 RKVEYEKDMKNYNRRQA 111
K +Y K+++ Y + +A
Sbjct: 126 EKQQYMKELRAYQQSEA 142
>UNIPROTKB|Q4H0T5 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:122765 "Trachypithecus cristatus" [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0070363 "mitochondrial light strand promoter sense binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0003700 GO:GO:0003682 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
Pfam:PF09011 GO:GO:0006391 HOVERGEN:HBG106674 GO:GO:0070363
EMBL:AJ830015 ProteinModelPortal:Q4H0T5 PRIDE:Q4H0T5 Uniprot:Q4H0T5
Length = 246
Score = 123 (48.4 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SA+ V++ E ++ K D P+ K K E WK++S+++K Y+ A++ +
Sbjct: 154 KPKRPRSAYNVYVAEKFQEAKGDSPQEKL-----KTVKENWKNLSDSEKELYIRLAKEDE 208
Query: 97 VEYEKDMKNYNRRQAE-GTK 115
+ Y +MK++ + E G K
Sbjct: 209 IRYHNEMKSWEEQMIEAGRK 228
>UNIPROTKB|F6RRS7 [details] [associations]
symbol:SOX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072091 "regulation of stem cell proliferation"
evidence=IEA] [GO:0061028 "establishment of endothelial barrier"
evidence=IEA] [GO:0060956 "endocardial cell differentiation"
evidence=IEA] [GO:0060836 "lymphatic endothelial cell
differentiation" evidence=IEA] [GO:0060214 "endocardium formation"
evidence=IEA] [GO:0048866 "stem cell fate specification"
evidence=IEA] [GO:0048469 "cell maturation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0043534 "blood vessel endothelial cell migration"
evidence=IEA] [GO:0035050 "embryonic heart tube development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0001946 "lymphangiogenesis" evidence=IEA]
[GO:0001942 "hair follicle development" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0045892 GO:GO:0043565 GO:GO:0001701 GO:GO:0045944
GO:GO:0003700 GO:GO:0001525 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 GO:GO:0001942
GO:GO:0001946 GO:GO:0060836 GO:GO:0043534 GO:GO:0001570
GO:GO:0048469 GO:GO:0035050 GO:GO:0072091 GO:GO:0060956
GO:GO:0060214 GO:GO:0061028 InterPro:IPR021934 Pfam:PF12067
PROSITE:PS51516 GeneTree:ENSGT00670000097649 GO:GO:0048866
OMA:YLNCSRT EMBL:DAAA02036216 EMBL:DAAA02036215 IPI:IPI00717042
Ensembl:ENSBTAT00000015485 Uniprot:F6RRS7
Length = 388
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 25/76 (32%), Positives = 48/76 (63%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D ++ +RP +AF V+ ++ R++ + +P + A + K G+ WK +S A+K P+V +AE
Sbjct: 80 DESRIRRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGKAWKELSPAEKRPFVEEAE 138
Query: 94 KRKVEYEKDMKNYNRR 109
+ +V++ +D NY R
Sbjct: 139 RLRVQHLRDHPNYKYR 154
>FB|FBgn0038979 [details] [associations]
symbol:CG7046 species:7227 "Drosophila melanogaster"
[GO:0000785 "chromatin" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 FlyBase:FBgn0038979 EMBL:AY070828
HSSP:Q05783 ProteinModelPortal:Q8T957 SMR:Q8T957 STRING:Q8T957
PRIDE:Q8T957 eggNOG:NOG253857 InParanoid:Q8T957 OrthoDB:EOG4MCVGR
ArrayExpress:Q8T957 Bgee:Q8T957 Uniprot:Q8T957
Length = 138
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 37 KPKRPASAFFVFMEEF-REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+PK+P SAF ++M R+ + +HP + SV V GGE W++M++ K + A K
Sbjct: 7 RPKKPMSAFMLWMNSTGRKNIRAEHP-DFSVQEVSVKGGEMWRAMADEHKIVWQESASKA 65
Query: 96 KVEYEKDMKNYN 107
EY++ ++ +N
Sbjct: 66 MAEYKEKLEKWN 77
>UNIPROTKB|A6PVD3 [details] [associations]
symbol:SOX10 "Transcription factor SOX-10" species:9606
"Homo sapiens" [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA]
[GO:0000980 "RNA polymerase II distal enhancer sequence-specific
DNA binding" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0002052 "positive regulation of
neuroblast proliferation" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003705 "RNA polymerase II distal
enhancer sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007422 "peripheral nervous system development" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0014015 "positive regulation of gliogenesis" evidence=IEA]
[GO:0030318 "melanocyte differentiation" evidence=IEA] [GO:0031315
"extrinsic to mitochondrial outer membrane" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048469 "cell maturation" evidence=IEA] [GO:0048484 "enteric
nervous system development" evidence=IEA] [GO:0048546 "digestive
tract morphogenesis" evidence=IEA] [GO:0048589 "developmental
growth" evidence=IEA] [GO:0048709 "oligodendrocyte differentiation"
evidence=IEA] [GO:0048863 "stem cell differentiation" evidence=IEA]
[GO:0090090 "negative regulation of canonical Wnt receptor
signaling pathway" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0043066 GO:GO:0001755 GO:GO:0001701
GO:GO:0045944 GO:GO:0048863 GO:GO:0007422 GO:GO:0003682
GO:GO:0003705 GO:GO:0000980 GO:GO:0000978 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048589
GO:GO:0090090 GO:GO:0030318 GO:GO:0048709 GO:GO:0031315
GO:GO:0048484 GO:GO:0002052 GO:GO:0048546 GO:GO:0048469
EMBL:AL031587 GO:GO:0014015 HOVERGEN:HBG002061 InterPro:IPR022151
Pfam:PF12444 UniGene:Hs.376984 HGNC:HGNC:11190 IPI:IPI00908479
SMR:A6PVD3 STRING:A6PVD3 Ensembl:ENST00000427770 UCSC:uc010gxj.3
HOGENOM:HOG000070122 Uniprot:A6PVD3
Length = 213
Score = 120 (47.3 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 26/83 (31%), Positives = 50/83 (60%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
+KP KRP +AF V+ + R + +P + A + K G+ W+ ++E+DK P++ +AE
Sbjct: 100 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAE 158
Query: 94 KRKVEYEKDMKNYN---RRQAEG 113
+ +++++KD +Y RR+ G
Sbjct: 159 RLRMQHKKDHPDYKYQPRRRKNG 181
>UNIPROTKB|P55863 [details] [associations]
symbol:sox3-a "Transcription factor Sox-3-A" species:8355
"Xenopus laevis" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP;IDA] [GO:0001704
"formation of primary germ layer" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0008013 "beta-catenin binding" evidence=IDA] [GO:0030514
"negative regulation of BMP signaling pathway" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IDA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0005737 GO:GO:0043565
GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0090090 GO:GO:0008013
GO:GO:0030514 GO:GO:0001704 KO:K09267 InterPro:IPR022097
Pfam:PF12336 HOVERGEN:HBG105663 EMBL:AB000825 EMBL:Y07542
EMBL:BC072222 PIR:S22946 RefSeq:NP_001084148.1 UniGene:Xl.22
ProteinModelPortal:P55863 SMR:P55863 GeneID:399335 KEGG:xla:399335
CTD:6658 Xenbase:XB-GENE-484819 Uniprot:P55863
Length = 309
Score = 124 (48.7 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D ++ KRP +AF V+ R + +++PK + + + K G WK +S++DK P++ +A+
Sbjct: 36 DQDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGADWKLLSDSDKRPFIDEAK 94
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ + + KD +Y R TK
Sbjct: 95 RLRAVHMKDYPDYKYRPRRKTK 116
>UNIPROTKB|O42569 [details] [associations]
symbol:sox2 "Transcription factor Sox-2" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0007399
"nervous system development" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0030154
GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 KO:K09267
InterPro:IPR022097 Pfam:PF12336 HOVERGEN:HBG105663 CTD:6657
EMBL:AF005476 EMBL:AF022928 EMBL:BC076717 RefSeq:NP_001081691.1
UniGene:Xl.188 ProteinModelPortal:O42569 SMR:O42569 DIP:DIP-29886N
GeneID:398000 KEGG:xla:398000 Xenbase:XB-GENE-865099 Uniprot:O42569
Length = 311
Score = 124 (48.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P++ KRP +AF V+ R + +++PK + + + K G +WK +SEA+K P++ +A++
Sbjct: 34 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPFIDEAKR 92
Query: 95 RKVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 93 LRALHMKEHPDYKYRPRRKTK 113
>UNIPROTKB|Q6NVN0 [details] [associations]
symbol:sox2 "Transcription factor Sox-2" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0007399 "nervous system development" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0030154
GO:GO:0051091 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0031101 OrthoDB:EOG4MPHQV
GeneTree:ENSGT00690000101940 GO:GO:0048592 HSSP:P48432
eggNOG:NOG302715 HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097
Pfam:PF12336 CTD:6657 EMBL:CR760314 EMBL:BC067975
RefSeq:NP_998869.1 UniGene:Str.6201 ProteinModelPortal:Q6NVN0
SMR:Q6NVN0 Ensembl:ENSXETT00000004031 GeneID:407873 KEGG:xtr:407873
Xenbase:XB-GENE-484553 InParanoid:Q6NVN0 OMA:SAHNAPQ Bgee:Q6NVN0
Uniprot:Q6NVN0
Length = 311
Score = 124 (48.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P++ KRP +AF V+ R + +++PK + + + K G +WK +SEA+K P++ +A++
Sbjct: 34 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPFIDEAKR 92
Query: 95 RKVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 93 LRALHMKEHPDYKYRPRRKTK 113
>UNIPROTKB|P48430 [details] [associations]
symbol:SOX2 "Transcription factor SOX-2" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0001649
"osteoblast differentiation" evidence=IEA] [GO:0001714 "endodermal
cell fate specification" evidence=IEA] [GO:0002052 "positive
regulation of neuroblast proliferation" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0009611 "response to wounding" evidence=IEA]
[GO:0021879 "forebrain neuron differentiation" evidence=IEA]
[GO:0021984 "adenohypophysis development" evidence=IEA] [GO:0021987
"cerebral cortex development" evidence=IEA] [GO:0030539 "male
genitalia development" evidence=IEA] [GO:0030858 "positive
regulation of epithelial cell differentiation" evidence=IEA]
[GO:0030910 "olfactory placode formation" evidence=IEA] [GO:0032526
"response to retinoic acid" evidence=IEA] [GO:0035019 "somatic stem
cell maintenance" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0042472 "inner ear morphogenesis" evidence=IEA]
[GO:0043281 "regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0043410 "positive
regulation of MAPK cascade" evidence=IEA] [GO:0043586 "tongue
development" evidence=IEA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IEA] [GO:0045666 "positive regulation
of neuron differentiation" evidence=IEA] [GO:0045668 "negative
regulation of osteoblast differentiation" evidence=IEA] [GO:0045747
"positive regulation of Notch signaling pathway" evidence=IEA]
[GO:0046148 "pigment biosynthetic process" evidence=IEA]
[GO:0048286 "lung alveolus development" evidence=IEA] [GO:0048663
"neuron fate commitment" evidence=IEA] [GO:0048852 "diencephalon
morphogenesis" evidence=IEA] [GO:0050680 "negative regulation of
epithelial cell proliferation" evidence=IEA] [GO:0050910 "detection
of mechanical stimulus involved in sensory perception of sound"
evidence=IEA] [GO:0050973 "detection of mechanical stimulus
involved in equilibrioception" evidence=IEA] [GO:0060042 "retina
morphogenesis in camera-type eye" evidence=IEA] [GO:0060235 "lens
induction in camera-type eye" evidence=IEA] [GO:0060441 "epithelial
tube branching involved in lung morphogenesis" evidence=IEA]
[GO:0070848 "response to growth factor stimulus" evidence=IEA]
[GO:0090090 "negative regulation of canonical Wnt receptor
signaling pathway" evidence=IEA] [GO:0045665 "negative regulation
of neuron differentiation" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005829 GO:GO:0005634
GO:GO:0001708 GO:GO:0009611 GO:GO:0043565 GO:GO:0045944
GO:GO:0048863 GO:GO:0045665 GO:GO:0003700 GO:GO:0045747
GO:GO:0007050 GO:GO:0006351 GO:GO:0003682 GO:GO:0005667
GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0032526 GO:GO:0043410
GO:GO:0090090 GO:GO:0035198 GO:GO:0050680 GO:GO:0070848
GO:GO:0030858 GO:GO:0045668 GO:GO:0046148 GO:GO:0043281
OrthoDB:EOG4MPHQV GeneTree:ENSGT00690000101940 HOGENOM:HOG000231647
KO:K09267 InterPro:IPR022097 Pfam:PF12336 HOVERGEN:HBG105663
EMBL:U12532 EMBL:D50603 EMBL:AB092842 IPI:IPI00578945 PIR:I50706
RefSeq:NP_990519.1 UniGene:Gga.601 ProteinModelPortal:P48430
SMR:P48430 STRING:P48430 Ensembl:ENSGALT00000014379 GeneID:396105
KEGG:gga:396105 CTD:6657 InParanoid:P48430 OMA:MSALQYN
NextBio:20816163 ArrayExpress:P48430 Uniprot:P48430
Length = 315
Score = 124 (48.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P++ KRP +AF V+ R + +++PK + + + K G +WK +SEA+K P++ +A++
Sbjct: 36 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPFIDEAKR 94
Query: 95 RKVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 95 LRALHMKEHPDYKYRPRRKTK 115
>UNIPROTKB|Q90ZH7 [details] [associations]
symbol:sox18-b "Transcription factor Sox-18B" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0007507
"heart development" evidence=IMP] [GO:0030178 "negative regulation
of Wnt receptor signaling pathway" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007507 GO:GO:0006355
GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0030178 HSSP:P48431
InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 KO:K09270
EMBL:AB052693 EMBL:BC072123 RefSeq:NP_001082104.1 UniGene:Xl.11959
ProteinModelPortal:Q90ZH7 SMR:Q90ZH7 GeneID:398227 KEGG:xla:398227
CTD:398227 Xenbase:XB-GENE-6251810 Uniprot:Q90ZH7
Length = 361
Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 25/76 (32%), Positives = 49/76 (64%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP + +RP +AF V+ ++ R++ + +P + A + K G+ WK+++ A+K P+V +AE
Sbjct: 63 DP-RIRRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGQSWKNLTSAEKRPFVEEAE 120
Query: 94 KRKVEYEKDMKNYNRR 109
+ +V++ +D NY R
Sbjct: 121 RLRVQHLQDHPNYKYR 136
>UNIPROTKB|Q00059 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9606 "Homo sapiens" [GO:0031072 "heat shock protein
binding" evidence=IEA] [GO:0033108 "mitochondrial respiratory chain
complex assembly" evidence=IEA] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=IDA;TAS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IMP] [GO:0006390 "transcription from
mitochondrial promoter" evidence=IMP;TAS] [GO:0008301 "DNA binding,
bending" evidence=IDA] [GO:0006356 "regulation of transcription
from RNA polymerase I promoter" evidence=TAS] [GO:0006261
"DNA-dependent DNA replication" evidence=TAS] [GO:0005759
"mitochondrial matrix" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0006261 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645 Reactome:REACT_1788
GO:GO:0006356 GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019
eggNOG:NOG297801 HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830
GO:GO:0070363 EMBL:M62810 EMBL:EU279428 EMBL:BT019658 EMBL:BT019659
EMBL:AK312558 EMBL:AB451241 EMBL:AB451366 EMBL:AC023170
EMBL:BC126366 EMBL:X64269 IPI:IPI00020928 PIR:JC1496
RefSeq:NP_003192.1 UniGene:Hs.594250 PDB:3FGH PDB:3TMM PDB:3TQ6
PDBsum:3FGH PDBsum:3TMM PDBsum:3TQ6 ProteinModelPortal:Q00059
SMR:Q00059 IntAct:Q00059 STRING:Q00059 PhosphoSite:Q00059
DMDM:417324 PaxDb:Q00059 PRIDE:Q00059 DNASU:7019
Ensembl:ENST00000487519 GeneID:7019 KEGG:hsa:7019 UCSC:uc001jkf.3
GeneCards:GC10P060146 HGNC:HGNC:11741 HPA:HPA040648 MIM:600438
neXtProt:NX_Q00059 PharmGKB:PA36458 InParanoid:Q00059 OMA:YENEMKS
OrthoDB:EOG4KKZ4D PhylomeDB:Q00059 ChiTaRS:TFAM
EvolutionaryTrace:Q00059 GenomeRNAi:7019 NextBio:27419
ArrayExpress:Q00059 Bgee:Q00059 CleanEx:HS_TFAM
Genevestigator:Q00059 GermOnline:ENSG00000108064 Uniprot:Q00059
Length = 246
Score = 121 (47.7 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SA+ V++ E ++ K D P+ K K E WK++S+++K Y+ A++ +
Sbjct: 154 KPKRPRSAYNVYVAERFQEAKGDSPQEKL-----KTVKENWKNLSDSEKELYIQHAKEDE 208
Query: 97 VEYEKDMKNYNRRQAE-GTK 115
Y +MK++ + E G K
Sbjct: 209 TRYHNEMKSWEEQMIEVGRK 228
>ZFIN|ZDB-GENE-980526-102 [details] [associations]
symbol:sox19a "SRY-box containing gene 19a"
species:7955 "Danio rerio" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IDA] [GO:0005667
"transcription factor complex" evidence=IC] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
ZFIN:ZDB-GENE-980526-102 GO:GO:0051091 GO:GO:0005667
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00690000101940 EMBL:BX119902 InterPro:IPR022097
Pfam:PF12336 IPI:IPI00931891 Ensembl:ENSDART00000013309
ArrayExpress:E7F9F4 Bgee:E7F9F4 Uniprot:E7F9F4
Length = 314
Score = 123 (48.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 25/84 (29%), Positives = 50/84 (59%)
Query: 34 DP-NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP +K KRP +AF V+ R + +++PK + + + K G +WK +++A+K P++ +A
Sbjct: 46 DPMDKVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLTDAEKRPFIDEA 104
Query: 93 EKRKVEYEKDMKNYNRRQAEGTKP 116
++ + + K+ +Y + TKP
Sbjct: 105 KRLRALHMKEYPDYKYKPRRKTKP 128
>UNIPROTKB|P35713 [details] [associations]
symbol:SOX18 "Transcription factor SOX-18" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
[GO:0048469 "cell maturation" evidence=IEA] [GO:0048866 "stem cell
fate specification" evidence=IEA] [GO:0072091 "regulation of stem
cell proliferation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0061028 "establishment of endothelial barrier" evidence=IMP]
[GO:0001525 "angiogenesis" evidence=IEP] [GO:0043534 "blood vessel
endothelial cell migration" evidence=IEP] [GO:0001946
"lymphangiogenesis" evidence=IMP] [GO:0022405 "hair cycle process"
evidence=IMP] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0000978 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0001077 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IDA]
[GO:0042789 "mRNA transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0003151 "outflow tract morphogenesis"
evidence=ISS] [GO:0001947 "heart looping" evidence=ISS] [GO:0001570
"vasculogenesis" evidence=ISS] [GO:0001944 "vasculature
development" evidence=ISS] [GO:0035050 "embryonic heart tube
development" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0060214 "endocardium formation" evidence=ISS] [GO:0060836
"lymphatic endothelial cell differentiation" evidence=ISS]
[GO:0060956 "endocardial cell differentiation" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0001701 GO:GO:0001525
GO:GO:0000978 GO:GO:0001077 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000790
GO:GO:0001942 GO:GO:0001946 GO:GO:0060836 GO:GO:0043534
GO:GO:0001570 GO:GO:0001947 GO:GO:0003151 GO:GO:0042789
GO:GO:0048469 GO:GO:0072091 GO:GO:0060956 GO:GO:0060214
GO:GO:0061028 EMBL:AL355803 InterPro:IPR021934 Pfam:PF12067
PROSITE:PS51516 KO:K09270 HOGENOM:HOG000069999 HOVERGEN:HBG000517
GO:GO:0048866 EMBL:AJ243896 EMBL:AB033888 EMBL:AF270652
EMBL:BC038590 EMBL:BC073971 EMBL:BC111390 EMBL:X65664
IPI:IPI00020428 PIR:S22941 RefSeq:NP_060889.1 UniGene:Hs.8619
ProteinModelPortal:P35713 SMR:P35713 IntAct:P35713 STRING:P35713
PhosphoSite:P35713 DMDM:12644232 PaxDb:P35713 PRIDE:P35713
Ensembl:ENST00000340356 GeneID:54345 KEGG:hsa:54345 UCSC:uc002yhs.3
CTD:54345 GeneCards:GC20M062679 HGNC:HGNC:11194 MIM:601618
MIM:607823 neXtProt:NX_P35713 Orphanet:69735 PharmGKB:PA36031
eggNOG:NOG252325 InParanoid:P35713 OMA:YLNCSRT OrthoDB:EOG4KSPKP
GenomeRNAi:54345 NextBio:56587 Bgee:P35713 CleanEx:HS_SOX18
Genevestigator:P35713 GermOnline:ENSG00000203883 GO:GO:0022405
Uniprot:P35713
Length = 384
Score = 124 (48.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 24/76 (31%), Positives = 48/76 (63%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D ++ +RP +AF V+ ++ R++ + +P + A + K G+ WK ++ A+K P+V +AE
Sbjct: 81 DESRIRRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGKAWKELNAAEKRPFVEEAE 139
Query: 94 KRKVEYEKDMKNYNRR 109
+ +V++ +D NY R
Sbjct: 140 RLRVQHLRDHPNYKYR 155
>UNIPROTKB|O42342 [details] [associations]
symbol:sox7 "Transcription factor Sox-7" species:8355
"Xenopus laevis" [GO:0001706 "endoderm formation" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0007507 "heart development"
evidence=IMP] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] [GO:0044212 "transcription regulatory region
DNA binding" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048793 "pronephros development" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007507
GO:GO:0030154 GO:GO:0043565 GO:GO:0045944 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0030178 GO:GO:0048793 GO:GO:0001706 HSSP:P48431
InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 KO:K09270 CTD:83595
EMBL:D83649 RefSeq:NP_001079337.1 UniGene:Xl.1241
ProteinModelPortal:O42342 SMR:O42342 GeneID:378665 KEGG:xla:378665
Xenbase:XB-GENE-865761 Uniprot:O42342
Length = 362
Score = 123 (48.4 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF V+ ++ R++ +P + A + K G+ WK++S A K PYV +AE+ +V+
Sbjct: 43 RRPMNAFMVWAKDERKRLAVQNPDLHN-AELSKMLGKSWKALSPAQKRPYVEEAERLRVQ 101
Query: 99 YEKDMKNYNRR 109
+ +D NY R
Sbjct: 102 HMQDYPNYKYR 112
>UNIPROTKB|Q28GD5 [details] [associations]
symbol:sox7 "Transcription factor Sox-7" species:8364
"Xenopus (Silurana) tropicalis" [GO:0001706 "endoderm formation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0007507
"heart development" evidence=ISS] [GO:0043565 "sequence-specific
DNA binding" evidence=ISS] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISS] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0048793 "pronephros development" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007507
GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0001570 GO:GO:0048793 GO:GO:0001706 eggNOG:NOG242943
InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
GeneTree:ENSGT00670000097649 KO:K09270 HOGENOM:HOG000069999
CTD:83595 OrthoDB:EOG447FTC EMBL:CR761431 EMBL:BC170859
RefSeq:NP_001016326.1 UniGene:Str.66419 ProteinModelPortal:Q28GD5
SMR:Q28GD5 STRING:Q28GD5 Ensembl:ENSXETT00000001530 GeneID:549080
KEGG:xtr:549080 Xenbase:XB-GENE-488067 OMA:SFECSAG Bgee:Q28GD5
Uniprot:Q28GD5
Length = 362
Score = 123 (48.4 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF V+ ++ R++ +P + A + K G+ WK++S A K PYV +AE+ +V+
Sbjct: 43 RRPMNAFMVWAKDERKRLAVQNPDLHN-AELSKMLGKSWKALSPAQKRPYVEEAERLRVQ 101
Query: 99 YEKDMKNYNRR 109
+ +D NY R
Sbjct: 102 HMQDYPNYKYR 112
>UNIPROTKB|A4QNG3 [details] [associations]
symbol:sox14 "Transcription factor Sox-14" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007399 "nervous system development" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007399
GO:GO:0043565 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0021854
GeneTree:ENSGT00690000101940 CTD:8403 eggNOG:NOG302715
HOGENOM:HOG000231647 KO:K09267 OMA:LGCPSQH EMBL:AM922298
EMBL:BC135637 RefSeq:NP_001093703.1 UniGene:Str.72434
ProteinModelPortal:A4QNG3 SMR:A4QNG3 STRING:A4QNG3
Ensembl:ENSXETT00000049107 GeneID:100101715 KEGG:xtr:100101715
Xenbase:XB-GENE-485370 Bgee:A4QNG3 Uniprot:A4QNG3
Length = 239
Score = 119 (46.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP +AF V+ R + +++PK + + + K G +WK +SEA+K PY+ +A++ + +
Sbjct: 9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67
Query: 99 YEKDMKNYNRR 109
+ K+ +Y R
Sbjct: 68 HMKEHPDYKYR 78
>UNIPROTKB|B0ZTE2 [details] [associations]
symbol:sox14 "Transcription factor Sox-14" species:8355
"Xenopus laevis" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0007399 "nervous
system development" evidence=IEP] [GO:0043565 "sequence-specific
DNA binding" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0043565
GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 CTD:8403 KO:K09267 EMBL:EU403425
RefSeq:NP_001165685.1 UniGene:Xl.85736 ProteinModelPortal:B0ZTE2
SMR:B0ZTE2 GeneID:100337614 KEGG:xla:100337614
Xenbase:XB-GENE-6458188 Uniprot:B0ZTE2
Length = 239
Score = 119 (46.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP +AF V+ R + +++PK + + + K G +WK +SEA+K PY+ +A++ + +
Sbjct: 9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67
Query: 99 YEKDMKNYNRR 109
+ K+ +Y R
Sbjct: 68 HMKEHPDYKYR 78
>UNIPROTKB|Q9W7R6 [details] [associations]
symbol:SOX14 "Transcription factor SOX-14" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0043565 GO:GO:0006351 GO:GO:0000122
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AB026622 EMBL:AF193760 EMBL:M86326 IPI:IPI00585113 PIR:I50196
RefSeq:NP_990092.1 UniGene:Gga.286 ProteinModelPortal:Q9W7R6
SMR:Q9W7R6 STRING:Q9W7R6 GeneID:395526 KEGG:gga:395526 CTD:8403
eggNOG:NOG302715 HOGENOM:HOG000231647 HOVERGEN:HBG105618
InParanoid:Q9W7R6 KO:K09267 OrthoDB:EOG47D9H0 NextBio:20815603
InterPro:IPR022097 Pfam:PF12336 Uniprot:Q9W7R6
Length = 240
Score = 119 (46.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP +AF V+ R + +++PK + + + K G +WK +SEA+K PY+ +A++ + +
Sbjct: 9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67
Query: 99 YEKDMKNYNRR 109
+ K+ +Y R
Sbjct: 68 HMKEHPDYKYR 78
>UNIPROTKB|O95416 [details] [associations]
symbol:SOX14 "Transcription factor SOX-14" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007399
"nervous system development" evidence=TAS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0007399 EMBL:CH471052 GO:GO:0043565 GO:GO:0006351
GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:8403 eggNOG:NOG302715 HOGENOM:HOG000231647
HOVERGEN:HBG105618 KO:K09267 OrthoDB:EOG47D9H0 InterPro:IPR022097
Pfam:PF12336 OMA:LGCPSQH EMBL:AF107043 EMBL:AJ006230 EMBL:AF193436
EMBL:AK314127 EMBL:BC106729 EMBL:BC106730 EMBL:AF032451
IPI:IPI00030676 RefSeq:NP_004180.1 UniGene:Hs.248184
ProteinModelPortal:O95416 SMR:O95416 STRING:O95416
PhosphoSite:O95416 PRIDE:O95416 Ensembl:ENST00000306087 GeneID:8403
KEGG:hsa:8403 UCSC:uc003erm.2 GeneCards:GC03P137483 HGNC:HGNC:11193
MIM:604747 neXtProt:NX_O95416 PharmGKB:PA36030 InParanoid:O95416
PhylomeDB:O95416 GenomeRNAi:8403 NextBio:31446 Bgee:O95416
CleanEx:HS_SOX14 Genevestigator:O95416 GermOnline:ENSG00000168875
Uniprot:O95416
Length = 240
Score = 119 (46.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP +AF V+ R + +++PK + + + K G +WK +SEA+K PY+ +A++ + +
Sbjct: 9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67
Query: 99 YEKDMKNYNRR 109
+ K+ +Y R
Sbjct: 68 HMKEHPDYKYR 78
>UNIPROTKB|P61259 [details] [associations]
symbol:SOX14 "Transcription factor SOX-14" species:9541
"Macaca fascicularis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0043565 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 HOVERGEN:HBG105618
InterPro:IPR022097 Pfam:PF12336 EMBL:AB063098
ProteinModelPortal:P61259 SMR:P61259 Uniprot:P61259
Length = 240
Score = 119 (46.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP +AF V+ R + +++PK + + + K G +WK +SEA+K PY+ +A++ + +
Sbjct: 9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67
Query: 99 YEKDMKNYNRR 109
+ K+ +Y R
Sbjct: 68 HMKEHPDYKYR 78
>MGI|MGI:98362 [details] [associations]
symbol:Sox14 "SRY-box containing gene 14" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR009071
MGI:MGI:98362 Pfam:PF00505 GO:GO:0005634 GO:GO:0043565
GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 CTD:8403 eggNOG:NOG302715
HOVERGEN:HBG105618 KO:K09267 OrthoDB:EOG47D9H0 OMA:LGCPSQH
EMBL:AF193437 EMBL:AF193435 EMBL:AF182357 EMBL:Z18963
IPI:IPI00929882 PIR:S30244 RefSeq:NP_035570.1 UniGene:Mm.261595
UniGene:Mm.484077 ProteinModelPortal:Q04892 SMR:Q04892
STRING:Q04892 PhosphoSite:Q04892 PRIDE:Q04892
Ensembl:ENSMUST00000054819 GeneID:20669 KEGG:mmu:20669
InParanoid:Q04892 NextBio:299141 Bgee:Q04892 CleanEx:MM_SOX14
Genevestigator:Q04892 Uniprot:Q04892
Length = 240
Score = 119 (46.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP +AF V+ R + +++PK + + + K G +WK +SEA+K PY+ +A++ + +
Sbjct: 9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67
Query: 99 YEKDMKNYNRR 109
+ K+ +Y R
Sbjct: 68 HMKEHPDYKYR 78
>RGD|1309654 [details] [associations]
symbol:Sox14 "SRY (sex determining region Y)-box 14"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR009071
Pfam:PF00505 RGD:1309654 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH473954 CTD:8403
HOVERGEN:HBG105618 KO:K09267 OMA:LGCPSQH EMBL:EU853677
IPI:IPI00870866 RefSeq:NP_001100320.1 UniGene:Rn.141574 SMR:B7SZV3
GeneID:300954 KEGG:rno:300954 UCSC:RGD:1309654 NextBio:647780
Genevestigator:B7SZV3 Uniprot:B7SZV3
Length = 240
Score = 119 (46.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP +AF V+ R + +++PK + + + K G +WK +SEA+K PY+ +A++ + +
Sbjct: 9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67
Query: 99 YEKDMKNYNRR 109
+ K+ +Y R
Sbjct: 68 HMKEHPDYKYR 78
>MGI|MGI:107810 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=TAS]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0006391 "transcription initiation from
mitochondrial promoter" evidence=ISO] [GO:0008301 "DNA binding,
bending" evidence=ISO] [GO:0031072 "heat shock protein binding"
evidence=ISO] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IMP] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=ISO] InterPro:IPR009071
EMBL:U57939 MGI:MGI:107810 Pfam:PF00505 GO:GO:0045893 GO:GO:0003700
GO:GO:0003682 GO:GO:0005667 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D ChiTaRS:TFAM EMBL:U63858
EMBL:BC001987 EMBL:BC083084 EMBL:AK004857 EMBL:AK050446
EMBL:AK167348 EMBL:AK167777 EMBL:AK169808 EMBL:U63712 EMBL:L07107
IPI:IPI00112822 IPI:IPI00230512 PIR:I49745 RefSeq:NP_033386.1
UniGene:Mm.229292 ProteinModelPortal:P40630 SMR:P40630
IntAct:P40630 STRING:P40630 PhosphoSite:P40630 PaxDb:P40630
PRIDE:P40630 Ensembl:ENSMUST00000092430 Ensembl:ENSMUST00000105432
Ensembl:ENSMUST00000121685 GeneID:21780 KEGG:mmu:21780
UCSC:uc007fol.1 UCSC:uc007fom.1 GeneTree:ENSGT00440000039001
InParanoid:P40630 NextBio:301118 Bgee:P40630 CleanEx:MM_TFAM
Genevestigator:P40630 GermOnline:ENSMUSG00000003923 Uniprot:P40630
Length = 243
Score = 119 (46.9 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SA+ +++ E ++ K D + K K E WK++S +K Y+ A+ +
Sbjct: 153 KPKRPRSAYNIYVSESFQEAKDDSAQGKL-----KLVNEAWKNLSPEEKQAYIQLAKDDR 207
Query: 97 VEYEKDMKNYNRRQAE 112
+ Y+ +MK++ + AE
Sbjct: 208 IRYDNEMKSWEEQMAE 223
>UNIPROTKB|E2R3H4 [details] [associations]
symbol:SOX15 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048627
"myoblast development" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045843 "negative regulation of striated muscle
tissue development" evidence=IEA] [GO:0043403 "skeletal muscle
tissue regeneration" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0045944 GO:GO:0003682
GO:GO:0045843 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101940
GO:GO:0043403 GO:GO:0048627 CTD:6665 KO:K09271 OMA:PQSDPRL
EMBL:AAEX03003621 RefSeq:XP_003434661.1 ProteinModelPortal:E2R3H4
Ensembl:ENSCAFT00000026387 GeneID:100688349 KEGG:cfa:100688349
Uniprot:E2R3H4
Length = 233
Score = 118 (46.6 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KRP +AF V+ R Q + +PK + + + K G +WK + E +K P+V +A++ +
Sbjct: 48 KVKRPMNAFMVWSSAQRRQMAQQNPKMHN-SEISKRLGAQWKLLGEDEKRPFVEEAKRLR 106
Query: 97 VEYEKDMKNYNRRQAEGTK 115
+ +D +Y R TK
Sbjct: 107 ARHLRDYPDYKYRPRRKTK 125
>UNIPROTKB|F1ST29 [details] [associations]
symbol:SOX15 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048627 "myoblast development" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045843 "negative
regulation of striated muscle tissue development" evidence=IEA]
[GO:0043403 "skeletal muscle tissue regeneration" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0045944 GO:GO:0003682
GO:GO:0045843 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101940
GO:GO:0043403 GO:GO:0048627 KO:K09271 OMA:PQSDPRL EMBL:CU914279
RefSeq:XP_003131994.1 UniGene:Ssc.61757 Ensembl:ENSSSCT00000019538
GeneID:100522397 KEGG:ssc:100522397 Uniprot:F1ST29
Length = 233
Score = 118 (46.6 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KRP +AF V+ R Q + +PK + + + K G +WK + E +K P+V +A++ +
Sbjct: 48 KVKRPMNAFMVWSSAQRRQMAQQNPKMHN-SEISKRLGAQWKLLGEDEKRPFVEEAKRLR 106
Query: 97 VEYEKDMKNYNRRQAEGTK 115
+ +D +Y R TK
Sbjct: 107 ARHLRDYPDYKYRPRRKTK 125
>ZFIN|ZDB-GENE-040718-186 [details] [associations]
symbol:sox1a "SRY-box containing gene 1a"
species:7955 "Danio rerio" [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IC] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-040718-186
GO:GO:0007275 GO:GO:0051091 GO:GO:0003677 GO:GO:0006351
GO:GO:0005667 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 eggNOG:NOG321816 GeneTree:ENSGT00690000101940
HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
EMBL:AB242327 EMBL:CR392332 EMBL:BC076326 EMBL:BC096992
IPI:IPI00492442 RefSeq:NP_001002483.1 UniGene:Dr.6453
ProteinModelPortal:Q6DGL6 SMR:Q6DGL6 STRING:Q6DGL6
Ensembl:ENSDART00000102021 GeneID:436756 KEGG:dre:436756 CTD:436756
HOVERGEN:HBG105663 InParanoid:Q6DGL6 OMA:MHRYDMT OrthoDB:EOG40K80R
NextBio:20831193 Bgee:Q6DGL6 Uniprot:Q6DGL6
Length = 336
Score = 121 (47.7 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++ KRP +AF V+ R + +++PK + + + K G +WK MSEA+K P++ +A++
Sbjct: 35 DRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRL 93
Query: 96 KVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 94 RAMHMKEHPDYKYRPRRKTK 113
>ZFIN|ZDB-GENE-060322-5 [details] [associations]
symbol:sox1b "SRY-box containing gene 1b"
species:7955 "Danio rerio" [GO:0005667 "transcription factor
complex" evidence=IC] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 ZFIN:ZDB-GENE-060322-5 GO:GO:0007275 GO:GO:0051091
GO:GO:0003677 GO:GO:0006351 GO:GO:0005667 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 eggNOG:NOG321816
GeneTree:ENSGT00690000101940 HOGENOM:HOG000231647 KO:K09267
InterPro:IPR022097 Pfam:PF12336 OrthoDB:EOG40K80Q
HOVERGEN:HBG105663 EMBL:AB242328 EMBL:AL929216 EMBL:BC154495
IPI:IPI00498420 RefSeq:NP_001032751.1 UniGene:Dr.52415
ProteinModelPortal:Q2Z1R2 SMR:Q2Z1R2 STRING:Q2Z1R2 PRIDE:Q2Z1R2
Ensembl:ENSDART00000010894 GeneID:562710 KEGG:dre:562710 CTD:562710
InParanoid:Q2Z1R2 OMA:AMSTTHA NextBio:20884544 Bgee:Q2Z1R2
Uniprot:Q2Z1R2
Length = 340
Score = 121 (47.7 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++ KRP +AF V+ R + +++PK + + + K G +WK MSEA+K P++ +A++
Sbjct: 35 DRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLMSEAEKRPFIDEAKRL 93
Query: 96 KVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 94 RAMHMKEHPDYKYRPRRKTK 113
>UNIPROTKB|Q5FWM3 [details] [associations]
symbol:sox3-b "Transcription factor Sox-3-B" species:8355
"Xenopus laevis" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0001704
"formation of primary germ layer" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008013 "beta-catenin binding" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0043565 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0008013
GO:GO:0001704 HSSP:P48432 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 EMBL:BC089283 EMBL:X65654 RefSeq:NP_001166875.1
UniGene:Xl.37985 ProteinModelPortal:Q5FWM3 SMR:Q5FWM3 GeneID:398329
KEGG:xla:398329 CTD:398329 Uniprot:Q5FWM3
Length = 307
Score = 120 (47.3 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D ++ KRP +AF V+ R + +++PK + + + K G WK +S+++K P++ +A+
Sbjct: 36 DQDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGADWKLLSDSEKRPFIDEAK 94
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ + + KD +Y R TK
Sbjct: 95 RLRAVHMKDYPDYKYRPRRKTK 116
>ZFIN|ZDB-GENE-030909-1 [details] [associations]
symbol:sox2 "SRY-box containing gene 2" species:7955
"Danio rerio" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IC] [GO:0031101 "fin regeneration" evidence=IMP]
[GO:0048592 "eye morphogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
ZFIN:ZDB-GENE-030909-1 GO:GO:0005737 GO:GO:0051091 GO:GO:0003677
GO:GO:0006351 GO:GO:0005667 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031101 OrthoDB:EOG4MPHQV
GeneTree:ENSGT00690000101940 GO:GO:0048592 eggNOG:NOG302715
HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 CTD:6657 OMA:MSALQYN EMBL:AB242329 EMBL:BC056743
EMBL:BC065656 IPI:IPI00499339 RefSeq:NP_998283.1 UniGene:Dr.5379
ProteinModelPortal:Q6P0E1 SMR:Q6P0E1 STRING:Q6P0E1 PRIDE:Q6P0E1
Ensembl:ENSDART00000104493 GeneID:378723 KEGG:dre:378723
InParanoid:Q6P0E1 NextBio:20813795 Bgee:Q6P0E1 Uniprot:Q6P0E1
Length = 315
Score = 120 (47.3 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 24/81 (29%), Positives = 48/81 (59%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P++ KRP +AF V+ R + +++PK + + + K G +WK +SE++K P++ +A++
Sbjct: 35 PDRIKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSESEKRPFIDEAKR 93
Query: 95 RKVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 94 LRALHMKEHPDYKYRPRRKTK 114
>UNIPROTKB|P48431 [details] [associations]
symbol:SOX2 "Transcription factor SOX-2" species:9606 "Homo
sapiens" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0002052 "positive
regulation of neuroblast proliferation" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021984 "adenohypophysis
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030539 "male genitalia development"
evidence=IEA] [GO:0030858 "positive regulation of epithelial cell
differentiation" evidence=IEA] [GO:0030910 "olfactory placode
formation" evidence=IEA] [GO:0032526 "response to retinoic acid"
evidence=IEA] [GO:0042472 "inner ear morphogenesis" evidence=IEA]
[GO:0043586 "tongue development" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0045668 "negative regulation of osteoblast differentiation"
evidence=IEA] [GO:0045747 "positive regulation of Notch signaling
pathway" evidence=IEA] [GO:0046148 "pigment biosynthetic process"
evidence=IEA] [GO:0048286 "lung alveolus development" evidence=IEA]
[GO:0048663 "neuron fate commitment" evidence=IEA] [GO:0048852
"diencephalon morphogenesis" evidence=IEA] [GO:0050910 "detection
of mechanical stimulus involved in sensory perception of sound"
evidence=IEA] [GO:0050973 "detection of mechanical stimulus
involved in equilibrioception" evidence=IEA] [GO:0060042 "retina
morphogenesis in camera-type eye" evidence=IEA] [GO:0060235 "lens
induction in camera-type eye" evidence=IEA] [GO:0060441 "epithelial
tube branching involved in lung morphogenesis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC;IDA;NAS] [GO:0003677 "DNA
binding" evidence=IDA;NAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IDA;NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IDA;NAS] [GO:0006325 "chromatin organization"
evidence=NAS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] [GO:0001654 "eye development"
evidence=IEP] [GO:0021983 "pituitary gland development"
evidence=IEP] [GO:0030900 "forebrain development" evidence=IEP]
[GO:0048839 "inner ear development" evidence=IEP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0035019 "somatic
stem cell maintenance" evidence=IDA;IMP] [GO:0007050 "cell cycle
arrest" evidence=IDA] [GO:0043281 "regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IDA]
[GO:0050680 "negative regulation of epithelial cell proliferation"
evidence=IDA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0070848
"response to growth factor stimulus" evidence=IDA] [GO:0001649
"osteoblast differentiation" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0035198 "miRNA binding" evidence=IDA]
[GO:0043410 "positive regulation of MAPK cascade" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0009611 "response to
wounding" evidence=IEP] [GO:0021781 "glial cell fate commitment"
evidence=NAS] [GO:0045665 "negative regulation of neuron
differentiation" evidence=ISS] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0097150 "neuronal stem cell maintenance" evidence=ISS]
[GO:0001714 "endodermal cell fate specification" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0005667 "transcription factor complex" evidence=TAS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005829 GO:GO:0021987
GO:GO:0009611 GO:GO:0043565 GO:GO:0045944 GO:GO:0045665
GO:GO:0003700 GO:GO:0045747 GO:GO:0007050 GO:GO:0006351
GO:GO:0003682 Orphanet:98938 GO:GO:0005667 GO:GO:0030539
GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0042472 GO:GO:0032526
GO:GO:0048286 GO:GO:0050910 GO:GO:0043410 GO:GO:0045666
GO:GO:0090090 GO:GO:0035198 GO:GO:0035019 GO:GO:0001649
GO:GO:0021983 GO:GO:0048839 GO:GO:0050680 GO:GO:0070848
GO:GO:0060235 GO:GO:0030858 GO:GO:0001714 GO:GO:0045668
GO:GO:0006325 GO:GO:0046148 GO:GO:0021879 GO:GO:0021984
GO:GO:0002052 GO:GO:0048663 GO:GO:0030910 GO:GO:0001654
GO:GO:0060441 GO:GO:0043281 eggNOG:NOG321816 OrthoDB:EOG4MPHQV
GO:GO:0097150 GO:GO:0043586 GO:GO:0060042 GO:GO:0021781
Orphanet:3157 GO:GO:0048852 GO:GO:0050973 PDB:1O4X PDBsum:1O4X
HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 CTD:6657 OMA:MSALQYN EMBL:Z31560 EMBL:L07335
EMBL:BC013923 IPI:IPI00009703 RefSeq:NP_003097.1 UniGene:Hs.518438
UniGene:Hs.732963 PDB:2LE4 PDBsum:2LE4 ProteinModelPortal:P48431
SMR:P48431 DIP:DIP-59913N STRING:P48431 PhosphoSite:P48431
DMDM:1351091 PRIDE:P48431 DNASU:6657 Ensembl:ENST00000325404
Ensembl:ENST00000431565 GeneID:6657 KEGG:hsa:6657 UCSC:uc003fkx.3
GeneCards:GC03P181429 HGNC:HGNC:11195 HPA:CAB010648 MIM:184429
MIM:206900 neXtProt:NX_P48431 Orphanet:77298 PharmGKB:PA36032
InParanoid:P48431 PhylomeDB:P48431 EvolutionaryTrace:P48431
GenomeRNAi:6657 NextBio:25951 Bgee:P48431 CleanEx:HS_SOX2
Genevestigator:P48431 GermOnline:ENSG00000181449 Uniprot:P48431
Length = 317
Score = 120 (47.3 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P++ KRP +AF V+ R + +++PK + + + K G +WK +SE +K P++ +A++
Sbjct: 38 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSETEKRPFIDEAKR 96
Query: 95 RKVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 97 LRALHMKEHPDYKYRPRRKTK 117
>UNIPROTKB|Q90ZH8 [details] [associations]
symbol:sox18-a "Transcription factor Sox-18A" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043565 "sequence-specific
DNA binding" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0006355 GO:GO:0043565 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HSSP:P48431 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
KO:K09270 EMBL:AB052692 EMBL:BC169575 RefSeq:NP_001082102.1
UniGene:Xl.11958 ProteinModelPortal:Q90ZH8 SMR:Q90ZH8 GeneID:398226
KEGG:xla:398226 CTD:398226 Xenbase:XB-GENE-864957 Uniprot:Q90ZH8
Length = 363
Score = 121 (47.7 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 24/76 (31%), Positives = 48/76 (63%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP + +RP +AF V+ ++ R++ + +P + A + K G+ WK+++ +K P+V +AE
Sbjct: 65 DP-RIRRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGQSWKNLTSVEKRPFVEEAE 122
Query: 94 KRKVEYEKDMKNYNRR 109
+ +V++ +D NY R
Sbjct: 123 RLRVQHLQDHPNYKYR 138
>UNIPROTKB|B1PXF9 [details] [associations]
symbol:Sox2 "Sex determining region Y-box 2" species:9823
"Sus scrofa" [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA] [GO:0070848 "response to
growth factor stimulus" evidence=IEA] [GO:0060441 "epithelial tube
branching involved in lung morphogenesis" evidence=IEA] [GO:0060235
"lens induction in camera-type eye" evidence=IEA] [GO:0060042
"retina morphogenesis in camera-type eye" evidence=IEA] [GO:0050973
"detection of mechanical stimulus involved in equilibrioception"
evidence=IEA] [GO:0050910 "detection of mechanical stimulus
involved in sensory perception of sound" evidence=IEA] [GO:0050680
"negative regulation of epithelial cell proliferation"
evidence=IEA] [GO:0048852 "diencephalon morphogenesis"
evidence=IEA] [GO:0048663 "neuron fate commitment" evidence=IEA]
[GO:0048286 "lung alveolus development" evidence=IEA] [GO:0046148
"pigment biosynthetic process" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045747 "positive regulation of Notch signaling
pathway" evidence=IEA] [GO:0045668 "negative regulation of
osteoblast differentiation" evidence=IEA] [GO:0045666 "positive
regulation of neuron differentiation" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043586 "tongue development" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0043410 "positive regulation of MAPK cascade" evidence=IEA]
[GO:0043281 "regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0042472 "inner ear
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
evidence=IEA] [GO:0032526 "response to retinoic acid" evidence=IEA]
[GO:0030910 "olfactory placode formation" evidence=IEA] [GO:0030858
"positive regulation of epithelial cell differentiation"
evidence=IEA] [GO:0030539 "male genitalia development"
evidence=IEA] [GO:0021987 "cerebral cortex development"
evidence=IEA] [GO:0021984 "adenohypophysis development"
evidence=IEA] [GO:0021879 "forebrain neuron differentiation"
evidence=IEA] [GO:0009611 "response to wounding" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0002052 "positive regulation of
neuroblast proliferation" evidence=IEA] [GO:0001714 "endodermal
cell fate specification" evidence=IEA] [GO:0001649 "osteoblast
differentiation" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005829 GO:GO:0021987
GO:GO:0009611 GO:GO:0043565 GO:GO:0045944 GO:GO:0045665
GO:GO:0003700 GO:GO:0045747 GO:GO:0007050 GO:GO:0003682
GO:GO:0005667 GO:GO:0030539 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0042472 GO:GO:0032526 GO:GO:0048286 GO:GO:0050910
GO:GO:0043410 GO:GO:0045666 GO:GO:0090090 GO:GO:0035198
GO:GO:0035019 GO:GO:0001649 GO:GO:0050680 GO:GO:0070848
GO:GO:0060235 GO:GO:0030858 GO:GO:0001714 GO:GO:0045668
GO:GO:0046148 GO:GO:0021879 GO:GO:0021984 GO:GO:0002052
GO:GO:0048663 GO:GO:0030910 GO:GO:0060441 GO:GO:0043281
eggNOG:NOG321816 OrthoDB:EOG4MPHQV GeneTree:ENSGT00690000101940
GO:GO:0043586 GO:GO:0060042 GO:GO:0048852 GO:GO:0050973
HOGENOM:HOG000231647 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 OMA:MSALQYN EMBL:CU914271 EMBL:EU503117
UniGene:Ssc.42849 ProteinModelPortal:B1PXF9 SMR:B1PXF9
STRING:B1PXF9 Ensembl:ENSSSCT00000012883 Uniprot:B1PXF9
Length = 319
Score = 120 (47.3 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P++ KRP +AF V+ R + +++PK + + + K G +WK +SE +K P++ +A++
Sbjct: 40 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSETEKRPFIDEAKR 98
Query: 95 RKVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 99 LRALHMKEHPDYKYRPRRKTK 119
>MGI|MGI:98364 [details] [associations]
symbol:Sox2 "SRY-box containing gene 2" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0000976
"transcription regulatory region sequence-specific DNA binding"
evidence=ISO] [GO:0001077 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=ISO]
[GO:0001649 "osteoblast differentiation" evidence=ISO] [GO:0001708
"cell fate specification" evidence=IMP] [GO:0001714 "endodermal
cell fate specification" evidence=ISO] [GO:0002052 "positive
regulation of neuroblast proliferation" evidence=IMP] [GO:0003677
"DNA binding" evidence=ISO;IGI;IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO;IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IC;ISO;IDA] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005829
"cytosol" evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO;IDA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0007050 "cell cycle arrest" evidence=ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IMP] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0010468
"regulation of gene expression" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=IMP] [GO:0021879 "forebrain neuron
differentiation" evidence=IMP] [GO:0021984 "adenohypophysis
development" evidence=IMP] [GO:0021987 "cerebral cortex
development" evidence=IMP] [GO:0030178 "negative regulation of Wnt
receptor signaling pathway" evidence=IGI] [GO:0030539 "male
genitalia development" evidence=IMP] [GO:0030858 "positive
regulation of epithelial cell differentiation" evidence=IDA]
[GO:0030910 "olfactory placode formation" evidence=IGI] [GO:0032526
"response to retinoic acid" evidence=IDA] [GO:0035019 "somatic stem
cell maintenance" evidence=ISO] [GO:0035198 "miRNA binding"
evidence=ISO] [GO:0042221 "response to chemical stimulus"
evidence=IDA] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043281 "regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=ISO] [GO:0043410 "positive
regulation of MAPK cascade" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO;IDA] [GO:0043586
"tongue development" evidence=IMP] [GO:0044212 "transcription
regulatory region DNA binding" evidence=ISO;IDA] [GO:0045165 "cell
fate commitment" evidence=IDA] [GO:0045596 "negative regulation of
cell differentiation" evidence=IMP] [GO:0045665 "negative
regulation of neuron differentiation" evidence=IDA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IMP]
[GO:0045668 "negative regulation of osteoblast differentiation"
evidence=IDA] [GO:0045747 "positive regulation of Notch signaling
pathway" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO;IGI;IMP;IDA] [GO:0046148 "pigment biosynthetic
process" evidence=IMP] [GO:0048286 "lung alveolus development"
evidence=IDA] [GO:0048568 "embryonic organ development"
evidence=IMP] [GO:0048646 "anatomical structure formation involved
in morphogenesis" evidence=IMP] [GO:0048663 "neuron fate
commitment" evidence=IMP] [GO:0048852 "diencephalon morphogenesis"
evidence=IMP] [GO:0048863 "stem cell differentiation" evidence=IDA]
[GO:0050680 "negative regulation of epithelial cell proliferation"
evidence=ISO] [GO:0050767 "regulation of neurogenesis"
evidence=IGI] [GO:0050910 "detection of mechanical stimulus
involved in sensory perception of sound" evidence=IMP] [GO:0050973
"detection of mechanical stimulus involved in equilibrioception"
evidence=IMP] [GO:0060042 "retina morphogenesis in camera-type eye"
evidence=IMP] [GO:0060235 "lens induction in camera-type eye"
evidence=IGI] [GO:0060441 "epithelial tube branching involved in
lung morphogenesis" evidence=IDA] [GO:0070848 "response to growth
factor stimulus" evidence=ISO] [GO:0090090 "negative regulation of
canonical Wnt receptor signaling pathway" evidence=ISO;IDA]
[GO:0097150 "neuronal stem cell maintenance" evidence=IGI]
InterPro:IPR009071 MGI:MGI:98364 Pfam:PF00505 GO:GO:0005737
GO:GO:0021987 GO:GO:0043565 GO:GO:0045944 GO:GO:0045665
GO:GO:0003700 GO:GO:0045747 GO:GO:0006351 GO:GO:0003682
GO:GO:0005667 GO:GO:0030539 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0042472 GO:GO:0032526 GO:GO:0048286 GO:GO:0050910
GO:GO:0045666 GO:GO:0090090 GO:GO:0060235 GO:GO:0030858
GO:GO:0001714 GO:GO:0045668 GO:GO:0046148 GO:GO:0021879
GO:GO:0021984 GO:GO:0002052 GO:GO:0048663 GO:GO:0030910
GO:GO:0060441 eggNOG:NOG321816 OrthoDB:EOG4MPHQV GO:GO:0097150
GO:GO:0043586 GO:GO:0060042 GO:GO:0048852 GO:GO:0050973 PDB:1GT0
PDBsum:1GT0 HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097
Pfam:PF12336 HOVERGEN:HBG105663 CTD:6657 EMBL:U31967 EMBL:X94127
IPI:IPI00319017 PIR:S10949 RefSeq:NP_035573.3 UniGene:Mm.65396
ProteinModelPortal:P48432 SMR:P48432 DIP:DIP-54522N IntAct:P48432
STRING:P48432 PhosphoSite:P48432 PRIDE:P48432 GeneID:20674
KEGG:mmu:20674 InParanoid:P48432 EvolutionaryTrace:P48432
NextBio:299161 CleanEx:MM_SOX2 Genevestigator:P48432
GermOnline:ENSMUSG00000074637 Uniprot:P48432
Length = 319
Score = 120 (47.3 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P++ KRP +AF V+ R + +++PK + + + K G +WK +SE +K P++ +A++
Sbjct: 40 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSETEKRPFIDEAKR 98
Query: 95 RKVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 99 LRALHMKEHPDYKYRPRRKTK 119
>RGD|1565646 [details] [associations]
symbol:Sox2 "SRY (sex determining region Y)-box 2" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000976 "transcription regulatory region sequence-specific DNA
binding" evidence=IDA] [GO:0001077 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding transcription factor
activity involved in positive regulation of transcription"
evidence=IDA] [GO:0001649 "osteoblast differentiation"
evidence=IEA;ISO] [GO:0001654 "eye development" evidence=ISO]
[GO:0001708 "cell fate specification" evidence=ISO] [GO:0001714
"endodermal cell fate specification" evidence=IEA;ISO] [GO:0002052
"positive regulation of neuroblast proliferation" evidence=IEA;ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA;ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667
"transcription factor complex" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0007050 "cell cycle
arrest" evidence=IEA;ISO] [GO:0007605 "sensory perception of sound"
evidence=ISO] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0009611 "response to wounding" evidence=IEA;ISO] [GO:0010468
"regulation of gene expression" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=ISO] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA;ISO] [GO:0021983 "pituitary gland
development" evidence=ISO] [GO:0021984 "adenohypophysis
development" evidence=IEA;ISO] [GO:0021987 "cerebral cortex
development" evidence=IEA;ISO] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=ISO] [GO:0030539 "male
genitalia development" evidence=IEA;ISO] [GO:0030858 "positive
regulation of epithelial cell differentiation" evidence=IEA;ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030910
"olfactory placode formation" evidence=IEA;ISO] [GO:0032526
"response to retinoic acid" evidence=IEA;ISO] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA;ISO] [GO:0035198 "miRNA
binding" evidence=IEA;ISO] [GO:0042221 "response to chemical
stimulus" evidence=ISO] [GO:0042472 "inner ear morphogenesis"
evidence=IEA;ISO] [GO:0043281 "regulation of cysteine-type
endopeptidase activity involved in apoptotic process"
evidence=IEA;ISO] [GO:0043410 "positive regulation of MAPK cascade"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=ISO] [GO:0043586 "tongue development" evidence=IEA;ISO]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=ISO] [GO:0045165 "cell fate commitment" evidence=ISO]
[GO:0045596 "negative regulation of cell differentiation"
evidence=ISO] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA;ISO] [GO:0045666 "positive regulation
of neuron differentiation" evidence=IEA;ISO] [GO:0045668 "negative
regulation of osteoblast differentiation" evidence=IEA;ISO]
[GO:0045747 "positive regulation of Notch signaling pathway"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO;IDA] [GO:0046148 "pigment biosynthetic process"
evidence=IEA;ISO] [GO:0048286 "lung alveolus development"
evidence=IEA;ISO] [GO:0048568 "embryonic organ development"
evidence=ISO] [GO:0048646 "anatomical structure formation involved
in morphogenesis" evidence=ISO] [GO:0048663 "neuron fate
commitment" evidence=IEA;ISO] [GO:0048839 "inner ear development"
evidence=ISO] [GO:0048852 "diencephalon morphogenesis"
evidence=IEA;ISO] [GO:0048863 "stem cell differentiation"
evidence=ISO] [GO:0050680 "negative regulation of epithelial cell
proliferation" evidence=IEA;ISO] [GO:0050767 "regulation of
neurogenesis" evidence=ISO] [GO:0050910 "detection of mechanical
stimulus involved in sensory perception of sound" evidence=IEA;ISO]
[GO:0050973 "detection of mechanical stimulus involved in
equilibrioception" evidence=IEA;ISO] [GO:0060042 "retina
morphogenesis in camera-type eye" evidence=IEA;ISO] [GO:0060235
"lens induction in camera-type eye" evidence=IEA;ISO] [GO:0060441
"epithelial tube branching involved in lung morphogenesis"
evidence=IEA;ISO] [GO:0070848 "response to growth factor stimulus"
evidence=IEA;ISO] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA;ISO] [GO:0097150 "neuronal
stem cell maintenance" evidence=ISO] InterPro:IPR009071
Pfam:PF00505 RGD:1565646 GO:GO:0005829 GO:GO:0005634 GO:GO:0021987
GO:GO:0009611 GO:GO:0045944 GO:GO:0045665 GO:GO:0003700
GO:GO:0045747 GO:GO:0007050 GO:GO:0003682 GO:GO:0005667
GO:GO:0030539 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042472 GO:GO:0032526
GO:GO:0048286 GO:GO:0050910 GO:GO:0043410 GO:GO:0045666
GO:GO:0090090 GO:GO:0035198 GO:GO:0035019 GO:GO:0001649
GO:GO:0000976 GO:GO:0050680 GO:GO:0070848 GO:GO:0060235
GO:GO:0030858 GO:GO:0001714 GO:GO:0045668 GO:GO:0046148
GO:GO:0021879 GO:GO:0021984 GO:GO:0002052 GO:GO:0048663
GO:GO:0030910 GO:GO:0060441 GO:GO:0043281 EMBL:CH473961
OrthoDB:EOG4MPHQV GeneTree:ENSGT00690000101940 GO:GO:0043586
GO:GO:0060042 GO:GO:0048852 GO:GO:0050973 KO:K09267
InterPro:IPR022097 Pfam:PF12336 CTD:6657 OMA:MSALQYN
IPI:IPI00215605 RefSeq:NP_001102651.1 UniGene:Rn.17369 SMR:D4A543
Ensembl:ENSRNOT00000016236 GeneID:499593 KEGG:rno:499593
UCSC:RGD:1565646 NextBio:703377 Uniprot:D4A543
Length = 319
Score = 120 (47.3 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P++ KRP +AF V+ R + +++PK + + + K G +WK +SE +K P++ +A++
Sbjct: 40 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSETEKRPFIDEAKR 98
Query: 95 RKVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 99 LRALHMKEHPDYKYRPRRKTK 119
>UNIPROTKB|A2VDX8 [details] [associations]
symbol:SOX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090090 "negative regulation of canonical Wnt receptor
signaling pathway" evidence=IEA] [GO:0070848 "response to growth
factor stimulus" evidence=IEA] [GO:0060441 "epithelial tube
branching involved in lung morphogenesis" evidence=IEA] [GO:0060235
"lens induction in camera-type eye" evidence=IEA] [GO:0060042
"retina morphogenesis in camera-type eye" evidence=IEA] [GO:0050973
"detection of mechanical stimulus involved in equilibrioception"
evidence=IEA] [GO:0050910 "detection of mechanical stimulus
involved in sensory perception of sound" evidence=IEA] [GO:0050680
"negative regulation of epithelial cell proliferation"
evidence=IEA] [GO:0048852 "diencephalon morphogenesis"
evidence=IEA] [GO:0048663 "neuron fate commitment" evidence=IEA]
[GO:0048286 "lung alveolus development" evidence=IEA] [GO:0046148
"pigment biosynthetic process" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045747 "positive regulation of Notch signaling
pathway" evidence=IEA] [GO:0045668 "negative regulation of
osteoblast differentiation" evidence=IEA] [GO:0045666 "positive
regulation of neuron differentiation" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043586 "tongue development" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0043410 "positive regulation of MAPK cascade" evidence=IEA]
[GO:0043281 "regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0042472 "inner ear
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
evidence=IEA] [GO:0032526 "response to retinoic acid" evidence=IEA]
[GO:0030910 "olfactory placode formation" evidence=IEA] [GO:0030858
"positive regulation of epithelial cell differentiation"
evidence=IEA] [GO:0030539 "male genitalia development"
evidence=IEA] [GO:0021987 "cerebral cortex development"
evidence=IEA] [GO:0021984 "adenohypophysis development"
evidence=IEA] [GO:0021879 "forebrain neuron differentiation"
evidence=IEA] [GO:0009611 "response to wounding" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0002052 "positive regulation of
neuroblast proliferation" evidence=IEA] [GO:0001714 "endodermal
cell fate specification" evidence=IEA] [GO:0001649 "osteoblast
differentiation" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005829 GO:GO:0021987
GO:GO:0009611 GO:GO:0043565 GO:GO:0045944 GO:GO:0045665
GO:GO:0003700 GO:GO:0045747 GO:GO:0007050 GO:GO:0003682
GO:GO:0005667 GO:GO:0030539 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0042472 GO:GO:0032526 GO:GO:0048286 GO:GO:0050910
GO:GO:0043410 GO:GO:0045666 GO:GO:0090090 GO:GO:0035198
GO:GO:0035019 GO:GO:0001649 GO:GO:0050680 GO:GO:0070848
GO:GO:0060235 GO:GO:0030858 GO:GO:0001714 GO:GO:0045668
GO:GO:0046148 GO:GO:0021879 GO:GO:0021984 GO:GO:0002052
GO:GO:0048663 GO:GO:0030910 GO:GO:0060441 GO:GO:0043281
eggNOG:NOG321816 OrthoDB:EOG4MPHQV GeneTree:ENSGT00690000101940
GO:GO:0043586 GO:GO:0060042 GO:GO:0048852 GO:GO:0050973
HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 CTD:6657 OMA:MSALQYN EMBL:DAAA02001921
EMBL:BC133458 IPI:IPI00701823 RefSeq:NP_001098933.1
UniGene:Bt.103364 SMR:A2VDX8 STRING:A2VDX8
Ensembl:ENSBTAT00000015411 GeneID:784383 KEGG:bta:784383
InParanoid:A2VDX8 NextBio:20926664 Uniprot:A2VDX8
Length = 320
Score = 120 (47.3 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P++ KRP +AF V+ R + +++PK + + + K G +WK +SE +K P++ +A++
Sbjct: 41 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSETEKRPFIDEAKR 99
Query: 95 RKVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 100 LRALHMKEHPDYKYRPRRKTK 120
>UNIPROTKB|P54231 [details] [associations]
symbol:SOX2 "Transcription factor SOX-2" species:9940 "Ovis
aries" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0044212 "transcription
regulatory region DNA binding" evidence=ISS] [GO:0045665 "negative
regulation of neuron differentiation" evidence=ISS] [GO:0097150
"neuronal stem cell maintenance" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0045665 GO:GO:0006351
GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0097150 InterPro:IPR022097
Pfam:PF12336 HOVERGEN:HBG105663 EMBL:X96997
ProteinModelPortal:P54231 SMR:P54231 Uniprot:P54231
Length = 320
Score = 120 (47.3 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P++ KRP +AF V+ R + +++PK + + + K G +WK +SE +K P++ +A++
Sbjct: 41 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSETEKRPFIDEAKR 99
Query: 95 RKVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 100 LRALHMKEHPDYKYRPRRKTK 120
>SGD|S000002160 [details] [associations]
symbol:NHP10 "Protein related to mammalian high mobility
group proteins" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0042766 "nucleosome mobilization"
evidence=IDA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IGI;IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045027 "DNA end binding" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 SGD:S000002160 Pfam:PF00505
GO:GO:0006355 EMBL:BK006938 GO:GO:0006351 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0031011 GO:GO:0006302 GO:GO:0042766 EMBL:Z48008 GO:GO:0000404
GO:GO:0045027 PIR:S50980 RefSeq:NP_010282.3 RefSeq:NP_010286.3
ProteinModelPortal:Q03435 SMR:Q03435 DIP:DIP-1387N IntAct:Q03435
MINT:MINT-388714 STRING:Q03435 PaxDb:Q03435 PeptideAtlas:Q03435
EnsemblFungi:YDL002C GeneID:851562 GeneID:851566 KEGG:sce:YDL002C
KEGG:sce:YDR003W CYGD:YDL002c HOGENOM:HOG000001026 KO:K11680
OMA:AYLLFCE OrthoDB:EOG4RV61X NextBio:968998 Genevestigator:Q03435
GermOnline:YDL002C Uniprot:Q03435
Length = 203
Score = 115 (45.5 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP +A+ ++ E +E+ ++ N S+ V + E WK+++E D+ PY
Sbjct: 90 DPNMPKRPTNAYLLYCEMNKERIRQ----NGSLD-VTRDLAEGWKNLNEQDRKPYYKLYS 144
Query: 94 KRKVEYEKDMKNYNRR 109
+ + Y+ +M+ YN++
Sbjct: 145 EDRERYQMEMEIYNKK 160
>UNIPROTKB|E2R1W3 [details] [associations]
symbol:SOX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA] [GO:0070848 "response to
growth factor stimulus" evidence=IEA] [GO:0060441 "epithelial tube
branching involved in lung morphogenesis" evidence=IEA] [GO:0060235
"lens induction in camera-type eye" evidence=IEA] [GO:0060042
"retina morphogenesis in camera-type eye" evidence=IEA] [GO:0050973
"detection of mechanical stimulus involved in equilibrioception"
evidence=IEA] [GO:0050910 "detection of mechanical stimulus
involved in sensory perception of sound" evidence=IEA] [GO:0050680
"negative regulation of epithelial cell proliferation"
evidence=IEA] [GO:0048852 "diencephalon morphogenesis"
evidence=IEA] [GO:0048663 "neuron fate commitment" evidence=IEA]
[GO:0048286 "lung alveolus development" evidence=IEA] [GO:0046148
"pigment biosynthetic process" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045747 "positive regulation of Notch signaling
pathway" evidence=IEA] [GO:0045668 "negative regulation of
osteoblast differentiation" evidence=IEA] [GO:0045666 "positive
regulation of neuron differentiation" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043586 "tongue development" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0043410 "positive regulation of MAPK cascade" evidence=IEA]
[GO:0043281 "regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0042472 "inner ear
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
evidence=IEA] [GO:0032526 "response to retinoic acid" evidence=IEA]
[GO:0030910 "olfactory placode formation" evidence=IEA] [GO:0030858
"positive regulation of epithelial cell differentiation"
evidence=IEA] [GO:0030539 "male genitalia development"
evidence=IEA] [GO:0021987 "cerebral cortex development"
evidence=IEA] [GO:0021984 "adenohypophysis development"
evidence=IEA] [GO:0021879 "forebrain neuron differentiation"
evidence=IEA] [GO:0009611 "response to wounding" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0002052 "positive regulation of
neuroblast proliferation" evidence=IEA] [GO:0001714 "endodermal
cell fate specification" evidence=IEA] [GO:0001649 "osteoblast
differentiation" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005829 GO:GO:0021987
GO:GO:0009611 GO:GO:0043565 GO:GO:0045944 GO:GO:0045665
GO:GO:0003700 GO:GO:0045747 GO:GO:0007050 GO:GO:0003682
GO:GO:0005667 GO:GO:0030539 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0042472 GO:GO:0032526 GO:GO:0048286 GO:GO:0050910
GO:GO:0043410 GO:GO:0045666 GO:GO:0090090 GO:GO:0035198
GO:GO:0035019 GO:GO:0001649 GO:GO:0050680 GO:GO:0070848
GO:GO:0060235 GO:GO:0030858 GO:GO:0001714 GO:GO:0045668
GO:GO:0046148 GO:GO:0021879 GO:GO:0021984 GO:GO:0002052
GO:GO:0048663 GO:GO:0030910 GO:GO:0060441 GO:GO:0043281
GeneTree:ENSGT00690000101940 GO:GO:0043586 GO:GO:0060042
GO:GO:0048852 GO:GO:0050973 KO:K09267 InterPro:IPR022097
Pfam:PF12336 CTD:6657 OMA:MSALQYN EMBL:AAEX03017262
RefSeq:XP_545216.3 Ensembl:ENSCAFT00000018476 GeneID:488092
KEGG:cfa:488092 NextBio:20861523 Uniprot:E2R1W3
Length = 324
Score = 120 (47.3 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P++ KRP +AF V+ R + +++PK + + + K G +WK +SE +K P++ +A++
Sbjct: 45 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSETEKRPFIDEAKR 103
Query: 95 RKVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 104 LRALHMKEHPDYKYRPRRKTK 124
>UNIPROTKB|Q90ZH9 [details] [associations]
symbol:sox17a-b "Transcription factor Sox-17-alpha-B"
species:8355 "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0007442 "hindgut morphogenesis" evidence=IMP] [GO:0007492
"endoderm development" evidence=IMP] [GO:0007494 "midgut
development" evidence=IMP] [GO:0008013 "beta-catenin binding"
evidence=ISS] [GO:0042074 "cell migration involved in gastrulation"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0016055
GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 GO:GO:0007494
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0008013 GO:GO:0042074 GO:GO:0007492 GO:GO:0007442 HSSP:P48431
KO:K04495 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
EMBL:AB052691 EMBL:BC060350 RefSeq:NP_001083136.1 UniGene:Xl.11957
ProteinModelPortal:Q90ZH9 SMR:Q90ZH9 GeneID:398765 KEGG:xla:398765
CTD:398765 Xenbase:XB-GENE-6255435 Uniprot:Q90ZH9
Length = 377
Score = 121 (47.7 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF V+ ++ R++ + +P + A + K G+ WK++S A+K P+V +AE+ +V+
Sbjct: 59 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALSLAEKRPFVEEAERLRVQ 117
Query: 99 YEKDMKNYNRR 109
+ +D NY R
Sbjct: 118 HMQDHPNYKYR 128
>UNIPROTKB|Q3KQ35 [details] [associations]
symbol:sox17a-a "Transcription factor Sox-17-alpha-A"
species:8355 "Xenopus laevis" [GO:0005634 "nucleus" evidence=IDA]
[GO:0007440 "foregut morphogenesis" evidence=IMP] [GO:0007442
"hindgut morphogenesis" evidence=IMP] [GO:0007492 "endoderm
development" evidence=IMP] [GO:0007494 "midgut development"
evidence=IMP] [GO:0008013 "beta-catenin binding" evidence=IDA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IDA] [GO:0042074 "cell migration involved in gastrulation"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0090090 "negative regulation of canonical Wnt receptor
signaling pathway" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0008285 GO:GO:0016055 GO:GO:0043565
GO:GO:0045944 GO:GO:0006351 GO:GO:0007494 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0090090
GO:GO:0008013 GO:GO:0042074 GO:GO:0007492 GO:GO:0007440
GO:GO:0007442 HSSP:P48431 EMBL:AJ001730 EMBL:BC106403 EMBL:AB052690
RefSeq:NP_001081631.1 UniGene:Xl.3831 ProteinModelPortal:Q3KQ35
SMR:Q3KQ35 GeneID:397966 KEGG:xla:397966 CTD:397966
Xenbase:XB-GENE-865067 KO:K04495 InterPro:IPR021934 Pfam:PF12067
PROSITE:PS51516 Uniprot:Q3KQ35
Length = 380
Score = 121 (47.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF V+ ++ R++ + +P + A + K G+ WKS++ A+K P+V +AE+ +V+
Sbjct: 62 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKSLTLAEKRPFVEEAERLRVQ 120
Query: 99 YEKDMKNYNRR 109
+ +D NY R
Sbjct: 121 HMQDHPNYKYR 131
>CGD|CAL0004040 [details] [associations]
symbol:HMO1 species:5476 "Candida albicans" [GO:0000790
"nuclear chromatin" evidence=IPI] [GO:0043565 "sequence-specific
DNA binding" evidence=IDA] [GO:0019318 "hexose metabolic process"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IPI] [GO:0032443 "regulation of ergosterol
biosynthetic process" evidence=IPI] [GO:0007346 "regulation of
mitotic cell cycle" evidence=IPI] [GO:1900461 "positive regulation
of pseudohyphal growth by positive regulation of transcription from
RNA polymerase II promoter" evidence=IGI] [GO:2000220 "regulation
of pseudohyphal growth" evidence=IGI] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0000400
"four-way junction DNA binding" evidence=IEA] [GO:0060962
"regulation of ribosomal protein gene transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0034401 "regulation of
transcription by chromatin organization" evidence=IEA] [GO:0006356
"regulation of transcription from RNA polymerase I promoter"
evidence=IEA] InterPro:IPR009071 CGD:CAL0004040 Pfam:PF00505
GO:GO:0007346 GO:GO:0043565 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:1900461
GO:GO:0044182 GO:GO:0032443 EMBL:AACQ01000165 EMBL:AACQ01000186
GO:GO:0019318 RefSeq:XP_711711.1 RefSeq:XP_712185.1
ProteinModelPortal:Q59PR9 STRING:Q59PR9 GeneID:3646217
GeneID:3646685 KEGG:cal:CaO19.13966 KEGG:cal:CaO19.6645
Uniprot:Q59PR9
Length = 223
Score = 116 (45.9 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 34 DPNKPKRPASAFFVFMEEFR-----EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
DPN PK+P + FF F + R E+ KKD P + S + ++W S+SEA+KA Y
Sbjct: 83 DPNAPKKPLTMFFQFSYDLRKKIGIERKKKDLP-SLSAIDMNSMIKDRWDSISEAEKAGY 141
Query: 89 VAKAEKRKVEYEKDMKNYNRRQAEGT 114
+ + + Y + K Y +G+
Sbjct: 142 KKRYDDAMIIYNIEKKKYEESLKDGS 167
>UNIPROTKB|Q59PR9 [details] [associations]
symbol:HMO1 "Potential HMG-like DNA binding protein Hmo1p"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IPI] [GO:0007346 "regulation
of mitotic cell cycle" evidence=IPI] [GO:0019318 "hexose metabolic
process" evidence=IPI] [GO:0032443 "regulation of ergosterol
biosynthetic process" evidence=IPI] [GO:0043565 "sequence-specific
DNA binding" evidence=IDA] [GO:0044182 "filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900461
"positive regulation of pseudohyphal growth by positive regulation
of transcription from RNA polymerase II promoter" evidence=IGI]
[GO:2000220 "regulation of pseudohyphal growth" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=IPI] InterPro:IPR009071
CGD:CAL0004040 Pfam:PF00505 GO:GO:0007346 GO:GO:0043565
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:1900461 GO:GO:0044182 GO:GO:0032443
EMBL:AACQ01000165 EMBL:AACQ01000186 GO:GO:0019318
RefSeq:XP_711711.1 RefSeq:XP_712185.1 ProteinModelPortal:Q59PR9
STRING:Q59PR9 GeneID:3646217 GeneID:3646685 KEGG:cal:CaO19.13966
KEGG:cal:CaO19.6645 Uniprot:Q59PR9
Length = 223
Score = 116 (45.9 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 34 DPNKPKRPASAFFVFMEEFR-----EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
DPN PK+P + FF F + R E+ KKD P + S + ++W S+SEA+KA Y
Sbjct: 83 DPNAPKKPLTMFFQFSYDLRKKIGIERKKKDLP-SLSAIDMNSMIKDRWDSISEAEKAGY 141
Query: 89 VAKAEKRKVEYEKDMKNYNRRQAEGT 114
+ + + Y + K Y +G+
Sbjct: 142 KKRYDDAMIIYNIEKKKYEESLKDGS 167
>UNIPROTKB|F1M4J9 [details] [associations]
symbol:F1M4J9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00562835
Ensembl:ENSRNOT00000051890 Uniprot:F1M4J9
Length = 196
Score = 114 (45.2 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ P+ P++ F+F + + K +HP + S+ V K G W + +E DK P KA
Sbjct: 79 DPSAPEPPSA--FLFCSRYHSKTKGEHP-DLSIGDVAKKLGLMWNNTAEDDKQPIKKKAF 135
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
K K ++EKD+ Y ++ K
Sbjct: 136 KLKEKFEKDIA-YRAKENNAGK 156
>UNIPROTKB|B4DWU7 [details] [associations]
symbol:SOX15 "Protein SOX-15" species:9606 "Homo sapiens"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0043403 "skeletal muscle tissue regeneration"
evidence=IEA] [GO:0045843 "negative regulation of striated muscle
tissue development" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048627 "myoblast development" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0045944 GO:GO:0003682 GO:GO:0045843 GO:GO:0000122
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0043403 EMBL:AC016876 GO:GO:0048627 IPI:IPI00028451
HGNC:HGNC:11196 HOVERGEN:HBG055512 EMBL:AK301687 SMR:B4DWU7
STRING:B4DWU7 Ensembl:ENST00000570788 Uniprot:B4DWU7
Length = 178
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KRP +AF V+ R Q + +PK + + + K G +WK + E +K P+V +A++ +
Sbjct: 48 KVKRPMNAFMVWSSAQRRQMAQQNPKMHN-SEISKRLGAQWKLLDEDEKRPFVEEAKRLR 106
Query: 97 VEYEKDMKNYN---RRQAEGT 114
+ +D +Y RR+A+ +
Sbjct: 107 ARHLRDYPDYKYRPRRKAKSS 127
>ZFIN|ZDB-GENE-011026-1 [details] [associations]
symbol:sox32 "SRY-box containing gene 32"
species:7955 "Danio rerio" [GO:0001706 "endoderm formation"
evidence=IDA;IMP] [GO:0003007 "heart morphogenesis" evidence=IMP]
[GO:0007498 "mesoderm development" evidence=IDA] [GO:0001885
"endothelial cell development" evidence=IMP] [GO:0035050 "embryonic
heart tube development" evidence=IMP] [GO:0007368 "determination of
left/right symmetry" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IGI;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=IGI;IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0007492
"endoderm development" evidence=IMP] [GO:0007493 "endodermal cell
fate determination" evidence=IMP] [GO:0042074 "cell migration
involved in gastrulation" evidence=IMP] [GO:0003262 "endocardial
progenitor cell migration to the midline involved in heart field
formation" evidence=IMP] [GO:0061035 "regulation of cartilage
development" evidence=IGI;IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] InterPro:IPR009071 Pfam:PF00505
ZFIN:ZDB-GENE-011026-1 GO:GO:0005634 GO:GO:0045893 GO:GO:0007498
GO:GO:0003677 GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007368 GO:GO:0042074
GO:GO:0001885 GO:GO:0035050 GO:GO:0007493 GO:GO:0061035 HSSP:P48432
GO:GO:0003262 EMBL:BC097087 EMBL:AF362749 IPI:IPI00494054
RefSeq:NP_571926.1 UniGene:Dr.133216 SMR:Q90Z46 STRING:Q90Z46
GeneID:116990 KEGG:dre:116990 CTD:116990 HOVERGEN:HBG098276
InParanoid:Q90Z46 NextBio:20796959 Uniprot:Q90Z46
Length = 307
Score = 119 (46.9 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF ++ +E R + + +P ++ + K G+ WK+MS ADK PY+ +AE+ +++
Sbjct: 71 RRPLNAFIIWTKEERRRLAQLNPDLENTD-LSKILGKTWKAMSLADKRPYMQEAERLRIQ 129
Query: 99 YEKDMKNYNRR 109
+ D NY R
Sbjct: 130 HTIDYPNYKYR 140
>UNIPROTKB|P48433 [details] [associations]
symbol:SOX3 "Transcription factor SOX-3" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000979
"RNA polymerase II core promoter sequence-specific DNA binding"
evidence=ISS] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=ISS] [GO:0045665 "negative
regulation of neuron differentiation" evidence=IMP] [GO:0060324
"face development" evidence=ISS] [GO:0007423 "sensory organ
development" evidence=ISS] [GO:0021983 "pituitary gland
development" evidence=ISS] [GO:0021854 "hypothalamus development"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007423 GO:GO:0045665
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0060324 GO:GO:0021983 GO:GO:0000979 GO:GO:0001106
GO:GO:0021854 UniGene:Gga.3795 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 EMBL:U12467 IPI:IPI00586970 PIR:I50705
ProteinModelPortal:P48433 SMR:P48433 Uniprot:P48433
Length = 312
Score = 119 (46.9 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D ++ KRP +AF V+ R + +++PK + + + K G WK +S+A+K P++ +A+
Sbjct: 42 DQDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGADWKLLSDAEKRPFIDEAK 100
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ + + K+ +Y R TK
Sbjct: 101 RLRAVHMKEYPDYKYRPRRKTK 122
>UNIPROTKB|Q9PSV6 [details] [associations]
symbol:Sox3 "SOX3" species:9031 "Gallus gallus" [GO:0000979
"RNA polymerase II core promoter sequence-specific DNA binding"
evidence=IEA] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=IEA] [GO:0007423 "sensory organ
development" evidence=IEA] [GO:0007530 "sex determination"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IEA]
[GO:0021854 "hypothalamus development" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0048515 "spermatid
differentiation" evidence=IEA] [GO:0060009 "Sertoli cell
development" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000979
GO:GO:0001106 UniGene:Gga.3795 GeneTree:ENSGT00690000101940
HSSP:P48432 HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097
Pfam:PF12336 HOVERGEN:HBG105663 CTD:6658 OMA:AQSYMNV
EMBL:AADN02013475 EMBL:AB011803 EMBL:AB753847 IPI:IPI00820761
RefSeq:NP_989526.1 SMR:Q9PSV6 STRING:Q9PSV6
Ensembl:ENSGALT00000011718 GeneID:374019 KEGG:gga:374019
InParanoid:Q9PSV6 NextBio:20813546 Uniprot:Q9PSV6
Length = 316
Score = 119 (46.9 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D ++ KRP +AF V+ R + +++PK + + + K G WK +S+A+K P++ +A+
Sbjct: 44 DQDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGADWKLLSDAEKRPFIDEAK 102
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ + + K+ +Y R TK
Sbjct: 103 RLRAVHMKEYPDYKYRPRRKTK 124
>UNIPROTKB|O73668 [details] [associations]
symbol:Sox9 "SOX9" species:9031 "Gallus gallus" [GO:0001046
"core promoter sequence-specific DNA binding" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA]
[GO:0001502 "cartilage condensation" evidence=IEA] [GO:0001503
"ossification" evidence=IEA] [GO:0001658 "branching involved in
ureteric bud morphogenesis" evidence=IEA] [GO:0001708 "cell fate
specification" evidence=IEA] [GO:0001837 "epithelial to mesenchymal
transition" evidence=IEA] [GO:0001934 "positive regulation of
protein phosphorylation" evidence=IEA] [GO:0001942 "hair follicle
development" evidence=IEA] [GO:0002053 "positive regulation of
mesenchymal cell proliferation" evidence=IEA] [GO:0002683 "negative
regulation of immune system process" evidence=IEA] [GO:0003188
"heart valve formation" evidence=IEA] [GO:0003203 "endocardial
cushion morphogenesis" evidence=IEA] [GO:0003413 "chondrocyte
differentiation involved in endochondral bone morphogenesis"
evidence=IEA] [GO:0003415 "chondrocyte hypertrophy" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003705 "RNA
polymerase II distal enhancer sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006461 "protein complex assembly" evidence=IEA] [GO:0007173
"epidermal growth factor receptor signaling pathway" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0010564 "regulation of
cell cycle process" evidence=IEA] [GO:0010634 "positive regulation
of epithelial cell migration" evidence=IEA] [GO:0014032 "neural
crest cell development" evidence=IEA] [GO:0014068 "positive
regulation of phosphatidylinositol 3-kinase cascade" evidence=IEA]
[GO:0019100 "male germ-line sex determination" evidence=IEA]
[GO:0019933 "cAMP-mediated signaling" evidence=IEA] [GO:0030155
"regulation of cell adhesion" evidence=IEA] [GO:0030198
"extracellular matrix organization" evidence=IEA] [GO:0030502
"negative regulation of bone mineralization" evidence=IEA]
[GO:0030858 "positive regulation of epithelial cell
differentiation" evidence=IEA] [GO:0030879 "mammary gland
development" evidence=IEA] [GO:0030903 "notochord development"
evidence=IEA] [GO:0030916 "otic vesicle formation" evidence=IEA]
[GO:0031018 "endocrine pancreas development" evidence=IEA]
[GO:0032331 "negative regulation of chondrocyte differentiation"
evidence=IEA] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=IEA] [GO:0034236 "protein kinase A
catalytic subunit binding" evidence=IEA] [GO:0035019 "somatic stem
cell maintenance" evidence=IEA] [GO:0035622 "intrahepatic bile duct
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043491 "protein kinase B
signaling cascade" evidence=IEA] [GO:0045662 "negative regulation
of myoblast differentiation" evidence=IEA] [GO:0045732 "positive
regulation of protein catabolic process" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046533 "negative regulation of photoreceptor cell
differentiation" evidence=IEA] [GO:0048709 "oligodendrocyte
differentiation" evidence=IEA] [GO:0050679 "positive regulation of
epithelial cell proliferation" evidence=IEA] [GO:0050680 "negative
regulation of epithelial cell proliferation" evidence=IEA]
[GO:0060009 "Sertoli cell development" evidence=IEA] [GO:0060018
"astrocyte fate commitment" evidence=IEA] [GO:0060174 "limb bud
formation" evidence=IEA] [GO:0060221 "retinal rod cell
differentiation" evidence=IEA] [GO:0060517 "epithelial cell
proliferation involved in prostatic bud elongation" evidence=IEA]
[GO:0060729 "intestinal epithelial structure maintenance"
evidence=IEA] [GO:0060784 "regulation of cell proliferation
involved in tissue homeostasis" evidence=IEA] [GO:0061036 "positive
regulation of cartilage development" evidence=IEA] [GO:0070371
"ERK1 and ERK2 cascade" evidence=IEA] [GO:0071260 "cellular
response to mechanical stimulus" evidence=IEA] [GO:0071300
"cellular response to retinoic acid" evidence=IEA] [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071364
"cellular response to epidermal growth factor stimulus"
evidence=IEA] [GO:0071504 "cellular response to heparin"
evidence=IEA] [GO:0071560 "cellular response to transforming growth
factor beta stimulus" evidence=IEA] [GO:0072034 "renal vesicle
induction" evidence=IEA] [GO:0072190 "ureter urothelium
development" evidence=IEA] [GO:0072197 "ureter morphogenesis"
evidence=IEA] [GO:0072289 "metanephric nephron tubule formation"
evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA] [GO:0090103 "cochlea
morphogenesis" evidence=IEA] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=IEA]
[GO:2000020 "positive regulation of male gonad development"
evidence=IEA] [GO:2000138 "positive regulation of cell
proliferation involved in heart morphogenesis" evidence=IEA]
[GO:2000741 "positive regulation of mesenchymal stem cell
differentiation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
GO:GO:0006461 GO:GO:0030155 GO:GO:0071560 GO:GO:0019933
GO:GO:0070371 GO:GO:0071300 GO:GO:0030198 GO:GO:0014068
GO:GO:0003682 GO:GO:0003705 GO:GO:0001077 GO:GO:0006338
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0004672 GO:GO:0071504 GO:GO:0032332 GO:GO:0090090
GO:GO:0071260 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
GO:GO:0043491 GO:GO:0045732 GO:GO:0050680 GO:GO:0071347
GO:GO:0001158 GO:GO:0030858 GO:GO:0010634 GO:GO:0016585
GO:GO:0006334 GO:GO:0050679 GO:GO:0002053 GO:GO:0001046
GO:GO:0030502 GO:GO:2000138 GO:GO:0061036 GO:GO:0032331
GO:GO:0045662 GO:GO:2000020 GO:GO:0010564
GeneTree:ENSGT00670000097649 HOVERGEN:HBG002061 KO:K09270
InterPro:IPR022151 Pfam:PF12444 HSSP:P48432 GO:GO:2000741
GO:GO:0072034 GO:GO:0002683 CTD:6662 UniGene:Gga.890
EMBL:AADN02030063 EMBL:AB012236 IPI:IPI00603266 RefSeq:NP_989612.1
SMR:O73668 STRING:O73668 Ensembl:ENSGALT00000006994 GeneID:374148
KEGG:gga:374148 InParanoid:O73668 NextBio:20813662 Uniprot:O73668
Length = 494
Score = 122 (48.0 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E++K P+V +AE
Sbjct: 101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 160 RLRVQHKKDHPDY 172
>UNIPROTKB|P48434 [details] [associations]
symbol:SOX9 "Transcription factor SOX-9" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEP] [GO:0001658 "branching involved in
ureteric bud morphogenesis" evidence=IEP] [GO:0003170 "heart valve
development" evidence=IEP] [GO:0071300 "cellular response to
retinoic acid" evidence=IEP] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0071300
GO:GO:0006351 GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0001658 GO:GO:0003170
eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061
InterPro:IPR022151 Pfam:PF12444 OrthoDB:EOG4TXBRZ EMBL:U12533
IPI:IPI00589733 UniGene:Gga.890 ProteinModelPortal:P48434
SMR:P48434 STRING:P48434 InParanoid:P48434 Uniprot:P48434
Length = 494
Score = 122 (48.0 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E++K P+V +AE
Sbjct: 102 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 160
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 161 RLRVQHKKDHPDY 173
>UNIPROTKB|F1P307 [details] [associations]
symbol:SOX9 "Transcription factor SOX-9" species:9031
"Gallus gallus" [GO:0001046 "core promoter sequence-specific DNA
binding" evidence=IEA] [GO:0001077 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding transcription factor
activity involved in positive regulation of transcription"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001502 "cartilage condensation" evidence=IEA]
[GO:0001503 "ossification" evidence=IEA] [GO:0001658 "branching
involved in ureteric bud morphogenesis" evidence=IEA] [GO:0001708
"cell fate specification" evidence=IEA] [GO:0001837 "epithelial to
mesenchymal transition" evidence=IEA] [GO:0001934 "positive
regulation of protein phosphorylation" evidence=IEA] [GO:0001942
"hair follicle development" evidence=IEA] [GO:0002053 "positive
regulation of mesenchymal cell proliferation" evidence=IEA]
[GO:0002683 "negative regulation of immune system process"
evidence=IEA] [GO:0003188 "heart valve formation" evidence=IEA]
[GO:0003203 "endocardial cushion morphogenesis" evidence=IEA]
[GO:0003413 "chondrocyte differentiation involved in endochondral
bone morphogenesis" evidence=IEA] [GO:0003415 "chondrocyte
hypertrophy" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0006461 "protein complex
assembly" evidence=IEA] [GO:0007173 "epidermal growth factor
receptor signaling pathway" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0008013 "beta-catenin binding"
evidence=IEA] [GO:0010564 "regulation of cell cycle process"
evidence=IEA] [GO:0010634 "positive regulation of epithelial cell
migration" evidence=IEA] [GO:0014032 "neural crest cell
development" evidence=IEA] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0019100
"male germ-line sex determination" evidence=IEA] [GO:0019933
"cAMP-mediated signaling" evidence=IEA] [GO:0030155 "regulation of
cell adhesion" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030502 "negative regulation of
bone mineralization" evidence=IEA] [GO:0030858 "positive regulation
of epithelial cell differentiation" evidence=IEA] [GO:0030879
"mammary gland development" evidence=IEA] [GO:0030903 "notochord
development" evidence=IEA] [GO:0030916 "otic vesicle formation"
evidence=IEA] [GO:0031018 "endocrine pancreas development"
evidence=IEA] [GO:0032331 "negative regulation of chondrocyte
differentiation" evidence=IEA] [GO:0032332 "positive regulation of
chondrocyte differentiation" evidence=IEA] [GO:0034236 "protein
kinase A catalytic subunit binding" evidence=IEA] [GO:0035019
"somatic stem cell maintenance" evidence=IEA] [GO:0035622
"intrahepatic bile duct development" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0043491 "protein kinase B signaling cascade" evidence=IEA]
[GO:0045662 "negative regulation of myoblast differentiation"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0046533 "negative
regulation of photoreceptor cell differentiation" evidence=IEA]
[GO:0048709 "oligodendrocyte differentiation" evidence=IEA]
[GO:0050679 "positive regulation of epithelial cell proliferation"
evidence=IEA] [GO:0050680 "negative regulation of epithelial cell
proliferation" evidence=IEA] [GO:0060009 "Sertoli cell development"
evidence=IEA] [GO:0060018 "astrocyte fate commitment" evidence=IEA]
[GO:0060174 "limb bud formation" evidence=IEA] [GO:0060221 "retinal
rod cell differentiation" evidence=IEA] [GO:0060517 "epithelial
cell proliferation involved in prostatic bud elongation"
evidence=IEA] [GO:0060729 "intestinal epithelial structure
maintenance" evidence=IEA] [GO:0060784 "regulation of cell
proliferation involved in tissue homeostasis" evidence=IEA]
[GO:0061036 "positive regulation of cartilage development"
evidence=IEA] [GO:0070371 "ERK1 and ERK2 cascade" evidence=IEA]
[GO:0071260 "cellular response to mechanical stimulus"
evidence=IEA] [GO:0071300 "cellular response to retinoic acid"
evidence=IEA] [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071364 "cellular response to epidermal growth
factor stimulus" evidence=IEA] [GO:0071504 "cellular response to
heparin" evidence=IEA] [GO:0071560 "cellular response to
transforming growth factor beta stimulus" evidence=IEA] [GO:0072034
"renal vesicle induction" evidence=IEA] [GO:0072190 "ureter
urothelium development" evidence=IEA] [GO:0072197 "ureter
morphogenesis" evidence=IEA] [GO:0072289 "metanephric nephron
tubule formation" evidence=IEA] [GO:0090090 "negative regulation of
canonical Wnt receptor signaling pathway" evidence=IEA] [GO:0090103
"cochlea morphogenesis" evidence=IEA] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:2000020 "positive regulation of male gonad
development" evidence=IEA] [GO:2000138 "positive regulation of cell
proliferation involved in heart morphogenesis" evidence=IEA]
[GO:2000741 "positive regulation of mesenchymal stem cell
differentiation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
GO:GO:0006461 GO:GO:0030155 GO:GO:0071560 GO:GO:0019933
GO:GO:0070371 GO:GO:0071300 GO:GO:0030198 GO:GO:0014068
GO:GO:0003682 GO:GO:0003705 GO:GO:0001077 GO:GO:0006338
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0004672 GO:GO:0071504 GO:GO:0032332 GO:GO:0090090
GO:GO:0071260 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
GO:GO:0043491 GO:GO:0045732 GO:GO:0050680 GO:GO:0071347
GO:GO:0001158 GO:GO:0030858 GO:GO:0010634 GO:GO:0016585
GO:GO:0006334 GO:GO:0050679 GO:GO:0002053 GO:GO:0001046
GO:GO:0030502 GO:GO:2000138 GO:GO:0061036 GO:GO:0032331
GO:GO:0045662 GO:GO:2000020 GO:GO:0010564
GeneTree:ENSGT00670000097649 InterPro:IPR022151 Pfam:PF12444
GO:GO:2000741 GO:GO:0072034 GO:GO:0002683 OMA:GAGHVWM
EMBL:AADN02030063 IPI:IPI00818672 Ensembl:ENSGALT00000038513
Uniprot:F1P307
Length = 496
Score = 122 (48.0 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E++K P+V +AE
Sbjct: 103 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 161
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 162 RLRVQHKKDHPDY 174
>UNIPROTKB|F1MIK5 [details] [associations]
symbol:SOX1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0021884 "forebrain neuron development" evidence=IEA]
[GO:0021521 "ventral spinal cord interneuron specification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0002089 "lens
morphogenesis in camera-type eye" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0001046 "core promoter
sequence-specific DNA binding" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0001046 GeneTree:ENSGT00690000101940
KO:K09267 InterPro:IPR022097 Pfam:PF12336 OMA:MHRYDMT CTD:6656
EMBL:DAAA02034934 IPI:IPI00693232 RefSeq:XP_002692040.1
RefSeq:XP_875555.1 Ensembl:ENSBTAT00000052847 GeneID:618135
KEGG:bta:618135 NextBio:20901019 Uniprot:F1MIK5
Length = 369
Score = 120 (47.3 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++ KRP +AF V+ R + +++PK + + + K G +WK MSEA+K P++ +A++
Sbjct: 44 DRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRL 102
Query: 96 KVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 103 RALHMKEHPDYKYRPRRKTK 122
>UNIPROTKB|F1LY72 [details] [associations]
symbol:F1LY72 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00568202 Ensembl:ENSRNOT00000048758 Uniprot:F1LY72
Length = 203
Score = 114 (45.2 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ P+ P++ F+F + + K +HP + S+ V K G W + +E DK P KA
Sbjct: 79 DPSAPEPPSA--FLFCSRYHSKTKGEHP-DLSIGDVAKKLGLMWNNTAEDDKQPIKKKAF 135
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
K K ++EKD+ Y ++ K
Sbjct: 136 KLKEKFEKDIA-YRAKENNAGK 156
>UNIPROTKB|F1LZG8 [details] [associations]
symbol:F1LZG8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00560402
Ensembl:ENSRNOT00000043102 Uniprot:F1LZG8
Length = 203
Score = 114 (45.2 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ P+ P++ F+F + + K +HP + S+ V K G W + +E DK P KA
Sbjct: 79 DPSAPEPPSA--FLFCSRYHSKTKGEHP-DLSIGDVAKKLGLMWNNTAEDDKQPIKKKAF 135
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
K K ++EKD+ Y ++ K
Sbjct: 136 KLKEKFEKDIA-YRAKENNAGK 156
>MGI|MGI:98371 [details] [associations]
symbol:Sox9 "SRY-box containing gene 9" species:10090 "Mus
musculus" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IDA] [GO:0001046 "core
promoter sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO;IDA] [GO:0001158
"enhancer sequence-specific DNA binding" evidence=IDA] [GO:0001501
"skeletal system development" evidence=ISO] [GO:0001502 "cartilage
condensation" evidence=IMP] [GO:0001708 "cell fate specification"
evidence=IMP] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IMP] [GO:0001894 "tissue homeostasis" evidence=IMP]
[GO:0001934 "positive regulation of protein phosphorylation"
evidence=IMP;IDA] [GO:0001942 "hair follicle development"
evidence=IMP] [GO:0002053 "positive regulation of mesenchymal cell
proliferation" evidence=IMP] [GO:0002063 "chondrocyte development"
evidence=IMP] [GO:0002683 "negative regulation of immune system
process" evidence=IMP] [GO:0003170 "heart valve development"
evidence=IMP] [GO:0003179 "heart valve morphogenesis" evidence=IMP]
[GO:0003188 "heart valve formation" evidence=IMP] [GO:0003203
"endocardial cushion morphogenesis" evidence=IMP] [GO:0003413
"chondrocyte differentiation involved in endochondral bone
morphogenesis" evidence=ISO] [GO:0003415 "chondrocyte hypertrophy"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISO;IMP;IDA]
[GO:0003705 "RNA polymerase II distal enhancer sequence-specific
DNA binding transcription factor activity" evidence=ISO;IDA]
[GO:0004672 "protein kinase activity" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
evidence=IPI] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0006461 "protein complex assembly"
evidence=ISO] [GO:0007165 "signal transduction" evidence=IMP]
[GO:0007173 "epidermal growth factor receptor signaling pathway"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IGI]
[GO:0007507 "heart development" evidence=IMP] [GO:0008013
"beta-catenin binding" evidence=IPI] [GO:0008284 "positive
regulation of cell proliferation" evidence=ISO;IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0008584 "male gonad development" evidence=ISO;IGI;IMP]
[GO:0010564 "regulation of cell cycle process" evidence=ISO]
[GO:0010628 "positive regulation of gene expression" evidence=IGI]
[GO:0010634 "positive regulation of epithelial cell migration"
evidence=ISO;ISS] [GO:0014032 "neural crest cell development"
evidence=IMP] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IMP] [GO:0019100
"male germ-line sex determination" evidence=IMP] [GO:0019933
"cAMP-mediated signaling" evidence=ISO] [GO:0030154 "cell
differentiation" evidence=IMP] [GO:0030155 "regulation of cell
adhesion" evidence=IMP] [GO:0030198 "extracellular matrix
organization" evidence=IMP] [GO:0030238 "male sex determination"
evidence=IGI] [GO:0030279 "negative regulation of ossification"
evidence=IMP] [GO:0030502 "negative regulation of bone
mineralization" evidence=IMP] [GO:0030858 "positive regulation of
epithelial cell differentiation" evidence=IMP] [GO:0030916 "otic
vesicle formation" evidence=IMP] [GO:0031018 "endocrine pancreas
development" evidence=IMP] [GO:0032331 "negative regulation of
chondrocyte differentiation" evidence=IMP] [GO:0032332 "positive
regulation of chondrocyte differentiation" evidence=ISO;IDA;IMP]
[GO:0034236 "protein kinase A catalytic subunit binding"
evidence=ISO] [GO:0035019 "somatic stem cell maintenance"
evidence=IMP] [GO:0035326 "enhancer binding" evidence=ISO;IDA]
[GO:0035622 "intrahepatic bile duct development" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043491 "protein kinase B signaling cascade" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IDA] [GO:0045165 "cell fate commitment" evidence=IGI]
[GO:0045595 "regulation of cell differentiation" evidence=IMP]
[GO:0045662 "negative regulation of myoblast differentiation"
evidence=IDA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO;IMP;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISO;IMP;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter"
evidence=ISO;IGI;IMP;IDA] [GO:0046533 "negative regulation of
photoreceptor cell differentiation" evidence=IGI] [GO:0048709
"oligodendrocyte differentiation" evidence=IMP] [GO:0050679
"positive regulation of epithelial cell proliferation"
evidence=IMP] [GO:0050680 "negative regulation of epithelial cell
proliferation" evidence=IMP] [GO:0051216 "cartilage development"
evidence=IMP] [GO:0060008 "Sertoli cell differentiation"
evidence=IMP] [GO:0060009 "Sertoli cell development" evidence=IGI]
[GO:0060018 "astrocyte fate commitment" evidence=IGI] [GO:0060041
"retina development in camera-type eye" evidence=IGI] [GO:0060221
"retinal rod cell differentiation" evidence=IGI] [GO:0060350
"endochondral bone morphogenesis" evidence=IMP] [GO:0060512
"prostate gland morphogenesis" evidence=IMP] [GO:0060517
"epithelial cell proliferation involved in prostatic bud
elongation" evidence=IMP] [GO:0060729 "intestinal epithelial
structure maintenance" evidence=IMP] [GO:0060784 "regulation of
cell proliferation involved in tissue homeostasis" evidence=IMP]
[GO:0061036 "positive regulation of cartilage development"
evidence=ISO;IDA] [GO:0061138 "morphogenesis of a branching
epithelium" evidence=IGI] [GO:0070168 "negative regulation of
biomineral tissue development" evidence=IMP] [GO:0070371 "ERK1 and
ERK2 cascade" evidence=IDA] [GO:0071260 "cellular response to
mechanical stimulus" evidence=IDA] [GO:0071300 "cellular response
to retinoic acid" evidence=IDA] [GO:0071364 "cellular response to
epidermal growth factor stimulus" evidence=IDA] [GO:0071504
"cellular response to heparin" evidence=IDA] [GO:0071560 "cellular
response to transforming growth factor beta stimulus" evidence=ISO]
[GO:0072034 "renal vesicle induction" evidence=IMP] [GO:0072197
"ureter morphogenesis" evidence=IGI] [GO:0072289 "metanephric
nephron tubule formation" evidence=IGI] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IDA] [GO:0090103 "cochlea morphogenesis" evidence=IMP]
[GO:0090184 "positive regulation of kidney development"
evidence=IGI] [GO:0090190 "positive regulation of branching
involved in ureteric bud morphogenesis" evidence=IMP] [GO:2000020
"positive regulation of male gonad development" evidence=ISO]
[GO:2000138 "positive regulation of cell proliferation involved in
heart morphogenesis" evidence=IMP] [GO:2000741 "positive regulation
of mesenchymal stem cell differentiation" evidence=ISO]
InterPro:IPR009071 MGI:MGI:98371 Pfam:PF00505 GO:GO:0001708
GO:GO:0007173 GO:GO:0045892 GO:GO:0043066 GO:GO:0006461
GO:GO:0030155 GO:GO:0071560 GO:GO:0019933 GO:GO:0070371
GO:GO:0071300 GO:GO:0030198 GO:GO:0014068 GO:GO:0007283
GO:GO:0003682 GO:GO:0005667 GO:GO:0003705 GO:GO:0001077
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504 GO:GO:0001942
GO:GO:0032332 GO:GO:0060009 GO:GO:0090090 GO:GO:0071260
GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
GO:GO:0031018 GO:GO:0043491 GO:GO:0014032 GO:GO:0001502
GO:GO:0045732 GO:GO:0001837 GO:GO:0050680 GO:GO:0001503
GO:GO:0001658 GO:GO:0071347 GO:GO:0001158 GO:GO:0030858
GO:GO:0048709 GO:GO:0010634 GO:GO:0016585 GO:GO:0006334
GO:GO:0003413 GO:GO:0030879 GO:GO:0050679 GO:GO:0002053
GO:GO:0001046 GO:GO:0030502 GO:GO:2000138 GO:GO:0061036
GO:GO:0003203 GO:GO:0032331 GO:GO:0045662 GO:GO:0030916
GO:GO:2000020 GO:GO:0046533 GO:GO:0060174 GO:GO:0030903
GO:GO:0090103 GO:GO:0010564 GO:GO:0019100 GO:GO:0060018
GO:GO:0035622 GO:GO:0072190 GO:GO:0072289 GO:GO:0072197
GO:GO:0003188 eggNOG:NOG295709 GeneTree:ENSGT00670000097649
HOVERGEN:HBG002061 KO:K09270 InterPro:IPR022151 Pfam:PF12444
GO:GO:2000741 GO:GO:0072034 GO:GO:0060221 OrthoDB:EOG4TXBRZ
GO:GO:0003415 GO:GO:0060517 GO:GO:0060729 GO:GO:0002683
GO:GO:0060784 CTD:6662 OMA:GAGHVWM EMBL:AF421878 EMBL:AK030187
EMBL:AK049986 EMBL:BC004064 EMBL:BC023796 EMBL:BC023808
EMBL:BC023953 EMBL:BC024958 EMBL:BC034264 EMBL:Z18958
IPI:IPI00131219 PIR:S30243 PIR:S52469 RefSeq:NP_035578.3
UniGene:Mm.286407 ProteinModelPortal:Q04887 SMR:Q04887
IntAct:Q04887 STRING:Q04887 PhosphoSite:Q04887 PRIDE:Q04887
Ensembl:ENSMUST00000000579 GeneID:20682 KEGG:mmu:20682
InParanoid:Q04887 NextBio:299193 Bgee:Q04887 CleanEx:MM_SOX9
Genevestigator:Q04887 GermOnline:ENSMUSG00000000567 Uniprot:Q04887
Length = 507
Score = 122 (48.0 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E++K P+V +AE
Sbjct: 101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 160 RLRVQHKKDHPDY 172
>UNIPROTKB|O57401 [details] [associations]
symbol:SOX1 "Transcription factor SOX-1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HSSP:P48432 KO:K09267 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 EMBL:AB011802 IPI:IPI00597708 RefSeq:NP_989664.1
UniGene:Gga.165 ProteinModelPortal:O57401 SMR:O57401 GeneID:374240
KEGG:gga:374240 CTD:6656 NextBio:20813736 Uniprot:O57401
Length = 373
Score = 120 (47.3 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++ KRP +AF V+ R + +++PK + + + K G +WK MSEA+K P++ +A++
Sbjct: 46 DRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRL 104
Query: 96 KVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 105 RALHMKEHPDYKYRPRRKTK 124
>UNIPROTKB|P48436 [details] [associations]
symbol:SOX9 "Transcription factor SOX-9" species:9606 "Homo
sapiens" [GO:0001503 "ossification" evidence=IEA] [GO:0001658
"branching involved in ureteric bud morphogenesis" evidence=IEA]
[GO:0003188 "heart valve formation" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0014032 "neural crest cell
development" evidence=IEA] [GO:0030155 "regulation of cell
adhesion" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030502 "negative regulation of
bone mineralization" evidence=IEA] [GO:0030879 "mammary gland
development" evidence=IEA] [GO:0030903 "notochord development"
evidence=IEA] [GO:0031018 "endocrine pancreas development"
evidence=IEA] [GO:0035622 "intrahepatic bile duct development"
evidence=IEA] [GO:0043425 "bHLH transcription factor binding"
evidence=IEA] [GO:0043491 "protein kinase B signaling cascade"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] [GO:0048709 "oligodendrocyte
differentiation" evidence=IEA] [GO:0060009 "Sertoli cell
development" evidence=IEA] [GO:0060018 "astrocyte fate commitment"
evidence=IEA] [GO:0060174 "limb bud formation" evidence=IEA]
[GO:0072190 "ureter urothelium development" evidence=IEA]
[GO:0072197 "ureter morphogenesis" evidence=IEA] [GO:2000138
"positive regulation of cell proliferation involved in heart
morphogenesis" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEP;IMP] [GO:0001708 "cell fate specification"
evidence=ISS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0001942 "hair follicle development" evidence=ISS]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=ISS] [GO:0003203 "endocardial cushion morphogenesis"
evidence=ISS] [GO:0007283 "spermatogenesis" evidence=ISS]
[GO:0019100 "male germ-line sex determination" evidence=ISS]
[GO:0030858 "positive regulation of epithelial cell
differentiation" evidence=ISS] [GO:0032331 "negative regulation of
chondrocyte differentiation" evidence=ISS] [GO:0035019 "somatic
stem cell maintenance" evidence=ISS] [GO:0042127 "regulation of
cell proliferation" evidence=ISS] [GO:0042981 "regulation of
apoptotic process" evidence=ISS] [GO:0045662 "negative regulation
of myoblast differentiation" evidence=ISS] [GO:0046533 "negative
regulation of photoreceptor cell differentiation" evidence=ISS]
[GO:0050679 "positive regulation of epithelial cell proliferation"
evidence=IEP;ISS] [GO:0050680 "negative regulation of epithelial
cell proliferation" evidence=ISS] [GO:0060008 "Sertoli cell
differentiation" evidence=ISS] [GO:0060041 "retina development in
camera-type eye" evidence=ISS] [GO:0060221 "retinal rod cell
differentiation" evidence=ISS] [GO:0060517 "epithelial cell
proliferation involved in prostatic bud elongation" evidence=ISS]
[GO:0060784 "regulation of cell proliferation involved in tissue
homeostasis" evidence=ISS] [GO:0061138 "morphogenesis of a
branching epithelium" evidence=ISS] [GO:0072289 "metanephric
nephron tubule formation" evidence=ISS] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=ISS] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=ISS] [GO:0001894 "tissue homeostasis" evidence=ISS]
[GO:0002683 "negative regulation of immune system process"
evidence=ISS] [GO:0003170 "heart valve development" evidence=ISS]
[GO:0030279 "negative regulation of ossification" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0034236 "protein kinase A
catalytic subunit binding" evidence=IPI] [GO:0071347 "cellular
response to interleukin-1" evidence=IEP] [GO:0030850 "prostate
gland development" evidence=IEP] [GO:0001934 "positive regulation
of protein phosphorylation" evidence=ISS] [GO:0007173 "epidermal
growth factor receptor signaling pathway" evidence=ISS] [GO:0070371
"ERK1 and ERK2 cascade" evidence=ISS] [GO:0071260 "cellular
response to mechanical stimulus" evidence=ISS] [GO:0071364
"cellular response to epidermal growth factor stimulus"
evidence=ISS] [GO:0071504 "cellular response to heparin"
evidence=ISS] [GO:0003705 "RNA polymerase II distal enhancer
sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0001077 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=IDA] [GO:2000741 "positive regulation of mesenchymal stem
cell differentiation" evidence=IDA] [GO:0032332 "positive
regulation of chondrocyte differentiation" evidence=IMP;IDA]
[GO:0071560 "cellular response to transforming growth factor beta
stimulus" evidence=IDA] [GO:0061036 "positive regulation of
cartilage development" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043234 "protein complex" evidence=IDA] [GO:0006461 "protein
complex assembly" evidence=IDA] [GO:0001046 "core promoter
sequence-specific DNA binding" evidence=IDA] [GO:0007165 "signal
transduction" evidence=ISS] [GO:0072034 "renal vesicle induction"
evidence=ISS] [GO:0090184 "positive regulation of kidney
development" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:0035326 "enhancer binding" evidence=IDA] [GO:0019933
"cAMP-mediated signaling" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IMP;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IMP;IDA] [GO:0001501 "skeletal system
development" evidence=IMP] [GO:0003413 "chondrocyte differentiation
involved in endochondral bone morphogenesis" evidence=IMP]
[GO:0071300 "cellular response to retinoic acid" evidence=IEP]
[GO:0010564 "regulation of cell cycle process" evidence=IMP]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0043066 "negative regulation of
apoptotic process" evidence=ISS;IMP] [GO:0003415 "chondrocyte
hypertrophy" evidence=ISS] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=ISS] [GO:0004672
"protein kinase activity" evidence=ISS] [GO:2000020 "positive
regulation of male gonad development" evidence=IDA] [GO:0010634
"positive regulation of epithelial cell migration" evidence=IMP]
[GO:0001502 "cartilage condensation" evidence=ISS] [GO:0003179
"heart valve morphogenesis" evidence=ISS] [GO:0030916 "otic vesicle
formation" evidence=ISS] [GO:0051216 "cartilage development"
evidence=ISS] [GO:0060729 "intestinal epithelial structure
maintenance" evidence=ISS] [GO:0090103 "cochlea morphogenesis"
evidence=ISS] [GO:0070168 "negative regulation of biomineral tissue
development" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0001708 GO:GO:0007173
GO:GO:0045892 GO:GO:0043066 GO:GO:0006461 GO:GO:0030155
GO:GO:0071560 GO:GO:0019933 GO:GO:0070371 GO:GO:0071300
GO:GO:0030198 GO:GO:0014068 GO:GO:0007283 GO:GO:0003682
GO:GO:0003705 GO:GO:0001077 GO:GO:0006338 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0004672
GO:GO:0071504 GO:GO:0001942 EMBL:CH471099 GO:GO:0032332
GO:GO:0030279 GO:GO:0060009 GO:GO:0090090 GO:GO:0071260
GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
GO:GO:0031018 GO:GO:0043491 GO:GO:0014032 GO:GO:0001502
GO:GO:0045732 GO:GO:0001837 GO:GO:0050680 GO:GO:0001503
GO:GO:0001658 GO:GO:0071347 GO:GO:0001158 GO:GO:0030858
GO:GO:0048709 GO:GO:0010634 GO:GO:0016585 GO:GO:0006334
GO:GO:0003413 GO:GO:0030879 GO:GO:0050679 GO:GO:0002053
GO:GO:0001046 GO:GO:0030502 GO:GO:2000138 GO:GO:0061036
GO:GO:0003203 GO:GO:0032331 GO:GO:0045662 GO:GO:0060008
GO:GO:0030916 GO:GO:2000020 GO:GO:0046533 GO:GO:0060174
GO:GO:0030903 GO:GO:0090103 GO:GO:0010564 GO:GO:0019100
GO:GO:0003179 GO:GO:0070168 GO:GO:0060018 GO:GO:0035622
GO:GO:0072190 GO:GO:0072289 GO:GO:0072197 GO:GO:0003188
eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
InterPro:IPR022151 Pfam:PF12444 GO:GO:2000741 GO:GO:0072034
GO:GO:0060221 OrthoDB:EOG4TXBRZ GO:GO:0003415 GO:GO:0060517
GO:GO:0060729 GO:GO:0002683 GO:GO:0060784 CTD:6662 EMBL:Z46629
EMBL:S74506 EMBL:S74504 EMBL:S74505 EMBL:BT006875 EMBL:BC007951
EMBL:BC056420 IPI:IPI00009713 PIR:A55204 RefSeq:NP_000337.1
UniGene:Hs.647409 PDB:1S9M PDB:1SX9 PDB:4EUW PDBsum:1S9M
PDBsum:1SX9 PDBsum:4EUW ProteinModelPortal:P48436 SMR:P48436
IntAct:P48436 STRING:P48436 PhosphoSite:P48436 DMDM:1351096
PRIDE:P48436 DNASU:6662 Ensembl:ENST00000245479 GeneID:6662
KEGG:hsa:6662 UCSC:uc002jiw.3 GeneCards:GC17P070117 HGNC:HGNC:11204
HPA:CAB022456 HPA:HPA001758 MIM:114290 MIM:278850 MIM:608160
neXtProt:NX_P48436 Orphanet:140 Orphanet:2138 PharmGKB:PA36041
InParanoid:P48436 OMA:GAGHVWM PhylomeDB:P48436 GenomeRNAi:6662
NextBio:25973 ArrayExpress:P48436 Bgee:P48436 CleanEx:HS_SOX9
Genevestigator:P48436 GermOnline:ENSG00000125398 Uniprot:P48436
Length = 509
Score = 122 (48.0 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E++K P+V +AE
Sbjct: 101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 160 RLRVQHKKDHPDY 172
>UNIPROTKB|O18896 [details] [associations]
symbol:SOX9 "Transcription factor SOX-9" species:9823 "Sus
scrofa" [GO:0006468 "protein phosphorylation" evidence=ISS]
[GO:0061036 "positive regulation of cartilage development"
evidence=ISS] [GO:0002683 "negative regulation of immune system
process" evidence=ISS] [GO:0060729 "intestinal epithelial structure
maintenance" evidence=ISS] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISS]
[GO:0030916 "otic vesicle formation" evidence=ISS] [GO:0001708
"cell fate specification" evidence=ISS] [GO:2000741 "positive
regulation of mesenchymal stem cell differentiation" evidence=ISS]
[GO:2000020 "positive regulation of male gonad development"
evidence=ISS] [GO:0071560 "cellular response to transforming growth
factor beta stimulus" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0010564 "regulation of cell cycle process"
evidence=ISS] [GO:0008284 "positive regulation of cell
proliferation" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006334 "nucleosome assembly" evidence=ISS]
[GO:0071504 "cellular response to heparin" evidence=ISS]
[GO:0071364 "cellular response to epidermal growth factor stimulus"
evidence=ISS] [GO:0071260 "cellular response to mechanical
stimulus" evidence=ISS] [GO:0001934 "positive regulation of protein
phosphorylation" evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade"
evidence=ISS] [GO:0043491 "protein kinase B signaling cascade"
evidence=ISS] [GO:0007173 "epidermal growth factor receptor
signaling pathway" evidence=ISS] [GO:0010634 "positive regulation
of epithelial cell migration" evidence=ISS] [GO:0070168 "negative
regulation of biomineral tissue development" evidence=ISS]
[GO:0030279 "negative regulation of ossification" evidence=ISS]
[GO:0003170 "heart valve development" evidence=ISS] [GO:0001894
"tissue homeostasis" evidence=ISS] [GO:0001158 "enhancer
sequence-specific DNA binding" evidence=ISS] [GO:0003705 "RNA
polymerase II distal enhancer sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0061138
"morphogenesis of a branching epithelium" evidence=ISS] [GO:0060784
"regulation of cell proliferation involved in tissue homeostasis"
evidence=ISS] [GO:0060517 "epithelial cell proliferation involved
in prostatic bud elongation" evidence=ISS] [GO:0060221 "retinal rod
cell differentiation" evidence=ISS] [GO:0060008 "Sertoli cell
differentiation" evidence=ISS] [GO:0060041 "retina development in
camera-type eye" evidence=ISS] [GO:0072289 "metanephric nephron
tubule formation" evidence=ISS] [GO:0090090 "negative regulation of
canonical Wnt receptor signaling pathway" evidence=ISS] [GO:0090103
"cochlea morphogenesis" evidence=ISS] [GO:0051216 "cartilage
development" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0003415 "chondrocyte hypertrophy" evidence=ISS]
[GO:0050680 "negative regulation of epithelial cell proliferation"
evidence=ISS] [GO:0050679 "positive regulation of epithelial cell
proliferation" evidence=ISS] [GO:0046533 "negative regulation of
photoreceptor cell differentiation" evidence=ISS] [GO:0045662
"negative regulation of myoblast differentiation" evidence=ISS]
[GO:0042981 "regulation of apoptotic process" evidence=ISS]
[GO:0042127 "regulation of cell proliferation" evidence=ISS]
[GO:0035019 "somatic stem cell maintenance" evidence=ISS]
[GO:0032331 "negative regulation of chondrocyte differentiation"
evidence=ISS] [GO:0030858 "positive regulation of epithelial cell
differentiation" evidence=ISS] [GO:0019100 "male germ-line sex
determination" evidence=ISS] [GO:0007283 "spermatogenesis"
evidence=ISS] [GO:0003203 "endocardial cushion morphogenesis"
evidence=ISS] [GO:0003179 "heart valve morphogenesis" evidence=ISS]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=ISS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0001942 "hair follicle development" evidence=ISS]
[GO:0043234 "protein complex" evidence=ISS] [GO:0035326 "enhancer
binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0001046 "core
promoter sequence-specific DNA binding" evidence=ISS] [GO:0032332
"positive regulation of chondrocyte differentiation" evidence=ISS]
[GO:0001502 "cartilage condensation" evidence=ISS] [GO:0019933
"cAMP-mediated signaling" evidence=ISS] [GO:0008584 "male gonad
development" evidence=ISS] [GO:0006461 "protein complex assembly"
evidence=ISS] [GO:0003413 "chondrocyte differentiation involved in
endochondral bone morphogenesis" evidence=ISS] [GO:0001501
"skeletal system development" evidence=ISS] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0005634 "nucleus" evidence=ISS] [GO:0090190
"positive regulation of branching involved in ureteric bud
morphogenesis" evidence=ISS] [GO:0090184 "positive regulation of
kidney development" evidence=ISS] [GO:0072034 "renal vesicle
induction" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0007165 "signal
transduction" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
GO:GO:0006461 GO:GO:0071560 GO:GO:0019933 GO:GO:0070371
GO:GO:0014068 GO:GO:0007283 GO:GO:0003682 GO:GO:0003705
GO:GO:0001077 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504
GO:GO:0001942 GO:GO:0032332 GO:GO:0030279 GO:GO:0090090
GO:GO:0071260 GO:GO:0035019 GO:GO:0001934 GO:GO:0090190
GO:GO:0071364 GO:GO:0043491 GO:GO:0001502 GO:GO:0001837
GO:GO:0050680 GO:GO:0001158 GO:GO:0030858 GO:GO:0010634
GO:GO:0016585 GO:GO:0006334 GO:GO:0003413 GO:GO:0050679
GO:GO:0002053 GO:GO:0001046 GO:GO:0061036 GO:GO:0003203
GO:GO:0032331 GO:GO:0045662 GO:GO:0060008 GO:GO:0030916
GO:GO:2000020 GO:GO:0046533 GO:GO:0090103 GO:GO:0010564
GO:GO:0019100 GO:GO:0003179 GO:GO:0070168 GO:GO:0072289
eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
InterPro:IPR022151 Pfam:PF12444 GO:GO:2000741 GO:GO:0072034
GO:GO:0060221 OrthoDB:EOG4TXBRZ GO:GO:0003415 GO:GO:0060517
GO:GO:0060729 GO:GO:0002683 GO:GO:0060784 CTD:6662 EMBL:AF029696
RefSeq:NP_999008.1 UniGene:Ssc.16373 ProteinModelPortal:O18896
SMR:O18896 STRING:O18896 GeneID:396840 KEGG:ssc:396840
Uniprot:O18896
Length = 509
Score = 122 (48.0 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E++K P+V +AE
Sbjct: 101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 160 RLRVQHKKDHPDY 172
>UNIPROTKB|P61753 [details] [associations]
symbol:SOX9 "Transcription factor SOX-9" species:9544
"Macaca mulatta" [GO:0001046 "core promoter sequence-specific DNA
binding" evidence=ISS] [GO:0001077 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding transcription factor
activity involved in positive regulation of transcription"
evidence=ISS] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=ISS] [GO:0001501 "skeletal system development"
evidence=ISS] [GO:0001502 "cartilage condensation" evidence=ISS]
[GO:0001708 "cell fate specification" evidence=ISS] [GO:0001837
"epithelial to mesenchymal transition" evidence=ISS] [GO:0001894
"tissue homeostasis" evidence=ISS] [GO:0001934 "positive regulation
of protein phosphorylation" evidence=ISS] [GO:0001942 "hair
follicle development" evidence=ISS] [GO:0002053 "positive
regulation of mesenchymal cell proliferation" evidence=ISS]
[GO:0002683 "negative regulation of immune system process"
evidence=ISS] [GO:0003170 "heart valve development" evidence=ISS]
[GO:0003179 "heart valve morphogenesis" evidence=ISS] [GO:0003203
"endocardial cushion morphogenesis" evidence=ISS] [GO:0003413
"chondrocyte differentiation involved in endochondral bone
morphogenesis" evidence=ISS] [GO:0003415 "chondrocyte hypertrophy"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003705 "RNA polymerase II distal
enhancer sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006334
"nucleosome assembly" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0006461 "protein complex assembly"
evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
[GO:0007165 "signal transduction" evidence=ISS] [GO:0007173
"epidermal growth factor receptor signaling pathway" evidence=ISS]
[GO:0007283 "spermatogenesis" evidence=ISS] [GO:0008284 "positive
regulation of cell proliferation" evidence=ISS] [GO:0008584 "male
gonad development" evidence=ISS] [GO:0010564 "regulation of cell
cycle process" evidence=ISS] [GO:0010634 "positive regulation of
epithelial cell migration" evidence=ISS] [GO:0014068 "positive
regulation of phosphatidylinositol 3-kinase cascade" evidence=ISS]
[GO:0019100 "male germ-line sex determination" evidence=ISS]
[GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0030279
"negative regulation of ossification" evidence=ISS] [GO:0030858
"positive regulation of epithelial cell differentiation"
evidence=ISS] [GO:0030916 "otic vesicle formation" evidence=ISS]
[GO:0032331 "negative regulation of chondrocyte differentiation"
evidence=ISS] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=ISS] [GO:0035019 "somatic stem cell
maintenance" evidence=ISS] [GO:0035326 "enhancer binding"
evidence=ISS] [GO:0042127 "regulation of cell proliferation"
evidence=ISS] [GO:0042981 "regulation of apoptotic process"
evidence=ISS] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0043491 "protein kinase B signaling cascade" evidence=ISS]
[GO:0045662 "negative regulation of myoblast differentiation"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0046533 "negative regulation of photoreceptor cell
differentiation" evidence=ISS] [GO:0050679 "positive regulation of
epithelial cell proliferation" evidence=ISS] [GO:0050680 "negative
regulation of epithelial cell proliferation" evidence=ISS]
[GO:0051216 "cartilage development" evidence=ISS] [GO:0060008
"Sertoli cell differentiation" evidence=ISS] [GO:0060041 "retina
development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
rod cell differentiation" evidence=ISS] [GO:0060517 "epithelial
cell proliferation involved in prostatic bud elongation"
evidence=ISS] [GO:0060729 "intestinal epithelial structure
maintenance" evidence=ISS] [GO:0060784 "regulation of cell
proliferation involved in tissue homeostasis" evidence=ISS]
[GO:0061036 "positive regulation of cartilage development"
evidence=ISS] [GO:0061138 "morphogenesis of a branching epithelium"
evidence=ISS] [GO:0070168 "negative regulation of biomineral tissue
development" evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade"
evidence=ISS] [GO:0071260 "cellular response to mechanical
stimulus" evidence=ISS] [GO:0071364 "cellular response to epidermal
growth factor stimulus" evidence=ISS] [GO:0071504 "cellular
response to heparin" evidence=ISS] [GO:0071560 "cellular response
to transforming growth factor beta stimulus" evidence=ISS]
[GO:0072034 "renal vesicle induction" evidence=ISS] [GO:0072289
"metanephric nephron tubule formation" evidence=ISS] [GO:0090090
"negative regulation of canonical Wnt receptor signaling pathway"
evidence=ISS] [GO:0090103 "cochlea morphogenesis" evidence=ISS]
[GO:0090184 "positive regulation of kidney development"
evidence=ISS] [GO:0090190 "positive regulation of branching
involved in ureteric bud morphogenesis" evidence=ISS] [GO:2000020
"positive regulation of male gonad development" evidence=ISS]
[GO:2000741 "positive regulation of mesenchymal stem cell
differentiation" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
GO:GO:0006461 GO:GO:0071560 GO:GO:0019933 GO:GO:0070371
GO:GO:0014068 GO:GO:0007283 GO:GO:0003682 GO:GO:0003705
GO:GO:0001077 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504
GO:GO:0001942 GO:GO:0032332 GO:GO:0030279 GO:GO:0090090
GO:GO:0071260 GO:GO:0035019 GO:GO:0001934 GO:GO:0090190
GO:GO:0071364 GO:GO:0043491 GO:GO:0001502 GO:GO:0001837
GO:GO:0050680 GO:GO:0001158 GO:GO:0030858 GO:GO:0010634
GO:GO:0016585 GO:GO:0006334 GO:GO:0003413 GO:GO:0050679
GO:GO:0002053 GO:GO:0001046 GO:GO:0061036 GO:GO:0003203
GO:GO:0032331 GO:GO:0045662 GO:GO:0060008 GO:GO:0030916
GO:GO:2000020 GO:GO:0046533 GO:GO:0090103 GO:GO:0010564
GO:GO:0019100 GO:GO:0003179 GO:GO:0070168 GO:GO:0072289
eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
InterPro:IPR022151 Pfam:PF12444 GO:GO:2000741 GO:GO:0072034
GO:GO:0060221 OrthoDB:EOG4TXBRZ GO:GO:0003415 GO:GO:0060517
GO:GO:0060729 GO:GO:0002683 GO:GO:0060784 CTD:6662 EMBL:AF322900
RefSeq:NP_001028040.1 UniGene:Mmu.3543 ProteinModelPortal:P61753
SMR:P61753 STRING:P61753 PRIDE:P61753 GeneID:574208 KEGG:mcc:574208
InParanoid:P61753 NextBio:19987290 Uniprot:P61753
Length = 509
Score = 122 (48.0 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E++K P+V +AE
Sbjct: 101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 160 RLRVQHKKDHPDY 172
>UNIPROTKB|P61754 [details] [associations]
symbol:SOX9 "Transcription factor SOX-9" species:9600
"Pongo pygmaeus" [GO:0001046 "core promoter sequence-specific DNA
binding" evidence=ISS] [GO:0001077 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding transcription factor
activity involved in positive regulation of transcription"
evidence=ISS] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=ISS] [GO:0001501 "skeletal system development"
evidence=ISS] [GO:0001502 "cartilage condensation" evidence=ISS]
[GO:0001708 "cell fate specification" evidence=ISS] [GO:0001837
"epithelial to mesenchymal transition" evidence=ISS] [GO:0001894
"tissue homeostasis" evidence=ISS] [GO:0001934 "positive regulation
of protein phosphorylation" evidence=ISS] [GO:0001942 "hair
follicle development" evidence=ISS] [GO:0002053 "positive
regulation of mesenchymal cell proliferation" evidence=ISS]
[GO:0002683 "negative regulation of immune system process"
evidence=ISS] [GO:0003170 "heart valve development" evidence=ISS]
[GO:0003179 "heart valve morphogenesis" evidence=ISS] [GO:0003203
"endocardial cushion morphogenesis" evidence=ISS] [GO:0003413
"chondrocyte differentiation involved in endochondral bone
morphogenesis" evidence=ISS] [GO:0003415 "chondrocyte hypertrophy"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003705 "RNA polymerase II distal
enhancer sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006334
"nucleosome assembly" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0006461 "protein complex assembly"
evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
[GO:0007165 "signal transduction" evidence=ISS] [GO:0007173
"epidermal growth factor receptor signaling pathway" evidence=ISS]
[GO:0007283 "spermatogenesis" evidence=ISS] [GO:0008284 "positive
regulation of cell proliferation" evidence=ISS] [GO:0008584 "male
gonad development" evidence=ISS] [GO:0010564 "regulation of cell
cycle process" evidence=ISS] [GO:0010634 "positive regulation of
epithelial cell migration" evidence=ISS] [GO:0014068 "positive
regulation of phosphatidylinositol 3-kinase cascade" evidence=ISS]
[GO:0019100 "male germ-line sex determination" evidence=ISS]
[GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0030279
"negative regulation of ossification" evidence=ISS] [GO:0030858
"positive regulation of epithelial cell differentiation"
evidence=ISS] [GO:0030916 "otic vesicle formation" evidence=ISS]
[GO:0032331 "negative regulation of chondrocyte differentiation"
evidence=ISS] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=ISS] [GO:0035019 "somatic stem cell
maintenance" evidence=ISS] [GO:0035326 "enhancer binding"
evidence=ISS] [GO:0042127 "regulation of cell proliferation"
evidence=ISS] [GO:0042981 "regulation of apoptotic process"
evidence=ISS] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0043491 "protein kinase B signaling cascade" evidence=ISS]
[GO:0045662 "negative regulation of myoblast differentiation"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0046533 "negative regulation of photoreceptor cell
differentiation" evidence=ISS] [GO:0050679 "positive regulation of
epithelial cell proliferation" evidence=ISS] [GO:0050680 "negative
regulation of epithelial cell proliferation" evidence=ISS]
[GO:0051216 "cartilage development" evidence=ISS] [GO:0060008
"Sertoli cell differentiation" evidence=ISS] [GO:0060041 "retina
development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
rod cell differentiation" evidence=ISS] [GO:0060517 "epithelial
cell proliferation involved in prostatic bud elongation"
evidence=ISS] [GO:0060729 "intestinal epithelial structure
maintenance" evidence=ISS] [GO:0060784 "regulation of cell
proliferation involved in tissue homeostasis" evidence=ISS]
[GO:0061036 "positive regulation of cartilage development"
evidence=ISS] [GO:0061138 "morphogenesis of a branching epithelium"
evidence=ISS] [GO:0070168 "negative regulation of biomineral tissue
development" evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade"
evidence=ISS] [GO:0071260 "cellular response to mechanical
stimulus" evidence=ISS] [GO:0071364 "cellular response to epidermal
growth factor stimulus" evidence=ISS] [GO:0071504 "cellular
response to heparin" evidence=ISS] [GO:0071560 "cellular response
to transforming growth factor beta stimulus" evidence=ISS]
[GO:0072034 "renal vesicle induction" evidence=ISS] [GO:0072289
"metanephric nephron tubule formation" evidence=ISS] [GO:0090090
"negative regulation of canonical Wnt receptor signaling pathway"
evidence=ISS] [GO:0090103 "cochlea morphogenesis" evidence=ISS]
[GO:0090184 "positive regulation of kidney development"
evidence=ISS] [GO:0090190 "positive regulation of branching
involved in ureteric bud morphogenesis" evidence=ISS] [GO:2000020
"positive regulation of male gonad development" evidence=ISS]
[GO:2000741 "positive regulation of mesenchymal stem cell
differentiation" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
GO:GO:0006461 GO:GO:0071560 GO:GO:0019933 GO:GO:0070371
GO:GO:0014068 GO:GO:0007283 GO:GO:0003682 GO:GO:0003705
GO:GO:0001077 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504
GO:GO:0001942 GO:GO:0032332 GO:GO:0030279 GO:GO:0090090
GO:GO:0071260 GO:GO:0035019 GO:GO:0001934 GO:GO:0090190
GO:GO:0071364 GO:GO:0043491 GO:GO:0001502 GO:GO:0001837
GO:GO:0050680 GO:GO:0001158 GO:GO:0030858 GO:GO:0010634
GO:GO:0016585 GO:GO:0006334 GO:GO:0003413 GO:GO:0050679
GO:GO:0002053 GO:GO:0001046 GO:GO:0061036 GO:GO:0003203
GO:GO:0032331 GO:GO:0045662 GO:GO:0060008 GO:GO:0030916
GO:GO:2000020 GO:GO:0046533 GO:GO:0090103 GO:GO:0010564
GO:GO:0019100 GO:GO:0003179 GO:GO:0070168 GO:GO:0072289
eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061
InterPro:IPR022151 Pfam:PF12444 GO:GO:2000741 GO:GO:0072034
GO:GO:0060221 GO:GO:0003415 GO:GO:0060517 GO:GO:0060729
GO:GO:0002683 GO:GO:0060784 EMBL:AF322898 ProteinModelPortal:P61754
SMR:P61754 STRING:P61754 PRIDE:P61754 InParanoid:P61754
Uniprot:P61754
Length = 509
Score = 122 (48.0 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E++K P+V +AE
Sbjct: 101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 160 RLRVQHKKDHPDY 172
>UNIPROTKB|Q9BG91 [details] [associations]
symbol:SOX9 "Transcription factor SOX-9" species:9483
"Callithrix jacchus" [GO:0001046 "core promoter sequence-specific
DNA binding" evidence=ISS] [GO:0001077 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=ISS] [GO:0001158 "enhancer
sequence-specific DNA binding" evidence=ISS] [GO:0001501 "skeletal
system development" evidence=ISS] [GO:0001502 "cartilage
condensation" evidence=ISS] [GO:0001708 "cell fate specification"
evidence=ISS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0001894 "tissue homeostasis" evidence=ISS]
[GO:0001934 "positive regulation of protein phosphorylation"
evidence=ISS] [GO:0001942 "hair follicle development" evidence=ISS]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=ISS] [GO:0002683 "negative regulation of immune system
process" evidence=ISS] [GO:0003170 "heart valve development"
evidence=ISS] [GO:0003179 "heart valve morphogenesis" evidence=ISS]
[GO:0003203 "endocardial cushion morphogenesis" evidence=ISS]
[GO:0003413 "chondrocyte differentiation involved in endochondral
bone morphogenesis" evidence=ISS] [GO:0003415 "chondrocyte
hypertrophy" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003705 "RNA polymerase II distal enhancer
sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006334 "nucleosome
assembly" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006461 "protein complex assembly" evidence=ISS]
[GO:0006468 "protein phosphorylation" evidence=ISS] [GO:0007165
"signal transduction" evidence=ISS] [GO:0007173 "epidermal growth
factor receptor signaling pathway" evidence=ISS] [GO:0007283
"spermatogenesis" evidence=ISS] [GO:0008284 "positive regulation of
cell proliferation" evidence=ISS] [GO:0010564 "regulation of cell
cycle process" evidence=ISS] [GO:0010634 "positive regulation of
epithelial cell migration" evidence=ISS] [GO:0014068 "positive
regulation of phosphatidylinositol 3-kinase cascade" evidence=ISS]
[GO:0019100 "male germ-line sex determination" evidence=ISS]
[GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0030279
"negative regulation of ossification" evidence=ISS] [GO:0030858
"positive regulation of epithelial cell differentiation"
evidence=ISS] [GO:0030916 "otic vesicle formation" evidence=ISS]
[GO:0032331 "negative regulation of chondrocyte differentiation"
evidence=ISS] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=ISS] [GO:0035019 "somatic stem cell
maintenance" evidence=ISS] [GO:0035326 "enhancer binding"
evidence=ISS] [GO:0042127 "regulation of cell proliferation"
evidence=ISS] [GO:0042981 "regulation of apoptotic process"
evidence=ISS] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0043491 "protein kinase B signaling cascade" evidence=ISS]
[GO:0045662 "negative regulation of myoblast differentiation"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0046533 "negative regulation of photoreceptor cell
differentiation" evidence=ISS] [GO:0050679 "positive regulation of
epithelial cell proliferation" evidence=ISS] [GO:0050680 "negative
regulation of epithelial cell proliferation" evidence=ISS]
[GO:0051216 "cartilage development" evidence=ISS] [GO:0060008
"Sertoli cell differentiation" evidence=ISS] [GO:0060041 "retina
development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
rod cell differentiation" evidence=ISS] [GO:0060517 "epithelial
cell proliferation involved in prostatic bud elongation"
evidence=ISS] [GO:0060729 "intestinal epithelial structure
maintenance" evidence=ISS] [GO:0060784 "regulation of cell
proliferation involved in tissue homeostasis" evidence=ISS]
[GO:0061138 "morphogenesis of a branching epithelium" evidence=ISS]
[GO:0070168 "negative regulation of biomineral tissue development"
evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade" evidence=ISS]
[GO:0071260 "cellular response to mechanical stimulus"
evidence=ISS] [GO:0071364 "cellular response to epidermal growth
factor stimulus" evidence=ISS] [GO:0071504 "cellular response to
heparin" evidence=ISS] [GO:0072034 "renal vesicle induction"
evidence=ISS] [GO:0072289 "metanephric nephron tubule formation"
evidence=ISS] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=ISS] [GO:0090103 "cochlea
morphogenesis" evidence=ISS] [GO:0090184 "positive regulation of
kidney development" evidence=ISS] [GO:0090190 "positive regulation
of branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000020 "positive regulation of male gonad development"
evidence=ISS] [GO:2000741 "positive regulation of mesenchymal stem
cell differentiation" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
GO:GO:0006461 GO:GO:0019933 GO:GO:0070371 GO:GO:0014068
GO:GO:0007283 GO:GO:0003682 GO:GO:0003705 GO:GO:0001077
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504 GO:GO:0001942
GO:GO:0032332 GO:GO:0030279 GO:GO:0090090 GO:GO:0071260
GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
GO:GO:0043491 GO:GO:0001502 GO:GO:0001837 GO:GO:0050680
GO:GO:0001158 GO:GO:0030858 GO:GO:0010634 GO:GO:0016585
GO:GO:0006334 GO:GO:0003413 GO:GO:0050679 GO:GO:0002053
GO:GO:0001046 GO:GO:0003203 GO:GO:0032331 GO:GO:0045662
GO:GO:0060008 GO:GO:0030916 GO:GO:2000020 GO:GO:0046533
GO:GO:0090103 GO:GO:0010564 GO:GO:0019100 GO:GO:0003179
GO:GO:0070168 GO:GO:0072289 HOVERGEN:HBG002061 InterPro:IPR022151
Pfam:PF12444 GO:GO:2000741 GO:GO:0072034 GO:GO:0060221
EMBL:AF322899 ProteinModelPortal:Q9BG91 SMR:Q9BG91
OrthoDB:EOG4TXBRZ GO:GO:0003415 GO:GO:0060517 GO:GO:0060729
GO:GO:0002683 GO:GO:0060784 Uniprot:Q9BG91
Length = 509
Score = 122 (48.0 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E++K P+V +AE
Sbjct: 101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 160 RLRVQHKKDHPDY 172
>UNIPROTKB|F1RV30 [details] [associations]
symbol:SOX9 "Transcription factor SOX-9" species:9823 "Sus
scrofa" [GO:0035622 "intrahepatic bile duct development"
evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
evidence=IEA] [GO:0034236 "protein kinase A catalytic subunit
binding" evidence=IEA] [GO:0032332 "positive regulation of
chondrocyte differentiation" evidence=IEA] [GO:0032331 "negative
regulation of chondrocyte differentiation" evidence=IEA]
[GO:0031018 "endocrine pancreas development" evidence=IEA]
[GO:0030916 "otic vesicle formation" evidence=IEA] [GO:0030903
"notochord development" evidence=IEA] [GO:0030879 "mammary gland
development" evidence=IEA] [GO:0030858 "positive regulation of
epithelial cell differentiation" evidence=IEA] [GO:0030502
"negative regulation of bone mineralization" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030155 "regulation of cell adhesion" evidence=IEA] [GO:0019933
"cAMP-mediated signaling" evidence=IEA] [GO:0019100 "male germ-line
sex determination" evidence=IEA] [GO:0014068 "positive regulation
of phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0014032
"neural crest cell development" evidence=IEA] [GO:0010634 "positive
regulation of epithelial cell migration" evidence=IEA] [GO:0010564
"regulation of cell cycle process" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007173 "epidermal growth factor receptor
signaling pathway" evidence=IEA] [GO:0006461 "protein complex
assembly" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA] [GO:0003705
"RNA polymerase II distal enhancer sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003415 "chondrocyte hypertrophy"
evidence=IEA] [GO:0003413 "chondrocyte differentiation involved in
endochondral bone morphogenesis" evidence=IEA] [GO:0003203
"endocardial cushion morphogenesis" evidence=IEA] [GO:0003188
"heart valve formation" evidence=IEA] [GO:0002683 "negative
regulation of immune system process" evidence=IEA] [GO:0002053
"positive regulation of mesenchymal cell proliferation"
evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
[GO:0001934 "positive regulation of protein phosphorylation"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IEA] [GO:0001708 "cell fate specification" evidence=IEA]
[GO:0001658 "branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:0001503 "ossification" evidence=IEA] [GO:0001502
"cartilage condensation" evidence=IEA] [GO:0001158 "enhancer
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0001046 "core
promoter sequence-specific DNA binding" evidence=IEA] [GO:2000741
"positive regulation of mesenchymal stem cell differentiation"
evidence=IEA] [GO:2000138 "positive regulation of cell
proliferation involved in heart morphogenesis" evidence=IEA]
[GO:2000020 "positive regulation of male gonad development"
evidence=IEA] [GO:0090190 "positive regulation of branching
involved in ureteric bud morphogenesis" evidence=IEA] [GO:0090103
"cochlea morphogenesis" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0072289 "metanephric nephron tubule formation"
evidence=IEA] [GO:0072197 "ureter morphogenesis" evidence=IEA]
[GO:0072190 "ureter urothelium development" evidence=IEA]
[GO:0072034 "renal vesicle induction" evidence=IEA] [GO:0071560
"cellular response to transforming growth factor beta stimulus"
evidence=IEA] [GO:0071504 "cellular response to heparin"
evidence=IEA] [GO:0071364 "cellular response to epidermal growth
factor stimulus" evidence=IEA] [GO:0071347 "cellular response to
interleukin-1" evidence=IEA] [GO:0071300 "cellular response to
retinoic acid" evidence=IEA] [GO:0071260 "cellular response to
mechanical stimulus" evidence=IEA] [GO:0070371 "ERK1 and ERK2
cascade" evidence=IEA] [GO:0061036 "positive regulation of
cartilage development" evidence=IEA] [GO:0060784 "regulation of
cell proliferation involved in tissue homeostasis" evidence=IEA]
[GO:0060729 "intestinal epithelial structure maintenance"
evidence=IEA] [GO:0060517 "epithelial cell proliferation involved
in prostatic bud elongation" evidence=IEA] [GO:0060221 "retinal rod
cell differentiation" evidence=IEA] [GO:0060174 "limb bud
formation" evidence=IEA] [GO:0060018 "astrocyte fate commitment"
evidence=IEA] [GO:0060009 "Sertoli cell development" evidence=IEA]
[GO:0050680 "negative regulation of epithelial cell proliferation"
evidence=IEA] [GO:0050679 "positive regulation of epithelial cell
proliferation" evidence=IEA] [GO:0048709 "oligodendrocyte
differentiation" evidence=IEA] [GO:0046533 "negative regulation of
photoreceptor cell differentiation" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045732 "positive regulation of protein catabolic process"
evidence=IEA] [GO:0045662 "negative regulation of myoblast
differentiation" evidence=IEA] [GO:0043491 "protein kinase B
signaling cascade" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
GO:GO:0006461 GO:GO:0030155 GO:GO:0071560 GO:GO:0019933
GO:GO:0070371 GO:GO:0071300 GO:GO:0030198 GO:GO:0014068
GO:GO:0007283 GO:GO:0003682 GO:GO:0003705 GO:GO:0001077
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504 GO:GO:0001942
GO:GO:0032332 GO:GO:0060009 GO:GO:0090090 GO:GO:0071260
GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
GO:GO:0031018 GO:GO:0043491 GO:GO:0014032 GO:GO:0001502
GO:GO:0045732 GO:GO:0001837 GO:GO:0050680 GO:GO:0001503
GO:GO:0001658 GO:GO:0071347 GO:GO:0001158 GO:GO:0030858
GO:GO:0048709 GO:GO:0010634 GO:GO:0016585 GO:GO:0006334
GO:GO:0003413 GO:GO:0030879 GO:GO:0050679 GO:GO:0002053
GO:GO:0001046 GO:GO:0030502 GO:GO:2000138 GO:GO:0061036
GO:GO:0003203 GO:GO:0032331 GO:GO:0045662 GO:GO:0030916
GO:GO:2000020 GO:GO:0046533 GO:GO:0060174 GO:GO:0030903
GO:GO:0090103 GO:GO:0010564 GO:GO:0019100 GO:GO:0060018
GO:GO:0035622 GO:GO:0072190 GO:GO:0072289 GO:GO:0072197
GO:GO:0003188 GeneTree:ENSGT00670000097649 InterPro:IPR022151
Pfam:PF12444 GO:GO:2000741 GO:GO:0072034 GO:GO:0060221
GO:GO:0003415 GO:GO:0060517 GO:GO:0060729 GO:GO:0002683
GO:GO:0060784 OMA:GAGHVWM EMBL:CU640384 Ensembl:ENSSSCT00000018780
ArrayExpress:F1RV30 Uniprot:F1RV30
Length = 511
Score = 122 (48.0 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E++K P+V +AE
Sbjct: 101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 160 RLRVQHKKDHPDY 172
>UNIPROTKB|D4A535 [details] [associations]
symbol:D4A535 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00567139 Ensembl:ENSRNOT00000049646 Uniprot:D4A535
Length = 204
Score = 114 (45.2 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K K P + F+F E+ + K +HP S+ V K GE W + + DK PY +A K K
Sbjct: 88 KFKEPIAPSFLFCSEYCPKIKDEHP-GLSIGDVTKKLGETWSNTAVNDKQPYEKEAAKLK 146
Query: 97 VEYEKDMKNYNRRQAEGTKP 116
+ EKD+ Y +A+G KP
Sbjct: 147 EKCEKDIAAY---RAKG-KP 162
Score = 106 (42.4 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS-EADKAPYVAK 91
DP KP+ ++ F++ RE++KK H + + + K E+WK+MS + ++ +
Sbjct: 5 DPKKPRGKMLSYAFFVQTCREEHKKQHSDASVNFSEFSKKCSERWKTMSAKENRGIFEDM 64
Query: 92 AEKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 TKAGKASYEREMKTY 79
>ZFIN|ZDB-GENE-051113-268 [details] [associations]
symbol:sox14 "SRY-box containing gene 14"
species:7955 "Danio rerio" [GO:0021854 "hypothalamus development"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 ZFIN:ZDB-GENE-051113-268 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0021854
GeneTree:ENSGT00690000101940 HSSP:P48431 CTD:8403 eggNOG:NOG302715
HOGENOM:HOG000231647 KO:K09267 OrthoDB:EOG47D9H0 InterPro:IPR022097
Pfam:PF12336 EMBL:BC108033 IPI:IPI00511312 RefSeq:NP_001032769.1
UniGene:Dr.52424 ProteinModelPortal:Q32PP9 SMR:Q32PP9 STRING:Q32PP9
Ensembl:ENSDART00000104532 GeneID:557661 KEGG:dre:557661
InParanoid:Q32PP9 OMA:LGCPSQH NextBio:20882094 Bgee:Q32PP9
Uniprot:Q32PP9
Length = 238
Score = 116 (45.9 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 22/71 (30%), Positives = 44/71 (61%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP +AF V+ R + +++PK + + + K G +WK +SE++K PY+ +A++ + +
Sbjct: 9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSESEKRPYIDEAKRLRAQ 67
Query: 99 YEKDMKNYNRR 109
+ K+ +Y R
Sbjct: 68 HMKEHPDYKYR 78
>UNIPROTKB|Q7YRJ7 [details] [associations]
symbol:SOX9 "Transcription factor SOX-9" species:9615
"Canis lupus familiaris" [GO:0006468 "protein phosphorylation"
evidence=ISS] [GO:0010564 "regulation of cell cycle process"
evidence=ISS] [GO:0007173 "epidermal growth factor receptor
signaling pathway" evidence=ISS] [GO:0003170 "heart valve
development" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0060784 "regulation of cell proliferation involved in tissue
homeostasis" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0045662 "negative regulation of myoblast
differentiation" evidence=ISS] [GO:0032331 "negative regulation of
chondrocyte differentiation" evidence=ISS] [GO:0007283
"spermatogenesis" evidence=ISS] [GO:0002053 "positive regulation of
mesenchymal cell proliferation" evidence=ISS] [GO:0003413
"chondrocyte differentiation involved in endochondral bone
morphogenesis" evidence=ISS] [GO:2000741 "positive regulation of
mesenchymal stem cell differentiation" evidence=ISS] [GO:2000020
"positive regulation of male gonad development" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0006334 "nucleosome
assembly" evidence=ISS] [GO:0071504 "cellular response to heparin"
evidence=ISS] [GO:0071364 "cellular response to epidermal growth
factor stimulus" evidence=ISS] [GO:0071260 "cellular response to
mechanical stimulus" evidence=ISS] [GO:0070371 "ERK1 and ERK2
cascade" evidence=ISS] [GO:0001934 "positive regulation of protein
phosphorylation" evidence=ISS] [GO:0043491 "protein kinase B
signaling cascade" evidence=ISS] [GO:0010634 "positive regulation
of epithelial cell migration" evidence=ISS] [GO:0070168 "negative
regulation of biomineral tissue development" evidence=ISS]
[GO:0030279 "negative regulation of ossification" evidence=ISS]
[GO:0002683 "negative regulation of immune system process"
evidence=ISS] [GO:0001894 "tissue homeostasis" evidence=ISS]
[GO:0001158 "enhancer sequence-specific DNA binding" evidence=ISS]
[GO:0003705 "RNA polymerase II distal enhancer sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0061138 "morphogenesis of a branching epithelium" evidence=ISS]
[GO:0060729 "intestinal epithelial structure maintenance"
evidence=ISS] [GO:0060517 "epithelial cell proliferation involved
in prostatic bud elongation" evidence=ISS] [GO:0060221 "retinal rod
cell differentiation" evidence=ISS] [GO:0060008 "Sertoli cell
differentiation" evidence=ISS] [GO:0060041 "retina development in
camera-type eye" evidence=ISS] [GO:0072289 "metanephric nephron
tubule formation" evidence=ISS] [GO:0090090 "negative regulation of
canonical Wnt receptor signaling pathway" evidence=ISS] [GO:0090103
"cochlea morphogenesis" evidence=ISS] [GO:0051216 "cartilage
development" evidence=ISS] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=ISS] [GO:0003415
"chondrocyte hypertrophy" evidence=ISS] [GO:0050680 "negative
regulation of epithelial cell proliferation" evidence=ISS]
[GO:0050679 "positive regulation of epithelial cell proliferation"
evidence=ISS] [GO:0046533 "negative regulation of photoreceptor
cell differentiation" evidence=ISS] [GO:0043066 "negative
regulation of apoptotic process" evidence=ISS] [GO:0042981
"regulation of apoptotic process" evidence=ISS] [GO:0042127
"regulation of cell proliferation" evidence=ISS] [GO:0035019
"somatic stem cell maintenance" evidence=ISS] [GO:0030916 "otic
vesicle formation" evidence=ISS] [GO:0030858 "positive regulation
of epithelial cell differentiation" evidence=ISS] [GO:0019100 "male
germ-line sex determination" evidence=ISS] [GO:0008284 "positive
regulation of cell proliferation" evidence=ISS] [GO:0003203
"endocardial cushion morphogenesis" evidence=ISS] [GO:0003179
"heart valve morphogenesis" evidence=ISS] [GO:0001708 "cell fate
specification" evidence=ISS] [GO:0001837 "epithelial to mesenchymal
transition" evidence=ISS] [GO:0001942 "hair follicle development"
evidence=ISS] [GO:0001502 "cartilage condensation" evidence=ISS]
[GO:0043234 "protein complex" evidence=ISS] [GO:0001046 "core
promoter sequence-specific DNA binding" evidence=ISS] [GO:0032332
"positive regulation of chondrocyte differentiation" evidence=ISS]
[GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0006461
"protein complex assembly" evidence=ISS] [GO:0001501 "skeletal
system development" evidence=ISS] [GO:0035326 "enhancer binding"
evidence=ISS] [GO:0001077 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=ISS] [GO:0090184 "positive regulation of kidney
development" evidence=ISS] [GO:0072034 "renal vesicle induction"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0007165 "signal transduction"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0001708
GO:GO:0007173 GO:GO:0045892 GO:GO:0043066 GO:GO:0006461
GO:GO:0019933 GO:GO:0070371 GO:GO:0014068 GO:GO:0007283
GO:GO:0003682 GO:GO:0003705 GO:GO:0001077 GO:GO:0006338
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0004672 GO:GO:0071504 GO:GO:0001942 GO:GO:0032332
GO:GO:0030279 GO:GO:0090090 GO:GO:0071260 GO:GO:0035019
GO:GO:0001934 GO:GO:0090190 GO:GO:0071364 GO:GO:0043491
GO:GO:0001502 GO:GO:0001837 GO:GO:0050680 GO:GO:0001158
GO:GO:0030858 GO:GO:0010634 GO:GO:0016585 GO:GO:0006334
GO:GO:0003413 GO:GO:0050679 GO:GO:0002053 GO:GO:0001046
GO:GO:0003203 GO:GO:0032331 GO:GO:0045662 GO:GO:0060008
GO:GO:0030916 GO:GO:2000020 GO:GO:0046533 GO:GO:0090103
GO:GO:0010564 GO:GO:0019100 GO:GO:0003179 GO:GO:0070168
GO:GO:0072289 eggNOG:NOG295709 HOGENOM:HOG000108876
HOVERGEN:HBG002061 KO:K09270 InterPro:IPR022151 Pfam:PF12444
GO:GO:2000741 GO:GO:0072034 GO:GO:0060221 OrthoDB:EOG4TXBRZ
GO:GO:0003415 GO:GO:0060517 GO:GO:0060729 GO:GO:0002683
GO:GO:0060784 EMBL:AY237827 RefSeq:NP_001002978.1 UniGene:Cfa.175
ProteinModelPortal:Q7YRJ7 SMR:Q7YRJ7 STRING:Q7YRJ7 GeneID:403464
KEGG:cfa:403464 CTD:6662 NextBio:20816981 Uniprot:Q7YRJ7
Length = 513
Score = 122 (48.0 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E++K P+V +AE
Sbjct: 101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 160 RLRVQHKKDHPDY 172
>MGI|MGI:103559 [details] [associations]
symbol:Sox18 "SRY-box containing gene 18" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=ISO] [GO:0001077 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=ISO]
[GO:0001525 "angiogenesis" evidence=IGI] [GO:0001568 "blood vessel
development" evidence=IMP] [GO:0001570 "vasculogenesis"
evidence=IGI] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
[GO:0001944 "vasculature development" evidence=IMP] [GO:0001945
"lymph vessel development" evidence=IMP] [GO:0001946
"lymphangiogenesis" evidence=ISO;IMP] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IC;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0007507 "heart development" evidence=IMP]
[GO:0022405 "hair cycle process" evidence=ISO] [GO:0035050
"embryonic heart tube development" evidence=IGI] [GO:0042789 "mRNA
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=ISO;IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0048469 "cell maturation"
evidence=IDA] [GO:0048866 "stem cell fate specification"
evidence=IDA] [GO:0060214 "endocardium formation" evidence=IGI]
[GO:0060836 "lymphatic endothelial cell differentiation"
evidence=IMP] [GO:0060956 "endocardial cell differentiation"
evidence=IGI] [GO:0061028 "establishment of endothelial barrier"
evidence=ISO] [GO:0072091 "regulation of stem cell proliferation"
evidence=IDA] InterPro:IPR009071 MGI:MGI:103559 Pfam:PF00505
GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 GO:GO:0043565
GO:GO:0001701 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
GO:GO:0001525 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0001942 GO:GO:0001946
GO:GO:0060836 GO:GO:0043534 GO:GO:0001570 GO:GO:0048469
GO:GO:0035050 GO:GO:0072091 GO:GO:0060956 GO:GO:0060214
GO:GO:0061028 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
GeneTree:ENSGT00670000097649 KO:K09270 HOGENOM:HOG000069999
HOVERGEN:HBG000517 GO:GO:0048866 CTD:54345 eggNOG:NOG252325
OMA:YLNCSRT OrthoDB:EOG4KSPKP EMBL:L35032 EMBL:AF288518
EMBL:BC006612 EMBL:L29086 IPI:IPI00377924 RefSeq:NP_033262.2
UniGene:Mm.264904 ProteinModelPortal:P43680 SMR:P43680
STRING:P43680 PhosphoSite:P43680 PRIDE:P43680
Ensembl:ENSMUST00000054491 GeneID:20672 KEGG:mmu:20672
InParanoid:P43680 NextBio:299155 Bgee:P43680 CleanEx:MM_SOX18
Genevestigator:P43680 GermOnline:ENSMUSG00000046470 Uniprot:P43680
Length = 377
Score = 120 (47.3 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D + +RP +AF V+ ++ R++ + +P + A + K G+ WK ++ A+K P+V +AE
Sbjct: 75 DELRIRRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGKAWKELNTAEKRPFVEEAE 133
Query: 94 KRKVEYEKDMKNYNRR 109
+ +V++ +D NY R
Sbjct: 134 RLRVQHLRDHPNYKYR 149
>RGD|1311718 [details] [associations]
symbol:Sox18 "SRY (sex determining region Y)-box 18"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000978 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding" evidence=ISO] [GO:0001077 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding transcription factor
activity involved in positive regulation of transcription"
evidence=ISO] [GO:0001525 "angiogenesis" evidence=IEA;ISO]
[GO:0001568 "blood vessel development" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0001942 "hair follicle
development" evidence=IEA;ISO] [GO:0001944 "vasculature
development" evidence=ISO] [GO:0001945 "lymph vessel development"
evidence=ISO] [GO:0001946 "lymphangiogenesis" evidence=IEA;ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0007507 "heart development"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0022405 "hair cycle process" evidence=ISO] [GO:0035050
"embryonic heart tube development" evidence=IEA;ISO] [GO:0042789
"mRNA transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0043534 "blood vessel endothelial cell migration"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA;ISO] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA;ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0048469 "cell
maturation" evidence=IEA;ISO] [GO:0048866 "stem cell fate
specification" evidence=IEA;ISO] [GO:0060214 "endocardium
formation" evidence=IEA;ISO] [GO:0060836 "lymphatic endothelial
cell differentiation" evidence=IEA;ISO] [GO:0060956 "endocardial
cell differentiation" evidence=IEA;ISO] [GO:0061028 "establishment
of endothelial barrier" evidence=IEA;ISO] [GO:0072091 "regulation
of stem cell proliferation" evidence=IEA;ISO] InterPro:IPR009071
Pfam:PF00505 RGD:1311718 GO:GO:0005634 GO:GO:0045892 GO:GO:0043565
GO:GO:0001701 GO:GO:0045944 GO:GO:0003700 GO:GO:0001525
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0001942 GO:GO:0001946 GO:GO:0060836
GO:GO:0043534 GO:GO:0001570 GO:GO:0048469 GO:GO:0035050
GO:GO:0072091 GO:GO:0060956 GO:GO:0060214 GO:GO:0061028
EMBL:CH474066 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
GeneTree:ENSGT00670000097649 KO:K09270 HOGENOM:HOG000069999
HOVERGEN:HBG000517 GO:GO:0048866 CTD:54345 eggNOG:NOG252325
OMA:YLNCSRT OrthoDB:EOG4KSPKP EMBL:BC097973 IPI:IPI00211524
RefSeq:NP_001019952.1 UniGene:Rn.22446 SMR:Q4V7E4
Ensembl:ENSRNOT00000021790 GeneID:311723 KEGG:rno:311723
UCSC:RGD:1311718 InParanoid:Q4V7E4 NextBio:664090
Genevestigator:Q4V7E4 Uniprot:Q4V7E4
Length = 377
Score = 120 (47.3 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D + +RP +AF V+ ++ R++ + +P + A + K G+ WK ++ A+K P+V +AE
Sbjct: 75 DELRIRRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGKAWKELNTAEKRPFVEEAE 133
Query: 94 KRKVEYEKDMKNYNRR 109
+ +V++ +D NY R
Sbjct: 134 RLRVQHLRDHPNYKYR 149
>UNIPROTKB|O00570 [details] [associations]
symbol:SOX1 "Transcription factor SOX-1" species:9606 "Homo
sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0002089 "lens
morphogenesis in camera-type eye" evidence=IEA] [GO:0021521
"ventral spinal cord interneuron specification" evidence=IEA]
[GO:0021884 "forebrain neuron development" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0003677 "DNA binding"
evidence=NAS] [GO:0006325 "chromatin organization" evidence=NAS]
[GO:0001046 "core promoter sequence-specific DNA binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:CH471085 GO:GO:0006325 GO:GO:0001046 eggNOG:NOG321816
HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 OMA:MHRYDMT CTD:6656 EMBL:Y13436 EMBL:AL138691
IPI:IPI00012162 RefSeq:NP_005977.2 UniGene:Hs.202526
ProteinModelPortal:O00570 SMR:O00570 IntAct:O00570 STRING:O00570
PhosphoSite:O00570 PRIDE:O00570 Ensembl:ENST00000330949 GeneID:6656
KEGG:hsa:6656 UCSC:uc001vsb.1 GeneCards:GC13P112721 HGNC:HGNC:11189
MIM:602148 neXtProt:NX_O00570 PharmGKB:PA36026 InParanoid:O00570
OrthoDB:EOG4DFPQ1 PhylomeDB:O00570 GenomeRNAi:6656 NextBio:25947
Bgee:O00570 CleanEx:HS_SOX1 Genevestigator:O00570
GermOnline:ENSG00000182968 Uniprot:O00570
Length = 391
Score = 120 (47.3 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++ KRP +AF V+ R + +++PK + + + K G +WK MSEA+K P++ +A++
Sbjct: 49 DRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRL 107
Query: 96 KVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 108 RALHMKEHPDYKYRPRRKTK 127
>UNIPROTKB|Q2PG84 [details] [associations]
symbol:sox1 "Transcription factor Sox-1" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0007399
"nervous system development" evidence=IMP] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0051091
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 KO:K09267 InterPro:IPR022097
Pfam:PF12336 CTD:6656 EMBL:AB219572 EMBL:EF672727 EMBL:EF192051
EMBL:BC169643 RefSeq:NP_001089143.1 UniGene:Xl.55964
ProteinModelPortal:Q2PG84 SMR:Q2PG84 GeneID:734174 KEGG:xla:734174
Xenbase:XB-GENE-1018276 Uniprot:Q2PG84
Length = 393
Score = 120 (47.3 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++ KRP +AF V+ R + +++PK + + + K G +WK MSEA+K P++ +A++
Sbjct: 32 DRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRL 90
Query: 96 KVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 91 RALHMKEHPDYKYRPRRKTK 110
>ZFIN|ZDB-GENE-001103-1 [details] [associations]
symbol:sox9a "SRY-box containing gene 9a"
species:7955 "Danio rerio" [GO:0048839 "inner ear development"
evidence=IGI;IMP] [GO:0033339 "pectoral fin development"
evidence=IMP] [GO:0051216 "cartilage development" evidence=IMP]
[GO:0048708 "astrocyte differentiation" evidence=IMP] [GO:0048709
"oligodendrocyte differentiation" evidence=IMP] [GO:0043049 "otic
placode formation" evidence=IGI] [GO:0035118 "embryonic pectoral
fin morphogenesis" evidence=IMP] [GO:0030916 "otic vesicle
formation" evidence=IGI] [GO:0060536 "cartilage morphogenesis"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-001103-1
GO:GO:0005737 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0048709 GO:GO:0035118 GO:GO:0043049
GO:GO:0060536 GO:GO:0048708 GeneTree:ENSGT00670000097649
HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
InterPro:IPR022151 Pfam:PF12444 HSSP:P48432 OMA:GAGHVWM
EMBL:CU074420 EMBL:AF277096 EMBL:AY090034 EMBL:AY090035
IPI:IPI00507610 RefSeq:NP_571718.1 UniGene:Dr.80814 SMR:Q9DFH2
STRING:Q9DFH2 Ensembl:ENSDART00000005676 GeneID:60641
KEGG:dre:60641 CTD:60641 InParanoid:Q9DFH2 NextBio:20892427
Uniprot:Q9DFH2
Length = 462
Score = 121 (47.7 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E +K P+V +AE
Sbjct: 103 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNEVEKRPFVEEAE 161
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 162 RLRVQHKKDHPDY 174
>UNIPROTKB|A2TED3 [details] [associations]
symbol:sox1 "Transcription factor Sox-1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0007399 "nervous system development" evidence=ISS] [GO:0051091
"positive regulation of sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007399
GO:GO:0051091 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 eggNOG:NOG321816
HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
CTD:6656 EMBL:EF192052 EMBL:BC121846 EMBL:BC159121
RefSeq:NP_001074465.1 UniGene:Str.35422 ProteinModelPortal:A2TED3
SMR:A2TED3 STRING:A2TED3 GeneID:779569 KEGG:xtr:779569
Xenbase:XB-GENE-1018269 Uniprot:A2TED3
Length = 401
Score = 120 (47.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++ KRP +AF V+ R + +++PK + + + K G +WK MSEA+K P++ +A++
Sbjct: 35 DRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRL 93
Query: 96 KVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 94 RALHMKEHPDYKYRPRRKTK 113
>UNIPROTKB|Q6DFF5 [details] [associations]
symbol:sox9-b "Transcription factor Sox-9-B" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0014029 "neural crest formation"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0043049 "otic placode formation" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0051216 "cartilage
development" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0006351 GO:GO:0019899 GO:GO:0007506 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051216
GO:GO:0043049 GO:GO:0014029 KO:K09270 InterPro:IPR022151
Pfam:PF12444 HSSP:P48432 EMBL:AB439583 EMBL:BC076783
RefSeq:NP_001087942.1 UniGene:Xl.28992 ProteinModelPortal:Q6DFF5
SMR:Q6DFF5 GeneID:494585 KEGG:xla:494585 CTD:494585
Xenbase:XB-GENE-1034775 Uniprot:Q6DFF5
Length = 476
Score = 121 (47.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E +K P+V +AE
Sbjct: 101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNEGEKRPFVEEAE 159
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 160 RLRVQHKKDHPDY 172
>UNIPROTKB|B7ZR65 [details] [associations]
symbol:sox9-a "Transcription factor Sox-9-A" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0014029 "neural crest formation" evidence=IMP]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0043049 "otic
placode formation" evidence=IMP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0051216 "cartilage development"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0007506 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0051216 GO:GO:0043049 GO:GO:0014029
InterPro:IPR022151 Pfam:PF12444 EMBL:AY035397 EMBL:BC170058
EMBL:BC170060 RefSeq:NP_001084276.1 UniGene:Xl.1690 GeneID:399405
KEGG:xla:399405 CTD:399405 Xenbase:XB-GENE-6253910 Uniprot:B7ZR65
Length = 477
Score = 121 (47.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E +K P+V +AE
Sbjct: 101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNEGEKRPFVEEAE 159
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 160 RLRVQHKKDHPDY 172
>UNIPROTKB|Q9BG89 [details] [associations]
symbol:SOX9 "Transcription factor SOX-9" species:9598 "Pan
troglodytes" [GO:0001046 "core promoter sequence-specific DNA
binding" evidence=ISS] [GO:0001077 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding transcription factor
activity involved in positive regulation of transcription"
evidence=ISS] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=ISS] [GO:0001501 "skeletal system development"
evidence=ISS] [GO:0001502 "cartilage condensation" evidence=ISS]
[GO:0001708 "cell fate specification" evidence=ISS] [GO:0001837
"epithelial to mesenchymal transition" evidence=ISS] [GO:0001894
"tissue homeostasis" evidence=ISS] [GO:0001934 "positive regulation
of protein phosphorylation" evidence=ISS] [GO:0001942 "hair
follicle development" evidence=ISS] [GO:0002053 "positive
regulation of mesenchymal cell proliferation" evidence=ISS]
[GO:0002683 "negative regulation of immune system process"
evidence=ISS] [GO:0003170 "heart valve development" evidence=ISS]
[GO:0003179 "heart valve morphogenesis" evidence=ISS] [GO:0003203
"endocardial cushion morphogenesis" evidence=ISS] [GO:0003413
"chondrocyte differentiation involved in endochondral bone
morphogenesis" evidence=ISS] [GO:0003415 "chondrocyte hypertrophy"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003705 "RNA polymerase II distal enhancer sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0004672 "protein kinase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0006334 "nucleosome assembly"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006461 "protein complex assembly" evidence=ISS] [GO:0006468
"protein phosphorylation" evidence=ISS] [GO:0007165 "signal
transduction" evidence=ISS] [GO:0007173 "epidermal growth factor
receptor signaling pathway" evidence=ISS] [GO:0007283
"spermatogenesis" evidence=ISS] [GO:0008284 "positive regulation of
cell proliferation" evidence=ISS] [GO:0010564 "regulation of cell
cycle process" evidence=ISS] [GO:0010634 "positive regulation of
epithelial cell migration" evidence=ISS] [GO:0014068 "positive
regulation of phosphatidylinositol 3-kinase cascade" evidence=ISS]
[GO:0019100 "male germ-line sex determination" evidence=ISS]
[GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0030279
"negative regulation of ossification" evidence=ISS] [GO:0030858
"positive regulation of epithelial cell differentiation"
evidence=ISS] [GO:0030916 "otic vesicle formation" evidence=ISS]
[GO:0032331 "negative regulation of chondrocyte differentiation"
evidence=ISS] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=ISS] [GO:0035019 "somatic stem cell
maintenance" evidence=ISS] [GO:0035326 "enhancer binding"
evidence=ISS] [GO:0042127 "regulation of cell proliferation"
evidence=ISS] [GO:0042981 "regulation of apoptotic process"
evidence=ISS] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0043491 "protein kinase B signaling cascade" evidence=ISS]
[GO:0045662 "negative regulation of myoblast differentiation"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0046533 "negative regulation of photoreceptor cell
differentiation" evidence=ISS] [GO:0050679 "positive regulation of
epithelial cell proliferation" evidence=ISS] [GO:0050680 "negative
regulation of epithelial cell proliferation" evidence=ISS]
[GO:0051216 "cartilage development" evidence=ISS] [GO:0060008
"Sertoli cell differentiation" evidence=ISS] [GO:0060041 "retina
development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
rod cell differentiation" evidence=ISS] [GO:0060517 "epithelial
cell proliferation involved in prostatic bud elongation"
evidence=ISS] [GO:0060729 "intestinal epithelial structure
maintenance" evidence=ISS] [GO:0060784 "regulation of cell
proliferation involved in tissue homeostasis" evidence=ISS]
[GO:0061138 "morphogenesis of a branching epithelium" evidence=ISS]
[GO:0070168 "negative regulation of biomineral tissue development"
evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade" evidence=ISS]
[GO:0071260 "cellular response to mechanical stimulus"
evidence=ISS] [GO:0071364 "cellular response to epidermal growth
factor stimulus" evidence=ISS] [GO:0071504 "cellular response to
heparin" evidence=ISS] [GO:0072034 "renal vesicle induction"
evidence=ISS] [GO:0072289 "metanephric nephron tubule formation"
evidence=ISS] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=ISS] [GO:0090103 "cochlea
morphogenesis" evidence=ISS] [GO:0090184 "positive regulation of
kidney development" evidence=ISS] [GO:0090190 "positive regulation
of branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000020 "positive regulation of male gonad development"
evidence=ISS] [GO:2000741 "positive regulation of mesenchymal stem
cell differentiation" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
GO:GO:0006461 GO:GO:0019933 GO:GO:0070371 GO:GO:0014068
GO:GO:0007283 GO:GO:0003682 GO:GO:0003705 GO:GO:0001077
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504 GO:GO:0001942
GO:GO:0032332 GO:GO:0030279 GO:GO:0090090 GO:GO:0071260
GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
GO:GO:0043491 GO:GO:0001502 GO:GO:0001837 GO:GO:0050680
GO:GO:0001158 GO:GO:0030858 GO:GO:0010634 GO:GO:0016585
GO:GO:0006334 GO:GO:0003413 GO:GO:0050679 GO:GO:0002053
GO:GO:0001046 GO:GO:0003203 GO:GO:0032331 GO:GO:0045662
GO:GO:0060008 GO:GO:0030916 GO:GO:2000020 GO:GO:0046533
GO:GO:0090103 GO:GO:0010564 GO:GO:0019100 GO:GO:0003179
GO:GO:0070168 GO:GO:0072289 eggNOG:NOG295709 HOGENOM:HOG000108876
HOVERGEN:HBG002061 KO:K09270 InterPro:IPR022151 Pfam:PF12444
GO:GO:2000741 GO:GO:0072034 GO:GO:0060221 OrthoDB:EOG4TXBRZ
GO:GO:0003415 GO:GO:0060517 GO:GO:0060729 GO:GO:0002683
GO:GO:0060784 CTD:6662 EMBL:AF322902 RefSeq:NP_001009029.1
UniGene:Ptr.6522 ProteinModelPortal:Q9BG89 SMR:Q9BG89 STRING:Q9BG89
GeneID:450101 KEGG:ptr:450101 InParanoid:Q9BG89 NextBio:20833065
Uniprot:Q9BG89
Length = 509
Score = 121 (47.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
NKP KRP +AF V+ + R + +P + A + K G+ W+ ++E++K P+V +AE
Sbjct: 101 NKPHVKRPMNAFMVWAQAARRKLGDQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159
Query: 94 KRKVEYEKDMKNY 106
+ +V+++KD +Y
Sbjct: 160 RLRVQHKKDHPDY 172
>UNIPROTKB|A4IIJ8 [details] [associations]
symbol:sox10 "Transcription factor Sox-10" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0014029 "neural crest
formation" evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0030318 "melanocyte differentiation" evidence=ISS] [GO:0032183
"SUMO binding" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0001755 GO:GO:0006351 GO:GO:0019899
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0010628 GO:GO:0014044 GO:GO:0030318 GO:GO:0048709
GO:GO:0050768 GO:GO:0048484 GO:GO:0048840 GO:GO:0048752
GO:GO:0032183 GO:GO:0071600 GO:GO:0014029 CTD:6663 eggNOG:NOG295709
GeneTree:ENSGT00670000097649 HOGENOM:HOG000108876 KO:K09270
OrthoDB:EOG41C6WH InterPro:IPR022151 Pfam:PF12444 EMBL:BC136047
RefSeq:NP_001093691.1 UniGene:Str.9225 ProteinModelPortal:A4IIJ8
SMR:A4IIJ8 STRING:A4IIJ8 Ensembl:ENSXETT00000013902
GeneID:100101700 KEGG:xtr:100101700 Xenbase:XB-GENE-480304
OMA:STSHYTE Bgee:A4IIJ8 Uniprot:A4IIJ8
Length = 436
Score = 120 (47.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
+KP KRP +AF V+ + R + +P + A + K G+ W+ ++E DK P++ +AE
Sbjct: 86 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNENDKRPFIEEAE 144
Query: 94 KRKVEYEKDMKNYN---RRQAEGTKP 116
+ +++++KD +Y RR+ G KP
Sbjct: 145 RLRMQHKKDHPDYKYQPRRRKNG-KP 169
>UNIPROTKB|F1NLS2 [details] [associations]
symbol:TFAM "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=IEA] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003682 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
GO:GO:0033108 GO:GO:0006391 GO:GO:0070363 OMA:YENEMKS
GeneTree:ENSGT00440000039001 EMBL:AADN02035299 IPI:IPI00588565
Ensembl:ENSGALT00000041096 ArrayExpress:F1NLS2 Uniprot:F1NLS2
Length = 264
Score = 116 (45.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP S F +F+ E +Q K P K K E W+++S + K PY+ A+ K
Sbjct: 151 KPKRPRSGFNIFVSENFQQSKGLSPTAKL-----KQLFETWQNLSSSQKQPYLQLAQDDK 205
Query: 97 VEYEKDMKNYNRRQAE 112
V Y+ +MK++ + E
Sbjct: 206 VRYQNEMKSWEAKMVE 221
Score = 94 (38.1 bits), Expect = 0.00033, P = 0.00033
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY--VAKAEK 94
+PKRP SA+F F+ + + +++ +P+ S+ V K G W+ + + K Y K +
Sbjct: 46 RPKRPLSAYFRFLRDNQPAFRQQNPELNSLELVKKLAGV-WRELPASQKQVYEEARKTDW 104
Query: 95 RKVEYEKDMKNY 106
RK YE+ + Y
Sbjct: 105 RK--YEEQLAAY 114
>UNIPROTKB|Q8AXX8 [details] [associations]
symbol:sox10 "Transcription factor Sox-10" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0014029 "neural crest formation"
evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0030318 "melanocyte differentiation" evidence=IMP] [GO:0032183
"SUMO binding" evidence=IPI] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0030318 GO:GO:0014029
HSSP:P48431 CTD:6663 KO:K09270 InterPro:IPR022151 Pfam:PF12444
EMBL:AY149116 EMBL:AY157667 EMBL:BC170062 RefSeq:NP_001082358.1
UniGene:Xl.1588 ProteinModelPortal:Q8AXX8 SMR:Q8AXX8 GeneID:398422
KEGG:xla:398422 Xenbase:XB-GENE-865362 Uniprot:Q8AXX8
Length = 446
Score = 120 (47.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
+KP KRP +AF V+ + R + +P + A + K G+ W+ ++E DK P++ +AE
Sbjct: 94 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNENDKRPFIEEAE 152
Query: 94 KRKVEYEKDMKNYN---RRQAEGTKP 116
+ +++++KD +Y RR+ G KP
Sbjct: 153 RLRMQHKKDHPDYKYQPRRRKNG-KP 177
>UNIPROTKB|Q9W757 [details] [associations]
symbol:SOX10 "Transcription factor SOX-10" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000978
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding" evidence=IEA] [GO:0000980 "RNA polymerase II distal
enhancer sequence-specific DNA binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0001755 "neural
crest cell migration" evidence=IEA] [GO:0002052 "positive
regulation of neuroblast proliferation" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003705 "RNA polymerase II
distal enhancer sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0007422 "peripheral nervous system
development" evidence=IEA] [GO:0014015 "positive regulation of
gliogenesis" evidence=IEA] [GO:0030318 "melanocyte differentiation"
evidence=IEA] [GO:0031315 "extrinsic to mitochondrial outer
membrane" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048469 "cell maturation" evidence=IEA] [GO:0048484 "enteric
nervous system development" evidence=IEA] [GO:0048546 "digestive
tract morphogenesis" evidence=IEA] [GO:0048589 "developmental
growth" evidence=IEA] [GO:0048709 "oligodendrocyte differentiation"
evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA] [GO:0060959 "cardiac
neuron development" evidence=IEP] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0043066 GO:GO:0045944 GO:GO:0003682
GO:GO:0003705 GO:GO:0000980 GO:GO:0000978 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048589
GO:GO:0090090 GO:GO:0030318 GO:GO:0031315 EMBL:AF152356
EMBL:AJ245601 IPI:IPI00599244 RefSeq:NP_990123.1 UniGene:Gga.4428
ProteinModelPortal:Q9W757 SMR:Q9W757 STRING:Q9W757
Ensembl:ENSGALT00000020083 GeneID:395573 KEGG:gga:395573 CTD:6663
eggNOG:NOG295709 GeneTree:ENSGT00670000097649 HOGENOM:HOG000108876
HOVERGEN:HBG002061 InParanoid:Q9W757 KO:K09270 OMA:GPSMASD
OrthoDB:EOG41C6WH NextBio:20815647 GO:GO:0060959 InterPro:IPR022151
Pfam:PF12444 Uniprot:Q9W757
Length = 461
Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/83 (31%), Positives = 50/83 (60%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
+KP KRP +AF V+ + R + +P + A + K G+ W+ ++E+DK P++ +AE
Sbjct: 94 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAE 152
Query: 94 KRKVEYEKDMKNYN---RRQAEG 113
+ +++++KD +Y RR+ G
Sbjct: 153 RLRMQHKKDHPDYKYQPRRRKNG 175
>UNIPROTKB|Q8AXQ4 [details] [associations]
symbol:sox12 "Transcription factor Sox-12" species:8355
"Xenopus laevis" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0005634 "nucleus"
evidence=IC] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HSSP:P48431 KO:K09268 CTD:6666 EMBL:AB086020 EMBL:BC169671
EMBL:BC169697 RefSeq:NP_001079045.1 UniGene:Xl.21610
ProteinModelPortal:Q8AXQ4 GeneID:373574 KEGG:xla:373574
Xenbase:XB-GENE-864958 Uniprot:Q8AXQ4
Length = 244
Score = 115 (45.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP +AF V+ + R + P N A + ++ G++WK + + DK PYV +AE+ +++
Sbjct: 32 KRPMNAFMVWSQIERRKLMSLCP-NMHNADISRSLGQRWKLLQDTDKIPYVREAERLRLK 90
Query: 99 YEKDMKNYNRR 109
+ D NY R
Sbjct: 91 HMADYPNYKYR 101
>UNIPROTKB|P56693 [details] [associations]
symbol:SOX10 "Transcription factor SOX-10" species:9606
"Homo sapiens" [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA]
[GO:0000980 "RNA polymerase II distal enhancer sequence-specific
DNA binding" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0002052 "positive regulation of
neuroblast proliferation" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003705 "RNA polymerase II distal
enhancer sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0007422 "peripheral nervous system
development" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0014015 "positive regulation of
gliogenesis" evidence=IEA] [GO:0030318 "melanocyte differentiation"
evidence=IEA] [GO:0031315 "extrinsic to mitochondrial outer
membrane" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048469 "cell maturation" evidence=IEA]
[GO:0048484 "enteric nervous system development" evidence=IEA]
[GO:0048546 "digestive tract morphogenesis" evidence=IEA]
[GO:0048589 "developmental growth" evidence=IEA] [GO:0048709
"oligodendrocyte differentiation" evidence=IEA] [GO:0048863 "stem
cell differentiation" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0042802 "identical protein binding" evidence=IPI]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0043066
GO:GO:0001755 GO:GO:0001701 GO:GO:0045944 GO:GO:0048863
GO:GO:0007422 GO:GO:0006357 GO:GO:0003682 GO:GO:0003705
GO:GO:0000980 GO:GO:0000978 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0003713 GO:GO:0048589
GO:GO:0090090 GO:GO:0009653 GO:GO:0030318 GO:GO:0048709
GO:GO:0031315 GO:GO:0048484 GO:GO:0002052 GO:GO:0048546
GO:GO:0048469 EMBL:AL031587 Orphanet:897 GO:GO:0014015 Orphanet:895
CTD:6663 eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061
KO:K09270 InterPro:IPR022151 Pfam:PF12444 EMBL:AJ001183
EMBL:CR456584 EMBL:BT020029 EMBL:BC002824 EMBL:BC007595
IPI:IPI00010781 RefSeq:NP_008872.1 UniGene:Hs.376984
ProteinModelPortal:P56693 SMR:P56693 IntAct:P56693
MINT:MINT-1781695 STRING:P56693 PhosphoSite:P56693 DMDM:6175075
PRIDE:P56693 DNASU:6663 Ensembl:ENST00000360880
Ensembl:ENST00000396884 GeneID:6663 KEGG:hsa:6663 UCSC:uc003aun.1
GeneCards:GC22M038366 HGNC:HGNC:11190 HPA:CAB003171 MIM:602229
MIM:609136 MIM:611584 MIM:613266 neXtProt:NX_P56693 Orphanet:163746
PharmGKB:PA36027 InParanoid:P56693 OMA:YYGHSSQ PhylomeDB:P56693
GenomeRNAi:6663 NextBio:25977 ArrayExpress:P56693 Bgee:P56693
CleanEx:HS_SOX10 Genevestigator:P56693 GermOnline:ENSG00000100146
Uniprot:P56693
Length = 466
Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/83 (31%), Positives = 50/83 (60%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
+KP KRP +AF V+ + R + +P + A + K G+ W+ ++E+DK P++ +AE
Sbjct: 100 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAE 158
Query: 94 KRKVEYEKDMKNYN---RRQAEG 113
+ +++++KD +Y RR+ G
Sbjct: 159 RLRMQHKKDHPDYKYQPRRRKNG 181
>MGI|MGI:98358 [details] [associations]
symbol:Sox10 "SRY-box containing gene 10" species:10090 "Mus
musculus" [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=IDA] [GO:0000980
"RNA polymerase II distal enhancer sequence-specific DNA binding"
evidence=IDA] [GO:0000981 "sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IDA]
[GO:0001701 "in utero embryonic development" evidence=IGI]
[GO:0001755 "neural crest cell migration" evidence=IMP] [GO:0002052
"positive regulation of neuroblast proliferation" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISO;IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IMP] [GO:0003705 "RNA
polymerase II distal enhancer sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0007422 "peripheral nervous system development" evidence=IGI]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0014015 "positive regulation of gliogenesis" evidence=IMP]
[GO:0030154 "cell differentiation" evidence=IMP] [GO:0030318
"melanocyte differentiation" evidence=IMP] [GO:0031315 "extrinsic
to mitochondrial outer membrane" evidence=IDA] [GO:0042802
"identical protein binding" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO;IDA;IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI;IDA;IMP] [GO:0048469 "cell maturation"
evidence=IGI;IMP] [GO:0048484 "enteric nervous system development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IGI;IMP] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0048709 "oligodendrocyte differentiation" evidence=IMP]
[GO:0090090 "negative regulation of canonical Wnt receptor
signaling pathway" evidence=IDA] InterPro:IPR009071 MGI:MGI:98358
Pfam:PF00505 GO:GO:0005634 GO:GO:0043066 GO:GO:0001755
GO:GO:0001701 GO:GO:0045944 GO:GO:0048863 GO:GO:0007422
GO:GO:0003682 GO:GO:0003705 GO:GO:0000980 GO:GO:0000978
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0048589 GO:GO:0090090 GO:GO:0030318 GO:GO:0048709
GO:GO:0031315 GO:GO:0048484 GO:GO:0002052 GO:GO:0048546
GO:GO:0048469 GO:GO:0014015 CTD:6663 eggNOG:NOG295709
GeneTree:ENSGT00670000097649 HOVERGEN:HBG002061 KO:K09270
OrthoDB:EOG41C6WH InterPro:IPR022151 Pfam:PF12444 OMA:YYGHSSQ
EMBL:AF017182 EMBL:AF047043 EMBL:U66141 EMBL:BC018551 EMBL:BC023356
EMBL:BC025171 EMBL:Z18959 EMBL:U70441 IPI:IPI00929823 PIR:S30242
RefSeq:NP_035567.1 UniGene:Mm.276739 ProteinModelPortal:Q04888
SMR:Q04888 STRING:Q04888 PhosphoSite:Q04888 PaxDb:Q04888
PRIDE:Q04888 Ensembl:ENSMUST00000040019 GeneID:20665 KEGG:mmu:20665
InParanoid:Q04888 ChiTaRS:SOX10 NextBio:299123 Bgee:Q04888
CleanEx:MM_SOX10 CleanEx:MM_SOX21 Genevestigator:Q04888
GermOnline:ENSMUSG00000033006 Uniprot:Q04888
Length = 466
Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/83 (31%), Positives = 50/83 (60%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
+KP KRP +AF V+ + R + +P + A + K G+ W+ ++E+DK P++ +AE
Sbjct: 100 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAE 158
Query: 94 KRKVEYEKDMKNYN---RRQAEG 113
+ +++++KD +Y RR+ G
Sbjct: 159 RLRMQHKKDHPDYKYQPRRRKNG 181
>RGD|3735 [details] [associations]
symbol:Sox10 "SRY (sex determining region Y)-box 10" species:10116
"Rattus norvegicus" [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA
binding" evidence=IEA;ISO] [GO:0000981 "sequence-specific DNA binding
RNA polymerase II transcription factor activity" evidence=ISO]
[GO:0001701 "in utero embryonic development" evidence=IEA;ISO]
[GO:0001755 "neural crest cell migration" evidence=IEA;ISO]
[GO:0002052 "positive regulation of neuroblast proliferation"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003682 "chromatin binding" evidence=IEA;ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0003705 "RNA polymerase II distal enhancer
sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0007422 "peripheral nervous system
development" evidence=IEA;ISO] [GO:0008134 "transcription factor
binding" evidence=IDA;IPI] [GO:0014015 "positive regulation of
gliogenesis" evidence=IEA;ISO] [GO:0030154 "cell differentiation"
evidence=ISO] [GO:0030318 "melanocyte differentiation"
evidence=IEA;ISO] [GO:0031315 "extrinsic to mitochondrial outer
membrane" evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=IEA;ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA;ISO] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0045944 "positive regulation of transcription from RNA polymerase
II promoter" evidence=IEA;ISO] [GO:0048468 "cell development"
evidence=NAS] [GO:0048469 "cell maturation" evidence=IEA;ISO]
[GO:0048484 "enteric nervous system development" evidence=IEA;ISO]
[GO:0048546 "digestive tract morphogenesis" evidence=IEA;ISO]
[GO:0048589 "developmental growth" evidence=IEA;ISO] [GO:0048709
"oligodendrocyte differentiation" evidence=IEA;ISO] [GO:0048863 "stem
cell differentiation" evidence=IEP] [GO:0090090 "negative regulation
of canonical Wnt receptor signaling pathway" evidence=IEA;ISO]
InterPro:IPR009071 Pfam:PF00505 RGD:3735 GO:GO:0005634 GO:GO:0005737
GO:GO:0045892 GO:GO:0045893 GO:GO:0043066 GO:GO:0003677 GO:GO:0001755
GO:GO:0001701 GO:GO:0045944 GO:GO:0048863 GO:GO:0007422 GO:GO:0003682
GO:GO:0003705 GO:GO:0000980 GO:GO:0000978 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048589
GO:GO:0090090 GO:GO:0008134 GO:GO:0030318 GO:GO:0048709 GO:GO:0048468
GO:GO:0031315 GO:GO:0048484 GO:GO:0002052 GO:GO:0048546 GO:GO:0048469
GO:GO:0014015 CTD:6663 eggNOG:NOG295709 GeneTree:ENSGT00670000097649
HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270 OrthoDB:EOG41C6WH
InterPro:IPR022151 Pfam:PF12444 OMA:YYGHSSQ EMBL:AJ001029
EMBL:BC062067 IPI:IPI00195985 RefSeq:NP_062066.1 UniGene:Rn.10883
ProteinModelPortal:O55170 SMR:O55170 IntAct:O55170 MINT:MINT-3376332
STRING:O55170 Ensembl:ENSRNOT00000015283 GeneID:29361 KEGG:rno:29361
UCSC:RGD:3735 InParanoid:O55170 NextBio:608888 Genevestigator:O55170
GermOnline:ENSRNOG00000011305 Uniprot:O55170
Length = 466
Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/83 (31%), Positives = 50/83 (60%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
+KP KRP +AF V+ + R + +P + A + K G+ W+ ++E+DK P++ +AE
Sbjct: 100 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAE 158
Query: 94 KRKVEYEKDMKNYN---RRQAEG 113
+ +++++KD +Y RR+ G
Sbjct: 159 RLRMQHKKDHPDYKYQPRRRKNG 181
>UNIPROTKB|F1PHT3 [details] [associations]
symbol:SOX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA] [GO:0048709
"oligodendrocyte differentiation" evidence=IEA] [GO:0048589
"developmental growth" evidence=IEA] [GO:0048546 "digestive tract
morphogenesis" evidence=IEA] [GO:0048484 "enteric nervous system
development" evidence=IEA] [GO:0048469 "cell maturation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0042802 "identical protein binding" evidence=IEA] [GO:0031315
"extrinsic to mitochondrial outer membrane" evidence=IEA]
[GO:0030318 "melanocyte differentiation" evidence=IEA] [GO:0014015
"positive regulation of gliogenesis" evidence=IEA] [GO:0007422
"peripheral nervous system development" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003705 "RNA polymerase II distal
enhancer sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000980 "RNA polymerase II distal
enhancer sequence-specific DNA binding" evidence=IEA] [GO:0000978
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0043066 GO:GO:0001755 GO:GO:0001701
GO:GO:0045944 GO:GO:0007422 GO:GO:0003682 GO:GO:0003705
GO:GO:0000980 GO:GO:0000978 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048589 GO:GO:0090090
GO:GO:0030318 GO:GO:0048709 GO:GO:0031315 GO:GO:0048484
GO:GO:0002052 GO:GO:0048546 GO:GO:0048469 GO:GO:0014015 CTD:6663
GeneTree:ENSGT00670000097649 KO:K09270 InterPro:IPR022151
Pfam:PF12444 OMA:YYGHSSQ EMBL:AAEX03007323 RefSeq:XP_538379.3
Ensembl:ENSCAFT00000002231 GeneID:481258 KEGG:cfa:481258
Uniprot:F1PHT3
Length = 468
Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/83 (31%), Positives = 50/83 (60%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
+KP KRP +AF V+ + R + +P + A + K G+ W+ ++E+DK P++ +AE
Sbjct: 102 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAE 160
Query: 94 KRKVEYEKDMKNYN---RRQAEG 113
+ +++++KD +Y RR+ G
Sbjct: 161 RLRMQHKKDHPDYKYQPRRRKNG 183
>UNIPROTKB|F1N6W0 [details] [associations]
symbol:SOX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090090 "negative regulation of canonical Wnt receptor
signaling pathway" evidence=IEA] [GO:0048709 "oligodendrocyte
differentiation" evidence=IEA] [GO:0048589 "developmental growth"
evidence=IEA] [GO:0048546 "digestive tract morphogenesis"
evidence=IEA] [GO:0048484 "enteric nervous system development"
evidence=IEA] [GO:0048469 "cell maturation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0031315 "extrinsic to
mitochondrial outer membrane" evidence=IEA] [GO:0030318 "melanocyte
differentiation" evidence=IEA] [GO:0014015 "positive regulation of
gliogenesis" evidence=IEA] [GO:0007422 "peripheral nervous system
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003705 "RNA polymerase II distal enhancer sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0002052 "positive
regulation of neuroblast proliferation" evidence=IEA] [GO:0001755
"neural crest cell migration" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000980 "RNA polymerase II
distal enhancer sequence-specific DNA binding" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0043066 GO:GO:0001755
GO:GO:0001701 GO:GO:0045944 GO:GO:0007422 GO:GO:0003682
GO:GO:0003705 GO:GO:0000980 GO:GO:0000978 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048589
GO:GO:0090090 GO:GO:0030318 GO:GO:0048709 GO:GO:0031315
GO:GO:0048484 GO:GO:0002052 GO:GO:0048546 GO:GO:0048469
GO:GO:0014015 CTD:6663 GeneTree:ENSGT00670000097649 KO:K09270
InterPro:IPR022151 Pfam:PF12444 OMA:YYGHSSQ EMBL:DAAA02014653
EMBL:DAAA02014645 EMBL:DAAA02014646 EMBL:DAAA02014647
EMBL:DAAA02014648 EMBL:DAAA02014649 EMBL:DAAA02014650
EMBL:DAAA02014651 EMBL:DAAA02014652 IPI:IPI00718217
RefSeq:NP_001180176.1 UniGene:Bt.22876 Ensembl:ENSBTAT00000034677
GeneID:353115 KEGG:bta:353115 NextBio:20812699 Uniprot:F1N6W0
Length = 469
Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/83 (31%), Positives = 50/83 (60%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
+KP KRP +AF V+ + R + +P + A + K G+ W+ ++E+DK P++ +AE
Sbjct: 103 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAE 161
Query: 94 KRKVEYEKDMKNYN---RRQAEG 113
+ +++++KD +Y RR+ G
Sbjct: 162 RLRMQHKKDHPDYKYQPRRRKNG 184
>UNIPROTKB|A5A763 [details] [associations]
symbol:SOX10 "Transcription factor SOX-10" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:6663 eggNOG:NOG295709 HOGENOM:HOG000108876
HOVERGEN:HBG002061 KO:K09270 OrthoDB:EOG41C6WH InterPro:IPR022151
Pfam:PF12444 EMBL:AB271933 RefSeq:NP_001093403.1 UniGene:Ssc.27602
ProteinModelPortal:A5A763 SMR:A5A763 STRING:A5A763 GeneID:414903
KEGG:ssc:414903 Uniprot:A5A763
Length = 469
Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/83 (31%), Positives = 50/83 (60%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
+KP KRP +AF V+ + R + +P + A + K G+ W+ ++E+DK P++ +AE
Sbjct: 103 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAE 161
Query: 94 KRKVEYEKDMKNYN---RRQAEG 113
+ +++++KD +Y RR+ G
Sbjct: 162 RLRMQHKKDHPDYKYQPRRRKNG 184
>UNIPROTKB|E1B9L6 [details] [associations]
symbol:SOX15 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048627 "myoblast development" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045843 "negative
regulation of striated muscle tissue development" evidence=IEA]
[GO:0043403 "skeletal muscle tissue regeneration" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0045944 GO:GO:0003682
GO:GO:0045843 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101940
GO:GO:0043403 GO:GO:0048627 CTD:6665 KO:K09271 OMA:PQSDPRL
EMBL:DAAA02048793 IPI:IPI00703496 RefSeq:NP_001179004.1
UniGene:Bt.15965 Ensembl:ENSBTAT00000007184 GeneID:505878
KEGG:bta:505878 NextBio:20867356 Uniprot:E1B9L6
Length = 233
Score = 114 (45.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KRP +AF V+ R Q + +PK + + + K G +WK + E +K P+V +A++ +
Sbjct: 48 KVKRPMNAFMVWSSAQRRQMAQQNPKMHN-SEISKRLGAQWKLLGEDEKRPFVEEAKRLR 106
Query: 97 VEYEKDMKNYNRRQAEGTK 115
+ +D +Y R +K
Sbjct: 107 ARHLRDYPDYKYRPRRKSK 125
>ZFIN|ZDB-GENE-080725-1 [details] [associations]
symbol:sox18 "SRY-box containing gene 18"
species:7955 "Danio rerio" [GO:0001570 "vasculogenesis"
evidence=IGI] InterPro:IPR009071 Pfam:PF00505
ZFIN:ZDB-GENE-080725-1 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0001570 InterPro:IPR021934
Pfam:PF12067 PROSITE:PS51516 GeneTree:ENSGT00670000097649 KO:K09270
CTD:54345 EMBL:CR457456 IPI:IPI00632675 RefSeq:XP_001337702.1
UniGene:Dr.88332 Ensembl:ENSDART00000132992 GeneID:797246
KEGG:dre:797246 NextBio:20932931 Bgee:E7F9I2 Uniprot:E7F9I2
Length = 431
Score = 119 (46.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF V+ ++ R++ +P + A + K G+ WK++S DK P+V +AE+ +++
Sbjct: 95 RRPMNAFMVWAKDERKRLAIQNPDLHN-AVLSKMLGQSWKALSTLDKRPFVEEAERLRLQ 153
Query: 99 YEKDMKNYNRRQAEGTKP 116
+ +D NY R +P
Sbjct: 154 HLQDHPNYKYRPRRKKQP 171
>UNIPROTKB|P57073 [details] [associations]
symbol:SOX8 "Transcription factor SOX-8" species:9606 "Homo
sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0046533 "negative regulation of photoreceptor
cell differentiation" evidence=IEA] [GO:0048469 "cell maturation"
evidence=IEA] [GO:0060018 "astrocyte fate commitment" evidence=IEA]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0001755
"neural crest cell migration" evidence=ISS] [GO:0014015 "positive
regulation of gliogenesis" evidence=ISS] [GO:0043066 "negative
regulation of apoptotic process" evidence=ISS] [GO:0048484 "enteric
nervous system development" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0001649 "osteoblast differentiation"
evidence=ISS] [GO:0001701 "in utero embryonic development"
evidence=ISS] [GO:0007283 "spermatogenesis" evidence=ISS]
[GO:0007422 "peripheral nervous system development" evidence=ISS]
[GO:0010817 "regulation of hormone levels" evidence=ISS]
[GO:0033690 "positive regulation of osteoblast proliferation"
evidence=ISS] [GO:0045444 "fat cell differentiation" evidence=ISS]
[GO:0045165 "cell fate commitment" evidence=ISS] [GO:0060009
"Sertoli cell development" evidence=ISS] [GO:0048709
"oligodendrocyte differentiation" evidence=ISS] [GO:0060041 "retina
development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
rod cell differentiation" evidence=ISS] [GO:0061138 "morphogenesis
of a branching epithelium" evidence=ISS] [GO:0072197 "ureter
morphogenesis" evidence=ISS] [GO:0072289 "metanephric nephron
tubule formation" evidence=ISS] [GO:0000979 "RNA polymerase II core
promoter sequence-specific DNA binding" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0072034 "renal vesicle induction" evidence=ISS] [GO:0090184
"positive regulation of kidney development" evidence=ISS]
[GO:0090190 "positive regulation of branching involved in ureteric
bud morphogenesis" evidence=ISS] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS] [GO:0008584 "male
gonad development" evidence=ISS] [GO:0045662 "negative regulation
of myoblast differentiation" evidence=ISS] [GO:0060612 "adipose
tissue development" evidence=ISS] [GO:0007165 "signal transduction"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 GO:GO:0045892 GO:GO:0007165 GO:GO:0043066
GO:GO:0001755 GO:GO:0001701 GO:GO:0045944 GO:GO:0007422
GO:GO:0060612 GO:GO:0003700 GO:GO:0007283 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0060009 GO:GO:0090190 GO:GO:0001649 GO:GO:0045444
GO:GO:0000979 GO:GO:0048709 GO:GO:0048484 GO:GO:0010817
GO:GO:0048469 GO:GO:0033690 GO:GO:0045662 GO:GO:0046533
EMBL:AE006465 GO:GO:0060018 GO:GO:0014015 GO:GO:0072289
GO:GO:0072197 HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
InterPro:IPR022151 Pfam:PF12444 CTD:30812 eggNOG:NOG324597
OrthoDB:EOG4ZKJMD EMBL:AF226675 EMBL:Z99757 EMBL:BC031797
EMBL:AF164104 IPI:IPI00299069 RefSeq:NP_055402.2 UniGene:Hs.243678
ProteinModelPortal:P57073 SMR:P57073 IntAct:P57073 STRING:P57073
PhosphoSite:P57073 DMDM:10720294 PRIDE:P57073
Ensembl:ENST00000293894 GeneID:30812 KEGG:hsa:30812 UCSC:uc002ckn.3
GeneCards:GC16P001033 HGNC:HGNC:11203 HPA:HPA041640 MIM:605923
neXtProt:NX_P57073 PharmGKB:PA36040 InParanoid:P57073 OMA:DQSHGSP
PhylomeDB:P57073 ChiTaRS:SOX8 GenomeRNAi:30812 NextBio:52860
Bgee:P57073 CleanEx:HS_SOX8 Genevestigator:P57073
GermOnline:ENSG00000005513 GO:GO:0061138 GO:GO:0072034
GO:GO:0060221 Uniprot:P57073
Length = 446
Score = 119 (46.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 37 KP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
KP KRP +AF V+ + R + +P + A + K G+ W+ +SE++K P+V +AE+
Sbjct: 99 KPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSESEKRPFVEEAER 157
Query: 95 RKVEYEKDMKNY 106
+V+++KD +Y
Sbjct: 158 LRVQHKKDHPDY 169
>UNIPROTKB|Q8AWH3 [details] [associations]
symbol:sox17a "Transcription factor Sox-17-alpha"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0007492 "endoderm development" evidence=ISS]
[GO:0008013 "beta-catenin binding" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0016055 GO:GO:0043565
GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0070121 GO:GO:0008013
GO:GO:0007492 GO:GO:0007369 GO:GO:0061371 HSSP:P48431
eggNOG:NOG242943 KO:K04495 InterPro:IPR021934 Pfam:PF12067
PROSITE:PS51516 GeneTree:ENSGT00670000097649 HOGENOM:HOG000069999
OrthoDB:EOG4KD6M5 EMBL:AY157635 EMBL:AC148408 EMBL:CR848309
EMBL:BC074527 RefSeq:NP_989425.1 UniGene:Str.114
ProteinModelPortal:Q8AWH3 SMR:Q8AWH3 STRING:Q8AWH3
Ensembl:ENSXETT00000053697 GeneID:395066 KEGG:xtr:395066 CTD:395066
Xenbase:XB-GENE-484295 InParanoid:Q8AWH3 OMA:FNGHEAN Bgee:Q8AWH3
GO:GO:0035469 Uniprot:Q8AWH3
Length = 383
Score = 118 (46.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 23/71 (32%), Positives = 46/71 (64%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF V+ ++ R++ + +P + A + K G+ WK+++ A+K P+V +AE+ +V+
Sbjct: 62 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQ 120
Query: 99 YEKDMKNYNRR 109
+ +D NY R
Sbjct: 121 HMQDHPNYKYR 131
>UNIPROTKB|F5H3H1 [details] [associations]
symbol:SRY "Sex-determining region Y protein" species:9606
"Homo sapiens" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0030238 "male sex
determination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007548 "sex differentiation"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017253 PIRSF:PIRSF037653
Pfam:PF00505 GO:GO:0005634 GO:GO:0030154 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007548 GO:GO:0030238
PANTHER:PTHR10270:SF48 HGNC:HGNC:11311 EMBL:AC006040
IPI:IPI01013243 ProteinModelPortal:F5H3H1 SMR:F5H3H1
Ensembl:ENST00000534739 ArrayExpress:F5H3H1 Bgee:F5H3H1
Uniprot:F5H3H1
Length = 165
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++ KRP +AF V+ + R + ++P+ ++ + + K G +WK ++EA+K P+ +A+K
Sbjct: 58 DRVKRPMNAFIVWSRDQRRKMALENPRMRN-SEISKQLGYQWKMLTEAEKWPFFQEAQKL 116
Query: 96 KVEYEKDMKNYNRRQAEGTK 115
+ + + NY R K
Sbjct: 117 QAMHREKYPNYKYRPRRKAK 136
>RGD|1309072 [details] [associations]
symbol:Sox8 "SRY (sex determining region Y)-box 8" species:10116
"Rattus norvegicus" [GO:0000979 "RNA polymerase II core promoter
sequence-specific DNA binding" evidence=ISO;ISS] [GO:0001649
"osteoblast differentiation" evidence=ISO;ISS] [GO:0001701 "in
utero embryonic development" evidence=ISO;ISS] [GO:0001755 "neural
crest cell migration" evidence=ISO;ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007165 "signal transduction" evidence=ISO;ISS] [GO:0007283
"spermatogenesis" evidence=ISO;ISS] [GO:0007422 "peripheral nervous
system development" evidence=ISO;ISS] [GO:0008134 "transcription
factor binding" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008584 "male gonad development" evidence=ISO;ISS]
[GO:0010628 "positive regulation of gene expression" evidence=ISO]
[GO:0010817 "regulation of hormone levels" evidence=ISO;ISS]
[GO:0014015 "positive regulation of gliogenesis" evidence=ISO;ISS]
[GO:0033690 "positive regulation of osteoblast proliferation"
evidence=ISO;ISS] [GO:0035914 "skeletal muscle cell
differentiation" evidence=ISO] [GO:0043066 "negative regulation of
apoptotic process" evidence=ISO;ISS] [GO:0043565 "sequence-specific
DNA binding" evidence=ISO] [GO:0045165 "cell fate commitment"
evidence=ISO;ISS] [GO:0045444 "fat cell differentiation"
evidence=ISO;ISS] [GO:0045662 "negative regulation of myoblast
differentiation" evidence=ISO;ISS] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0046533
"negative regulation of photoreceptor cell differentiation"
evidence=IEA;ISO] [GO:0048469 "cell maturation" evidence=IEA;ISO]
[GO:0048484 "enteric nervous system development" evidence=ISO;ISS]
[GO:0048709 "oligodendrocyte differentiation" evidence=ISO;ISS]
[GO:0060009 "Sertoli cell development" evidence=ISO;ISS]
[GO:0060018 "astrocyte fate commitment" evidence=IEA;ISO]
[GO:0060041 "retina development in camera-type eye"
evidence=ISO;ISS] [GO:0060221 "retinal rod cell differentiation"
evidence=ISO;ISS] [GO:0060612 "adipose tissue development"
evidence=ISO;ISS] [GO:0061138 "morphogenesis of a branching
epithelium" evidence=ISO;ISS] [GO:0072034 "renal vesicle induction"
evidence=ISO;ISS] [GO:0072197 "ureter morphogenesis"
evidence=ISO;ISS] [GO:0072289 "metanephric nephron tubule
formation" evidence=ISO;ISS] [GO:0090184 "positive regulation of
kidney development" evidence=ISO;ISS] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=ISO;ISS] InterPro:IPR009071 Pfam:PF00505 RGD:1309072
GO:GO:0005634 GO:GO:0005737 GO:GO:0045892 GO:GO:0007165
GO:GO:0045893 GO:GO:0043066 GO:GO:0001755 GO:GO:0001701
GO:GO:0045944 GO:GO:0007422 GO:GO:0060612 GO:GO:0003700
GO:GO:0007283 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0060009 GO:GO:0090190 GO:GO:0001649
GO:GO:0045444 GO:GO:0000979 EMBL:CH473948 GO:GO:0048709
GO:GO:0048484 GO:GO:0010817 GO:GO:0048469 GO:GO:0033690
GO:GO:0045662 GO:GO:0046533 GO:GO:0060018 GO:GO:0014015
GO:GO:0072289 GO:GO:0072197 GeneTree:ENSGT00670000097649 KO:K09270
InterPro:IPR022151 Pfam:PF12444 CTD:30812 OrthoDB:EOG4ZKJMD
OMA:DQSHGSP GO:GO:0061138 GO:GO:0072034 GO:GO:0060221
IPI:IPI00368755 RefSeq:NP_001100459.1 UniGene:Rn.141194
Ensembl:ENSRNOT00000025494 GeneID:302993 KEGG:rno:302993
UCSC:RGD:1309072 NextBio:650512 Uniprot:D3ZR96
Length = 463
Score = 119 (46.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 37 KP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
KP KRP +AF V+ + R + +P + A + K G+ W+ +SE++K P+V +AE+
Sbjct: 96 KPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSESEKRPFVEEAER 154
Query: 95 RKVEYEKDMKNY 106
+V+++KD +Y
Sbjct: 155 LRVQHKKDHPDY 166
>MGI|MGI:98370 [details] [associations]
symbol:Sox8 "SRY-box containing gene 8" species:10090 "Mus
musculus" [GO:0000979 "RNA polymerase II core promoter
sequence-specific DNA binding" evidence=IDA] [GO:0001649
"osteoblast differentiation" evidence=IMP] [GO:0001701 "in utero
embryonic development" evidence=IGI] [GO:0001755 "neural crest cell
migration" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IMP;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IMP;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007165 "signal
transduction" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IGI;IMP] [GO:0007422 "peripheral nervous system
development" evidence=IGI] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0008584 "male gonad development"
evidence=IGI] [GO:0010628 "positive regulation of gene expression"
evidence=IGI] [GO:0010817 "regulation of hormone levels"
evidence=IMP] [GO:0014015 "positive regulation of gliogenesis"
evidence=IMP] [GO:0033690 "positive regulation of osteoblast
proliferation" evidence=IMP] [GO:0035914 "skeletal muscle cell
differentiation" evidence=IMP] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] [GO:0045165 "cell fate commitment"
evidence=IGI] [GO:0045444 "fat cell differentiation" evidence=IMP]
[GO:0045662 "negative regulation of myoblast differentiation"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA;IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;IDA] [GO:0046533 "negative regulation of
photoreceptor cell differentiation" evidence=IGI] [GO:0048469 "cell
maturation" evidence=IGI;IMP] [GO:0048484 "enteric nervous system
development" evidence=IMP] [GO:0048709 "oligodendrocyte
differentiation" evidence=IMP] [GO:0060009 "Sertoli cell
development" evidence=IGI] [GO:0060018 "astrocyte fate commitment"
evidence=IGI] [GO:0060041 "retina development in camera-type eye"
evidence=IGI] [GO:0060221 "retinal rod cell differentiation"
evidence=IGI] [GO:0060612 "adipose tissue development"
evidence=IMP] [GO:0061138 "morphogenesis of a branching epithelium"
evidence=IGI] [GO:0072034 "renal vesicle induction" evidence=IMP]
[GO:0072197 "ureter morphogenesis" evidence=IGI] [GO:0072289
"metanephric nephron tubule formation" evidence=IGI] [GO:0090184
"positive regulation of kidney development" evidence=IGI]
[GO:0090190 "positive regulation of branching involved in ureteric
bud morphogenesis" evidence=IMP] InterPro:IPR009071 MGI:MGI:98370
Pfam:PF00505 GO:GO:0005634 GO:GO:0005737 GO:GO:0045892
GO:GO:0007165 GO:GO:0043066 GO:GO:0001755 GO:GO:0001701
GO:GO:0045944 GO:GO:0007422 GO:GO:0060612 GO:GO:0003700
GO:GO:0007283 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0060009 GO:GO:0090190
GO:GO:0001649 GO:GO:0045444 GO:GO:0035914 GO:GO:0000979
GO:GO:0048709 GO:GO:0048484 GO:GO:0010817 GO:GO:0048469
GO:GO:0033690 GO:GO:0045662 GO:GO:0046533 GO:GO:0060018
GO:GO:0014015 GO:GO:0072289 GO:GO:0072197 HOGENOM:HOG000108876
HOVERGEN:HBG002061 KO:K09270 InterPro:IPR022151 Pfam:PF12444
CTD:30812 eggNOG:NOG324597 OrthoDB:EOG4ZKJMD OMA:DQSHGSP
ChiTaRS:SOX8 GO:GO:0061138 GO:GO:0072034 GO:GO:0060221
EMBL:AF191325 EMBL:BC085619 EMBL:Z18957 IPI:IPI00111141 PIR:S30246
RefSeq:NP_035577.1 UniGene:Mm.258220 ProteinModelPortal:Q04886
SMR:Q04886 IntAct:Q04886 STRING:Q04886 PhosphoSite:Q04886
PRIDE:Q04886 Ensembl:ENSMUST00000025003 GeneID:20681 KEGG:mmu:20681
InParanoid:Q04886 NextBio:299189 Bgee:Q04886 CleanEx:MM_SOX8
Genevestigator:Q04886 GermOnline:ENSMUSG00000024176 Uniprot:Q04886
Length = 464
Score = 119 (46.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 37 KP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
KP KRP +AF V+ + R + +P + A + K G+ W+ +SE++K P+V +AE+
Sbjct: 96 KPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSESEKRPFVEEAER 154
Query: 95 RKVEYEKDMKNY 106
+V+++KD +Y
Sbjct: 155 LRVQHKKDHPDY 166
>UNIPROTKB|F1MBL5 [details] [associations]
symbol:SOX8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090190 "positive regulation of branching involved in
ureteric bud morphogenesis" evidence=IEA] [GO:0072289 "metanephric
nephron tubule formation" evidence=IEA] [GO:0072197 "ureter
morphogenesis" evidence=IEA] [GO:0072034 "renal vesicle induction"
evidence=IEA] [GO:0061138 "morphogenesis of a branching epithelium"
evidence=IEA] [GO:0060612 "adipose tissue development"
evidence=IEA] [GO:0060221 "retinal rod cell differentiation"
evidence=IEA] [GO:0060018 "astrocyte fate commitment" evidence=IEA]
[GO:0060009 "Sertoli cell development" evidence=IEA] [GO:0048709
"oligodendrocyte differentiation" evidence=IEA] [GO:0048484
"enteric nervous system development" evidence=IEA] [GO:0048469
"cell maturation" evidence=IEA] [GO:0046533 "negative regulation of
photoreceptor cell differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045662 "negative
regulation of myoblast differentiation" evidence=IEA] [GO:0045444
"fat cell differentiation" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0033690
"positive regulation of osteoblast proliferation" evidence=IEA]
[GO:0014015 "positive regulation of gliogenesis" evidence=IEA]
[GO:0010817 "regulation of hormone levels" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0007422 "peripheral nervous system development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007165 "signal
transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0001755 "neural crest cell migration" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0001649
"osteoblast differentiation" evidence=IEA] [GO:0000979 "RNA
polymerase II core promoter sequence-specific DNA binding"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 GO:GO:0045892 GO:GO:0007165 GO:GO:0043066
GO:GO:0001755 GO:GO:0001701 GO:GO:0045944 GO:GO:0007422
GO:GO:0060612 GO:GO:0003700 GO:GO:0007283 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0060009
GO:GO:0090190 GO:GO:0001649 GO:GO:0045444 GO:GO:0000979
GO:GO:0048709 GO:GO:0048484 GO:GO:0010817 GO:GO:0048469
GO:GO:0033690 GO:GO:0045662 GO:GO:0046533 GO:GO:0060018
GO:GO:0014015 GO:GO:0072289 GO:GO:0072197
GeneTree:ENSGT00670000097649 InterPro:IPR022151 Pfam:PF12444
OMA:DQSHGSP GO:GO:0061138 GO:GO:0072034 GO:GO:0060221
EMBL:DAAA02057285 IPI:IPI00696341 Ensembl:ENSBTAT00000027633
Uniprot:F1MBL5
Length = 468
Score = 119 (46.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 37 KP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
KP KRP +AF V+ + R + +P + A + K G+ W+ +SE++K P+V +AE+
Sbjct: 105 KPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSESEKRPFVEEAER 163
Query: 95 RKVEYEKDMKNY 106
+V+++KD +Y
Sbjct: 164 LRVQHKKDHPDY 175
>UNIPROTKB|F1RSI1 [details] [associations]
symbol:SOX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000043 "regulation of cardiac cell fate specification"
evidence=IEA] [GO:2000035 "regulation of stem cell division"
evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA] [GO:0072091 "regulation
of stem cell proliferation" evidence=IEA] [GO:0072001 "renal system
development" evidence=IEA] [GO:0061031 "endodermal digestive tract
morphogenesis" evidence=IEA] [GO:0061010 "gall bladder development"
evidence=IEA] [GO:0061009 "common bile duct development"
evidence=IEA] [GO:0060956 "endocardial cell differentiation"
evidence=IEA] [GO:0060913 "cardiac cell fate determination"
evidence=IEA] [GO:0060807 "regulation of transcription from RNA
polymerase II promoter involved in definitive endodermal cell fate
specification" evidence=IEA] [GO:0060214 "endocardium formation"
evidence=IEA] [GO:0060070 "canonical Wnt receptor signaling
pathway" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] [GO:0048866 "stem cell fate specification"
evidence=IEA] [GO:0048643 "positive regulation of skeletal muscle
tissue development" evidence=IEA] [GO:0048617 "embryonic foregut
morphogenesis" evidence=IEA] [GO:0048568 "embryonic organ
development" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045732 "positive regulation of protein catabolic process"
evidence=IEA] [GO:0045597 "positive regulation of cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0042662 "negative
regulation of mesodermal cell fate specification" evidence=IEA]
[GO:0042074 "cell migration involved in gastrulation" evidence=IEA]
[GO:0031648 "protein destabilization" evidence=IEA] [GO:0030308
"negative regulation of cell growth" evidence=IEA] [GO:0023019
"signal transduction involved in regulation of gene expression"
evidence=IEA] [GO:0021903 "rostrocaudal neural tube patterning"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0008013 "beta-catenin binding" evidence=IEA]
[GO:0007493 "endodermal cell fate determination" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0003705 "RNA
polymerase II distal enhancer sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003308 "negative
regulation of Wnt receptor signaling pathway involved in heart
development" evidence=IEA] [GO:0003151 "outflow tract
morphogenesis" evidence=IEA] [GO:0003142 "cardiogenic plate
morphogenesis" evidence=IEA] [GO:0001947 "heart looping"
evidence=IEA] [GO:0001828 "inner cell mass cellular morphogenesis"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001525 "angiogenesis" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0050821
GO:GO:0030308 GO:GO:0043565 GO:GO:0045597 GO:GO:0045944
GO:GO:0007283 GO:GO:0001525 GO:GO:0005667 GO:GO:0003705
GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0003713 GO:GO:0001570
GO:GO:0090090 GO:GO:0001947 GO:GO:0045732 GO:GO:0042074
GO:GO:0003151 GO:GO:0060070 GO:GO:0048617 GO:GO:0021903
GO:GO:0003308 GO:GO:0031648 GO:GO:0048568 GO:GO:0023019
GO:GO:0048643 GO:GO:2000035 GO:GO:0042662 GO:GO:0072001
GO:GO:0007493 GO:GO:0072091 GO:GO:0061031 GO:GO:0061009
GO:GO:0061010 GO:GO:0060913 GO:GO:0060956 GO:GO:0060214 KO:K04495
InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
GeneTree:ENSGT00670000097649 OMA:ALPCRDG GO:GO:0003142
GO:GO:0001828 GO:GO:2000043 GO:GO:0060807 GO:GO:0048866
EMBL:CU463866 RefSeq:XP_001928411.1 Ensembl:ENSSSCT00000006855
GeneID:100154087 KEGG:ssc:100154087 Uniprot:F1RSI1
Length = 407
Score = 118 (46.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 23/71 (32%), Positives = 46/71 (64%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF V+ ++ R++ + +P + A + K G+ WK+++ A+K P+V +AE+ +V+
Sbjct: 69 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQ 127
Query: 99 YEKDMKNYNRR 109
+ +D NY R
Sbjct: 128 HMQDHPNYKYR 138
>UNIPROTKB|F1N1F9 [details] [associations]
symbol:SOX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000043 "regulation of cardiac cell fate specification"
evidence=IEA] [GO:2000035 "regulation of stem cell division"
evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA] [GO:0072091 "regulation
of stem cell proliferation" evidence=IEA] [GO:0072001 "renal system
development" evidence=IEA] [GO:0061031 "endodermal digestive tract
morphogenesis" evidence=IEA] [GO:0061010 "gall bladder development"
evidence=IEA] [GO:0061009 "common bile duct development"
evidence=IEA] [GO:0060956 "endocardial cell differentiation"
evidence=IEA] [GO:0060913 "cardiac cell fate determination"
evidence=IEA] [GO:0060807 "regulation of transcription from RNA
polymerase II promoter involved in definitive endodermal cell fate
specification" evidence=IEA] [GO:0060214 "endocardium formation"
evidence=IEA] [GO:0060070 "canonical Wnt receptor signaling
pathway" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] [GO:0048866 "stem cell fate specification"
evidence=IEA] [GO:0048643 "positive regulation of skeletal muscle
tissue development" evidence=IEA] [GO:0048617 "embryonic foregut
morphogenesis" evidence=IEA] [GO:0048568 "embryonic organ
development" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045732 "positive regulation of protein catabolic process"
evidence=IEA] [GO:0045597 "positive regulation of cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0042662 "negative
regulation of mesodermal cell fate specification" evidence=IEA]
[GO:0042074 "cell migration involved in gastrulation" evidence=IEA]
[GO:0031648 "protein destabilization" evidence=IEA] [GO:0030308
"negative regulation of cell growth" evidence=IEA] [GO:0023019
"signal transduction involved in regulation of gene expression"
evidence=IEA] [GO:0021903 "rostrocaudal neural tube patterning"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0008013 "beta-catenin binding" evidence=IEA]
[GO:0007493 "endodermal cell fate determination" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0003705 "RNA
polymerase II distal enhancer sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003308 "negative
regulation of Wnt receptor signaling pathway involved in heart
development" evidence=IEA] [GO:0003151 "outflow tract
morphogenesis" evidence=IEA] [GO:0003142 "cardiogenic plate
morphogenesis" evidence=IEA] [GO:0001947 "heart looping"
evidence=IEA] [GO:0001828 "inner cell mass cellular morphogenesis"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001525 "angiogenesis" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0050821
GO:GO:0030308 GO:GO:0043565 GO:GO:0045597 GO:GO:0045944
GO:GO:0007283 GO:GO:0001525 GO:GO:0005667 GO:GO:0003705
GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0003713 GO:GO:0001570
GO:GO:0090090 GO:GO:0001947 GO:GO:0045732 GO:GO:0042074
GO:GO:0003151 GO:GO:0060070 GO:GO:0048617 GO:GO:0021903
GO:GO:0003308 GO:GO:0031648 GO:GO:0048568 GO:GO:0023019
GO:GO:0048643 GO:GO:2000035 GO:GO:0042662 GO:GO:0072001
GO:GO:0007493 GO:GO:0072091 GO:GO:0061031 GO:GO:0061009
GO:GO:0061010 GO:GO:0060913 GO:GO:0060956 GO:GO:0060214 KO:K04495
InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
GeneTree:ENSGT00670000097649 CTD:64321 OMA:ALPCRDG GO:GO:0003142
GO:GO:0001828 GO:GO:2000043 GO:GO:0060807 GO:GO:0048866
EMBL:DAAA02038302 IPI:IPI00687993 RefSeq:NP_001193180.1
UniGene:Bt.112292 Ensembl:ENSBTAT00000007553 GeneID:534010
KEGG:bta:534010 NextBio:20876231 Uniprot:F1N1F9
Length = 410
Score = 118 (46.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 23/71 (32%), Positives = 46/71 (64%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF V+ ++ R++ + +P + A + K G+ WK+++ A+K P+V +AE+ +V+
Sbjct: 69 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQ 127
Query: 99 YEKDMKNYNRR 109
+ +D NY R
Sbjct: 128 HMQDHPNYKYR 138
>FB|FBgn0029123 [details] [associations]
symbol:SoxN "SoxNeuro" species:7227 "Drosophila melanogaster"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003705 "RNA polymerase II distal enhancer sequence-specific
DNA binding transcription factor activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0031490 "chromatin DNA binding" evidence=IDA]
[GO:0030111 "regulation of Wnt receptor signaling pathway"
evidence=IMP] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0007411 EMBL:AE014134 GO:GO:0030111 GO:GO:0045944
GO:GO:0007417 GO:GO:0003705 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031490
GeneTree:ENSGT00690000101940 ChiTaRS:QSOX2 HSSP:P48432 KO:K09267
FlyBase:FBgn0029123 EMBL:BT001514 RefSeq:NP_524735.1
UniGene:Dm.3272 SMR:Q9VLH8 STRING:Q9VLH8 EnsemblMetazoa:FBtr0079733
GeneID:44275 KEGG:dme:Dmel_CG18024 UCSC:CG18024-RA CTD:44275
InParanoid:Q9VLH8 OMA:HMSAHIA GenomeRNAi:44275 NextBio:837102
Uniprot:Q9VLH8
Length = 572
Score = 120 (47.3 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++ KRP +AF V+ R + D+PK + + + K G +WK +SE++K P++ +A++
Sbjct: 177 DRVKRPMNAFMVWSRGQRRKMASDNPKMHN-SEISKRLGAQWKDLSESEKRPFIDEAKRL 235
Query: 96 KVEYEKDMKNYNRRQAEGTK 115
+ + K+ +Y R TK
Sbjct: 236 RAVHMKEHPDYKYRPRRKTK 255
>ZFIN|ZDB-GENE-011207-1 [details] [associations]
symbol:sox10 "SRY-box containing gene 10"
species:7955 "Danio rerio" [GO:0014044 "Schwann cell development"
evidence=IMP] [GO:0048840 "otolith development" evidence=IMP]
[GO:0048839 "inner ear development" evidence=IGI;IMP] [GO:0048752
"semicircular canal morphogenesis" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IGI] [GO:0001755
"neural crest cell migration" evidence=IMP] [GO:0048484 "enteric
nervous system development" evidence=IMP] [GO:0010001 "glial cell
differentiation" evidence=IGI] [GO:0071600 "otic vesicle
morphogenesis" evidence=IMP] [GO:0030318 "melanocyte
differentiation" evidence=IGI] [GO:0048709 "oligodendrocyte
differentiation" evidence=IMP] [GO:0014037 "Schwann cell
differentiation" evidence=IMP] [GO:0050768 "negative regulation of
neurogenesis" evidence=IMP] InterPro:IPR009071 Pfam:PF00505
ZFIN:ZDB-GENE-011207-1 GO:GO:0001755 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0010628
GO:GO:0014044 GO:GO:0030318 GO:GO:0048709 GO:GO:0050768
GO:GO:0048484 GO:GO:0048840 GO:GO:0048752 GO:GO:0071600 CTD:6663
GeneTree:ENSGT00670000097649 HOGENOM:HOG000108876
HOVERGEN:HBG002061 KO:K09270 OMA:GPSMASD InterPro:IPR022151
Pfam:PF12444 HSSP:P48432 EMBL:CU695115 EMBL:BC163868 EMBL:BC163883
EMBL:AF402677 IPI:IPI00512024 RefSeq:NP_571950.1 UniGene:Dr.83682
SMR:Q90XD1 STRING:Q90XD1 Ensembl:ENSDART00000112979 GeneID:140616
KEGG:dre:140616 NextBio:20797027 Uniprot:Q90XD1
Length = 485
Score = 119 (46.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 36 NKP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
+KP KRP +AF V+ + R + +P + A + K G+ W+ ++E DK P++ +AE
Sbjct: 104 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNETDKRPFIEEAE 162
Query: 94 KRKVEYEKDMKNYN---RRQAEGTKP 116
+ + +++KD Y RR+ G KP
Sbjct: 163 RLRKQHKKDYPEYKYQPRRRKNG-KP 187
>UNIPROTKB|Q9H6I2 [details] [associations]
symbol:SOX17 "Transcription factor SOX-17" species:9606
"Homo sapiens" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0001828 "inner
cell mass cellular morphogenesis" evidence=IEA] [GO:0003308
"negative regulation of Wnt receptor signaling pathway involved in
heart development" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007493 "endodermal cell fate determination"
evidence=IEA] [GO:0021903 "rostrocaudal neural tube patterning"
evidence=IEA] [GO:0023019 "signal transduction involved in
regulation of gene expression" evidence=IEA] [GO:0042074 "cell
migration involved in gastrulation" evidence=IEA] [GO:0042662
"negative regulation of mesodermal cell fate specification"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045597 "positive regulation of cell
differentiation" evidence=IEA] [GO:0045732 "positive regulation of
protein catabolic process" evidence=IEA] [GO:0048568 "embryonic
organ development" evidence=IEA] [GO:0048643 "positive regulation
of skeletal muscle tissue development" evidence=IEA] [GO:0048866
"stem cell fate specification" evidence=IEA] [GO:0060070 "canonical
Wnt receptor signaling pathway" evidence=IEA] [GO:0061009 "common
bile duct development" evidence=IEA] [GO:0061010 "gall bladder
development" evidence=IEA] [GO:0072091 "regulation of stem cell
proliferation" evidence=IEA] [GO:2000035 "regulation of stem cell
division" evidence=IEA] [GO:2000043 "regulation of cardiac cell
fate specification" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0001706 "endoderm formation" evidence=IDA]
[GO:0001947 "heart looping" evidence=ISS] [GO:0045995 "regulation
of embryonic development" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0008013
"beta-catenin binding" evidence=IPI] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0031648 "protein destabilization"
evidence=IMP] [GO:0050821 "protein stabilization" evidence=IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0042789 "mRNA
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003151 "outflow tract morphogenesis" evidence=ISS] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISS]
[GO:0003705 "RNA polymerase II distal enhancer sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0060956 "endocardial cell differentiation" evidence=ISS]
[GO:0060214 "endocardium formation" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0035050 "embryonic heart tube development" evidence=ISS]
[GO:0001570 "vasculogenesis" evidence=ISS] [GO:0001525
"angiogenesis" evidence=ISS] [GO:0005667 "transcription factor
complex" evidence=IDA] [GO:0060914 "heart formation" evidence=TAS]
[GO:0060913 "cardiac cell fate determination" evidence=IMP]
[GO:0061031 "endodermal digestive tract morphogenesis"
evidence=ISS] [GO:0060807 "regulation of transcription from RNA
polymerase II promoter involved in definitive endodermal cell fate
specification" evidence=ISS] [GO:0048617 "embryonic foregut
morphogenesis" evidence=ISS] [GO:0003143 "embryonic heart tube
morphogenesis" evidence=ISS] [GO:0003142 "cardiogenic plate
morphogenesis" evidence=ISS] [GO:0072001 "renal system development"
evidence=IMP] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IMP] [GO:0030308 "negative
regulation of cell growth" evidence=IMP] InterPro:IPR009071
Pfam:PF00505 GO:GO:0050821 GO:GO:0030308 GO:GO:0043565
GO:GO:0045597 GO:GO:0045944 GO:GO:0007283 GO:GO:0001525
GO:GO:0005667 GO:GO:0003705 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0003713 GO:GO:0001570 GO:GO:0090090 GO:GO:0001947
GO:GO:0045732 GO:GO:0042074 GO:GO:0003151 GO:GO:0060070
GO:GO:0060914 GO:GO:0042789 GO:GO:0048617 GO:GO:0021903
GO:GO:0003308 GO:GO:0031648 GO:GO:0048568 GO:GO:0023019
GO:GO:0045995 GO:GO:0048643 GO:GO:2000035 GO:GO:0042662
GO:GO:0072001 GO:GO:0007493 GO:GO:0072091 GO:GO:0061031
GO:GO:0061009 GO:GO:0061010 GO:GO:0060913 GO:GO:0060956
GO:GO:0060214 eggNOG:NOG242943 Orphanet:289365 KO:K04495
InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 EMBL:AB073988
EMBL:AK025905 IPI:IPI00007874 RefSeq:NP_071899.1 UniGene:Hs.98367
PDB:2YUL PDB:4A3N PDBsum:2YUL PDBsum:4A3N ProteinModelPortal:Q9H6I2
SMR:Q9H6I2 STRING:Q9H6I2 PhosphoSite:Q9H6I2 DMDM:23822216
PRIDE:Q9H6I2 DNASU:64321 Ensembl:ENST00000297316 GeneID:64321
KEGG:hsa:64321 UCSC:uc003xsb.4 CTD:64321 GeneCards:GC08P055370
H-InvDB:HIX0034521 HGNC:HGNC:18122 HPA:CAB025594 MIM:610928
MIM:613674 neXtProt:NX_Q9H6I2 PharmGKB:PA38296 HOGENOM:HOG000069999
HOVERGEN:HBG000517 InParanoid:Q9H6I2 OMA:ALPCRDG OrthoDB:EOG4KD6M5
PhylomeDB:Q9H6I2 EvolutionaryTrace:Q9H6I2 GenomeRNAi:64321
NextBio:66237 ArrayExpress:Q9H6I2 Bgee:Q9H6I2 CleanEx:HS_SOX17
Genevestigator:Q9H6I2 GermOnline:ENSG00000164736 GO:GO:0003142
GO:GO:0001828 GO:GO:2000043 GO:GO:0060807 GO:GO:0048866
Uniprot:Q9H6I2
Length = 414
Score = 118 (46.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/71 (32%), Positives = 46/71 (64%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF V+ ++ R++ + +P + A + K G+ WK+++ A+K P+V +AE+ +V+
Sbjct: 69 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQ 127
Query: 99 YEKDMKNYNRR 109
+ +D NY R
Sbjct: 128 HMQDHPNYKYR 138
>MGI|MGI:107543 [details] [associations]
symbol:Sox17 "SRY-box containing gene 17" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP] [GO:0001525
"angiogenesis" evidence=IGI] [GO:0001570 "vasculogenesis"
evidence=IGI] [GO:0001706 "endoderm formation" evidence=ISO]
[GO:0001828 "inner cell mass cellular morphogenesis" evidence=IMP]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003142 "cardiogenic
plate morphogenesis" evidence=IMP] [GO:0003143 "embryonic heart
tube morphogenesis" evidence=IMP] [GO:0003151 "outflow tract
morphogenesis" evidence=IGI] [GO:0003308 "negative regulation of
Wnt receptor signaling pathway involved in heart development"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003705 "RNA polymerase II distal enhancer
sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667 "transcription
factor complex" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0007492 "endoderm development" evidence=IMP]
[GO:0007493 "endodermal cell fate determination" evidence=IDA]
[GO:0008013 "beta-catenin binding" evidence=ISO] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=IMP] [GO:0016055 "Wnt
receptor signaling pathway" evidence=IEA] [GO:0021903 "rostrocaudal
neural tube patterning" evidence=IMP] [GO:0023019 "signal
transduction involved in regulation of gene expression"
evidence=IDA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=IDA;IMP] [GO:0030308 "negative
regulation of cell growth" evidence=ISO] [GO:0031648 "protein
destabilization" evidence=ISO] [GO:0035050 "embryonic heart tube
development" evidence=IGI] [GO:0042074 "cell migration involved in
gastrulation" evidence=IMP] [GO:0042661 "regulation of mesodermal
cell fate specification" evidence=IMP] [GO:0042662 "negative
regulation of mesodermal cell fate specification" evidence=IMP]
[GO:0042789 "mRNA transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0045595 "regulation of cell
differentiation" evidence=IMP] [GO:0045597 "positive regulation of
cell differentiation" evidence=IMP;IDA] [GO:0045732 "positive
regulation of protein catabolic process" evidence=IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;IDA] [GO:0045995 "regulation
of embryonic development" evidence=IMP] [GO:0048568 "embryonic
organ development" evidence=IMP] [GO:0048617 "embryonic foregut
morphogenesis" evidence=IMP] [GO:0048643 "positive regulation of
skeletal muscle tissue development" evidence=IDA] [GO:0048863 "stem
cell differentiation" evidence=IMP] [GO:0048866 "stem cell fate
specification" evidence=IDA] [GO:0050821 "protein stabilization"
evidence=ISO] [GO:0060070 "canonical Wnt receptor signaling
pathway" evidence=IDA] [GO:0060214 "endocardium formation"
evidence=IGI] [GO:0060807 "regulation of transcription from RNA
polymerase II promoter involved in definitive endodermal cell fate
specification" evidence=IMP] [GO:0060913 "cardiac cell fate
determination" evidence=ISO] [GO:0060956 "endocardial cell
differentiation" evidence=IGI] [GO:0061009 "common bile duct
development" evidence=IMP] [GO:0061010 "gall bladder development"
evidence=IMP] [GO:0061031 "endodermal digestive tract
morphogenesis" evidence=IMP] [GO:0072001 "renal system development"
evidence=ISO] [GO:0072091 "regulation of stem cell proliferation"
evidence=IDA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=ISO] [GO:2000035 "regulation
of stem cell division" evidence=IMP] [GO:2000043 "regulation of
cardiac cell fate specification" evidence=IMP] InterPro:IPR009071
MGI:MGI:107543 Pfam:PF00505 GO:GO:0005634 GO:GO:0050821
GO:GO:0030308 GO:GO:0043565 GO:GO:0045597 GO:GO:0045944
GO:GO:0007283 GO:GO:0001525 GO:GO:0005667 GO:GO:0003705
GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0003713 GO:GO:0001570
GO:GO:0090090 GO:GO:0001947 GO:GO:0045732 GO:GO:0042074
GO:GO:0003151 GO:GO:0060070 GO:GO:0048617 GO:GO:0021903
GO:GO:0003308 GO:GO:0031648 GO:GO:0048568 GO:GO:0023019
GO:GO:0048643 GO:GO:2000035 GO:GO:0042662 GO:GO:0072001
GO:GO:0007493 GO:GO:0072091 GO:GO:0061031 GO:GO:0061009
GO:GO:0061010 GO:GO:0060913 GO:GO:0060956 GO:GO:0060214
eggNOG:NOG242943 KO:K04495 InterPro:IPR021934 Pfam:PF12067
PROSITE:PS51516 GeneTree:ENSGT00670000097649 CTD:64321
HOGENOM:HOG000069999 HOVERGEN:HBG000517 OMA:ALPCRDG
OrthoDB:EOG4KD6M5 GO:GO:0003142 GO:GO:0001828 GO:GO:2000043
GO:GO:0060807 GO:GO:0048866 EMBL:D49474 EMBL:D49473 EMBL:AK004781
EMBL:L29085 IPI:IPI00121298 IPI:IPI00230012 RefSeq:NP_035571.1
UniGene:Mm.279103 PDB:3F27 PDBsum:3F27 ProteinModelPortal:Q61473
SMR:Q61473 STRING:Q61473 PhosphoSite:Q61473 PRIDE:Q61473
DNASU:20671 Ensembl:ENSMUST00000027035 Ensembl:ENSMUST00000116652
GeneID:20671 KEGG:mmu:20671 UCSC:uc007aey.1 UCSC:uc007afb.1
InParanoid:Q61473 NextBio:299151 Bgee:Q61473 CleanEx:MM_SOX17
Genevestigator:Q61473 GermOnline:ENSMUSG00000025902 Uniprot:Q61473
Length = 419
Score = 118 (46.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/71 (32%), Positives = 46/71 (64%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF V+ ++ R++ + +P + A + K G+ WK+++ A+K P+V +AE+ +V+
Sbjct: 69 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQ 127
Query: 99 YEKDMKNYNRR 109
+ +D NY R
Sbjct: 128 HMQDHPNYKYR 138
>RGD|1305371 [details] [associations]
symbol:Sox17 "SRY (sex determining region Y)-box 17"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0001525 "angiogenesis" evidence=IEA;ISO] [GO:0001570
"vasculogenesis" evidence=IEA;ISO] [GO:0001706 "endoderm formation"
evidence=ISO] [GO:0001828 "inner cell mass cellular morphogenesis"
evidence=IEA;ISO] [GO:0001947 "heart looping" evidence=IEA;ISO]
[GO:0003142 "cardiogenic plate morphogenesis" evidence=IEA;ISO]
[GO:0003143 "embryonic heart tube morphogenesis" evidence=ISO]
[GO:0003151 "outflow tract morphogenesis" evidence=IEA;ISO]
[GO:0003308 "negative regulation of Wnt receptor signaling pathway
involved in heart development" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0003705 "RNA
polymerase II distal enhancer sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0003713
"transcription coactivator activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=IEA;ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=IEA;ISO] [GO:0007369 "gastrulation" evidence=ISO]
[GO:0007492 "endoderm development" evidence=ISO] [GO:0007493
"endodermal cell fate determination" evidence=IEA;ISO] [GO:0008013
"beta-catenin binding" evidence=IEA;ISO] [GO:0008134 "transcription
factor binding" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] [GO:0021903 "rostrocaudal neural tube patterning"
evidence=IEA;ISO] [GO:0023019 "signal transduction involved in
regulation of gene expression" evidence=IEA;ISO] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=IEA;ISO] [GO:0031648 "protein destabilization"
evidence=IEA;ISO] [GO:0035050 "embryonic heart tube development"
evidence=ISO] [GO:0042074 "cell migration involved in gastrulation"
evidence=IEA;ISO] [GO:0042661 "regulation of mesodermal cell fate
specification" evidence=ISO] [GO:0042662 "negative regulation of
mesodermal cell fate specification" evidence=IEA;ISO] [GO:0042789
"mRNA transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA;ISO] [GO:0045595 "regulation of cell differentiation"
evidence=ISO] [GO:0045597 "positive regulation of cell
differentiation" evidence=IEA;ISO] [GO:0045732 "positive regulation
of protein catabolic process" evidence=IEA;ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0045995 "regulation
of embryonic development" evidence=ISO] [GO:0048568 "embryonic
organ development" evidence=IEA;ISO] [GO:0048617 "embryonic foregut
morphogenesis" evidence=IEA;ISO] [GO:0048643 "positive regulation
of skeletal muscle tissue development" evidence=IEA;ISO]
[GO:0048863 "stem cell differentiation" evidence=ISO] [GO:0048866
"stem cell fate specification" evidence=IEA;ISO] [GO:0050821
"protein stabilization" evidence=IEA;ISO] [GO:0060070 "canonical
Wnt receptor signaling pathway" evidence=IEA;ISO] [GO:0060214
"endocardium formation" evidence=IEA;ISO] [GO:0060807 "regulation
of transcription from RNA polymerase II promoter involved in
definitive endodermal cell fate specification" evidence=IEA;ISO]
[GO:0060913 "cardiac cell fate determination" evidence=IEA;ISO]
[GO:0060956 "endocardial cell differentiation" evidence=IEA;ISO]
[GO:0061009 "common bile duct development" evidence=IEA;ISO]
[GO:0061010 "gall bladder development" evidence=IEA;ISO]
[GO:0061031 "endodermal digestive tract morphogenesis"
evidence=IEA;ISO] [GO:0072001 "renal system development"
evidence=IEA;ISO] [GO:0072091 "regulation of stem cell
proliferation" evidence=IEA;ISO] [GO:0090090 "negative regulation
of canonical Wnt receptor signaling pathway" evidence=IEA;ISO]
[GO:2000035 "regulation of stem cell division" evidence=IEA;ISO]
[GO:2000043 "regulation of cardiac cell fate specification"
evidence=IEA;ISO] InterPro:IPR009071 Pfam:PF00505 RGD:1305371
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:CH473984 KO:K04495 InterPro:IPR021934 Pfam:PF12067
PROSITE:PS51516 GeneTree:ENSGT00670000097649 CTD:64321 OMA:ALPCRDG
RefSeq:NP_001101372.1 UniGene:Rn.7884 Ensembl:ENSRNOT00000033116
GeneID:312936 KEGG:rno:312936 NextBio:665393 Uniprot:G3V923
Length = 423
Score = 118 (46.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/71 (32%), Positives = 46/71 (64%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF V+ ++ R++ + +P + A + K G+ WK+++ A+K P+V +AE+ +V+
Sbjct: 69 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQ 127
Query: 99 YEKDMKNYNRR 109
+ +D NY R
Sbjct: 128 HMQDHPNYKYR 138
>UNIPROTKB|O60248 [details] [associations]
symbol:SOX15 "Protein SOX-15" species:9606 "Homo sapiens"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0043403 "skeletal muscle tissue
regeneration" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006325 "chromatin
organization" evidence=NAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=NAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0008584 "male gonad development" evidence=TAS]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0014718 "positive
regulation of satellite cell activation involved in skeletal muscle
regeneration" evidence=ISS] [GO:0045843 "negative regulation of
striated muscle tissue development" evidence=ISS] [GO:0048627
"myoblast development" evidence=ISS] [GO:2000288 "positive
regulation of myoblast proliferation" evidence=ISS] [GO:0030154
"cell differentiation" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0070318 "positive regulation of G0 to G1
transition" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0005737 EMBL:CH471108 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 GO:GO:0003682 GO:GO:0008584
GO:GO:0045843 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006325 GO:GO:0014718
GO:GO:0070318 GO:GO:0043403 GO:GO:2000288 GO:GO:0048627
CleanEx:HS_SOX12 HOGENOM:HOG000231647 CTD:6665 EMBL:AB006867
EMBL:BC000985 EMBL:BC072003 EMBL:X73039 EMBL:AJ006222 EMBL:AB025355
IPI:IPI00028451 PIR:S34119 RefSeq:NP_008873.1 UniGene:Hs.95582
ProteinModelPortal:O60248 SMR:O60248 STRING:O60248
PhosphoSite:O60248 PRIDE:O60248 DNASU:6665 Ensembl:ENST00000250055
Ensembl:ENST00000538513 GeneID:6665 KEGG:hsa:6665 UCSC:uc002ghy.1
GeneCards:GC17M007491 HGNC:HGNC:11196 MIM:601297 neXtProt:NX_O60248
PharmGKB:PA36033 eggNOG:NOG311451 HOVERGEN:HBG055512
InParanoid:O60248 KO:K09271 OMA:PQSDPRL OrthoDB:EOG40K80Q
PhylomeDB:O60248 GenomeRNAi:6665 NextBio:25987 ArrayExpress:O60248
Bgee:O60248 CleanEx:HS_SOX15 Genevestigator:O60248
GermOnline:ENSG00000129194 Uniprot:O60248
Length = 233
Score = 113 (44.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KRP +AF V+ R Q + +PK + + + K G +WK + E +K P+V +A++ +
Sbjct: 48 KVKRPMNAFMVWSSAQRRQMAQQNPKMHN-SEISKRLGAQWKLLDEDEKRPFVEEAKRLR 106
Query: 97 VEYEKDMKNYN---RRQAEGT 114
+ +D +Y RR+A+ +
Sbjct: 107 ARHLRDYPDYKYRPRRKAKSS 127
>UNIPROTKB|P41225 [details] [associations]
symbol:SOX3 "Transcription factor SOX-3" species:9606 "Homo
sapiens" [GO:0009887 "organ morphogenesis" evidence=IEA]
[GO:0048515 "spermatid differentiation" evidence=IEA] [GO:0060009
"Sertoli cell development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=ISS] [GO:0060324 "face development"
evidence=ISS] [GO:0007423 "sensory organ development" evidence=ISS]
[GO:0021983 "pituitary gland development" evidence=ISS] [GO:0021854
"hypothalamus development" evidence=ISS] [GO:0007530 "sex
determination" evidence=IMP] [GO:0000979 "RNA polymerase II core
promoter sequence-specific DNA binding" evidence=ISS] [GO:0001106
"RNA polymerase II transcription corepressor activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=TAS] [GO:0007417
"central nervous system development" evidence=TAS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007423
GO:GO:0045665 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0009887 GO:GO:0060009 GO:GO:0060324
GO:GO:0021983 GO:GO:0000979 GO:GO:0001106 GO:GO:0021854
GO:GO:0048515 eggNOG:NOG321816 GO:GO:0007530 Orphanet:3157
Orphanet:90695 HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097
Pfam:PF12336 HOVERGEN:HBG105663 CTD:6658 EMBL:X71135 EMBL:AF264713
EMBL:AL121875 EMBL:BC093863 EMBL:BC093865 EMBL:X65665
IPI:IPI00240510 PIR:I38239 PIR:S22942 RefSeq:NP_005625.2
UniGene:Hs.157429 ProteinModelPortal:P41225 SMR:P41225
STRING:P41225 PhosphoSite:P41225 DMDM:48429228 PRIDE:P41225
Ensembl:ENST00000370536 GeneID:6658 KEGG:hsa:6658 UCSC:uc004fbd.1
GeneCards:GC0XM139585 HGNC:HGNC:11199 MIM:300123 MIM:300833
MIM:312000 MIM:313430 neXtProt:NX_P41225 Orphanet:79495
Orphanet:67045 PharmGKB:PA36036 InParanoid:P41225 OMA:AQSYMNV
PhylomeDB:P41225 GenomeRNAi:6658 NextBio:25955 Bgee:P41225
CleanEx:HS_SOX3 Genevestigator:P41225 GermOnline:ENSG00000134595
Uniprot:P41225
Length = 446
Score = 118 (46.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 28/113 (24%), Positives = 53/113 (46%)
Query: 3 GGKSKSDTRNAKLSVNXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREQYKKDHPK 62
GG KS A + + D ++ KRP +AF V+ R + ++PK
Sbjct: 104 GGAGKSSANAAGGANSGGGSSGGASGGGGGTDQDRVKRPMNAFMVWSRGQRRKMALENPK 163
Query: 63 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
+ + + K G WK +++A+K P++ +A++ + + K+ +Y R TK
Sbjct: 164 MHN-SEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRRKTK 215
>ZFIN|ZDB-GENE-980526-333 [details] [associations]
symbol:sox3 "SRY-box containing gene 3"
species:7955 "Danio rerio" [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0043049 "otic
placode formation" evidence=IGI;IMP] [GO:0007422 "peripheral
nervous system development" evidence=IGI;IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030182 "neuron differentiation" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-980526-333
GO:GO:0005634 GO:GO:0051091 GO:GO:0030182 GO:GO:0003677
GO:GO:0007422 GO:GO:0007417 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 eggNOG:NOG321816
GeneTree:ENSGT00690000101940 OrthoDB:EOG45MN6C GO:GO:0043049
HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 CTD:6658 EMBL:AY316135 EMBL:AB242330
EMBL:AB117960 EMBL:BX088596 EMBL:BC092845 IPI:IPI00551951
RefSeq:NP_001001811.2 UniGene:Dr.104569 ProteinModelPortal:Q6EJB7
SMR:Q6EJB7 STRING:Q6EJB7 Ensembl:ENSDART00000075617 GeneID:30529
KEGG:dre:30529 InParanoid:Q6EJB7 OMA:NNSANDP NextBio:20806912
ArrayExpress:Q6EJB7 Bgee:Q6EJB7 Uniprot:Q6EJB7
Length = 300
Score = 115 (45.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 23/82 (28%), Positives = 47/82 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D ++ KRP +AF V+ R + +++PK + + + K G WK +++A+K P++ +A+
Sbjct: 31 DQDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGADWKLLTDAEKRPFIDEAK 89
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ + + K+ +Y R TK
Sbjct: 90 RLRAMHMKEHPDYKYRPRRKTK 111
>UNIPROTKB|F1NFP0 [details] [associations]
symbol:SOX7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003705 "RNA polymerase II distal enhancer
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0044212 "transcription regulatory region
DNA binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893
GO:GO:0043565 GO:GO:0003705 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 InterPro:IPR021934
Pfam:PF12067 PROSITE:PS51516 GeneTree:ENSGT00670000097649
OMA:ECPALEA EMBL:AADN02018316 IPI:IPI00684202
Ensembl:ENSGALT00000026870 Uniprot:F1NFP0
Length = 397
Score = 117 (46.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF V+ ++ R++ +P + A + K G+ WK++S + K PYV +AE+ +V+
Sbjct: 62 RRPMNAFMVWAKDERKRLAVQNPDLHN-AELSKMLGKSWKALSLSQKRPYVEEAERLRVK 120
Query: 99 YEKDMKNYNRR 109
+ +D NY R
Sbjct: 121 HMQDYPNYKYR 131
>RGD|620682 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=ISO;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IMP;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006264
"mitochondrial DNA replication" evidence=TAS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISO;IMP;TAS]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=ISO;ISS] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0031072 "heat shock protein binding"
evidence=IPI] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IEA;ISO] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO;ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0070363
"mitochondrial light strand promoter sense binding"
evidence=ISO;ISS] InterPro:IPR009071 Pfam:PF00505 RGD:620682
GO:GO:0005634 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
GO:GO:0006264 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D GeneTree:ENSGT00440000039001
EMBL:AB014089 EMBL:AJ312746 EMBL:AF377866 EMBL:BC062022
IPI:IPI00327334 RefSeq:NP_112616.1 UniGene:Rn.18266
ProteinModelPortal:Q91ZW1 STRING:Q91ZW1 PRIDE:Q91ZW1
Ensembl:ENSRNOT00000000753 GeneID:83474 KEGG:rno:83474
UCSC:RGD:620682 InParanoid:Q91ZW1 NextBio:615889
ArrayExpress:Q91ZW1 Genevestigator:Q91ZW1
GermOnline:ENSRNOG00000000613 Uniprot:Q91ZW1
Length = 244
Score = 113 (44.8 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 23/76 (30%), Positives = 45/76 (59%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SA+ +++ E ++ K + + K + V +A WK++S +K Y+ A+ +
Sbjct: 153 KPKRPRSAYNIYVSESFQEAKDESAQGK-LKLVNQA----WKNLSHDEKQAYIQLAKDDR 207
Query: 97 VEYEKDMKNYNRRQAE 112
+ Y+ +MK++ + AE
Sbjct: 208 IRYDNEMKSWEEQMAE 223
>UNIPROTKB|E1BA21 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9913 "Bos taurus" [GO:0070363 "mitochondrial light strand
promoter sense binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=IEA] [GO:0033108
"mitochondrial respiratory chain complex assembly" evidence=IEA]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0042645 GO:GO:0033108 Pfam:PF09011 GO:GO:0006391
IPI:IPI00707168 UniGene:Bt.102328 GO:GO:0070363 OMA:YENEMKS
GeneTree:ENSGT00440000039001 EMBL:DAAA02062260 EMBL:DAAA02062261
Ensembl:ENSBTAT00000052511 Uniprot:E1BA21
Length = 246
Score = 113 (44.8 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SA+ +F+ E R Q +D + A+ E WK++S + K Y+ A+ K
Sbjct: 154 KPKRPRSAYNIFIAE-RFQEARDGTSQVKLKAIN----ENWKNLSNSQKQVYIQLAKDDK 208
Query: 97 VEYEKDMKNYNRRQAE 112
+ Y +MK++ + E
Sbjct: 209 IRYYNEMKSWEEQMME 224
>UNIPROTKB|Q0II87 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9913 "Bos taurus" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0006391 "transcription
initiation from mitochondrial promoter" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0070363 "mitochondrial light strand promoter sense binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0003700 GO:GO:0003682 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
Pfam:PF09011 GO:GO:0006391 EMBL:BC122754 IPI:IPI00707168
RefSeq:NP_001029188.2 UniGene:Bt.102328 ProteinModelPortal:Q0II87
STRING:Q0II87 PRIDE:Q0II87 GeneID:510059 KEGG:bta:510059 CTD:7019
eggNOG:NOG297801 HOGENOM:HOG000139423 HOVERGEN:HBG106674
InParanoid:Q0II87 KO:K11830 NextBio:20869256 GO:GO:0070363
Uniprot:Q0II87
Length = 246
Score = 113 (44.8 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SA+ +F+ E R Q +D + A+ E WK++S + K Y+ A+ K
Sbjct: 154 KPKRPRSAYNIFIAE-RFQEARDGTSQVKLKAIN----ENWKNLSNSQKQVYIQLAKDDK 208
Query: 97 VEYEKDMKNYNRRQAE 112
+ Y +MK++ + E
Sbjct: 209 IRYYNEMKSWEEQMME 224
>UNIPROTKB|Q68FA4 [details] [associations]
symbol:sox3 "Transcription factor Sox-3" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0001704 "formation of primary germ layer" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0008013 "beta-catenin binding" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 GO:GO:0051091 GO:GO:0030182 GO:GO:0043565
GO:GO:0007422 GO:GO:0007417 GO:GO:0003700 GO:GO:0006351
GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0008013 eggNOG:NOG321816
GeneTree:ENSGT00690000101940 OrthoDB:EOG45MN6C GO:GO:0043049
GO:GO:0001704 HSSP:P48432 HOGENOM:HOG000231647 KO:K09267
InterPro:IPR022097 Pfam:PF12336 HOVERGEN:HBG105663 CTD:6658
EMBL:BC079938 RefSeq:NP_001007502.1 UniGene:Str.27268
ProteinModelPortal:Q68FA4 SMR:Q68FA4 STRING:Q68FA4
Ensembl:ENSXETT00000016558 GeneID:493228 KEGG:xtr:493228
Xenbase:XB-GENE-484815 InParanoid:Q68FA4 OMA:PDPPAHR Bgee:Q68FA4
Uniprot:Q68FA4
Length = 307
Score = 115 (45.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D + KRP +AF V+ R + +++PK + + + K G WK +S+++K P++ +A+
Sbjct: 36 DQERVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGADWKLLSDSEKRPFIDEAK 94
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
+ + + K+ +Y R TK
Sbjct: 95 RLRAVHMKEYPDYKYRPRRKTK 116
>UNIPROTKB|F5H6J8 [details] [associations]
symbol:SRY "Sex-determining region Y protein" species:9606
"Homo sapiens" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0030238 "male sex
determination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007548 "sex differentiation"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR009071
InterPro:IPR017253 PIRSF:PIRSF037653 Pfam:PF00505 GO:GO:0043231
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007548 GO:GO:0030238
PANTHER:PTHR10270:SF48 HGNC:HGNC:11311 EMBL:AC006040
IPI:IPI01012788 ProteinModelPortal:F5H6J8 SMR:F5H6J8
Ensembl:ENST00000525526 ArrayExpress:F5H6J8 Bgee:F5H6J8
Uniprot:F5H6J8
Length = 197
Score = 110 (43.8 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++ KRP +AF V+ + R + ++P+ ++ + + K G +WK ++EA+K P+ +A+K
Sbjct: 58 DRVKRPMNAFIVWSRDQRRKMALENPRMRN-SEISKQLGYQWKMLTEAEKWPFFQEAQKL 116
Query: 96 KVEYEKDMKNYNRRQAEGTK 115
+ + + NY R K
Sbjct: 117 QAMHREKYPNYKYRPRRKAK 136
>WB|WBGene00004950 [details] [associations]
symbol:sox-3 species:6239 "Caenorhabditis elegans"
[GO:0003690 "double-stranded DNA binding" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0003690
GeneTree:ENSGT00690000101940 EMBL:Z69792 HSSP:P48432
eggNOG:NOG302715 KO:K09267 PIR:T22022 RefSeq:NP_510439.1
UniGene:Cel.1041 ProteinModelPortal:Q20201 SMR:Q20201
EnsemblMetazoa:F40E10.2 GeneID:185534 KEGG:cel:CELE_F40E10.2
UCSC:F40E10.2 CTD:185534 WormBase:F40E10.2 HOGENOM:HOG000018340
InParanoid:Q20201 OMA:KTSYDED NextBio:928610 Uniprot:Q20201
Length = 212
Score = 111 (44.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP +AF V+ R + +D+PK + + + K G +WK +SE +K P++ +A++ +
Sbjct: 49 KRPMNAFMVWSRGQRRKMAQDNPKMHN-SEISKRLGAEWKQLSEQEKRPFIDEAKRLRAL 107
Query: 99 YEKDMKNYNRR 109
+ K+ +Y R
Sbjct: 108 HMKEHPDYKYR 118
>UNIPROTKB|B4DPY8 [details] [associations]
symbol:TOX4 "cDNA FLJ54372, highly similar to Epidermal
Langerhans cell protein LCP1" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AL161747 EMBL:AE000658 HOVERGEN:HBG051013 UniGene:Hs.555910
HGNC:HGNC:20161 ChiTaRS:TOX4 EMBL:AK298555 IPI:IPI00879111
SMR:B4DPY8 STRING:B4DPY8 Ensembl:ENST00000448790 UCSC:uc010tlu.2
Uniprot:B4DPY8
Length = 598
Score = 119 (46.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+P++P SA+ +F + + K +P N + V K W S+ E K Y K E
Sbjct: 196 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 254
Query: 94 KRKVEYEKDMKNYNRRQ 110
K EY K + Y Q
Sbjct: 255 AAKKEYLKALAAYKDNQ 271
>UNIPROTKB|Q0P5K4 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9913 "Bos taurus" [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 EMBL:BC119929 IPI:IPI00689806
RefSeq:NP_001069175.1 UniGene:Bt.51979 ProteinModelPortal:Q0P5K4
SMR:Q0P5K4 Ensembl:ENSBTAT00000020149 GeneID:515314 KEGG:bta:515314
CTD:9878 HOVERGEN:HBG051013 InParanoid:Q0P5K4 OMA:PPTLKMQ
OrthoDB:EOG4JT05P NextBio:20871764 ArrayExpress:Q0P5K4
Uniprot:Q0P5K4
Length = 619
Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+P++P SA+ +F + + K +P N + V K W S+ E K Y K E
Sbjct: 219 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 277
Query: 94 KRKVEYEKDMKNYNRRQ 110
K EY K + Y Q
Sbjct: 278 AAKKEYLKALAAYKDNQ 294
>MGI|MGI:1915389 [details] [associations]
symbol:Tox4 "TOX high mobility group box family member 4"
species:10090 "Mus musculus" [GO:0000785 "chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO]
InterPro:IPR009071 MGI:MGI:1915389 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
GO:GO:0072357 eggNOG:NOG284736 CTD:9878 HOVERGEN:HBG051013
OMA:PPTLKMQ OrthoDB:EOG4JT05P ChiTaRS:TOX4 EMBL:AF228408
EMBL:AK019980 EMBL:AK088144 EMBL:AK147023 EMBL:AK147834
EMBL:BC050091 IPI:IPI00121251 RefSeq:NP_075923.2 UniGene:Mm.246237
ProteinModelPortal:Q8BU11 SMR:Q8BU11 IntAct:Q8BU11
PhosphoSite:Q8BU11 PaxDb:Q8BU11 PRIDE:Q8BU11
Ensembl:ENSMUST00000022766 GeneID:268741 KEGG:mmu:268741
InParanoid:Q3UGN7 NextBio:392465 Bgee:Q8BU11 CleanEx:MM_TOX4
Genevestigator:Q8BU11 GermOnline:ENSMUSG00000016831 Uniprot:Q8BU11
Length = 619
Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+P++P SA+ +F + + K +P N + V K W S+ E K Y K E
Sbjct: 219 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 277
Query: 94 KRKVEYEKDMKNYNRRQ 110
K EY K + Y Q
Sbjct: 278 AAKKEYLKALAAYKDNQ 294
>RGD|708449 [details] [associations]
symbol:Tox4 "TOX high mobility group box family member 4"
species:10116 "Rattus norvegicus" [GO:0000785 "chromatin"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0072357 "PTW/PP1
phosphatase complex" evidence=IEA;ISO;ISS] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR009071 Pfam:PF00505 RGD:708449
GO:GO:0005634 GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 HOVERGEN:HBG051013
OrthoDB:EOG4JT05P EMBL:AF267197 IPI:IPI00201166 UniGene:Rn.22195
ProteinModelPortal:Q99PM1 SMR:Q99PM1 PhosphoSite:Q99PM1
PRIDE:Q99PM1 UCSC:RGD:708449 InParanoid:Q99PM1 ArrayExpress:Q99PM1
Genevestigator:Q99PM1 GermOnline:ENSRNOG00000012844 Uniprot:Q99PM1
Length = 619
Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+P++P SA+ +F + + K +P N + V K W S+ E K Y K E
Sbjct: 219 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 277
Query: 94 KRKVEYEKDMKNYNRRQ 110
K EY K + Y Q
Sbjct: 278 AAKKEYLKALAAYKDNQ 294
>UNIPROTKB|I3LAV9 [details] [associations]
symbol:TOX4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000785 "chromatin"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
OMA:PPTLKMQ EMBL:CU695044 RefSeq:XP_001929153.1 UniGene:Ssc.97365
Ensembl:ENSSSCT00000027379 GeneID:100152681 KEGG:ssc:100152681
Uniprot:I3LAV9
Length = 620
Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+P++P SA+ +F + + K +P N + V K W S+ E K Y K E
Sbjct: 219 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 277
Query: 94 KRKVEYEKDMKNYNRRQ 110
K EY K + Y Q
Sbjct: 278 AAKKEYLKALAAYKDNQ 294
>UNIPROTKB|O94842 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000785 "chromatin"
evidence=IDA] [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 CTD:9878 HOVERGEN:HBG051013
OMA:PPTLKMQ OrthoDB:EOG4JT05P EMBL:AB018280 EMBL:BC013689
IPI:IPI00006586 RefSeq:NP_055643.1 UniGene:Hs.555910
ProteinModelPortal:O94842 SMR:O94842 IntAct:O94842
MINT:MINT-1193640 STRING:O94842 PhosphoSite:O94842 PaxDb:O94842
PeptideAtlas:O94842 PRIDE:O94842 DNASU:9878 Ensembl:ENST00000262709
Ensembl:ENST00000405508 GeneID:9878 KEGG:hsa:9878 UCSC:uc001way.3
GeneCards:GC14P021944 HGNC:HGNC:20161 HPA:HPA017880 HPA:HPA027551
MIM:614032 neXtProt:NX_O94842 PharmGKB:PA162406753
InParanoid:O94842 PhylomeDB:O94842 ChiTaRS:TOX4 GenomeRNAi:9878
NextBio:37229 ArrayExpress:O94842 Bgee:O94842 CleanEx:HS_TOX4
Genevestigator:O94842 GermOnline:ENSG00000092203 Uniprot:O94842
Length = 621
Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+P++P SA+ +F + + K +P N + V K W S+ E K Y K E
Sbjct: 219 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 277
Query: 94 KRKVEYEKDMKNYNRRQ 110
K EY K + Y Q
Sbjct: 278 AAKKEYLKALAAYKDNQ 294
>UNIPROTKB|Q5R6A9 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9601 "Pongo abelii" [GO:0072357 "PTW/PP1 phosphatase
complex" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357 HOGENOM:HOG000230949
HSSP:Q66JW3 CTD:9878 HOVERGEN:HBG051013 OrthoDB:EOG4JT05P
EMBL:CR860582 EMBL:CR861113 RefSeq:NP_001126876.1
RefSeq:NP_001128875.1 UniGene:Pab.18544 UniGene:Pab.19683
GeneID:100173889 GeneID:100189804 KEGG:pon:100173889
KEGG:pon:100189804 Uniprot:Q5R6A9
Length = 621
Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+P++P SA+ +F + + K +P N + V K W S+ E K Y K E
Sbjct: 219 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 277
Query: 94 KRKVEYEKDMKNYNRRQ 110
K EY K + Y Q
Sbjct: 278 AAKKEYLKALAAYKDNQ 294
>UNIPROTKB|B0ZTE1 [details] [associations]
symbol:sox21 "Transcription factor Sox-21" species:8355
"Xenopus laevis" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0007399 "nervous
system development" evidence=IEP] [GO:0043565 "sequence-specific
DNA binding" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0043565
GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 KO:K09267 InterPro:IPR022097
Pfam:PF12336 CTD:11166 EMBL:EU403424 RefSeq:NP_001165684.1
UniGene:Xl.85657 ProteinModelPortal:B0ZTE1 SMR:B0ZTE1
GeneID:100337612 KEGG:xla:100337612 Xenbase:XB-GENE-6464309
Uniprot:B0ZTE1
Length = 262
Score = 113 (44.8 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 22/71 (30%), Positives = 43/71 (60%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP +AF V+ R + +++PK + + + K G +WK ++EA+K P++ +A++ +
Sbjct: 9 KRPMNAFMVWSRAQRRKMAQENPKMHN-SEISKRLGAEWKLLTEAEKRPFIDEAKRLRAM 67
Query: 99 YEKDMKNYNRR 109
+ KD +Y R
Sbjct: 68 HMKDHPDYKYR 78
>UNIPROTKB|Q05066 [details] [associations]
symbol:SRY "Sex-determining region Y protein" species:9606
"Homo sapiens" [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0007548 "sex differentiation" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=IDA;NAS] [GO:0030238 "male sex determination"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0003705 "RNA
polymerase II distal enhancer sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:2000020 "positive
regulation of male gonad development" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR009071 InterPro:IPR017253
PIRSF:PIRSF037653 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0030154 GO:GO:0003677 GO:GO:0016607
GO:GO:0003705 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007548 Pathway_Interaction_DB:ar_tf_pathway
Orphanet:242 GO:GO:2000020 GO:GO:0030238 Orphanet:251510 PDB:2GZK
PDBsum:2GZK eggNOG:NOG130659 CTD:6736 HOVERGEN:HBG008712 KO:K09266
OMA:QSYASAM PANTHER:PTHR10270:SF48 EMBL:X53772 EMBL:L10101
EMBL:L10102 EMBL:L08063 EMBL:X96421 EMBL:S53156 EMBL:S56543
EMBL:BC074923 EMBL:BC074924 IPI:IPI00011568 PIR:A47533
RefSeq:NP_003131.1 UniGene:Hs.1992 PDB:1HRY PDB:1HRZ PDB:1J46
PDB:1J47 PDBsum:1HRY PDBsum:1HRZ PDBsum:1J46 PDBsum:1J47
ProteinModelPortal:Q05066 SMR:Q05066 IntAct:Q05066
MINT:MINT-1367278 STRING:Q05066 PhosphoSite:Q05066 DMDM:548983
PRIDE:Q05066 DNASU:6736 Ensembl:ENST00000383070 GeneID:6736
KEGG:hsa:6736 UCSC:uc004fqg.1 GeneCards:GC0YM002698 HGNC:HGNC:11311
HPA:HPA003959 MIM:400044 MIM:400045 MIM:480000 neXtProt:NX_Q05066
Orphanet:1772 Orphanet:393 Orphanet:983 PharmGKB:PA36135
HOGENOM:HOG000008601 InParanoid:Q05066 OrthoDB:EOG49079Z
PhylomeDB:Q05066 EvolutionaryTrace:Q05066 GenomeRNAi:6736
NextBio:26276 ArrayExpress:Q05066 Bgee:Q05066 CleanEx:HS_SRY
Genevestigator:Q05066 GermOnline:ENSG00000184895 Uniprot:Q05066
Length = 204
Score = 110 (43.8 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++ KRP +AF V+ + R + ++P+ ++ + + K G +WK ++EA+K P+ +A+K
Sbjct: 58 DRVKRPMNAFIVWSRDQRRKMALENPRMRN-SEISKQLGYQWKMLTEAEKWPFFQEAQKL 116
Query: 96 KVEYEKDMKNYNRRQAEGTK 115
+ + + NY R K
Sbjct: 117 QAMHREKYPNYKYRPRRKAK 136
>ZFIN|ZDB-GENE-991213-1 [details] [associations]
symbol:sox17 "SRY-box containing gene 17"
species:7955 "Danio rerio" [GO:0070121 "Kupffer's vesicle
development" evidence=IMP] [GO:0061371 "determination of heart
left/right asymmetry" evidence=IMP] [GO:0035469 "determination of
pancreatic left/right asymmetry" evidence=IMP] InterPro:IPR009071
Pfam:PF00505 ZFIN:ZDB-GENE-991213-1 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0070121 GO:GO:0061371
HSSP:P48432 HOVERGEN:HBG000517 GO:GO:0035469 EMBL:AF168614
IPI:IPI00490847 UniGene:Dr.81308 ProteinModelPortal:Q9PTN0
SMR:Q9PTN0 STRING:Q9PTN0 InParanoid:Q9PTN0 ArrayExpress:Q9PTN0
Uniprot:Q9PTN0
Length = 413
Score = 116 (45.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF V+ ++ R++ + +P + A + K G+ WK++ DK P+V +AE+ +V+
Sbjct: 64 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALPMVDKRPFVEEAERLRVK 122
Query: 99 YEKDMKNYNRR 109
+ +D NY R
Sbjct: 123 HMQDHPNYKYR 133
>MGI|MGI:98363 [details] [associations]
symbol:Sox15 "SRY-box containing gene 15" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0030154
"cell differentiation" evidence=IGI] [GO:0043403 "skeletal muscle
tissue regeneration" evidence=IMP] [GO:0045843 "negative regulation
of striated muscle tissue development" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IGI;IDA] [GO:0048627 "myoblast development"
evidence=IMP] InterPro:IPR009071 MGI:MGI:98363 Pfam:PF00505
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003682 GO:GO:0045843 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0014718
GO:GO:0070318 GO:GO:0043403 GO:GO:2000288 GO:GO:0048627 CTD:6665
eggNOG:NOG311451 HOVERGEN:HBG055512 KO:K09271 OMA:PQSDPRL
OrthoDB:EOG40K80Q EMBL:AB014474 EMBL:AF182945 EMBL:AB039214
EMBL:AB039215 EMBL:AB039216 EMBL:AB039217 EMBL:AB039218
EMBL:AB039219 EMBL:AB039220 EMBL:AB039221 EMBL:AB039222 EMBL:U70443
EMBL:X70909 EMBL:X98369 IPI:IPI00118219 PIR:S33715
RefSeq:NP_033261.1 UniGene:Mm.347499 ProteinModelPortal:P43267
SMR:P43267 MINT:MINT-4788454 STRING:P43267 PhosphoSite:P43267
PRIDE:P43267 Ensembl:ENSMUST00000047373 GeneID:20670 KEGG:mmu:20670
InParanoid:P43267 NextBio:299147 Bgee:P43267 CleanEx:MM_SOX15
Genevestigator:P43267 GermOnline:ENSMUSG00000041287 Uniprot:P43267
Length = 231
Score = 111 (44.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KRP +AF V+ R Q + +PK + + + K G +WK + + +K P+V +A++ +
Sbjct: 46 KVKRPMNAFMVWSSVQRRQMAQQNPKMHN-SEISKRLGAQWKLLGDEEKRPFVEEAKRLR 104
Query: 97 VEYEKDMKNYNRRQAEGTK 115
+ +D +Y R +K
Sbjct: 105 ARHLRDYPDYKYRPRRKSK 123
>FB|FBgn0000411 [details] [associations]
symbol:D "Dichaete" species:7227 "Drosophila melanogaster"
[GO:0007350 "blastoderm segmentation" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008301 "DNA binding, bending"
evidence=NAS;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0035120 "post-embryonic appendage
morphogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0007442 "hindgut morphogenesis"
evidence=IMP] [GO:0007420 "brain development" evidence=IMP]
[GO:0003705 "RNA polymerase II distal enhancer sequence-specific
DNA binding transcription factor activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0009950 "dorsal/ventral axis
specification" evidence=IMP] [GO:0060810 "intracellular mRNA
localization involved in pattern specification process"
evidence=IMP] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 GO:GO:0007420 EMBL:AE014296 GO:GO:0043565
GO:GO:0045944 GO:GO:0003705 GO:GO:0000122 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0003730 GO:GO:0009950 GO:GO:0002168 GO:GO:0007350
GeneTree:ENSGT00690000101940 EMBL:U68056 EMBL:X96419 EMBL:AY118670
EMBL:BT030105 RefSeq:NP_524066.1 UniGene:Dm.1835
ProteinModelPortal:Q24533 SMR:Q24533 DIP:DIP-21577N
MINT:MINT-800284 STRING:Q24533 PRIDE:Q24533
EnsemblMetazoa:FBtr0075746 EnsemblMetazoa:FBtr0333034
EnsemblMetazoa:FBtr0333035 EnsemblMetazoa:FBtr0333036 GeneID:39570
KEGG:dme:Dmel_CG5893 FlyBase:FBgn0000411 eggNOG:NOG319555
InParanoid:Q24533 OMA:QEGHIKR OrthoDB:EOG4HHMJQ PhylomeDB:Q24533
GenomeRNAi:39570 NextBio:814319 Bgee:Q24533 GermOnline:CG5893
GO:GO:0007442 GO:GO:0060810 GO:GO:0035120 Uniprot:Q24533
Length = 382
Score = 115 (45.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP +AF V+ R Q KD+PK + + + K G +WK ++E++K P++ +A++ +
Sbjct: 143 KRPMNAFMVWSRLQRRQIAKDNPKMHN-SEISKRLGAEWKLLAESEKRPFIDEAKRLRAL 201
Query: 99 YEKDMKNYNRR 109
+ K+ +Y R
Sbjct: 202 HMKEHPDYKYR 212
>ZFIN|ZDB-GENE-010111-1 [details] [associations]
symbol:sox19b "SRY-box containing gene 19b"
species:7955 "Danio rerio" [GO:0005667 "transcription factor
complex" evidence=IC] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-010111-1
GO:GO:0051091 GO:GO:0005667 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101940
InterPro:IPR022097 Pfam:PF12336 EMBL:CR848737 IPI:IPI00495401
Ensembl:ENSDART00000058910 ArrayExpress:F1R211 Bgee:F1R211
Uniprot:F1R211
Length = 293
Score = 113 (44.8 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 23/83 (27%), Positives = 48/83 (57%)
Query: 34 DP-NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP +K KRP +AF V+ R + +++PK + + + K G +WK +++ +K P++ +A
Sbjct: 48 DPMDKVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLTDVEKRPFIDEA 106
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
++ + + K+ +Y + TK
Sbjct: 107 KRLRAVHMKEYPDYKYKPRRKTK 129
>ZFIN|ZDB-GENE-040109-4 [details] [associations]
symbol:sox7 "SRY-box containing gene 7" species:7955
"Danio rerio" [GO:0001570 "vasculogenesis" evidence=IGI]
[GO:0048793 "pronephros development" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-040109-4
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0001570 GO:GO:0048793 eggNOG:NOG242943 InterPro:IPR021934
Pfam:PF12067 PROSITE:PS51516 GeneTree:ENSGT00670000097649 KO:K09270
HOGENOM:HOG000069999 HOVERGEN:HBG000517 CTD:83595 OrthoDB:EOG447FTC
OMA:SFECSAG EMBL:BX510941 EMBL:BC075872 EMBL:AY423014
IPI:IPI00504949 RefSeq:NP_001074219.1 UniGene:Dr.151971
UniGene:Dr.27174 SMR:Q6TEN5 STRING:Q6TEN5
Ensembl:ENSDART00000044224 Ensembl:ENSDART00000130271 GeneID:394203
KEGG:dre:394203 InParanoid:Q6TEN5 NextBio:20815136 Uniprot:Q6TEN5
Length = 390
Score = 115 (45.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
+RP +AF V+ ++ R++ +P + A + K G+ WK+++ K PYV +AE+ +V+
Sbjct: 44 RRPMNAFMVWAKDERKRLAVQNPDLHN-AELSKMLGKSWKALTPPQKRPYVEEAERLRVQ 102
Query: 99 YEKDMKNYNRR 109
+ +D NY R
Sbjct: 103 HMQDYPNYKYR 113
>UNIPROTKB|Q6VVD7 [details] [associations]
symbol:sox8 "Transcription factor Sox-8" species:8355
"Xenopus laevis" [GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0014029 KO:K09270
InterPro:IPR022151 Pfam:PF12444 HSSP:P48432 CTD:30812 EMBL:AY324658
EMBL:BC169521 EMBL:BC169525 RefSeq:NP_001083964.1 UniGene:Xl.29789
ProteinModelPortal:Q6VVD7 SMR:Q6VVD7 GeneID:399214 KEGG:xla:399214
Xenbase:XB-GENE-480869 Uniprot:Q6VVD7
Length = 459
Score = 116 (45.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 37 KP--KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
KP KRP +AF V+ + R + +P + A + K G+ W+ +SE +K P+V +AE+
Sbjct: 95 KPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSENEKRPFVEEAER 153
Query: 95 RKVEYEKDMKNY 106
+V+++KD +Y
Sbjct: 154 LRVQHKKDHPDY 165
>MGI|MGI:3588290 [details] [associations]
symbol:Ubtfl1 "upstream binding transcription factor, RNA
polymerase I-like 1" species:10090 "Mus musculus" [GO:0001832
"blastocyst growth" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007566 "embryo implantation" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] InterPro:IPR009071
MGI:MGI:3588290 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 EMBL:CH466522 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0010468 GO:GO:0007566
GO:GO:0001832 HOGENOM:HOG000232068 GeneTree:ENSGT00530000063934
CTD:642623 eggNOG:NOG260929 OrthoDB:EOG47H5Q8 EMBL:AK139937
EMBL:AK163257 EMBL:BC139141 EMBL:BC145822 IPI:IPI00606875
RefSeq:NP_001028965.1 UniGene:Mm.380138 ProteinModelPortal:Q3USZ2
SMR:Q3USZ2 STRING:Q3USZ2 PhosphoSite:Q3USZ2 PRIDE:Q3USZ2
Ensembl:ENSMUST00000098973 Ensembl:ENSMUST00000164441
Ensembl:ENSMUST00000169398 GeneID:546118 KEGG:mmu:546118
UCSC:uc009ogq.1 InParanoid:Q3TQX0 OMA:LTAYIRF NextBio:413355
Bgee:Q3USZ2 Uniprot:Q3USZ2
Length = 394
Score = 115 (45.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P++PKRP +A+ F +E R +Y + +PK + A + K EK++ + K Y+ +K
Sbjct: 98 PDRPKRPLTAYLRFYKEQRAKYCQMYPKYSN-AQLTKILAEKYRQLPAEIKQRYIMDFKK 156
Query: 95 RKVEYEKDMKNYNRRQAEGTKP 116
K +++K M+ + +R P
Sbjct: 157 EKEDFQKKMRQFKKRHPVSGHP 178
>DICTYBASE|DDB_G0282427 [details] [associations]
symbol:DDB_G0282427 "HMG1/2 (high mobility group)
box-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016
SMART:SM00184 SMART:SM00249 dictyBase:DDB_G0282427 Pfam:PF00505
EMBL:AAFI02000047 GO:GO:0046872 GO:GO:0008270 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 RefSeq:XP_640043.1 ProteinModelPortal:Q54SJ6
EnsemblProtists:DDB0220651 GeneID:8623570 KEGG:ddi:DDB_G0282427
InParanoid:Q54SJ6 OMA:YMNINRE Uniprot:Q54SJ6
Length = 795
Score = 119 (46.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
+P+ SA+F +M RE K+ +P + ++ + K G KWK ++ D+ Y KA + K
Sbjct: 326 RPRSNVSAYFHYMNINREDEKRMNP-DVPLSDISKILGAKWKQLTPDDQKEYYEKAREDK 384
Query: 97 VEYEKDMKNYNRRQAE 112
+ YE +M YN++ E
Sbjct: 385 IRYENEMVLYNQKCKE 400
WARNING: HSPs involving 136 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.306 0.123 0.346 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 146 103 0.00091 102 3 11 23 0.38 31
29 0.49 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 386
No. of states in DFA: 500 (53 KB)
Total size of DFA: 109 KB (2076 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.70u 0.22s 12.92t Elapsed: 00:00:00
Total cpu time: 12.73u 0.22s 12.95t Elapsed: 00:00:00
Start: Mon May 20 16:42:56 2013 End: Mon May 20 16:42:56 2013
WARNINGS ISSUED: 2