BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032166
(146 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297845042|ref|XP_002890402.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
gi|297336244|gb|EFH66661.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
Length = 141
Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 108/141 (76%), Positives = 127/141 (90%), Gaps = 5/141 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK++TRNAKLSV KKPAK G+ AAKDPNKPKRP+SAFFVFME+FRE YKK+H
Sbjct: 3 MKGGKSKTETRNAKLSVTKKPAKGGKG---AAKDPNKPKRPSSAFFVFMEDFRETYKKEH 59
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
PKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN++ EG P+E+E
Sbjct: 60 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG--PKEDE 117
Query: 121 ESEKSMSEVNDEDDDEEGSGE 141
ES+KS+SEVNDEDD E+GS E
Sbjct: 118 ESDKSVSEVNDEDDAEDGSEE 138
>gi|79318286|ref|NP_001031074.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|297845040|ref|XP_002890401.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|297336243|gb|EFH66660.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|332191886|gb|AEE30007.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 142
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/144 (70%), Positives = 126/144 (87%), Gaps = 2/144 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN++ EG P+E+E
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG--PKEDE 118
Query: 121 ESEKSMSEVNDEDDDEEGSGEEDD 144
ES+KS+SEVNDEDD E+GS E+DD
Sbjct: 119 ESDKSVSEVNDEDDAEDGSEEDDD 142
>gi|8886929|gb|AAF80615.1|AC069251_8 F2D10.18 [Arabidopsis thaliana]
Length = 662
Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 100/141 (70%), Positives = 123/141 (87%), Gaps = 2/141 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 378 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 437
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN++ EG P+E+E
Sbjct: 438 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG--PKEDE 495
Query: 121 ESEKSMSEVNDEDDDEEGSGE 141
ES+KS+SEVNDEDD E+GS E
Sbjct: 496 ESDKSVSEVNDEDDAEDGSEE 516
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/130 (72%), Positives = 114/130 (87%), Gaps = 5/130 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 522 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 578
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
PKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN++ EG P+E+E
Sbjct: 579 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG--PKEDE 636
Query: 121 ESEKSMSEVN 130
ES+KS+SEVN
Sbjct: 637 ESDKSVSEVN 646
>gi|145323962|ref|NP_001077570.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191890|gb|AEE30011.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 140
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/141 (72%), Positives = 123/141 (87%), Gaps = 5/141 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
PKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN++ EG P+E+E
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG--PKEDE 115
Query: 121 ESEKSMSEVNDEDDDEEGSGE 141
ES+KS+SEVNDEDD E+GS E
Sbjct: 116 ESDKSVSEVNDEDDAEDGSEE 136
>gi|308569654|gb|ADO34793.1| high mobility group box 2 protein [Gossypium hirsutum]
Length = 146
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/114 (85%), Positives = 107/114 (93%), Gaps = 1/114 (0%)
Query: 1 MKGGKSKSDTRNAKLSVNKK-PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGGKSKSD ++AKLSVNKK KAG+KSGKAAKDPNKPKRPASAFFVFMEEFREQYKK+
Sbjct: 1 MKGGKSKSDAKSAKLSVNKKSTTKAGKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKE 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
HPKNKSVAAVGKAGG+KWKS+SEA+K PYV KAEKRKVEYEK+MK YN+RQAEG
Sbjct: 61 HPKNKSVAAVGKAGGDKWKSLSEAEKRPYVDKAEKRKVEYEKNMKAYNKRQAEG 114
>gi|312281681|dbj|BAJ33706.1| unnamed protein product [Thellungiella halophila]
Length = 144
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/130 (74%), Positives = 117/130 (90%), Gaps = 2/130 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK++TR++KLSV KKPAK +S AAKDPNKPKRPASAFFVFME+FRE +KK+H
Sbjct: 1 MKGGKSKTETRSSKLSVTKKPAKGAGRSKAAAKDPNKPKRPASAFFVFMEDFRETFKKEH 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
PKNKSVAAVGKA G+KWKS+S+A+KAPYVAKAEKRKV+YEK+MK YN++ EG P+E+E
Sbjct: 61 PKNKSVAAVGKAAGDKWKSLSDAEKAPYVAKAEKRKVDYEKNMKAYNKKLEEG--PKEDE 118
Query: 121 ESEKSMSEVN 130
ES+KS+SEVN
Sbjct: 119 ESDKSVSEVN 128
>gi|312282031|dbj|BAJ33881.1| unnamed protein product [Thellungiella halophila]
Length = 141
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/130 (73%), Positives = 116/130 (89%), Gaps = 5/130 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK++TR++KLSVNKKP K G+ AAKDPNKPKRPASAFFVFMEEFRE YKK+H
Sbjct: 1 MKGGKSKTETRSSKLSVNKKPTKGGKG---AAKDPNKPKRPASAFFVFMEEFRETYKKEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
P NKSVAAVGKAGG+KWKS+S+++KAPY AKA+KRKVEYEK+M YN++Q EG P+E+E
Sbjct: 58 PNNKSVAAVGKAGGQKWKSLSDSEKAPYQAKADKRKVEYEKNMNAYNKKQEEG--PKEDE 115
Query: 121 ESEKSMSEVN 130
ES+KS+SEV+
Sbjct: 116 ESDKSVSEVH 125
>gi|308569660|gb|ADO34795.1| high mobility group box 1 protein [Gossypium hirsutum]
Length = 142
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 109/130 (83%), Positives = 122/130 (93%), Gaps = 4/130 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSKSDT++AKLSV +KAG+KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH
Sbjct: 1 MKGGKSKSDTKSAKLSVK---SKAGKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
PKNKSVAAVGKAGG+KWKS+SEA+KAPYVAKAEKRKVEYEK+MK YN+RQAEG K +E+
Sbjct: 58 PKNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYEKNMKAYNKRQAEGPK-DEDV 116
Query: 121 ESEKSMSEVN 130
ES+KS+SEVN
Sbjct: 117 ESDKSVSEVN 126
>gi|224083306|ref|XP_002306980.1| high mobility group family [Populus trichocarpa]
gi|222856429|gb|EEE93976.1| high mobility group family [Populus trichocarpa]
Length = 160
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 95/129 (73%), Positives = 110/129 (85%), Gaps = 6/129 (4%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAG------RKSGKAAKDPNKPKRPASAFFVFMEEFRE 54
MKGG+SKSDT++AKLSV KKP K G RKSGKAAKDPNKPKRPASAFFVFMEEFRE
Sbjct: 1 MKGGRSKSDTKSAKLSVTKKPTKGGGGGAAARKSGKAAKDPNKPKRPASAFFVFMEEFRE 60
Query: 55 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 114
QYK++HPKNKSVAAVGKAGG+KWKS+SEA+KAP+VAKA+KRKVEYEK MK YN+ Q +G
Sbjct: 61 QYKREHPKNKSVAAVGKAGGDKWKSLSEAEKAPFVAKADKRKVEYEKKMKAYNKEQLKGP 120
Query: 115 KPEEEEESE 123
+ + S+
Sbjct: 121 RKKRSLRSQ 129
>gi|18394900|ref|NP_564124.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|75220405|sp|P93047.1|HMGB3_ARATH RecName: Full=High mobility group B protein 3; AltName: Full=High
mobility group protein B 2; Short=AtHMGbeta2; Short=HMG
beta 2; AltName: Full=Nucleosome/chromatin assembly
factor group D 03; Short=Nucleosome/chromatin assembly
factor group D 3
gi|15724174|gb|AAL06479.1|AF411789_1 At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|1694976|emb|CAA70691.1| HMG1 [Arabidopsis thaliana]
gi|2832361|emb|CAA74402.1| HMG protein [Arabidopsis thaliana]
gi|20453325|gb|AAM19901.1| At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|21537072|gb|AAM61413.1| unknown [Arabidopsis thaliana]
gi|22530942|gb|AAM96975.1| expressed protein [Arabidopsis thaliana]
gi|23198424|gb|AAN15739.1| expressed protein [Arabidopsis thaliana]
gi|332191888|gb|AEE30009.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 141
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/130 (72%), Positives = 114/130 (87%), Gaps = 5/130 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
PKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN++ EG P+E+E
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG--PKEDE 115
Query: 121 ESEKSMSEVN 130
ES+KS+SEVN
Sbjct: 116 ESDKSVSEVN 125
>gi|18394898|ref|NP_564123.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|75219648|sp|O49596.1|HMGB2_ARATH RecName: Full=High mobility group B protein 2; AltName: Full=High
mobility group protein B 1; Short=AtHMGbeta1; Short=HMG
beta 1; AltName: Full=Nucleosome/chromatin assembly
factor group D 02; Short=Nucleosome/chromatin assembly
factor group D 2
gi|13877971|gb|AAK44063.1|AF370248_1 unknown protein [Arabidopsis thaliana]
gi|2832359|emb|CAA74401.1| HMG protein [Arabidopsis thaliana]
gi|17104699|gb|AAL34238.1| unknown protein [Arabidopsis thaliana]
gi|21536964|gb|AAM61305.1| unknown [Arabidopsis thaliana]
gi|26452113|dbj|BAC43146.1| unknown protein [Arabidopsis thaliana]
gi|225897948|dbj|BAH30306.1| hypothetical protein [Arabidopsis thaliana]
gi|332191885|gb|AEE30006.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 144
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/130 (70%), Positives = 114/130 (87%), Gaps = 2/130 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN++ EG P+E+E
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG--PKEDE 118
Query: 121 ESEKSMSEVN 130
ES+KS+SEVN
Sbjct: 119 ESDKSVSEVN 128
>gi|145323960|ref|NP_001077569.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|332191887|gb|AEE30008.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 143
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/130 (70%), Positives = 114/130 (87%), Gaps = 2/130 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN++ EG P+E+E
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG--PKEDE 118
Query: 121 ESEKSMSEVN 130
ES+KS+SEVN
Sbjct: 119 ESDKSVSEVN 128
>gi|304651500|gb|ADM47612.1| high mobility group protein [Hevea brasiliensis]
Length = 146
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/114 (86%), Positives = 108/114 (94%), Gaps = 1/114 (0%)
Query: 1 MKGGKSKSDTRNA-KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGGKSKSDT+ A +LSVNKKPAKA +KSGKAAKDPNKPKRPASAFFVFMEEFREQYKK+
Sbjct: 1 MKGGKSKSDTKAANRLSVNKKPAKASKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKE 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
HPKNKSVAAVGKAGG+KWKS+SEA+KAPYVAKAEKRKVEYEK +K YN+ QAEG
Sbjct: 61 HPKNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYEKKLKAYNKGQAEG 114
>gi|225457566|ref|XP_002272299.1| PREDICTED: high mobility group-like isoform 1 [Vitis vinifera]
gi|359491843|ref|XP_003634333.1| PREDICTED: high mobility group-like isoform 2 [Vitis vinifera]
gi|297745562|emb|CBI40727.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 98/137 (71%), Positives = 112/137 (81%), Gaps = 7/137 (5%)
Query: 1 MKGGKSKSDTR--NAKLSVNKKPAKAGRKSGKAAK----DPNKPKRPASAFFVFMEEFRE 54
MKGG+SKSDT+ +AKLSV K A + DPNKPKRPASAFFVFMEEFR+
Sbjct: 1 MKGGRSKSDTKKADAKLSVKKGAAATKAGKKTKKEKPVKDPNKPKRPASAFFVFMEEFRK 60
Query: 55 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 114
QYK+ HP NKSV+ VGKAGG+KWKSMSEA+KAPYVAKAEKRKVEYEK+MK YN++QAEGT
Sbjct: 61 QYKEKHPSNKSVSVVGKAGGDKWKSMSEAEKAPYVAKAEKRKVEYEKNMKAYNKKQAEGT 120
Query: 115 K-PEEEEESEKSMSEVN 130
K EEE+ESEKS+SEVN
Sbjct: 121 KVVEEEDESEKSLSEVN 137
>gi|255539248|ref|XP_002510689.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223551390|gb|EEF52876.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 145
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/113 (82%), Positives = 107/113 (94%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+D +N+KLSVNKKP KA +K+GKAAKDPNKPKRPASAFFVFMEEFREQYKK+H
Sbjct: 1 MKGGKSKADAKNSKLSVNKKPVKATKKAGKAAKDPNKPKRPASAFFVFMEEFREQYKKEH 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
PKNKSVAAVGKAGG++WKSMSE++KAP+VAKAEKRK+EYEK +K YN+ QAEG
Sbjct: 61 PKNKSVAAVGKAGGDRWKSMSESEKAPFVAKAEKRKIEYEKKLKAYNKGQAEG 113
>gi|359476973|ref|XP_002280084.2| PREDICTED: high mobility group B2 protein-like isoform 1 [Vitis
vinifera]
Length = 156
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 96/139 (69%), Positives = 109/139 (78%), Gaps = 9/139 (6%)
Query: 1 MKGGKSKSDT-----RNAKLSVNKKPAKA-GRKSGK---AAKDPNKPKRPASAFFVFMEE 51
MKGGKSK+ NA+LSV KK A A G+K+ K A KDPNKPKRPASAFFVFMEE
Sbjct: 1 MKGGKSKAAEVKRADSNARLSVKKKGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEE 60
Query: 52 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111
FR+QYK+ HP NKSV+ VGKAGG+KWKS+SEA+KAPYVAKAEKRK EY K M+ YN+R A
Sbjct: 61 FRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRMA 120
Query: 112 EGTKPEEEEESEKSMSEVN 130
EG EEEES+KS SEVN
Sbjct: 121 EGPTAAEEEESDKSRSEVN 139
>gi|118488125|gb|ABK95882.1| unknown [Populus trichocarpa]
Length = 151
Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/118 (76%), Positives = 100/118 (84%), Gaps = 5/118 (4%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-----DPNKPKRPASAFFVFMEEFREQ 55
MKGG+SKSDT++AKLSVNKKP K G + DPNKPKRPASAFFVFMEEFREQ
Sbjct: 1 MKGGRSKSDTKSAKLSVNKKPTKGGAAAAAKKSGKAAKDPNKPKRPASAFFVFMEEFREQ 60
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
YKK+HPKNKSVAAVGKAGG+KWKS+S A+KAPYVAKA+KRKVEYEK MK YN+ QAEG
Sbjct: 61 YKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNKEQAEG 118
>gi|296088654|emb|CBI37645.3| unnamed protein product [Vitis vinifera]
Length = 154
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/137 (69%), Positives = 109/137 (79%), Gaps = 7/137 (5%)
Query: 1 MKGGKSKS---DTRNAKLSVNKKPAKA-GRKSGK---AAKDPNKPKRPASAFFVFMEEFR 53
MKGGKSK+ ++KLSV KK A A G+K+ K A KDPNKPKRPASAFFVFMEEFR
Sbjct: 1 MKGGKSKAAEVKRADSKLSVKKKGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEEFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
+QYK+ HP NKSV+ VGKAGG+KWKS+SEA+KAPYVAKAEKRK EY K M+ YN+R AEG
Sbjct: 61 KQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRMAEG 120
Query: 114 TKPEEEEESEKSMSEVN 130
EEEES+KS SEVN
Sbjct: 121 PTAAEEEESDKSRSEVN 137
>gi|224081483|ref|XP_002306429.1| high mobility group family [Populus trichocarpa]
gi|222855878|gb|EEE93425.1| high mobility group family [Populus trichocarpa]
Length = 144
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/131 (70%), Positives = 106/131 (80%), Gaps = 5/131 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SKSD+RN + +K A AG K S KAAKDPNKPKRPASAFFVFME+FR+QYK+
Sbjct: 1 MKGGRSKSDSRNNDAKLKRKGAGAGTKASKKAAKDPNKPKRPASAFFVFMEDFRKQYKES 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
HP NKSVAAVGKAGG+KWKS+SEA+KAPY AKAEKRK EY KDM YN+R A G +
Sbjct: 61 HPNNKSVAAVGKAGGDKWKSLSEAEKAPYAAKAEKRKFEYNKDMAAYNKRLAGGN----D 116
Query: 120 EESEKSMSEVN 130
+ES+KS SEVN
Sbjct: 117 DESDKSKSEVN 127
>gi|118484838|gb|ABK94286.1| unknown [Populus trichocarpa]
Length = 144
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/131 (69%), Positives = 106/131 (80%), Gaps = 5/131 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SKSD+RN + +K A AG K S KAAKDPNKPKRPASAFFVFME+FR+QYK+
Sbjct: 1 MKGGRSKSDSRNNDAKLKRKGAGAGTKASKKAAKDPNKPKRPASAFFVFMEDFRKQYKES 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
HP NKSVAAVGKAGG+KWKS+SEA+KAP+ AKAEKRK EY KDM YN+R A G +
Sbjct: 61 HPNNKSVAAVGKAGGDKWKSLSEAEKAPFAAKAEKRKFEYNKDMAAYNKRLAGGN----D 116
Query: 120 EESEKSMSEVN 130
+ES+KS SEVN
Sbjct: 117 DESDKSKSEVN 127
>gi|357640485|gb|AET87126.1| high mobility group B2 protein [Brassica napus]
Length = 145
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/130 (76%), Positives = 116/130 (89%), Gaps = 1/130 (0%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK++TR++KLSV KKPAKA S AAKDPNKPKRPASAFFVFME+FR+ YKKDH
Sbjct: 1 MKGGKSKTETRSSKLSVAKKPAKAAGGSKAAAKDPNKPKRPASAFFVFMEDFRQTYKKDH 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
P NKSVAAVGKAGGEKWKS+S+++KAP+VAKA+KRKVEYEK MK YN++ EG K E+EE
Sbjct: 61 PNNKSVAAVGKAGGEKWKSLSDSEKAPFVAKADKRKVEYEKTMKAYNKKLEEGPK-EDEE 119
Query: 121 ESEKSMSEVN 130
ES+KS+SEVN
Sbjct: 120 ESDKSVSEVN 129
>gi|308569658|gb|ADO34794.1| high mobility group box 4 protein [Gossypium hirsutum]
Length = 148
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/114 (76%), Positives = 100/114 (87%), Gaps = 1/114 (0%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGGKSKSDT++++L+VNKK + K A DPNKPKRPASAFFVFMEEFREQYKK+
Sbjct: 1 MKGGKSKSDTKSSRLAVNKKSSAKAGKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKE 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
HPKNKSVAAVGKAGGEKWKS+S+A+KAPY+AKAEKRKVEYEK+MK Y +RQAE
Sbjct: 61 HPKNKSVAAVGKAGGEKWKSLSDAEKAPYIAKAEKRKVEYEKNMKAYTKRQAEA 114
>gi|224065681|ref|XP_002301918.1| high mobility group family [Populus trichocarpa]
gi|222843644|gb|EEE81191.1| high mobility group family [Populus trichocarpa]
Length = 152
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/118 (79%), Positives = 104/118 (88%), Gaps = 5/118 (4%)
Query: 1 MKGGKSKSDTRNAKLSVN-----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKGG+SKSDT++AKLSVN A A +KSGKAAKDPNKPKRPASAFFVFMEEFREQ
Sbjct: 1 MKGGRSKSDTKSAKLSVNKKPTKGAAAAAAKKSGKAAKDPNKPKRPASAFFVFMEEFREQ 60
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
YKK+HPKNKSVAAVGKAGG+KWKS+S A+KAPYVAKA+KRKVEYEK MK YN+ QAEG
Sbjct: 61 YKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNKEQAEG 118
>gi|79318295|ref|NP_001031075.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191889|gb|AEE30010.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 147
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/123 (66%), Positives = 100/123 (81%), Gaps = 3/123 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
PKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN++ +
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLVIALRKMRNL 117
Query: 121 ESE 123
S+
Sbjct: 118 TSQ 120
>gi|194466165|gb|ACF74313.1| high mobility group protein 2 [Arachis hypogaea]
Length = 153
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/137 (64%), Positives = 111/137 (81%), Gaps = 7/137 (5%)
Query: 1 MKGGKSKSDTR--NAKLSVNKK--PA---KAGRKSGKAAKDPNKPKRPASAFFVFMEEFR 53
MKG KSK++++ +AKL+VNKK PA GKAAKDPNK KRP SAFFVFMEEFR
Sbjct: 1 MKGAKSKAESKRGDAKLAVNKKGTPATKGGRKTGKGKAAKDPNKLKRPPSAFFVFMEEFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
+Q+ KDHP+NK+V+AVGKA G KWK MS+A+KAPYVAK+EKRK +YEK+M+ YN++QAEG
Sbjct: 61 KQFNKDHPENKAVSAVGKAAGAKWKQMSDAEKAPYVAKSEKRKQDYEKNMRAYNKKQAEG 120
Query: 114 TKPEEEEESEKSMSEVN 130
+EEES+KS+SEVN
Sbjct: 121 PTGGDEEESDKSISEVN 137
>gi|148250187|gb|ABQ53545.1| HMG1 protein [Arachis diogoi]
Length = 141
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/124 (66%), Positives = 101/124 (81%), Gaps = 5/124 (4%)
Query: 12 NAKLSVNKKPAKAGRKSGK-----AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV 66
+AKL+VNKK A + K AAKDPNKPKRP SAFFVFMEEFR+Q+ KDHP+NK+V
Sbjct: 2 DAKLAVNKKGTPAAKGGRKTGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKDHPENKAV 61
Query: 67 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSM 126
+AVGKA G KWK MS+A+KAPYVAK+EKRK +YEK+M+ YN++QAEG +EEES+KS+
Sbjct: 62 SAVGKAAGAKWKQMSDAEKAPYVAKSEKRKQDYEKNMRAYNKKQAEGPTGGDEEESDKSI 121
Query: 127 SEVN 130
SEVN
Sbjct: 122 SEVN 125
>gi|1813329|dbj|BAA19156.1| HMG-1 [Canavalia gladiata]
Length = 141
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 102/127 (80%), Gaps = 2/127 (1%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K K+D + A + +K A AGRK S KAAKDPNKPKRP SAFFVFM EFREQYKK+HP N
Sbjct: 3 KVKADAKAADNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPTN 62
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
KSVA VGKAGG+KWKS+S+A+KAP+VA+AEK+K EY+K + YNR+ EG P EEE+S+
Sbjct: 63 KSVAVVGKAGGDKWKSLSDAEKAPFVARAEKKKEEYDKSILAYNRK-LEGKNPSEEEKSD 121
Query: 124 KSMSEVN 130
KS SEVN
Sbjct: 122 KSKSEVN 128
>gi|1052956|gb|AAC50019.1| high mobility group protein 2 HMG2 [Ipomoea nil]
Length = 146
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 106/130 (81%), Gaps = 4/130 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+ + N KL+V K+ + +KS K+ KDPNKPKRP SAFFVFME+FR+ YK+ H
Sbjct: 1 MKGGKSKAKSDN-KLAVKKRGCET-KKSKKSVKDPNKPKRPPSAFFVFMEDFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
P NKSVAAVGKAGG+KWK +++A+KAP++AKAEKRK EYEK M+ YNR+QA + +EE
Sbjct: 59 PNNKSVAAVGKAGGDKWKQLTDAEKAPFIAKAEKRKQEYEKSMQAYNRKQA--GEAADEE 116
Query: 121 ESEKSMSEVN 130
ES+KS SEVN
Sbjct: 117 ESDKSRSEVN 126
>gi|449455609|ref|XP_004145545.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449511984|ref|XP_004164108.1| PREDICTED: HMG1/2-like protein-like isoform 1 [Cucumis sativus]
gi|449511988|ref|XP_004164109.1| PREDICTED: HMG1/2-like protein-like isoform 2 [Cucumis sativus]
Length = 146
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/131 (66%), Positives = 109/131 (83%), Gaps = 1/131 (0%)
Query: 1 MKGGKSKSDTRNA-KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGGKS+S+++ A KK A A + S KA KDPNKPKRPASAFFVFMEEFR+++ ++
Sbjct: 1 MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
+P NK+V+AVGKA G+KWKSMS+A+KAPY+AKA+KRKVEYEK+MK YN++QA G EE
Sbjct: 61 NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
Query: 120 EESEKSMSEVN 130
+ESEKSMSEVN
Sbjct: 121 DESEKSMSEVN 131
>gi|351725567|ref|NP_001236841.1| HMG1/2-like protein [Glycine max]
gi|123379|sp|P26585.1|HMGL_SOYBN RecName: Full=HMG1/2-like protein; AltName: Full=Protein SB11
gi|18645|emb|CAA41200.1| HMG-1 like protein gene [Glycine max]
Length = 152
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/119 (68%), Positives = 101/119 (84%), Gaps = 6/119 (5%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKA-GRKS---GKAAKDPNKPKRPASAFFVFMEEFRE 54
MKGGKSK++++ A KL+VNKK A RK GKAAKDPNKPKRP SAFFVFMEEFR+
Sbjct: 1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60
Query: 55 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
+ K+HP+NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++QAEG
Sbjct: 61 VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119
>gi|356508616|ref|XP_003523051.1| PREDICTED: HMG1/2-like protein-like [Glycine max]
Length = 152
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 102/121 (84%), Gaps = 10/121 (8%)
Query: 1 MKGGKSKSDTR--NAKLSVNKKPAK------AGRKSGKAAKDPNKPKRPASAFFVFMEEF 52
MKGGKSK++++ +AKL+VNKK A AG+ GKAAKDPNKPKRP SAFFVFMEEF
Sbjct: 1 MKGGKSKTESKRADAKLAVNKKGAATKTRKPAGK--GKAAKDPNKPKRPPSAFFVFMEEF 58
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
R+ + K+HP NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++QAE
Sbjct: 59 RKVFNKEHPDNKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAE 118
Query: 113 G 113
G
Sbjct: 119 G 119
>gi|351725757|ref|NP_001235312.1| uncharacterized protein LOC100499992 [Glycine max]
gi|255628371|gb|ACU14530.1| unknown [Glycine max]
Length = 139
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 102/127 (80%), Gaps = 3/127 (2%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K+KSD + A + +K A AGRK S KAAKDPNKPKRP SAFFVFM EFREQ+KK+HP N
Sbjct: 3 KAKSDAKAADSRLKRKGAGAGRKQSRKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNN 62
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
KSVA VGKAGGEKWKS+S+A+KAP+VA AEK+K EYEK + YN +Q EG K EE+ES+
Sbjct: 63 KSVAVVGKAGGEKWKSLSDAEKAPFVATAEKKKQEYEKTISAYN-KQLEG-KNSEEDESD 120
Query: 124 KSMSEVN 130
KS SEVN
Sbjct: 121 KSKSEVN 127
>gi|729736|sp|P40619.1|HMGL_IPONI RecName: Full=HMG1/2-like protein
Length = 144
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/136 (63%), Positives = 111/136 (81%), Gaps = 4/136 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+ + N KL+V KK A +K+ KA KDPNKPKRP SAFFVFME+FR+ YK+ H
Sbjct: 1 MKGGKSKAKSDN-KLAV-KKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
P NKSVA VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN++QA G EEE
Sbjct: 59 PNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGA--AEEE 116
Query: 121 ESEKSMSEVNDEDDDE 136
ES+KS SEVND+D+D+
Sbjct: 117 ESDKSRSEVNDDDEDQ 132
>gi|359476975|ref|XP_003631923.1| PREDICTED: high mobility group B2 protein-like isoform 2 [Vitis
vinifera]
Length = 125
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 95/121 (78%), Gaps = 9/121 (7%)
Query: 1 MKGGKSKSDT-----RNAKLSVNKKPAKA-GRKSGK---AAKDPNKPKRPASAFFVFMEE 51
MKGGKSK+ NA+LSV KK A A G+K+ K A KDPNKPKRPASAFFVFMEE
Sbjct: 1 MKGGKSKAAEVKRADSNARLSVKKKGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEE 60
Query: 52 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111
FR+QYK+ HP NKSV+ VGKAGG+KWKS+SEA+KAPYVAKAEKRK EY K M+ YN+R
Sbjct: 61 FRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRME 120
Query: 112 E 112
E
Sbjct: 121 E 121
>gi|388497528|gb|AFK36830.1| unknown [Medicago truncatula]
Length = 155
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/120 (69%), Positives = 98/120 (81%), Gaps = 7/120 (5%)
Query: 1 MKGGKSKSDTR--NAKLSVNKKPA---KAGRKS--GKAAKDPNKPKRPASAFFVFMEEFR 53
MKG KSK +++ +AKL+VNKK A K GRK GK KDPNKPKRP SAFFVFME+FR
Sbjct: 1 MKGAKSKGESKKADAKLAVNKKGAAATKGGRKPAKGKEPKDPNKPKRPPSAFFVFMEDFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
+Q+KKD+P NK+V+AVGKA G KWKS+SEA+KAPY AKAEKRK EYEK MK YN++QAEG
Sbjct: 61 KQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKTMKAYNKKQAEG 120
>gi|388497036|gb|AFK36584.1| unknown [Medicago truncatula]
Length = 155
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/120 (69%), Positives = 98/120 (81%), Gaps = 7/120 (5%)
Query: 1 MKGGKSKSDTR--NAKLSVNKKPA---KAGRKS--GKAAKDPNKPKRPASAFFVFMEEFR 53
MKG KSK +++ +AKL+VNKK A K GRK GK KDPNKPKRP SAFFVFME+FR
Sbjct: 1 MKGAKSKGESKKADAKLAVNKKGAVATKGGRKPAKGKEPKDPNKPKRPPSAFFVFMEDFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
+Q+KKD+P NK+V+AVGKA G KWKS+SEA+KAPY AKAEKRK EYEK MK YN++QAEG
Sbjct: 61 KQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKTMKAYNKKQAEG 120
>gi|388504718|gb|AFK40425.1| unknown [Lotus japonicus]
Length = 152
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/121 (66%), Positives = 100/121 (82%), Gaps = 10/121 (8%)
Query: 1 MKGGKSKSDTRNA--KLSVNKK------PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEF 52
MKGGKS+++++ A KL+VNKK PA+ + GKAAKDPNKPKRP SAFFVFME+F
Sbjct: 1 MKGGKSRTESKRAEPKLAVNKKAGGATKPARGAK--GKAAKDPNKPKRPPSAFFVFMEDF 58
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
R+ + K++P+NK+V+AVGKA G KWKSMSEA+KAPYVAKAEKRK +YEK MK YN++QAE
Sbjct: 59 RKIFNKENPENKAVSAVGKAAGAKWKSMSEAEKAPYVAKAEKRKADYEKTMKAYNKKQAE 118
Query: 113 G 113
G
Sbjct: 119 G 119
>gi|351723773|ref|NP_001235499.1| uncharacterized protein LOC100305957 [Glycine max]
gi|255627099|gb|ACU13894.1| unknown [Glycine max]
Length = 142
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 101/127 (79%), Gaps = 3/127 (2%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K+KSD + A + +K A AGRK S KAAKDPNKPK P SAFFVFM EFREQ+KK+HP N
Sbjct: 3 KAKSDAKAADSRLKRKGAGAGRKQSKKAAKDPNKPKGPPSAFFVFMSEFREQFKKEHPNN 62
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
KSVA VGKAGG+KWKS+S+A+KAP+VA AEK+K EYEK + YN++ EG K EE+ES+
Sbjct: 63 KSVAVVGKAGGDKWKSLSDAEKAPFVATAEKKKQEYEKTILAYNKK-LEG-KNSEEDESD 120
Query: 124 KSMSEVN 130
KS SEVN
Sbjct: 121 KSKSEVN 127
>gi|449456873|ref|XP_004146173.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449495123|ref|XP_004159740.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|63020536|gb|AAY26151.1| high mobility group protein [Cucumis sativus]
Length = 146
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/130 (70%), Positives = 104/130 (80%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK + + K A A +KS KAAKDPNKPKRPASAFFVFMEEFR+QYKK+H
Sbjct: 1 MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
P NKSVAAVGKAGG+KWKSMS+A+KAPY+ KAEKRK EY K M+ YN+R AEG EEE
Sbjct: 61 PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
Query: 121 ESEKSMSEVN 130
ES+KS SEVN
Sbjct: 121 ESDKSKSEVN 130
>gi|116778852|gb|ABK21026.1| unknown [Picea sitchensis]
gi|116782574|gb|ABK22556.1| unknown [Picea sitchensis]
gi|116782678|gb|ABK22606.1| unknown [Picea sitchensis]
gi|116782786|gb|ABK22657.1| unknown [Picea sitchensis]
gi|116782898|gb|ABK22712.1| unknown [Picea sitchensis]
gi|116791878|gb|ABK26144.1| unknown [Picea sitchensis]
gi|148907501|gb|ABR16881.1| unknown [Picea sitchensis]
gi|224284566|gb|ACN40016.1| unknown [Picea sitchensis]
gi|224285212|gb|ACN40332.1| unknown [Picea sitchensis]
gi|224286734|gb|ACN41070.1| unknown [Picea sitchensis]
Length = 157
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/144 (57%), Positives = 101/144 (70%), Gaps = 15/144 (10%)
Query: 1 MKGGKSKSDTRNAKLSVNKKP--------------AKAGRKSGKAAKDPNKPKRPASAFF 46
MKGGK+K++ + V +KP ++ +K KAAKDPNKPKRPASAFF
Sbjct: 1 MKGGKAKNEASSTLKKVEEKPIGKRKTAAKESKVSSRQEKKGRKAAKDPNKPKRPASAFF 60
Query: 47 VFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
VFME+FR+ YK+ +P KSV+ VGKAGG+KWKSMSEADKAPYVAKA KRK EYEK+M Y
Sbjct: 61 VFMEDFRKTYKEKNPNVKSVSVVGKAGGDKWKSMSEADKAPYVAKAGKRKTEYEKNMAAY 120
Query: 107 NRRQAEGTKPEEEEESEKSMSEVN 130
N +Q T + EES+KS SEVN
Sbjct: 121 NNKQT-STAGDSAEESDKSKSEVN 143
>gi|2894109|emb|CAA05365.1| high mobility group protein [Solanum tuberosum]
Length = 141
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/130 (62%), Positives = 99/130 (76%), Gaps = 4/130 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK+ + KL V KK A +K+ AAKDPNKPKRP SAFFVFMEEFR+ YK+ H
Sbjct: 1 MKGAKSKAKA-DTKLGVRKK-ATESKKAKNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
P NKSVA VGKAGG+KWK +S+ +KAPY AKAEKRK EY+K+M YN++ A G ++E
Sbjct: 59 PNNKSVAVVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKNMDAYNKKLAAGD--ADDE 116
Query: 121 ESEKSMSEVN 130
ES+KS SEV+
Sbjct: 117 ESDKSKSEVH 126
>gi|297836478|ref|XP_002886121.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
gi|297331961|gb|EFH62380.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/147 (53%), Positives = 104/147 (70%), Gaps = 5/147 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKPGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
+P NKSVA VGKA G +WKSM+E DKAPYVAKAE RK EY K M+ YN + A GT EE
Sbjct: 57 NPNNKSVATVGKAAGARWKSMTEEDKAPYVAKAESRKTEYLKTMQQYNMKLASGTNRGEE 116
Query: 120 EESEKSMSEVNDEDDDEEGSGEEDDDE 146
++S+KS SEV++ +E EE+DD+
Sbjct: 117 DDSDKSKSEVDEAGSEEVFMQEEEDDD 143
>gi|436424|emb|CAA54168.1| HMG 1 protein [Pisum sativum]
Length = 154
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/120 (65%), Positives = 95/120 (79%), Gaps = 7/120 (5%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFR 53
MKGGKSK +++ A KL+VNKK A A + K A KDPNKPKRP SAFFVFME+FR
Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAPATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMEDFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
+Q+KK + NK+V+AVGKA G KWKSM+EA+KAPY AKAEKRK EYEK MK+YN++QAEG
Sbjct: 61 KQFKKGNADNKAVSAVGKAAGAKWKSMTEAEKAPYAAKAEKRKAEYEKSMKSYNKKQAEG 120
>gi|115480551|ref|NP_001063869.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|50726318|dbj|BAD33893.1| putative HMGd1 [Oryza sativa Japonica Group]
gi|113632102|dbj|BAF25783.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|213959176|gb|ACJ54922.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215694881|dbj|BAG90072.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 127
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/138 (56%), Positives = 97/138 (70%), Gaps = 14/138 (10%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+S+S +++LSV K KA KDPNKPKRP SAFFVFME+FR+ YK+ HP K
Sbjct: 4 RSRSSNGDSRLSVRKT---------KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
V+ +GKAGG+KWKSM++ADKAP+V KAEK K EY K + YN +QA G P +S+K
Sbjct: 55 QVSVIGKAGGDKWKSMTDADKAPFVTKAEKLKAEYTKKIDAYNNKQAGG--PATSGDSDK 112
Query: 125 SMSEVNDEDDDEEGSGEE 142
S SEVNDED EGSG+E
Sbjct: 113 SKSEVNDED---EGSGDE 127
>gi|309243128|gb|ADD74180.2| high mobility group box 3 protein [Gossypium hirsutum]
Length = 139
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 104/130 (80%), Gaps = 3/130 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGG++KSD+ A + K A AG+++ KAAKDPNKPKRPASAFFVFMEEFR+QYK+ +
Sbjct: 1 MKGGQTKSDSMQAGNKLKGKGAGAGKRAKKAAKDPNKPKRPASAFFVFMEEFRKQYKEAN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
P N+SV+AVGKAGGEKWKSM++A+KAPYV KAEKRK EY K M+ YN + A G ++
Sbjct: 61 PDNRSVSAVGKAGGEKWKSMTDAEKAPYVQKAEKRKSEYNKKMQAYNLKLAGGG---NDD 117
Query: 121 ESEKSMSEVN 130
ES+KS SEVN
Sbjct: 118 ESDKSKSEVN 127
>gi|217075707|gb|ACJ86213.1| unknown [Medicago truncatula]
gi|388513073|gb|AFK44598.1| unknown [Medicago truncatula]
Length = 142
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 97/127 (76%), Gaps = 4/127 (3%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K K+D++ A + +K A AGRK + KAAKDPNKPKRP SAFFVFM +FREQYKKDHP N
Sbjct: 3 KVKADSKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNN 62
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
KSVAAVGKA GE WKSMSE DKAPY A+A K+K EYE + YN++ EG +EE+ S+
Sbjct: 63 KSVAAVGKACGEAWKSMSEEDKAPYAARALKKKEEYEVATQAYNKK-LEGK--DEEDGSD 119
Query: 124 KSMSEVN 130
KS SEVN
Sbjct: 120 KSKSEVN 126
>gi|729737|sp|P40620.1|HMGL_VICFA RecName: Full=HMG1/2-like protein
Length = 149
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 103/137 (75%), Gaps = 10/137 (7%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFR 53
MKGGKSK +++ A KL+VNKK A A + K A KDPNKPKRP SAFFVFM +FR
Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
EQYKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE ++ YN++ EG
Sbjct: 61 EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK-LEG 119
Query: 114 TKPEEEEESEKSMSEVN 130
++EE S+KS SEVN
Sbjct: 120 K--DDEEGSDKSKSEVN 134
>gi|2196548|gb|AAB61215.1| DNA-binding protein [Nicotiana tabacum]
Length = 142
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 86/130 (66%), Positives = 103/130 (79%), Gaps = 5/130 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+ ++KL V +K A +K+ KAAKDPNKPKRP SAFFVFMEEFR+ YK+ H
Sbjct: 1 MKGGKSKAGA-DSKLGV-RKKATETKKAKKAAKDPNKPKRPPSAFFVFMEEFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
P NKSVAAVGKAGG+ WK +SEA+KAPY AKAEKRK EY+K+M YNR+QA EE+
Sbjct: 59 PNNKSVAAVGKAGGDAWKKLSEAEKAPYQAKAEKRKAEYQKNMDAYNRKQAGDA---EED 115
Query: 121 ESEKSMSEVN 130
ES+KS SEV+
Sbjct: 116 ESDKSKSEVH 125
>gi|21592453|gb|AAM64404.1| putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 105/146 (71%), Gaps = 9/146 (6%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSG-KAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+G K KDPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGNKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
+P NKSVA VGKA G +WKSM++ DKAPYVAKAE RK EY K+++ YN + A GT EE
Sbjct: 57 NPNNKSVATVGKAAGARWKSMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN-REE 115
Query: 120 EESEKSMSEVNDEDDDEEGSGEEDDD 145
++S+KS SEV++ +EE EDDD
Sbjct: 116 DDSDKSKSEVDEAVSEEEA---EDDD 138
>gi|2832355|emb|CAA74403.1| HMG protein [Arabidopsis thaliana]
Length = 138
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 104/146 (71%), Gaps = 9/146 (6%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK+ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKA----GATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
+P NKSVA VGKA G +WKSM++ DKAPYVAKAE RK EY K+++ YN + A GT EE
Sbjct: 57 NPNNKSVATVGKAAGARWKSMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN-REE 115
Query: 120 EESEKSMSEVNDEDDDEEGSGEEDDD 145
++S+KS SEV++ +EE EDDD
Sbjct: 116 DDSDKSKSEVDEAVSEEEA---EDDD 138
>gi|15227862|ref|NP_179347.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|145323080|ref|NP_001031364.2| high mobility group B4 protein [Arabidopsis thaliana]
gi|310947092|sp|Q42344.1|HMGB4_ARATH RecName: Full=High mobility group B protein 4; AltName: Full=High
mobility group protein G; Short=AtHMGgamma; Short=HMG
gamma; AltName: Full=Nucleosome/chromatin assembly
factor group D 04; Short=Nucleosome/chromatin assembly
factor group D 4
gi|13926177|gb|AAK49570.1|AF370562_1 putative HMG protein [Arabidopsis thaliana]
gi|4914377|gb|AAD32913.1| putative HMG protein [Arabidopsis thaliana]
gi|23297615|gb|AAN12992.1| putative HMG protein [Arabidopsis thaliana]
gi|330251557|gb|AEC06651.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|330251558|gb|AEC06652.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 138
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 105/146 (71%), Gaps = 9/146 (6%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
+P NKSVA VGKA G +WK+M++ DKAPYVAKAE RK EY K+++ YN + A GT EE
Sbjct: 57 NPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN-REE 115
Query: 120 EESEKSMSEVNDEDDDEEGSGEEDDD 145
++S+KS SEV++ +EE EDDD
Sbjct: 116 DDSDKSKSEVDEAVSEEEA---EDDD 138
>gi|194466163|gb|ACF74312.1| high mobility group protein 1 [Arachis hypogaea]
Length = 139
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/126 (65%), Positives = 98/126 (77%), Gaps = 1/126 (0%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K K+D + A + +K A GRK K AKDPNKPKRP SAFFVFM EFREQYKK+HP NK
Sbjct: 3 KVKADAKAADNRLKRKGAGTGRKQAKKAKDPNKPKRPPSAFFVFMSEFREQYKKEHPNNK 62
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
SVA VGKAGG++WKSMS+ADKAPY AKAEK+K EYE+ M+ YN++Q E EE+ES+K
Sbjct: 63 SVAVVGKAGGDRWKSMSDADKAPYQAKAEKKKEEYERTMQAYNKKQ-ESKGASEEDESDK 121
Query: 125 SMSEVN 130
S SEVN
Sbjct: 122 SKSEVN 127
>gi|357484151|ref|XP_003612362.1| HMG1/2-like protein [Medicago truncatula]
gi|355513697|gb|AES95320.1| HMG1/2-like protein [Medicago truncatula]
Length = 140
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 93/126 (73%), Gaps = 1/126 (0%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K+ SD + A + +K A G K K AKDPNKPKRP SAFFVFM EFRE++KK++P NK
Sbjct: 3 KAVSDAKPADNRLKRKGAGTGTKQSKKAKDPNKPKRPPSAFFVFMSEFRERFKKENPSNK 62
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
SVA VGKAGG++WK++S+ADKAP++AKA+K K EYEK M+ YN E EEE SEK
Sbjct: 63 SVAVVGKAGGKEWKALSDADKAPFIAKADKLKEEYEKTMRAYNMGITEKNA-SEEEGSEK 121
Query: 125 SMSEVN 130
S SEVN
Sbjct: 122 SKSEVN 127
>gi|145328748|ref|NP_001077909.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|222423535|dbj|BAH19737.1| AT2G17560 [Arabidopsis thaliana]
gi|330251559|gb|AEC06653.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 134
Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/139 (53%), Positives = 102/139 (73%), Gaps = 9/139 (6%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
+P NKSVA VGKA G +WK+M++ DKAPYVAKAE RK EY K+++ YN + A GT EE
Sbjct: 57 NPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN-REE 115
Query: 120 EESEKSMSEVND---EDDD 135
++S+KS SEV++ EDDD
Sbjct: 116 DDSDKSKSEVDEAEAEDDD 134
>gi|449461783|ref|XP_004148621.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 169
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/124 (58%), Positives = 94/124 (75%), Gaps = 2/124 (1%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A + +K + +K KA KDPNKPKRP SAFFVF+EEFR++YK+++P K+V+AVG
Sbjct: 28 RKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVKAVSAVG 87
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
KAGGEKWKS+S A+KAPY AKA KRK EYEK M+ Y+ ++ ++EESE+S SEVN
Sbjct: 88 KAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAYDSKKVASA--ADDEESERSKSEVN 145
Query: 131 DEDD 134
DED+
Sbjct: 146 DEDE 149
>gi|13877775|gb|AAK43965.1|AF370150_1 putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 104/146 (71%), Gaps = 9/146 (6%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
+P NKSVA VGKA G +WK+M++ DKAPYVAKAE K EY K+++ YN + A GT EE
Sbjct: 57 NPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESIKTEYIKNVQQYNLKLASGTN-REE 115
Query: 120 EESEKSMSEVNDEDDDEEGSGEEDDD 145
++S+KS SEV++ +EE EDDD
Sbjct: 116 DDSDKSKSEVDEAVSEEEA---EDDD 138
>gi|225448398|ref|XP_002269398.1| PREDICTED: high mobility group B protein 1 isoform 1 [Vitis
vinifera]
gi|147854340|emb|CAN83423.1| hypothetical protein VITISV_023376 [Vitis vinifera]
Length = 166
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 91/120 (75%), Gaps = 1/120 (0%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L +K K +K A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
KAGGEKWKS+SEADKAPY AKA KRK +YEK M YN++Q E ++EEES++S SEVN
Sbjct: 89 KAGGEKWKSLSEADKAPYEAKAAKRKSDYEKLMAAYNKKQ-ESMADDDEEESDRSKSEVN 147
>gi|297819892|ref|XP_002877829.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
gi|297323667|gb|EFH54088.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
Length = 185
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/116 (63%), Positives = 87/116 (75%), Gaps = 8/116 (6%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+K
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGE 141
APY KA KRK EYEK M YN+ EG+ +ESEKS SEVNDED E SGE
Sbjct: 101 APYEEKAAKRKAEYEKQMDAYNKNMEEGS-----DESEKSRSEVNDED---EASGE 148
>gi|42572635|ref|NP_974413.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|222423104|dbj|BAH19531.1| AT3G51880 [Arabidopsis thaliana]
gi|332645335|gb|AEE78856.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 185
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 87/116 (75%), Gaps = 8/116 (6%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+K
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGE 141
APY KA KRK EYEK M YN+ EG+ +ESEKS SE+NDED E SGE
Sbjct: 101 APYEEKAAKRKAEYEKQMDAYNKNLEEGS-----DESEKSRSEINDED---EASGE 148
>gi|255574381|ref|XP_002528104.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223532493|gb|EEF34283.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 171
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A +V++ ++ KA KDPNKPKRP SAFFVF+EEFR+ +KK++P SVAAVG
Sbjct: 28 RKAAAAVDRSSKLKAKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPSVTSVAAVG 87
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
KAGG KWKSMS A+KAPY AKA K+K EY K M YN++Q E T + EEES++S SEVN
Sbjct: 88 KAGGAKWKSMSSAEKAPYEAKAAKKKDEYGKLMNAYNKKQ-ESTADDGEEESDRSKSEVN 146
Query: 131 DEDDD 135
DEDD+
Sbjct: 147 DEDDE 151
>gi|125564627|gb|EAZ10007.1| hypothetical protein OsI_32309 [Oryza sativa Indica Group]
Length = 139
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 97/150 (64%), Gaps = 26/150 (17%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+S+S +++LSV K KA KDPNKPKRP SAFFVFME+FR+ YK+ HP K
Sbjct: 4 RSRSSNGDSRLSVRKT---------KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEA------------DKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
V+ +GKAGG+KWKSM++A DKAP+V KAEK K EY K + YN +QA
Sbjct: 55 QVSVIGKAGGDKWKSMTDAIGGYVVVAVPCKDKAPFVTKAEKLKAEYTKKIDAYNNKQAG 114
Query: 113 GTKPEEEEESEKSMSEVNDEDDDEEGSGEE 142
G P +S+KS SEVNDED EGSG+E
Sbjct: 115 G--PATSGDSDKSKSEVNDED---EGSGDE 139
>gi|222642048|gb|EEE70180.1| hypothetical protein OsJ_30257 [Oryza sativa Japonica Group]
Length = 139
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 97/150 (64%), Gaps = 26/150 (17%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+S+S +++LSV K KA KDPNKPKRP SAFFVFME+FR+ YK+ HP K
Sbjct: 4 RSRSSNGDSRLSVRKT---------KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEA------------DKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
V+ +GKAGG+KWKSM++A DKAP+V KAEK K EY K + YN +QA
Sbjct: 55 QVSVIGKAGGDKWKSMTDAIRGYVVVAVPCKDKAPFVTKAEKLKAEYTKKIDAYNNKQAG 114
Query: 113 GTKPEEEEESEKSMSEVNDEDDDEEGSGEE 142
G P +S+KS SEVNDED EGSG+E
Sbjct: 115 G--PATSGDSDKSKSEVNDED---EGSGDE 139
>gi|413935042|gb|AFW69593.1| high mobility group protein1 [Zea mays]
Length = 220
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 92/120 (76%), Gaps = 7/120 (5%)
Query: 1 MKGGKSKSDTR-NAKLSVNKK----PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V K PAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 58
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
+K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K + YN+ ++ K
Sbjct: 59 FKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAK 118
>gi|22135473|gb|AAM93217.1|AF527616_1 nucleasome/chromatin assembly factor D protein NFD101 [Zea mays]
gi|2196672|emb|CAA70045.1| HMGd1 [Zea mays]
gi|194698578|gb|ACF83373.1| unknown [Zea mays]
gi|414886616|tpg|DAA62630.1| TPA: HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/134 (55%), Positives = 94/134 (70%), Gaps = 13/134 (9%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSTAGDSRLSVRKT---------KAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN +Q+ P +S+K
Sbjct: 55 QVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNNKQS--GDPTASGDSDK 112
Query: 125 SMSEVNDEDDDEEG 138
S SEVNDE DEEG
Sbjct: 113 SKSEVNDE--DEEG 124
>gi|238013344|gb|ACR37707.1| unknown [Zea mays]
gi|414590135|tpg|DAA40706.1| TPA: HMG1/2-like protein [Zea mays]
Length = 127
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 93/134 (69%), Gaps = 12/134 (8%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K K KDPNKPKRP +AFFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSGGGDSRLSVRKT---------KVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
V+ +GKAGG+ WKS+S+A+KAPYV+KAEK KVEY K M YN +Q+ G P +S+K
Sbjct: 55 QVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQS-GGGPTLSGDSDK 113
Query: 125 SMSEVNDEDDDEEG 138
S SEVN D DEEG
Sbjct: 114 SKSEVN--DGDEEG 125
>gi|162459697|ref|NP_001105649.1| HMG-like nucleosome/chromatin assembly factor D [Zea mays]
gi|17017392|gb|AAL33650.1|AF440221_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/134 (55%), Positives = 94/134 (70%), Gaps = 13/134 (9%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSTAGDSRLSVRKT---------KAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN +Q+ P +S+K
Sbjct: 55 QVSLIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNNKQS--GDPTASGDSDK 112
Query: 125 SMSEVNDEDDDEEG 138
S SEVNDE DEEG
Sbjct: 113 SKSEVNDE--DEEG 124
>gi|397396|emb|CAA46876.1| DNA-binding protein [Zea mays]
Length = 168
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 92/120 (76%), Gaps = 7/120 (5%)
Query: 1 MKGGKSKSDTR-NAKLSVNKK----PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V K PAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 12 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 69
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
+K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K + YN+ ++ K
Sbjct: 70 FKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAK 129
>gi|115470082|ref|NP_001058640.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|3885888|gb|AAC78104.1| high mobility group protein [Oryza sativa Japonica Group]
gi|23345287|gb|AAN28722.1| HMG1 protein [Oryza sativa Indica Group]
gi|30267833|gb|AAP21609.1| HMGB1 [Oryza sativa Indica Group]
gi|54291150|dbj|BAD61823.1| HMGB1 [Oryza sativa Japonica Group]
gi|113596680|dbj|BAF20554.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|213959190|gb|ACJ54929.1| HMG protein [Oryza sativa Japonica Group]
gi|215692803|dbj|BAG88247.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222636260|gb|EEE66392.1| hypothetical protein OsJ_22728 [Oryza sativa Japonica Group]
Length = 157
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/113 (64%), Positives = 87/113 (76%), Gaps = 6/113 (5%)
Query: 1 MKGGKSKSDTR-NAKLSVNKK----PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V K PA GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 59
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+K+ +PKNKSVAAVGKA G++WKS++EADKAPYVAKA K K EY K + YN+
Sbjct: 60 FKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAAYNK 112
>gi|15231065|ref|NP_190756.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|145332807|ref|NP_001078269.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|75274976|sp|O49595.1|HMGB1_ARATH RecName: Full=High mobility group B protein 1; AltName: Full=High
mobility group protein A; Short=AtHMGalpha; Short=HMG
alpha; AltName: Full=Nucleosome/chromatin assembly
factor group D 01; Short=Nucleosome/chromatin assembly
factor group D 1
gi|2832357|emb|CAA74400.1| HMG protein [Arabidopsis thaliana]
gi|3068715|gb|AAC14415.1| unknown [Arabidopsis thaliana]
gi|15912191|gb|AAL08229.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|21360557|gb|AAM47475.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|332645334|gb|AEE78855.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645336|gb|AEE78857.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 178
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 86/115 (74%), Gaps = 8/115 (6%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+K
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSG 140
APY KA KRK EYEK M YN+ EG+ +ESEKS SE+NDED E SG
Sbjct: 101 APYEEKAAKRKAEYEKQMDAYNKNLEEGS-----DESEKSRSEINDED---EASG 147
>gi|293335943|ref|NP_001167650.1| high mobility group protein1 [Zea mays]
gi|123378|sp|P27347.1|MNB1B_MAIZE RecName: Full=DNA-binding protein MNB1B; AltName: Full=HMG1-like
protein
gi|22329|emb|CAA41220.1| high mobility group protein [Zea mays]
gi|5441502|emb|CAB46752.1| HMGa protein [Zea mays]
gi|22347617|gb|AAM95942.1| nucleosome/chromatin assembly factor group D protein [Zea mays]
gi|194701148|gb|ACF84658.1| unknown [Zea mays]
gi|194702316|gb|ACF85242.1| unknown [Zea mays]
gi|194703290|gb|ACF85729.1| unknown [Zea mays]
gi|195606194|gb|ACG24927.1| DNA-binding protein MNB1B [Zea mays]
gi|195612638|gb|ACG28149.1| DNA-binding protein MNB1B [Zea mays]
gi|195618138|gb|ACG30899.1| DNA-binding protein MNB1B [Zea mays]
gi|195618904|gb|ACG31282.1| DNA-binding protein MNB1B [Zea mays]
gi|195619012|gb|ACG31336.1| DNA-binding protein MNB1B [Zea mays]
gi|195619124|gb|ACG31392.1| DNA-binding protein MNB1B [Zea mays]
gi|195638824|gb|ACG38880.1| DNA-binding protein MNB1B [Zea mays]
gi|195642004|gb|ACG40470.1| DNA-binding protein MNB1B [Zea mays]
gi|223972731|gb|ACN30553.1| unknown [Zea mays]
gi|223972797|gb|ACN30586.1| unknown [Zea mays]
gi|223973279|gb|ACN30827.1| unknown [Zea mays]
gi|223974975|gb|ACN31675.1| unknown [Zea mays]
gi|413935043|gb|AFW69594.1| high mobility group protein1 [Zea mays]
Length = 157
Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 92/120 (76%), Gaps = 7/120 (5%)
Query: 1 MKGGKSKSDTR-NAKLSVNKK----PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V K PAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 58
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
+K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K + YN+ ++ K
Sbjct: 59 FKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAK 118
>gi|226505018|ref|NP_001151148.1| LOC100284781 [Zea mays]
gi|195644628|gb|ACG41782.1| HMG1/2-like protein [Zea mays]
Length = 127
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/134 (53%), Positives = 92/134 (68%), Gaps = 12/134 (8%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K K KDPNKPKRP + FFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSGGGDSRLSVRKT---------KVEKDPNKPKRPPTTFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
V+ +GKAGG+ WKS+S+A+KAPYV+KAEK KVEY K M YN +Q+ G P +S+K
Sbjct: 55 QVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQS-GGGPTLSGDSDK 113
Query: 125 SMSEVNDEDDDEEG 138
S SEVN D DEEG
Sbjct: 114 SKSEVN--DGDEEG 125
>gi|295913696|gb|ADG58089.1| transcription factor [Lycoris longituba]
Length = 183
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/121 (61%), Positives = 88/121 (72%), Gaps = 8/121 (6%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPA-----KAGRKSGKAAKDPNKPKRPASAFFVFMEEF 52
MKGGKSK DT +AKLSV +K A K K KA DPNKPKRP SAFFVFMEEF
Sbjct: 22 MKGGKSKPDTSKKADAKLSVKRKAAEKPAKKPAVKKAKAGTDPNKPKRPPSAFFVFMEEF 81
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
R+Q+K+ +P NK V+ VGKA G+KWKSMS A+KAPY AKA KRKV+Y K M YN++ A+
Sbjct: 82 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPYEAKAAKRKVDYNKTMVAYNKKLAD 141
Query: 113 G 113
G
Sbjct: 142 G 142
>gi|295913708|gb|ADG58095.1| transcription factor [Lycoris longituba]
Length = 190
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 86/121 (71%), Gaps = 8/121 (6%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 29 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 88
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
R+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN++ A+
Sbjct: 89 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKKLAD 148
Query: 113 G 113
G
Sbjct: 149 G 149
>gi|357123079|ref|XP_003563240.1| PREDICTED: DNA-binding protein MNB1B-like [Brachypodium distachyon]
Length = 160
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 86/113 (76%), Gaps = 6/113 (5%)
Query: 1 MKGGKSKSDTR-NAKLSVNKK----PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + + KL+V K PA GRK GKA KDPNKPKR SAFFVFM+EFR++
Sbjct: 1 MKGAKSKGAVKADTKLAVKSKGAEKPAAKGRK-GKAGKDPNKPKRAPSAFFVFMDEFRKE 59
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+K+ +PKNKSVAAVGKA GE+WK++SE+DKAPYVAKA K K EY K + YN+
Sbjct: 60 FKEKNPKNKSVAAVGKAAGERWKTLSESDKAPYVAKANKLKAEYNKAIAAYNK 112
>gi|295913458|gb|ADG57979.1| transcription factor [Lycoris longituba]
Length = 179
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 86/121 (71%), Gaps = 8/121 (6%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 19 MKGGKSKADTSKKADARLSVKRKAAEKPAKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 78
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
R+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN++ A+
Sbjct: 79 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKKLAD 138
Query: 113 G 113
G
Sbjct: 139 G 139
>gi|295913526|gb|ADG58011.1| transcription factor [Lycoris longituba]
Length = 171
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 86/121 (71%), Gaps = 8/121 (6%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 14 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 73
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
R+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN++ A+
Sbjct: 74 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKKLAD 133
Query: 113 G 113
G
Sbjct: 134 G 134
>gi|295913393|gb|ADG57949.1| transcription factor [Lycoris longituba]
Length = 162
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/121 (61%), Positives = 88/121 (72%), Gaps = 8/121 (6%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPA-----KAGRKSGKAAKDPNKPKRPASAFFVFMEEF 52
MKGGKSK DT +AKLSV +K A K K KA DPNKPKRP SAFFVFMEEF
Sbjct: 1 MKGGKSKPDTSKKADAKLSVKRKAAEKPAKKPAVKKAKAGTDPNKPKRPPSAFFVFMEEF 60
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
R+Q+K+ +P NK V+ VGKA G+KWKSMS A+KAPY AKA KRKV+Y K M YN++ A+
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPYEAKAAKRKVDYNKTMVAYNKKLAD 120
Query: 113 G 113
G
Sbjct: 121 G 121
>gi|295913700|gb|ADG58091.1| transcription factor [Lycoris longituba]
Length = 162
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 86/121 (71%), Gaps = 8/121 (6%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 1 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 60
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
R+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN++ A+
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKKLAD 120
Query: 113 G 113
G
Sbjct: 121 G 121
>gi|295913475|gb|ADG57987.1| transcription factor [Lycoris longituba]
Length = 162
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 86/121 (71%), Gaps = 8/121 (6%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 1 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPVVKKAKEGKDPNKPKRPPSAFFVFMEEF 60
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
R+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN++ A+
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKKLAD 120
Query: 113 G 113
G
Sbjct: 121 G 121
>gi|295913099|gb|ADG57812.1| transcription factor [Lycoris longituba]
Length = 120
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 83/104 (79%), Gaps = 2/104 (1%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
KA KDPNKPKR SAFFVFME+FR+++K+ +PKNKSVAAVGKAGGE+WKSMS+A+KAP+
Sbjct: 1 AKAGKDPNKPKRAPSAFFVFMEDFRKEFKEKNPKNKSVAAVGKAGGERWKSMSDAEKAPF 60
Query: 89 VAKAEKRKVEYEKDMKNYNR--RQAEGTKPEEEEESEKSMSEVN 130
V KAEK K EYEK M YN+ + + EEEES+KS SEVN
Sbjct: 61 VKKAEKLKAEYEKKMVAYNKGEKVKDDNADVEEEESDKSKSEVN 104
>gi|116790306|gb|ABK25570.1| unknown [Picea sitchensis]
gi|224286844|gb|ACN41125.1| unknown [Picea sitchensis]
gi|294461904|gb|ADE76508.1| unknown [Picea sitchensis]
Length = 151
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 81/97 (83%), Gaps = 1/97 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP SAFFVF++EFR++YK+ +P SV+AVGKAGGEKW+++S+A+KAPYVAKAE
Sbjct: 42 DPNKPKRPPSAFFVFLDEFRKEYKQANPNANSVSAVGKAGGEKWRALSDAEKAPYVAKAE 101
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
K+K EYEK M YN+++ T+ E EES+KS SEVN
Sbjct: 102 KKKAEYEKSMATYNKQKDSNTE-EVAEESDKSKSEVN 137
>gi|351725417|ref|NP_001235556.1| uncharacterized protein LOC100305961 [Glycine max]
gi|255627113|gb|ACU13901.1| unknown [Glycine max]
Length = 169
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/101 (63%), Positives = 80/101 (79%), Gaps = 3/101 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP SAF VF+EEFR+ +K ++P K+V+ VGKAGGEKWKS+S A+KAPY AKA
Sbjct: 49 DPNKPKRPPSAFLVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAA 108
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDD 134
KRK EYEK +K Y ++QA +++ES+KS SEVNDEDD
Sbjct: 109 KRKAEYEKLIKAYEKKQASSA---DDDESDKSKSEVNDEDD 146
>gi|224112525|ref|XP_002316220.1| high mobility group family [Populus trichocarpa]
gi|222865260|gb|EEF02391.1| high mobility group family [Populus trichocarpa]
Length = 176
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 89/129 (68%), Gaps = 6/129 (4%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L N+ K +K KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAALKANESSKKRVKKEKITKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEE------EESEK 124
KAGGEKWKS+S A+KAPY AKA KRK +YEK M YN++Q +++ E+S K
Sbjct: 89 KAGGEKWKSLSAAEKAPYEAKAAKRKSDYEKLMTAYNKKQDTDDGDDDDNDDDNIEQSHK 148
Query: 125 SMSEVNDED 133
S SEVN ++
Sbjct: 149 SKSEVNGQN 157
>gi|357159916|ref|XP_003578598.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 128
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 89/133 (66%), Gaps = 11/133 (8%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+ +S +++LSV K KA KDPN+PKRP SAFFVFME FR+ YK+ HP K
Sbjct: 4 RVRSSGGDSRLSVRKT---------KAEKDPNQPKRPPSAFFVFMEGFRKDYKEKHPDVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
V+ VGKAGG +WKS+S+A+KAP+VAKAEK K EY K M YN QA G E +S+K
Sbjct: 55 QVSVVGKAGGAEWKSLSDAEKAPFVAKAEKLKAEYNKKMVAYNNPQAGGQ--EASGDSDK 112
Query: 125 SMSEVNDEDDDEE 137
S SEVNDE D E
Sbjct: 113 SKSEVNDEADGSE 125
>gi|218198917|gb|EEC81344.1| hypothetical protein OsI_24530 [Oryza sativa Indica Group]
Length = 163
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 85/113 (75%), Gaps = 6/113 (5%)
Query: 1 MKGGKSKSDTR-NAKLSVNKK----PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V K PA GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 59
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+K+ +PKNKSVAAVGKA G++WKS++EADKAPYVAKA K K EY + + R
Sbjct: 60 FKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNRPLLPTTR 112
>gi|168032698|ref|XP_001768855.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168032700|ref|XP_001768856.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679967|gb|EDQ66408.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679968|gb|EDQ66409.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 110
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%), Gaps = 4/113 (3%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K GK KDPN PKRP +AFF+F+ EFRE +K+++P K V AVGKAGGEKWKSMSEA+K
Sbjct: 1 KGGKKLKDPNAPKRPPTAFFIFLNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEAEKQ 60
Query: 87 PYVAKAEKRKVEYEKDMKNYNRRQ-AEGTKPEEEEESEKSMSEVNDEDDDEEG 138
P++ KA ++K EY+K + YN++Q AE E EES+KS SE+ND++D+E G
Sbjct: 61 PFMTKAVQKKSEYDKTISAYNKKQDAEEV---EAEESDKSKSEINDDEDEEVG 110
>gi|295913113|gb|ADG57819.1| transcription factor [Lycoris longituba]
Length = 108
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/108 (65%), Positives = 82/108 (75%), Gaps = 2/108 (1%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKK 58
MKG K K+ + A KL+V K K K KA KDPNKPKR ASAFFVFME FR+++K+
Sbjct: 1 MKGRKPKASSTKATDKLAVKKGAPKKTEKKVKAGKDPNKPKRAASAFFVFMEGFRKEFKE 60
Query: 59 DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
+PKNKSVAAVGKAGGEKWKSMS+A+KAP+V KAEK K EYEK M Y
Sbjct: 61 KNPKNKSVAAVGKAGGEKWKSMSDAEKAPFVKKAEKLKAEYEKKMVAY 108
>gi|295913196|gb|ADG57857.1| transcription factor [Lycoris longituba]
Length = 143
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 82/103 (79%), Gaps = 2/103 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
KA KDPNKPKRP SAFFVFME FR+++K +PKNKS+AAVGKAGGE+WKSMS+++KAP+V
Sbjct: 25 KAGKDPNKPKRPPSAFFVFMEGFRKEFKDKNPKNKSIAAVGKAGGERWKSMSDSEKAPFV 84
Query: 90 AKAEKRKVEYEKDMKNYNR--RQAEGTKPEEEEESEKSMSEVN 130
+KAEK K EY K M +N+ + + EEEES+KS SEVN
Sbjct: 85 SKAEKLKAEYGKKMNAHNKGEKLRDDNAELEEEESDKSKSEVN 127
>gi|312281849|dbj|BAJ33790.1| unnamed protein product [Thellungiella halophila]
Length = 185
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 81/105 (77%), Gaps = 5/105 (4%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK +A KDPNKPKR SAFFVF+E+FR+ +KK++P K+V+AVGKAGG+KWKSMS+A+K
Sbjct: 41 RKEKRAKKDPNKPKRAPSAFFVFLEDFRQTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
APY KA KRK EYEK M YN+ EG+ +ESEKS SEVN
Sbjct: 101 APYEEKAAKRKAEYEKLMDAYNKNMEEGS-----DESEKSRSEVN 140
>gi|334185909|ref|NP_001190062.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645337|gb|AEE78858.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 161
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 80/105 (76%), Gaps = 5/105 (4%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+K
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
APY KA KRK EYEK M YN+ EG+ +ESEKS SE+N
Sbjct: 101 APYEEKAAKRKAEYEKQMDAYNKNLEEGS-----DESEKSRSEIN 140
>gi|346467547|gb|AEO33618.1| hypothetical protein [Amblyomma maculatum]
Length = 146
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 86/105 (81%), Gaps = 6/105 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
KAAKDPNKPKR SAFFVF++EFR+++K+ +P+NKSVAAV KAGG +WKSMS+ADK PYV
Sbjct: 34 KAAKDPNKPKRAPSAFFVFLDEFRKEFKEKNPENKSVAAVTKAGGARWKSMSDADKEPYV 93
Query: 90 AKAEKRKVEYEKDMKNYNRRQAEGTKPEE----EEESEKSMSEVN 130
+KA+K KVEY+K +K Y + QA +PE+ +EES+KS SEVN
Sbjct: 94 SKADKLKVEYQKKVKAYEKGQAH--EPEDNAEMDEESDKSKSEVN 136
>gi|346467231|gb|AEO33460.1| hypothetical protein [Amblyomma maculatum]
Length = 115
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 79/102 (77%), Gaps = 5/102 (4%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
GK KDPNKPKRP + FFVFME FR+QYK+ HPKNKSVA VGKAGGEKWKS+SE++KA +
Sbjct: 3 GKGEKDPNKPKRPPTGFFVFMEGFRKQYKEAHPKNKSVAVVGKAGGEKWKSLSESEKAVF 62
Query: 89 VAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
++KAEK + EY+K + Y + Q +EEES+KS SEVN
Sbjct: 63 LSKAEKLRSEYQKKIDAYEKGQH-----VDEEESDKSKSEVN 99
>gi|116781378|gb|ABK22074.1| unknown [Picea sitchensis]
gi|224284710|gb|ACN40086.1| unknown [Picea sitchensis]
Length = 154
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
Query: 15 LSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGG 74
LS +KP K K KA KDPN+PKRP +AFFV++EEFR+ +K+ HP K V AVGKA G
Sbjct: 26 LSAKEKPNKRQAKP-KAVKDPNQPKRPPTAFFVYLEEFRKTFKQKHPDVKGVTAVGKACG 84
Query: 75 EKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
+KWK MSEA+KAPY+AKA +++ EY+ M Y ++Q G + EESEKS SE+N
Sbjct: 85 DKWKEMSEAEKAPYLAKAAQKRAEYDVTMTAYKKKQEVGVQSATPEESEKSKSELN 140
>gi|414590133|tpg|DAA40704.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 140
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 86/124 (69%), Gaps = 10/124 (8%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K K KDPNKPKRP +AFFVFMEEFR+ YK+ HP K
Sbjct: 24 RARSGGGDSRLSVRKT---------KVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVK 74
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
V+ +GKAGG+ WKS+S+A+KAPYV+KAEK KVEY K M YN +Q+ G P +S+K
Sbjct: 75 QVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQS-GGGPTLSGDSDK 133
Query: 125 SMSE 128
S SE
Sbjct: 134 SKSE 137
>gi|414590134|tpg|DAA40705.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 120
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 86/124 (69%), Gaps = 10/124 (8%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K K KDPNKPKRP +AFFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSGGGDSRLSVRKT---------KVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
V+ +GKAGG+ WKS+S+A+KAPYV+KAEK KVEY K M YN +Q+ G P +S+K
Sbjct: 55 QVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQS-GGGPTLSGDSDK 113
Query: 125 SMSE 128
S SE
Sbjct: 114 SKSE 117
>gi|225448400|ref|XP_002270185.1| PREDICTED: high mobility group B protein 1 isoform 2 [Vitis
vinifera]
Length = 156
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/100 (65%), Positives = 77/100 (77%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L +K K +K A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
KAGGEKWKS+SEADKAPY AKA KRK +YEK M YN++Q
Sbjct: 89 KAGGEKWKSLSEADKAPYEAKAAKRKSDYEKLMAAYNKKQ 128
>gi|407971018|ref|NP_001238631.1| uncharacterized protein LOC100499704 [Glycine max]
gi|255625939|gb|ACU13314.1| unknown [Glycine max]
Length = 166
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 78/97 (80%), Gaps = 3/97 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP SAFFVF+EEFR+ +K ++P K+V+ VGKAGGEKWKS+S A+KAPY +KA
Sbjct: 49 DPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSVVGKAGGEKWKSLSSAEKAPYESKAA 108
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
KRK EYEK +K Y+++QA ++EES+KS SEVN
Sbjct: 109 KRKAEYEKLIKAYDKKQASSA---DDEESDKSKSEVN 142
>gi|414886617|tpg|DAA62631.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 119
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 86/124 (69%), Gaps = 11/124 (8%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSTAGDSRLSVRKT---------KAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN +Q+ P +S+K
Sbjct: 55 QVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNNKQS--GDPTASGDSDK 112
Query: 125 SMSE 128
S SE
Sbjct: 113 SKSE 116
>gi|414886615|tpg|DAA62629.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 123
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 78/113 (69%), Gaps = 9/113 (7%)
Query: 4 GKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP
Sbjct: 3 SRARSTAGDSRLSVRK---------TKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNV 53
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKP 116
K V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN +Q P
Sbjct: 54 KQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNNKQVHLETP 106
>gi|414886614|tpg|DAA62628.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 118
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 78/113 (69%), Gaps = 9/113 (7%)
Query: 4 GKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP
Sbjct: 3 SRARSTAGDSRLSVRK---------TKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNV 53
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKP 116
K V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN +Q P
Sbjct: 54 KQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNNKQVHLETP 106
>gi|302754440|ref|XP_002960644.1| hypothetical protein SELMODRAFT_75453 [Selaginella moellendorffii]
gi|300171583|gb|EFJ38183.1| hypothetical protein SELMODRAFT_75453 [Selaginella moellendorffii]
Length = 134
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 81/104 (77%), Gaps = 5/104 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+PK+PA+AFF+F+EEFR+ YKKDHP K VAA+GKAGG+ WKS+S+ +K PY AKA
Sbjct: 32 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLSDKEKEPYHAKAA 91
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEE 137
KRK +Y+KD++ YN+++ +G+ E E +S+ + + DDDEE
Sbjct: 92 KRKADYDKDLEAYNKKKEDGSAGESEVKSKSAGN-----DDDEE 130
>gi|302803281|ref|XP_002983394.1| hypothetical protein SELMODRAFT_117986 [Selaginella moellendorffii]
gi|300149079|gb|EFJ15736.1| hypothetical protein SELMODRAFT_117986 [Selaginella moellendorffii]
Length = 123
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 80/108 (74%), Gaps = 10/108 (9%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+PK+PA+AFF+F+EEFR+ YKKDHP K VAA+GKAGG+ WKS+S+ +K PY AKA
Sbjct: 18 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLSDKEKEPYHAKAA 77
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDE----DDDEE 137
KRK +Y+KD++ YN+++ EEEE+ SEV + DDDEE
Sbjct: 78 KRKADYDKDLEAYNKKK------EEEEDGSAGESEVKSKSAGNDDDEE 119
>gi|388522261|gb|AFK49192.1| unknown [Lotus japonicus]
Length = 173
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 81/103 (78%), Gaps = 3/103 (2%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
RP SAFFVF+E+FR+ +K ++P K V+AVGKAGGEKWKS+++A+KAPY AKA KRK EY
Sbjct: 52 RPPSAFFVFLEDFRKTFKAENPNVKGVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKAEY 111
Query: 100 EKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE 142
EK + YN +QA T + +EES+KS SE+NDE+D E SG+E
Sbjct: 112 EKLINAYNNKQA-STADDVDEESDKSKSEINDEED--EASGQE 151
>gi|224098541|ref|XP_002311212.1| high mobility group family [Populus trichocarpa]
gi|222851032|gb|EEE88579.1| high mobility group family [Populus trichocarpa]
Length = 179
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 82/112 (73%), Gaps = 4/112 (3%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDP+KPKRP S+FFVF+EEFR+ YK++HP K+V+AVGKAGGEKWKSMS A+KAPY AKA
Sbjct: 51 KDPDKPKRPPSSFFVFLEEFRKIYKQEHPNMKAVSAVGKAGGEKWKSMSAAEKAPYEAKA 110
Query: 93 EKRKVEYEKDMKNYNRRQ----AEGTKPEEEEESEKSMSEVNDEDDDEEGSG 140
+K +Y K M Y+++Q + ++ + S +S SEV+ +DD +E G
Sbjct: 111 AIKKSDYGKLMTAYSKKQETDDGGADEEDDYKHSHRSKSEVDGQDDSDESVG 162
>gi|118484946|gb|ABK94338.1| unknown [Populus trichocarpa]
Length = 171
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 82/112 (73%), Gaps = 4/112 (3%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDP+KPKRP S+FFVF+EEFR+ YK++HP K+V+AVGKAGGEKWKSMS A+KAPY AKA
Sbjct: 51 KDPDKPKRPPSSFFVFLEEFRKIYKQEHPNMKAVSAVGKAGGEKWKSMSAAEKAPYEAKA 110
Query: 93 EKRKVEYEKDMKNYNRRQ----AEGTKPEEEEESEKSMSEVNDEDDDEEGSG 140
+K +Y K M Y+++Q + ++ + S +S SEV+ +DD +E G
Sbjct: 111 AIKKSDYGKLMTAYSKKQETDDGGADEEDDYKHSHRSKSEVDGQDDSDESVG 162
>gi|18419623|gb|AAL69379.1|AF462216_1 HMG-domain containing protein [Narcissus pseudonarcissus]
Length = 106
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 78/106 (73%), Gaps = 8/106 (7%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPA-----KAGRKSGKAAKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A K K KA KDPNKPKRP SAFFVFMEEF
Sbjct: 1 MKGGKSKADTSKKADARLSVKRKAAEKPAKKPVVKKSKAEKDPNKPKRPPSAFFVFMEEF 60
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
R+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK E
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAE 106
>gi|295913307|gb|ADG57910.1| transcription factor [Lycoris longituba]
Length = 138
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 66/81 (81%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP SAFFVFMEEFR+Q+K+ +P NK V+ VGKA G+KWKSMS A+KAPY AKA
Sbjct: 18 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPYEAKAA 77
Query: 94 KRKVEYEKDMKNYNRRQAEGT 114
KRKV+Y K M YN++ A+G
Sbjct: 78 KRKVDYNKTMVAYNKKLADGA 98
>gi|4468042|emb|CAB37859.1| unnamed protein product [Vicia faba var. minor]
Length = 74
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 63/74 (85%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPNKPKRP SAFFVFM +FREQYKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A
Sbjct: 1 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRA 60
Query: 93 EKRKVEYEKDMKNY 106
K+K EYE ++ Y
Sbjct: 61 LKKKEEYEITLQAY 74
>gi|729738|sp|P40621.1|HMGL_WHEAT RecName: Full=HMG1/2-like protein
gi|21803|emb|CAA77641.1| high mobility group protein [Triticum aestivum]
gi|114145392|dbj|BAF30985.1| high mobility globular protein [Triticum aestivum]
Length = 161
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 84/112 (75%), Gaps = 4/112 (3%)
Query: 1 MKGGKSKSDTR-NAKLSVNKKPA---KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQY 56
MKG KSK + +AKL+V K A A K GKA KDPNKPKR SAFFVFM EFRE++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEF 60
Query: 57 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
K+ +PKNKSVAAVGKA GE+WKS+SE++KAPYVAKA K K EY K + YN+
Sbjct: 61 KQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112
>gi|357506009|ref|XP_003623293.1| HMG1/2-like protein [Medicago truncatula]
gi|355498308|gb|AES79511.1| HMG1/2-like protein [Medicago truncatula]
gi|388511215|gb|AFK43669.1| unknown [Medicago truncatula]
Length = 170
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 82/101 (81%), Gaps = 2/101 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP SAFFVF+E+FR+ +K ++P K+V+AVGKAGGEKWKS+++A+KAPY AKA
Sbjct: 47 DPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAA 106
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDD 134
KRKVEYEK M YN + + ++EEES+K SEVN+ED+
Sbjct: 107 KRKVEYEKLMNAYNNKPSSAD--DDEEESDKDNSEVNNEDE 145
>gi|359386154|gb|AEV43366.1| group B HMG-box protein [Citrus sinensis]
Length = 165
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 92/122 (75%), Gaps = 1/122 (0%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L ++ K + A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
KAGGEKWKS+++A+KAP+ AKA KRK++YEK M YN++Q E+EEESEKS SEV+
Sbjct: 89 KAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQESTED-EDEEESEKSKSEVH 147
Query: 131 DE 132
D+
Sbjct: 148 DD 149
>gi|255571919|ref|XP_002526902.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223533801|gb|EEF35533.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 190
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 77/100 (77%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R+A L NK K +K A KDPN+PKRP SAFFVF+E+FR+ YK++HP K+V+AVG
Sbjct: 29 RSAALKPNKNSKKVTKKDKPAKKDPNRPKRPPSAFFVFLEDFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
KAGGEKWKSMS A+K+P+ AKA KRK +YEK M YN++Q
Sbjct: 89 KAGGEKWKSMSNAEKSPFEAKAAKRKSDYEKLMTAYNKKQ 128
>gi|106879575|emb|CAJ38371.1| HMG-protein [Plantago major]
Length = 212
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 74/91 (81%), Gaps = 1/91 (1%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
RP SAFFVF+EEFR+ +KK++P K+V+AVGKAGGEKWKS+++A+KAPY AKA KRK EY
Sbjct: 101 RPPSAFFVFLEEFRQTFKKENPNIKAVSAVGKAGGEKWKSLTDAEKAPYEAKAAKRKSEY 160
Query: 100 EKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
EK M YN++Q E + E +E SEKS SEV+
Sbjct: 161 EKLMNAYNKKQ-ESSADEADEGSEKSRSEVH 190
>gi|157382900|gb|ABV48885.1| high mobility group protein B3 [Physcomitrella patens]
Length = 158
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 74/97 (76%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP +AFF+F+ EFRE +K+++P K V AVGKAGGEKWKSMSEA+K P++ KA
Sbjct: 49 DPNAPKRPPTAFFIFLNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEAEKQPFMTKAV 108
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
++K EY+K + YN++Q E + E EES+K SE+N
Sbjct: 109 QKKSEYDKTISAYNKKQDEDAEEVEAEESDKCKSEIN 145
>gi|168028752|ref|XP_001766891.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681870|gb|EDQ68293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 160
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 64/77 (83%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRPA+AFF+F+ EFRE +KK++P K VAAVGKAGGEKWKSMSEA+K PY+ KA
Sbjct: 53 DPNAPKRPATAFFIFLNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEAEKQPYMQKAV 112
Query: 94 KRKVEYEKDMKNYNRRQ 110
++K EY+K + YN++Q
Sbjct: 113 QKKSEYDKTLSAYNKKQ 129
>gi|125583208|gb|EAZ24139.1| hypothetical protein OsJ_07880 [Oryza sativa Japonica Group]
Length = 170
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 86/123 (69%), Gaps = 6/123 (4%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
S+ K AG++ K A KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GE
Sbjct: 38 SMLKAAGGAGKR--KKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGE 95
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK----PEEEEESEKSMSEVND 131
KW++MSE +KAPYV KA ++K +YEK N++++++ +K ++ E S+KS SEV+D
Sbjct: 96 KWRAMSEQEKAPYVDKAGQKKQDYEKTKANFDKKESTSSKKAKTHDDGEGSDKSKSEVDD 155
Query: 132 EDD 134
+ D
Sbjct: 156 DQD 158
>gi|255566393|ref|XP_002524182.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223536551|gb|EEF38197.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 155
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 70/87 (80%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+ RK +KD + PKRPASAFF+FM+EFR+ +K+ +P NK+V+AVGKAGGEKWKS+SE
Sbjct: 34 SSRKKKNVSKDTDAPKRPASAFFIFMDEFRKYFKEKYPDNKAVSAVGKAGGEKWKSLSET 93
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
DKAPY+ KA KRK EYEK ++ Y +++
Sbjct: 94 DKAPYLEKALKRKAEYEKVLEAYKQQK 120
>gi|357136925|ref|XP_003570053.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 144
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 75/97 (77%), Gaps = 3/97 (3%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
RP SAFFVFM EFR++Y+ +HP NKSVA V KA GEKW+SMS+ADKAPYV KA ++K +Y
Sbjct: 36 RPPSAFFVFMSEFRQEYQAEHPNNKSVANVSKAAGEKWRSMSDADKAPYVEKAGQKKQDY 95
Query: 100 EKDMKNYNRRQAEG---TKPEEEEESEKSMSEVNDED 133
EK ++++++ TK +++E S+KS SEV+DED
Sbjct: 96 EKTKATFDKKESTSSKKTKTQDDEGSDKSKSEVDDED 132
>gi|195619220|gb|ACG31440.1| HMG1/2-like protein [Zea mays]
Length = 139
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 81/112 (72%), Gaps = 6/112 (5%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SAFFVFM EFR+QY+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K
Sbjct: 32 KPKRPPSAFFVFMSEFRQQYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKK 91
Query: 97 VEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE--DDDE 146
+YEK N++++++ +K + E+ + S SEV+DED GS +E DDDE
Sbjct: 92 QDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDED----GSSDEENDDDE 139
>gi|47027098|gb|AAT08762.1| HMG transcription factor [Hyacinthus orientalis]
Length = 158
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 82/118 (69%), Gaps = 9/118 (7%)
Query: 5 KSKSDTRN---AKLSVNKKPAKAGRKSGKA------AKDPNKPKRPASAFFVFMEEFREQ 55
KSK+DT N AKLSV +K A+ K KDPNKPKRP SAFFVFME+FR+Q
Sbjct: 1 KSKADTSNKADAKLSVKRKAAEKPAKKPAPAKKSKAVKDPNKPKRPPSAFFVFMEDFRKQ 60
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
+K+ +P NK V+ VGKA KWK+MS A+KAP+ A+A KRK +Y K M YN++Q+EG
Sbjct: 61 FKEKNPNNKQVSVVGKACWGKWKTMSAAEKAPFEARAAKRKADYNKVMVAYNKKQSEG 118
>gi|388497798|gb|AFK36965.1| unknown [Medicago truncatula]
Length = 170
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 81/101 (80%), Gaps = 2/101 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP SAFFVF+E+FR+ +K ++P K+V+AVGKAGG KWKS+++A+KAPY AKA
Sbjct: 47 DPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGGKWKSLTKAEKAPYEAKAV 106
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDD 134
KRKVEYEK M YN + + ++EEES+K SEVN+ED+
Sbjct: 107 KRKVEYEKLMDAYNNKPSSAD--DDEEESDKDNSEVNNEDE 145
>gi|157382898|gb|ABV48884.1| high mobility group protein B2 [Physcomitrella patens]
Length = 165
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 78/101 (77%), Gaps = 2/101 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRPA+AFF+F+ EFRE +KK++P K VAAVGKAGGEKWKSMSEA+K PY+ KA
Sbjct: 53 DPNAPKRPATAFFIFLNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEAEKQPYMQKAV 112
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESE--KSMSEVNDE 132
++K EY+K + YN++Q + + EE E E KS SE+ND+
Sbjct: 113 QKKSEYDKTLSAYNKKQDDDEEDEEVEAEESDKSKSEINDD 153
>gi|18700443|dbj|BAB85204.1| high mobility group box protein 2 [Oryza sativa Japonica Group]
gi|125540625|gb|EAY87020.1| hypothetical protein OsI_08417 [Oryza sativa Indica Group]
Length = 145
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 77/103 (74%), Gaps = 4/103 (3%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GEKW++MSE +KAPYV KA ++
Sbjct: 31 GKPKRPPSAFFVFMSEFRQEYQAAHPGNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQK 90
Query: 96 KVEYEKDMKNYNRRQAEGTK----PEEEEESEKSMSEVNDEDD 134
K +YEK N++++++ +K ++ E S+KS SEV+D+ D
Sbjct: 91 KQDYEKTKANFDKKESTSSKKAKTHDDGEGSDKSKSEVDDDQD 133
>gi|115447831|ref|NP_001047695.1| Os02g0670400 [Oryza sativa Japonica Group]
gi|50251344|dbj|BAD28320.1| putative high mobility group protein [Oryza sativa Japonica Group]
gi|50252158|dbj|BAD28154.1| putative high mobility group protein [Oryza sativa Japonica Group]
gi|113537226|dbj|BAF09609.1| Os02g0670400 [Oryza sativa Japonica Group]
Length = 145
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 77/103 (74%), Gaps = 4/103 (3%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GEKW++MSE +KAPYV KA ++
Sbjct: 31 GKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQK 90
Query: 96 KVEYEKDMKNYNRRQAEGTK----PEEEEESEKSMSEVNDEDD 134
K +YEK N++++++ +K ++ E S+KS SEV+D+ D
Sbjct: 91 KQDYEKTKANFDKKESTSSKKAKTHDDGEGSDKSKSEVDDDQD 133
>gi|1845195|emb|CAA69605.1| HMGc1 [Zea mays]
gi|5441504|emb|CAB46753.1| HMGc1 protein [Zea mays]
gi|194690322|gb|ACF79245.1| unknown [Zea mays]
gi|194704052|gb|ACF86110.1| unknown [Zea mays]
gi|219885481|gb|ACL53115.1| unknown [Zea mays]
gi|413938184|gb|AFW72735.1| HMG-like nucleosome/chromatin assembly factor D isoform 1 [Zea
mays]
gi|413938185|gb|AFW72736.1| HMG-like nucleosome/chromatin assembly factor D isoform 2 [Zea
mays]
Length = 139
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 81/112 (72%), Gaps = 6/112 (5%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SAFFVFM EFR++Y+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKK 91
Query: 97 VEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE--DDDE 146
+YEK N++++++ +K + E+ + S SEV+DED GS +E DDDE
Sbjct: 92 QDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDED----GSSDEENDDDE 139
>gi|449468356|ref|XP_004151887.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449517965|ref|XP_004166014.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
Length = 142
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 84/138 (60%), Gaps = 9/138 (6%)
Query: 11 RNAKLSVNKKP-------AKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKDHPK 62
RNA ++ +KKP KA KS K+ K D N PKRPA+ FFVFMEEFR+ YK+ P
Sbjct: 5 RNAVVT-HKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPD 63
Query: 63 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEES 122
K+ VGK GGEKWKSMS+A+KAPY KA KRK EYE ++ Y ES
Sbjct: 64 AKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPTES 123
Query: 123 EKSMSEVNDEDDDEEGSG 140
+KS SEVND+ + E S
Sbjct: 124 QKSTSEVNDDTEQEASSS 141
>gi|950053|emb|CAA90679.1| HMG1/2-like protein [Hordeum vulgare subsp. vulgare]
Length = 160
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 101/145 (69%), Gaps = 14/145 (9%)
Query: 1 MKGGKSKSDTR-NAKLSVNKKPA---KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQY 56
MKG KSK + + KL+V K A A K GKA KDPNKPKR SAFFVFM EFRE++
Sbjct: 1 MKGAKSKGAAKADTKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEF 60
Query: 57 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKP 116
K+ +PKNKSVAAVGKA GE+WKS+SE++KAP+VAKA K K EY K + +YN+ ++ P
Sbjct: 61 KQKNPKNKSVAAVGKAAGERWKSLSESEKAPFVAKANKLKGEYNKAIASYNKGESTTAAP 120
Query: 117 EE----------EEESEKSMSEVND 131
++ EEES+KS SE+ND
Sbjct: 121 KKASSKEVEEEDEEESDKSKSEIND 145
>gi|162461550|ref|NP_001105075.1| high mobility group box protein2 [Zea mays]
gi|17017394|gb|AAL33651.1|AF440222_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 139
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 80/112 (71%), Gaps = 6/112 (5%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SAFF FM EFR++Y+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K
Sbjct: 32 KPKRPPSAFFAFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKK 91
Query: 97 VEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE--DDDE 146
+YEK N++++++ +K + E+ + S SEV+DED GS +E DDDE
Sbjct: 92 QDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDED----GSSDEENDDDE 139
>gi|15237040|ref|NP_195282.1| high mobility group B5 protein [Arabidopsis thaliana]
gi|75219649|sp|O49597.1|HMGB5_ARATH RecName: Full=High mobility group B protein 5; AltName: Full=High
mobility group protein D; Short=AtHMGdelta; Short=HMG
delta; AltName: Full=Nucleosome/chromatin assembly
factor group D 05; Short=Nucleosome/chromatin assembly
factor group D 5
gi|2832363|emb|CAA74404.1| HMG protein [Arabidopsis thaliana]
gi|3367575|emb|CAA20027.1| HMG delta protein [Arabidopsis thaliana]
gi|7270508|emb|CAB80273.1| HMG delta protein [Arabidopsis thaliana]
gi|21553743|gb|AAM62836.1| HMG delta protein [Arabidopsis thaliana]
gi|98961063|gb|ABF59015.1| At4g35570 [Arabidopsis thaliana]
gi|222423786|dbj|BAH19859.1| AT4G35570 [Arabidopsis thaliana]
gi|332661132|gb|AEE86532.1| high mobility group B5 protein [Arabidopsis thaliana]
Length = 125
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 70/99 (70%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G K GK KDPN+PK+P S FFVF+++FR+++ +P NKSV VG+A G+KWK+M+E +
Sbjct: 21 GNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEE 80
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
+AP+VAK++ +K EY M+ YN A G K ++E +
Sbjct: 81 RAPFVAKSQSKKTEYAVTMQQYNMELANGNKTTGDDEKQ 119
>gi|388511193|gb|AFK43658.1| unknown [Lotus japonicus]
Length = 92
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 63/82 (76%)
Query: 49 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
M EFR Q+KKD+P NKSVAAVGKA G KWKSM++A+KAPYVA+AEK K EYEK ++ YN
Sbjct: 1 MSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDAEKAPYVARAEKAKEEYEKTLRAYNN 60
Query: 109 RQAEGTKPEEEEESEKSMSEVN 130
AE EEE S+KS SEVN
Sbjct: 61 GLAESKGSAEEEGSDKSKSEVN 82
>gi|302796105|ref|XP_002979815.1| hypothetical protein SELMODRAFT_18312 [Selaginella moellendorffii]
gi|302807533|ref|XP_002985461.1| hypothetical protein SELMODRAFT_18313 [Selaginella moellendorffii]
gi|300146924|gb|EFJ13591.1| hypothetical protein SELMODRAFT_18313 [Selaginella moellendorffii]
gi|300152575|gb|EFJ19217.1| hypothetical protein SELMODRAFT_18312 [Selaginella moellendorffii]
Length = 84
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 63/84 (75%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+K KA+KDPN PKRP +AFFVF+E FR+QYK+DHP K VAAVGKA G+KW MSE++K
Sbjct: 1 KKEKKASKDPNLPKRPPTAFFVFLESFRQQYKEDHPDVKGVAAVGKAAGDKWSKMSESEK 60
Query: 86 APYVAKAEKRKVEYEKDMKNYNRR 109
A YV KA + + +Y + M Y ++
Sbjct: 61 AVYVNKAAQLRADYAESMAAYKKK 84
>gi|302790391|ref|XP_002976963.1| hypothetical protein SELMODRAFT_175895 [Selaginella moellendorffii]
gi|300155441|gb|EFJ22073.1| hypothetical protein SELMODRAFT_175895 [Selaginella moellendorffii]
Length = 156
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 65/88 (73%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
A DPN+PKRPA+AFFVF+EE+R+ +K HP K VAAVGKAGG+ WK ++E +K PY K
Sbjct: 49 AADPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLTEEEKKPYHDK 108
Query: 92 AEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
A ++K +YEK + Y ++Q E K E+E
Sbjct: 109 AAQKKADYEKTLTEYKKKQEEDAKNEKE 136
>gi|371721822|gb|AEX55234.1| HMG transcription factor [Allium sativum]
Length = 115
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 61/76 (80%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKRP SAFFVFME+FR+ +K+ +P NK V+AVGKA G+KWKS++ A+KAPY AKA KRK
Sbjct: 2 PKRPPSAFFVFMEDFRKIFKEKNPDNKQVSAVGKAAGDKWKSLTAAEKAPYEAKAAKRKA 61
Query: 98 EYEKDMKNYNRRQAEG 113
EY K M YN++ ++G
Sbjct: 62 EYTKTMAAYNKKLSDG 77
>gi|339716048|gb|AEJ88271.1| putative HMG DNA-binding protein [Wolffia arrhiza]
Length = 148
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 95/133 (71%), Gaps = 3/133 (2%)
Query: 1 MKGG-KSKSDTRNA--KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYK 57
MKGG KSKS+ A +LSV KK K+ K AKDPNKPKR SAFFVF+EEFR++YK
Sbjct: 1 MKGGAKSKSEPTKADSRLSVKKKAPARAAKTAKKAKDPNKPKRAPSAFFVFLEEFRKEYK 60
Query: 58 KDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPE 117
+ HP NKSVAAVGKA G KW+SMS++DKAPYV K+ KRK E +K ++Q ++
Sbjct: 61 EKHPDNKSVAAVGKAAGAKWRSMSDSDKAPYVNKSNKRKAEVQKTAAVNAKKQETSSRAA 120
Query: 118 EEEESEKSMSEVN 130
+++S+KS SEVN
Sbjct: 121 ADDDSDKSKSEVN 133
>gi|357508231|ref|XP_003624404.1| High mobility group protein [Medicago truncatula]
gi|355499419|gb|AES80622.1| High mobility group protein [Medicago truncatula]
Length = 144
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 64/80 (80%), Gaps = 1/80 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
KA DP+KPKRP S FF+FM +FR +++K++P NK V+ VGKA GEKW+SMS+ DKAPYV
Sbjct: 5 KAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSD-DKAPYV 63
Query: 90 AKAEKRKVEYEKDMKNYNRR 109
A AEK+K+EY K + YN++
Sbjct: 64 ADAEKKKMEYVKAIHAYNKK 83
>gi|116785888|gb|ABK23898.1| unknown [Picea sitchensis]
Length = 220
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 78/121 (64%), Gaps = 5/121 (4%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
R K A+DPN+PK+PA+AFFVFM++FR+ YK+ +P K A VGK GG KWK+MS+ DK
Sbjct: 96 RTREKKARDPNQPKKPATAFFVFMDDFRKTYKETNPDVKGAAQVGKEGGLKWKAMSDEDK 155
Query: 86 APYVAKAEKRKVEYEKDMKNYNR-RQAEGTKPEEEEESEKSMS----EVNDEDDDEEGSG 140
PY+ KA + K EYEK M Y + + E K + E E + S +VNDE+ + G G
Sbjct: 156 KPYLEKAAELKAEYEKAMSKYQQDLKDEAAKSSDGGEDEVAKSDADGDVNDEEANSNGDG 215
Query: 141 E 141
E
Sbjct: 216 E 216
>gi|413935044|gb|AFW69595.1| high mobility group protein1 [Zea mays]
Length = 97
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 70/88 (79%), Gaps = 7/88 (7%)
Query: 1 MKGGKSKSDTR-NAKLSVNKK----PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V K PAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 58
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+K+ +PKNKSVAAVGKA G++WKS+SE+
Sbjct: 59 FKEKNPKNKSVAAVGKAAGDRWKSLSES 86
>gi|359484115|ref|XP_002267697.2| PREDICTED: high mobility group B protein 7-like [Vitis vinifera]
gi|147815109|emb|CAN61363.1| hypothetical protein VITISV_034306 [Vitis vinifera]
gi|297742725|emb|CBI35359.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 66/88 (75%), Gaps = 2/88 (2%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KP K+ R + KDPN PKRP +AFF+FM++FR++YK+ +P +K+V+ V K GGEKWKS
Sbjct: 83 KPKKSRR--LRKVKDPNMPKRPPTAFFLFMDDFRKEYKESNPDSKNVSVVAKEGGEKWKS 140
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYN 107
M++ +K PYV KA + K EY+K M+ YN
Sbjct: 141 MTDEEKKPYVDKAAELKAEYDKAMETYN 168
>gi|302797885|ref|XP_002980703.1| hypothetical protein SELMODRAFT_38818 [Selaginella moellendorffii]
gi|300151709|gb|EFJ18354.1| hypothetical protein SELMODRAFT_38818 [Selaginella moellendorffii]
Length = 83
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 61/81 (75%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A DPN+PKRPA+AFFVF+EE+R+ +K HP K VAAVGKAGG+ WK ++E +K PY
Sbjct: 3 KNAADPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLTEEEKKPYH 62
Query: 90 AKAEKRKVEYEKDMKNYNRRQ 110
KA ++K +YEK + Y ++Q
Sbjct: 63 DKAAQKKADYEKTLTEYKKKQ 83
>gi|194700664|gb|ACF84416.1| unknown [Zea mays]
gi|194701704|gb|ACF84936.1| unknown [Zea mays]
gi|413923412|gb|AFW63344.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
gi|413923413|gb|AFW63345.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 139
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GEKW+SMSE +K PYV +A ++K
Sbjct: 33 KPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKK 92
Query: 97 VEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEV 129
+YEK N +++ +K + ++ + S SEV
Sbjct: 93 QDYEKTKANI-EKESTSSKKAKTDDDDGSKSEV 124
>gi|168050181|ref|XP_001777538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671023|gb|EDQ57581.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 314
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 56/76 (73%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
AAKD + PKRP SA+F+FME FR+++K +P K V A KAGGEKW SMSE +KAPYVA
Sbjct: 186 AAKDSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMSEEEKAPYVA 245
Query: 91 KAEKRKVEYEKDMKNY 106
+A RK +YE+ M Y
Sbjct: 246 EASVRKGQYEQAMTAY 261
>gi|162460809|ref|NP_001105483.1| high mobility group protein3 [Zea mays]
gi|1845197|emb|CAA69606.1| HMGc2 [Zea mays]
gi|223947405|gb|ACN27786.1| unknown [Zea mays]
gi|413923414|gb|AFW63346.1| HMGc2 protein [Zea mays]
Length = 138
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 66/93 (70%), Gaps = 2/93 (2%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GEKW+SMSE +K PYV +A ++K
Sbjct: 33 KPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKK 92
Query: 97 VEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEV 129
+YEK N + + +K + ++ + S SEV
Sbjct: 93 QDYEKTKANIEK--STSSKKAKTDDDDGSKSEV 123
>gi|157382896|gb|ABV48883.1| high mobility group protein B1 [Physcomitrella patens]
Length = 215
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 56/76 (73%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
AAKD + PKRP SA+F+FME FR+++K +P K V A KAGGEKW SMSE +KAPYVA
Sbjct: 130 AAKDSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMSEEEKAPYVA 189
Query: 91 KAEKRKVEYEKDMKNY 106
+A RK +YE+ M Y
Sbjct: 190 EASVRKGQYEQAMTAY 205
>gi|357484153|ref|XP_003612363.1| HMG1/2-like protein [Medicago truncatula]
gi|355513698|gb|AES95321.1| HMG1/2-like protein [Medicago truncatula]
Length = 94
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 63/85 (74%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K+ SD + A + +K A G K K AKDPNKPKRP SAFFVFM EFRE++KK++P NK
Sbjct: 3 KAVSDAKPADNRLKRKGAGTGTKQSKKAKDPNKPKRPPSAFFVFMSEFRERFKKENPSNK 62
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYV 89
SVA VGKAGG++WK++S+A + +
Sbjct: 63 SVAVVGKAGGKEWKALSDAVRILLL 87
>gi|359486418|ref|XP_003633441.1| PREDICTED: high mobility group B protein 1 [Vitis vinifera]
Length = 151
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 76/120 (63%), Gaps = 16/120 (13%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L +K K +K A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+
Sbjct: 29 RKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS--- 85
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
ADKAPY AKA KRK +YEK M YN++Q E ++EEES++S SEVN
Sbjct: 86 ------------ADKAPYEAKAAKRKSDYEKLMAAYNKKQ-ESMADDDEEESDRSKSEVN 132
>gi|388499756|gb|AFK37944.1| unknown [Lotus japonicus]
Length = 197
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 73/105 (69%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
K +DPN+PKRP +AFFVF+++FR+++K+ +P +K V VGK GGEKW++M++ +K PY
Sbjct: 93 AKKVEDPNQPKRPPTAFFVFLDDFRKEFKEANPGSKDVKRVGKEGGEKWRAMTDEEKKPY 152
Query: 89 VAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDED 133
+ K + K EYEK M NYN + E + ++E + + E+ DE+
Sbjct: 153 LEKVAELKEEYEKAMANYNAAEDEEKEEADKEAAPTEIEELTDEE 197
>gi|297798364|ref|XP_002867066.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297312902|gb|EFH43325.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 125
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 82/121 (67%), Gaps = 4/121 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MK +++ ++R S + + G K GK KDPNKPK+P S FFVF+++FR ++ +
Sbjct: 1 MKDNQTEVESR----STDDRLKVRGNKGGKKTKDPNKPKKPPSPFFVFLDDFRREFNLAN 56
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
P NKSVA+VGKA G+KWKSM+E DKAP+VAKA+ +K EY M+ YN A GTK ++
Sbjct: 57 PDNKSVASVGKAAGKKWKSMTEEDKAPFVAKAKSKKTEYAATMQQYNMELANGTKTAGDD 116
Query: 121 E 121
E
Sbjct: 117 E 117
>gi|449464956|ref|XP_004150195.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
gi|449531370|ref|XP_004172659.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
Length = 207
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 59/81 (72%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K GK KDPN PKRP +AFF+FM++FR+ YK+ +P +K V V K GGEKWKSM++ +K
Sbjct: 100 KKGKKDKDPNAPKRPPTAFFIFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKK 159
Query: 87 PYVAKAEKRKVEYEKDMKNYN 107
PY KA + K EYEK +++ N
Sbjct: 160 PYQDKAAELKAEYEKALESRN 180
>gi|449521910|ref|XP_004167972.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 112
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 57/73 (78%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A + +K + +K KA KDPNKPKRP SAFFVF+EEFR++YK+++P K+V+AVG
Sbjct: 28 RKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVKAVSAVG 87
Query: 71 KAGGEKWKSMSEA 83
KAGGEKWKS+S A
Sbjct: 88 KAGGEKWKSLSHA 100
>gi|297736623|emb|CBI25494.3| unnamed protein product [Vitis vinifera]
Length = 128
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L +K K +K A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 53 RKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 112
Query: 71 KAGGEKWKSMSEA 83
KAGGEKWKS+SEA
Sbjct: 113 KAGGEKWKSLSEA 125
>gi|125559825|gb|EAZ05273.1| hypothetical protein OsI_27476 [Oryza sativa Indica Group]
gi|125559834|gb|EAZ05282.1| hypothetical protein OsI_27485 [Oryza sativa Indica Group]
Length = 204
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 50/64 (78%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KRP +AFF+FM +FR++YK +HP NKSV+AV K GGE+WKSMS+ DK PY+ KA + K
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELK 150
Query: 97 VEYE 100
EY
Sbjct: 151 AEYH 154
>gi|115474323|ref|NP_001060758.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|38637289|dbj|BAD03552.1| putative HMG type nucleosome/chromatin assembly factor D [Oryza
sativa Japonica Group]
gi|113622727|dbj|BAF22672.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|125601889|gb|EAZ41214.1| hypothetical protein OsJ_25719 [Oryza sativa Japonica Group]
gi|213959174|gb|ACJ54921.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215697671|dbj|BAG91665.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 50/64 (78%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KRP +AFF+FM +FR++YK +HP NKSV+AV K GGE+WKSMS+ DK PY+ KA + K
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELK 150
Query: 97 VEYE 100
EY
Sbjct: 151 AEYH 154
>gi|293333310|ref|NP_001168929.1| uncharacterized protein LOC100382741 [Zea mays]
gi|223973791|gb|ACN31083.1| unknown [Zea mays]
Length = 204
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 49/61 (80%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SAFFVFM EFR++Y+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKK 91
Query: 97 V 97
+
Sbjct: 92 L 92
>gi|351722065|ref|NP_001236719.1| uncharacterized protein LOC100306558 [Glycine max]
gi|255628875|gb|ACU14782.1| unknown [Glycine max]
Length = 209
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 57/79 (72%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP +AFFVF+++FR+ +K+ +P +K V VGK GEKW+SM++ +K PY+ K
Sbjct: 99 DPNMPKRPPTAFFVFLDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMTDEEKKPYLDKVA 158
Query: 94 KRKVEYEKDMKNYNRRQAE 112
+ K EYEK M++Y Q E
Sbjct: 159 ELKEEYEKAMESYEAGQDE 177
>gi|359481661|ref|XP_002279947.2| PREDICTED: high mobility group B protein 1-like [Vitis vinifera]
gi|147815135|emb|CAN74566.1| hypothetical protein VITISV_023651 [Vitis vinifera]
gi|297740214|emb|CBI30396.3| unnamed protein product [Vitis vinifera]
Length = 168
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
RP SAFFVF+EEFR+ +KK++P K+V+AVGKAGGE+WKS+SEA+KAPY AKA K+K EY
Sbjct: 58 RPPSAFFVFLEEFRKVFKKENPNVKAVSAVGKAGGERWKSLSEAEKAPYEAKAAKKKAEY 117
Query: 100 EKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
EK M YN++Q E T + +EES++S SEVN
Sbjct: 118 EKIMNAYNKKQ-ESTADDGDEESDRSKSEVN 147
>gi|427794389|gb|JAA62646.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 604
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A+D NKPKRP +AF +FM +FR++ P+ VAA+ K GGE+W+SMSE DK PYV
Sbjct: 250 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYV 308
Query: 90 AKAEKRKVEYEKDMKNYNRRQ 110
+ + K++YE++M+ Y R+Q
Sbjct: 309 ERQNEEKMKYEQNMEEYRRKQ 329
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKR +A+ F + +RE+ KK + + GK KW +MS+ DK P+++ A + +
Sbjct: 181 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQPFLSAAARDRE 240
Query: 98 EYEKDMKNY 106
Y+++M Y
Sbjct: 241 RYKREMAVY 249
>gi|346472777|gb|AEO36233.1| hypothetical protein [Amblyomma maculatum]
Length = 208
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 53/68 (77%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
NKPKR +AFF+FM++FR++YK+ HP NKSVA+V K GGE+W+SM+ +K PY +A +
Sbjct: 102 NKPKRAPTAFFLFMDDFRKEYKELHPDNKSVASVAKEGGERWRSMTIEEKKPYTDRAAEL 161
Query: 96 KVEYEKDM 103
K EY K++
Sbjct: 162 KAEYVKEI 169
>gi|357517687|ref|XP_003629132.1| HMG1/2-like protein [Medicago truncatula]
gi|355523154|gb|AET03608.1| HMG1/2-like protein [Medicago truncatula]
Length = 75
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K K+D++ A + +K A AGRK + KAAKDPNKPKRP SAFFVFM +FREQYKKDHP N
Sbjct: 3 KVKADSKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNN 62
Query: 64 KSVAAV 69
KSVAA+
Sbjct: 63 KSVAAL 68
>gi|427793707|gb|JAA62305.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 529
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A+D NKPKRP +AF +FM +FR++ P+ VAA+ K GGE+W+SMSE DK PYV
Sbjct: 271 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYV 329
Query: 90 AKAEKRKVEYEKDMKNYNRRQ 110
+ + K++YE++M+ Y R+Q
Sbjct: 330 ERQNEEKMKYEQNMEEYRRKQ 350
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKR +A+ F + +RE+ KK + + GK KW +MS+ DK P+++ A + +
Sbjct: 202 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQPFLSAAARDRE 261
Query: 98 EYEKDMKNY 106
Y+++M Y
Sbjct: 262 RYKREMAVY 270
>gi|356536465|ref|XP_003536758.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 200
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 56/79 (70%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP +AFF F+++FR+ +K+ +P +K V VGK GEKW+SM++ +K PY+ K
Sbjct: 99 DPNMPKRPPTAFFAFLDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMTDEEKKPYLDKVA 158
Query: 94 KRKVEYEKDMKNYNRRQAE 112
+ K EYEK M++Y Q E
Sbjct: 159 ELKAEYEKAMESYEAGQDE 177
>gi|427793709|gb|JAA62306.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 640
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A+D NKPKRP +AF +FM +FR++ P+ VAA+ K GGE+W+SMSE DK PYV
Sbjct: 286 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYV 344
Query: 90 AKAEKRKVEYEKDMKNYNRRQ 110
+ + K++YE++M+ Y R+Q
Sbjct: 345 ERQNEEKMKYEQNMEEYRRKQ 365
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKR +A+ F + +RE+ KK + + GK KW +MS+ DK P+++ A + +
Sbjct: 217 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQPFLSAAARDRE 276
Query: 98 EYEKDMKNY 106
Y+++M Y
Sbjct: 277 RYKREMAVY 285
>gi|427780835|gb|JAA55869.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 508
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A+D NKPKRP +AF +FM +FR++ P+ VAA+ K GGE+W+SMSE DK PYV
Sbjct: 250 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYV 308
Query: 90 AKAEKRKVEYEKDMKNYNRRQ 110
+ + K++YE++M+ Y R+Q
Sbjct: 309 ERQNEEKMKYEQNMEEYRRKQ 329
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKR +A+ F + +RE+ KK + + GK KW +MS+ DK P+++ A + +
Sbjct: 181 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQPFLSAAARDRE 240
Query: 98 EYEKDMKNY 106
Y+++M Y
Sbjct: 241 RYKREMAVY 249
>gi|413938186|gb|AFW72737.1| hypothetical protein ZEAMMB73_544458 [Zea mays]
Length = 96
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 70/100 (70%), Gaps = 6/100 (6%)
Query: 49 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
M EFR++Y+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K +YEK N+++
Sbjct: 1 MSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKKQDYEKTKANFDK 60
Query: 109 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE--DDDE 146
+++ +K + E+ + S SEV+DED GS +E DDDE
Sbjct: 61 KESTSSKKAKTEDEDGSKSEVDDED----GSSDEENDDDE 96
>gi|357135842|ref|XP_003569517.1| PREDICTED: high mobility group B protein 14-like [Brachypodium
distachyon]
Length = 127
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
S KP RK G DP +PK+P +AFF FME+FR+++K ++P KS+ +G+A GE
Sbjct: 22 SPRTKPRPEPRKKGTVG-DPRRPKKPPTAFFYFMEDFRDKFKAENPSVKSMQDIGRACGE 80
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEE 118
KW M+ +K Y A +R+ E+EK M YN+++ G EE
Sbjct: 81 KWNKMAFEEKVKYYDLATERRAEFEKAMAQYNKKKISGELSEE 123
>gi|225463454|ref|XP_002275908.1| PREDICTED: high mobility group B protein 14 [Vitis vinifera]
gi|297740668|emb|CBI30850.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 71/106 (66%), Gaps = 3/106 (2%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
NK AK ++S + D KPK+P +AFF F+E+FR+++++ +P KS+ +GKA GEKW
Sbjct: 70 NKAKAKTKKRSQRV--DSKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKW 127
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
K+M+ +K Y A +++ E+++ M +Y +RQ G + EE E+SE
Sbjct: 128 KTMTYEEKVQYYDIATEKRAEFDRAMADYIKRQESG-EDEEIEDSE 172
>gi|195618458|gb|ACG31059.1| HMG1/2-like protein [Zea mays]
gi|195640852|gb|ACG39894.1| HMG1/2-like protein [Zea mays]
gi|223975443|gb|ACN31909.1| unknown [Zea mays]
gi|413925109|gb|AFW65041.1| HMG type nucleosome/chromatin assembly factor DNucleasome/chromatin
assembly factor D protein NFD106 [Zea mays]
Length = 212
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KR +AFF+FM++FR+++K HP NKSVA V K GGE+WKSM++ +K PY+ KA + K
Sbjct: 91 KRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVAKEGGERWKSMTDEEKKPYIEKAAELK 150
Query: 97 VEYE 100
E E
Sbjct: 151 AEAE 154
>gi|388495062|gb|AFK35597.1| unknown [Lotus japonicus]
Length = 162
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KKP KA +K+ K D NKPK+P +AFF F+E+FR++++ +P K++ +GK+ GEKW
Sbjct: 51 TKKP-KAKQKTSKQRIDANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKW 109
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111
K+M+ +K Y A +++ E+++ M YN++
Sbjct: 110 KTMTYEEKVQYYDIATEKRAEFDRAMTEYNKKMV 143
>gi|221220618|gb|ACM08970.1| High mobility group protein B3 [Salmo salar]
gi|223646914|gb|ACN10215.1| High mobility group protein B3 [Salmo salar]
gi|223672777|gb|ACN12570.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ KA KDPN PKRP S FFVF E R + K HP N + V K GE W ++++++
Sbjct: 82 GKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHP-NFGIGDVAKKLGEMWNNLTDSN 140
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K PY+AKA K K +Y+KD+ +Y
Sbjct: 141 KQPYLAKANKLKEKYQKDVADY 162
>gi|221219912|gb|ACM08617.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ KA KDPN PKRP S FFVF E R + K HP N + V K GE W ++++++
Sbjct: 82 GKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHP-NFGIGDVAKKLGEMWNNLTDSN 140
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K PY+AKA K K +Y+KD+ +Y
Sbjct: 141 KQPYLAKANKLKEKYQKDVADY 162
>gi|221220328|gb|ACM08825.1| High mobility group protein B3 [Salmo salar]
Length = 203
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ KA KDPN PKRP S FFVF E R + K HP N + V K GE W ++++++
Sbjct: 82 GKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHP-NFGIGDVAKKLGEMWNNLTDSN 140
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K PY+AKA K K +Y+KD+ +Y
Sbjct: 141 KQPYLAKANKLKEKYQKDVADY 162
>gi|162462896|ref|NP_001105076.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|17017396|gb|AAL33652.1|AF440223_1 HMG type nucleosome/chromatin assembly factor D [Zea mays]
gi|22135475|gb|AAM93218.1|AF527617_1 nucleasome/chromatin assembly factor D protein NFD106 [Zea mays]
Length = 154
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KR +AFF+FM++FR+++K HP NKSVA V K GGE+WKSM++ +K PY+ KA + K
Sbjct: 33 KRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVAKEGGERWKSMTDEEKKPYIEKAAELK 92
Query: 97 VEYE 100
E E
Sbjct: 93 AEAE 96
>gi|449433698|ref|XP_004134634.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
gi|449505924|ref|XP_004162605.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
Length = 161
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 59/88 (67%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D NKPK+P +AFF F+++FR+++++ +P K++ VGKA GEKWK+M+ +K Y A
Sbjct: 69 DVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIAT 128
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEE 121
+++ E++K M Y +R G E EE+
Sbjct: 129 EKRAEFDKAMTEYKKRMESGIDQESEED 156
>gi|242080163|ref|XP_002444850.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
gi|241941200|gb|EES14345.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
Length = 221
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 59/91 (64%), Gaps = 6/91 (6%)
Query: 15 LSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
+ V KPA+ + S K KD K KR +AFF+FM++FR+++K HP NKSVA V
Sbjct: 70 VEVAAKPAERNKSSAKGHGGGGNKDA-KRKRSPTAFFLFMDDFRKEFKAAHPDNKSVATV 128
Query: 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 100
K GGEKWKSM++ +K PYV KA + K + E
Sbjct: 129 AKEGGEKWKSMTDEEKKPYVEKAAELKAQAE 159
>gi|224097317|ref|XP_002310906.1| high mobility group family [Populus trichocarpa]
gi|118483462|gb|ABK93630.1| unknown [Populus trichocarpa]
gi|222853809|gb|EEE91356.1| high mobility group family [Populus trichocarpa]
Length = 201
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 55/75 (73%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+DPN PKRP +AFF+FM++FR++YK+ +P +K V V K GG +WKSM++ +K YV KA
Sbjct: 100 RDPNAPKRPPTAFFLFMDDFRKEYKEANPDSKDVKKVAKEGGVRWKSMTDEEKKQYVDKA 159
Query: 93 EKRKVEYEKDMKNYN 107
+ K E +K +++ N
Sbjct: 160 AELKAENDKALESDN 174
>gi|125527178|gb|EAY75292.1| hypothetical protein OsI_03182 [Oryza sativa Indica Group]
Length = 133
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 61/94 (64%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
RK G+ D +PK+P +AFF FME+FR+ YK+++P KS+ VGKA GEKW +M+ +
Sbjct: 36 SRKKGQPLVDRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEE 95
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEE 118
+ Y A +++ EYEK + +++++ G EE
Sbjct: 96 RVKYYDIATEKRAEYEKPVAEFDKKKESGELSEE 129
>gi|297597325|ref|NP_001043799.2| Os01g0666200 [Oryza sativa Japonica Group]
gi|56202161|dbj|BAD73639.1| HMG protein-like [Oryza sativa Japonica Group]
gi|125527174|gb|EAY75288.1| hypothetical protein OsI_03176 [Oryza sativa Indica Group]
gi|215693961|dbj|BAG89148.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673529|dbj|BAF05713.2| Os01g0666200 [Oryza sativa Japonica Group]
Length = 133
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 61/94 (64%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
RK G+ D +PK+P +AFF FME+FR+ YK+++P KS+ VGKA GEKW +M+ +
Sbjct: 36 SRKKGQPLVDRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEE 95
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEE 118
+ Y A +++ EYEK + +++++ G EE
Sbjct: 96 RVKYYDIATEKRAEYEKAVAEFDKKKESGELSEE 129
>gi|18403553|ref|NP_565788.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|75219838|sp|O64702.2|HMG14_ARATH RecName: Full=High mobility group B protein 14; AltName:
Full=Nucleosome/chromatin assembly factor group D 14
gi|20197083|gb|AAC26692.2| putative HMG protein [Arabidopsis thaliana]
gi|20197160|gb|AAM14948.1| putative HMG protein [Arabidopsis thaliana]
gi|21536857|gb|AAM61189.1| putative HMG protein [Arabidopsis thaliana]
gi|26452914|dbj|BAC43535.1| putative HMG protein [Arabidopsis thaliana]
gi|28973511|gb|AAO64080.1| putative HMG protein [Arabidopsis thaliana]
gi|330253881|gb|AEC08975.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 151
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 23/140 (16%)
Query: 3 GGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNK-----------------PKRPASAF 45
GG S RN +L+V K ++ R+S + P + PK+PA+AF
Sbjct: 17 GGSS----RNLELAV--KSSEGARRSTRLRLQPLRKPKTSPKKKPVKLQTKMPKKPATAF 70
Query: 46 FVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105
F F+++FR+QY++++P KS+ +GK GEKWK+M+ +K Y A +++ E+ + M
Sbjct: 71 FFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTE 130
Query: 106 YNRRQAEGTKPEEEEESEKS 125
Y +R G E E +S+ S
Sbjct: 131 YTKRMESGAHDESETDSDYS 150
>gi|326525246|dbj|BAK07893.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 215
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KRP +AFF+FM++FR ++K HP K VAAVGKA GEKW+SM+E +K PY +A++ K
Sbjct: 100 KAKRPPTAFFLFMKDFRVEFKTSHPDEKGVAAVGKAAGEKWRSMTEEEKKPYNDQAKELK 159
Query: 97 VEYE 100
+ +
Sbjct: 160 AQLD 163
>gi|226503761|ref|NP_001151622.1| HMG1/2-like protein [Zea mays]
gi|195648164|gb|ACG43550.1| HMG1/2-like protein [Zea mays]
gi|414881086|tpg|DAA58217.1| TPA: HMG1/2-like protein [Zea mays]
Length = 115
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP PK+P +AFF FME+FR+ YK++ P KS+ +GKA GEKW +M+ +K Y A
Sbjct: 37 DPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGKACGEKWNTMTFEEKVKYYDIAT 96
Query: 94 KRKVEYEKDMKNYNRRQ 110
+++ E+EK M YN+++
Sbjct: 97 EKRAEFEKAMIEYNKKK 113
>gi|357165293|ref|XP_003580334.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 135
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KA K KA KPKR + FF F+ EFR QY + HP+ K VAAV KA GEKW+SMS+
Sbjct: 12 KASGKRKKATGGVAKPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVTKAAGEKWRSMSD 71
Query: 83 ADKAPYVAK---AEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGS 139
+KA Y K ++ K +K+ + + + +G + EE E S+KS S+V D D +E+G+
Sbjct: 72 EEKAKYGGKKQEVQENKAAKKKESTSSKKAKTDGDE-EEGEGSDKSKSDVED-DGEEDGA 129
Query: 140 GEEDDD 145
EED+D
Sbjct: 130 NEEDED 135
>gi|168056739|ref|XP_001780376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668218|gb|EDQ54830.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 54/73 (73%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRPAS F VFME FR+ YK +P++K VAA KAGGEKWK M+E ++APY AE
Sbjct: 107 DPNAPKRPASGFLVFMESFRKTYKDANPESKGVAAAAKAGGEKWKQMTEEERAPYNKDAE 166
Query: 94 KRKVEYEKDMKNY 106
RK+ YE+ M NY
Sbjct: 167 ARKLNYEQAMTNY 179
>gi|225708606|gb|ACO10149.1| High mobility group protein B2 [Osmerus mordax]
Length = 216
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G K GK KDPN PKRP SAFFVF + R + K +HP S+ + K GE W + D
Sbjct: 83 GTKVGKRKKDPNAPKRPPSAFFVFCSDHRARIKGEHP-GISIGDIAKKLGELWSKQTPKD 141
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
K PY AKA K K +YEKD+ Y + G
Sbjct: 142 KVPYEAKAGKLKEKYEKDVAAYRAKSGAG 170
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDPNKP+ S++ F++ RE++KK HP + + + K E+WK+MS +K +
Sbjct: 3 GKDPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFSEFSKKCSERWKTMSAKEKVKFED 62
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV ++++MK Y
Sbjct: 63 LAKGDKVRFDREMKGY 78
>gi|356524949|ref|XP_003531090.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 148
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 60/90 (66%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D KPK+P +AFF F+E+FR+++++ +P KS+ +GKA GEKWK+M+ +K Y A
Sbjct: 56 DAMKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIAT 115
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
K++ E++ M +N++ G E ++ESE
Sbjct: 116 KKREEFDNAMAEFNKKMENGEFDETDDESE 145
>gi|52219178|ref|NP_001004674.1| high-mobility group box 2b [Danio rerio]
gi|51858850|gb|AAH81415.1| High-mobility group box 2 [Danio rerio]
gi|182889482|gb|AAI65150.1| Hmgb2 protein [Danio rerio]
Length = 214
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K+G+ KDPN PKRP SAFFVF E+R K +HP N ++ + K GE W
Sbjct: 80 PPKGVGKTGRKKKDPNAPKRPPSAFFVFCSEYRPTVKSEHP-NLTIGEIAKKLGELWSKQ 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S D+AP+ KA K + +YEK++ Y
Sbjct: 139 SSKDRAPFEQKAGKLREKYEKEVAAY 164
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKK---DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
D NKPK SA+ F++ R+++K+ D P N + K E+WKS++ +DK +
Sbjct: 5 DVNKPKGKTSAYAFFVQTCRDEHKRKSPDVPVN--FSEFSKKCSERWKSLNASDKVKFED 62
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV Y+++MK Y
Sbjct: 63 MAKADKVRYDREMKTY 78
>gi|225715078|gb|ACO13385.1| High mobility group protein B3 [Esox lucius]
Length = 204
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ KA KDPN PKRP S FFVF E R + K HP + + V K GE W +++++
Sbjct: 82 GKRGKKAKKDPNAPKRPPSGFFVFCAEQRPKIKAQHP-SFGIGDVAKKLGEAWNNLTDSS 140
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNR 108
K PY+AKA K K +Y KD+ +Y R
Sbjct: 141 KQPYLAKANKLKEKYRKDVADYKR 164
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
D KPK SA+ F++ RE++KK +P+ + + K +WK+MS +K+ + +A
Sbjct: 5 DARKPKGKMSAYAYFVQTCREEHKKKNPEIPVNFSEFSKKCAGRWKTMSPKEKSKFEDQA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE +M +Y
Sbjct: 65 NQDKARYESEMTSY 78
>gi|213982973|ref|NP_001135648.1| uncharacterized protein LOC100216207 [Xenopus (Silurana)
tropicalis]
gi|156914901|gb|AAI52619.1| Hmgb2 protein [Danio rerio]
gi|197245630|gb|AAI68534.1| Unknown (protein for MGC:181066) [Xenopus (Silurana) tropicalis]
Length = 214
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K+G+ KDPN PKRP SAFFVF E+R K +HP N ++ + K GE W
Sbjct: 80 PPKGVGKTGRKKKDPNAPKRPPSAFFVFCSEYRPTVKSEHP-NLTIGEIAKKLGELWSKQ 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S D+AP+ KA K + +YEK++ Y
Sbjct: 139 SSKDRAPFEQKAGKLREKYEKEVAAY 164
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKK---DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
D NKPK SA+ F++ R+++K+ D P N + K E+WKS++ +DK +
Sbjct: 5 DVNKPKGKTSAYAFFVQTCRDEHKRKGPDVPVN--FSEFSKKCSERWKSLNASDKVKFED 62
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV Y+++MK Y
Sbjct: 63 MAKADKVRYDREMKTY 78
>gi|449534501|ref|XP_004174200.1| PREDICTED: high mobility group B protein 3-like [Cucumis sativus]
Length = 66
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 45/51 (88%)
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
MS+A+KAPY+AKA+KRKVEYEK+MK YN++QA G EE+ESEKSMSEVN
Sbjct: 1 MSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVN 51
>gi|18420676|ref|NP_568431.1| high-mobility group B6 protein [Arabidopsis thaliana]
gi|75245985|sp|Q8LDF9.1|HMGB7_ARATH RecName: Full=High mobility group B protein 7; AltName:
Full=Nucleosome/chromatin assembly factor group D 07;
Short=Nucleosome/chromatin assembly factor group D 7
gi|21554154|gb|AAM63233.1| unknown [Arabidopsis thaliana]
gi|26452394|dbj|BAC43282.1| unknown protein [Arabidopsis thaliana]
gi|332005781|gb|AED93164.1| high-mobility group B6 protein [Arabidopsis thaliana]
Length = 241
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPY 88
K++ NKPKRP +AFF+FM +FR+ +K +H N S+A K GGEKWKS++E +K Y
Sbjct: 107 KSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVY 164
Query: 89 VAKAEKRKVEYEKDM 103
+ KA + K EY K +
Sbjct: 165 LDKAAELKAEYNKSL 179
>gi|388501678|gb|AFK38905.1| unknown [Medicago truncatula]
Length = 152
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 64/103 (62%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R+ + + ++ KA +K K D KPK+P +AFF F+E+FR+++K +P KS+ +G
Sbjct: 37 RSLRQTKSRDITKAVQKKNKQKIDAKKPKKPPTAFFYFLEDFRKEFKDQNPDVKSMRDIG 96
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
KA GEKWK+M+ +K Y A +++ E+++ YN++ G
Sbjct: 97 KACGEKWKTMTFEEKVQYYDIATEKRAEFDRATTEYNKKMESG 139
>gi|297812491|ref|XP_002874129.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
gi|297319966|gb|EFH50388.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
Length = 193
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPY 88
K++ NKPKRP +AFF+FM +FR+ +K +H N S+A K GGEKWKS++E +K Y
Sbjct: 107 KSSSTSNKPKRPLTAFFIFMNDFRKTFKTEH--NGSLAKDAAKIGGEKWKSLTEEEKKVY 164
Query: 89 VAKAEKRKVEYEKDM 103
+ KA + K EY K +
Sbjct: 165 LDKAAELKAEYNKSL 179
>gi|79324303|ref|NP_001031480.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|330253882|gb|AEC08976.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 152
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 24/141 (17%)
Query: 3 GGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNK-----------------PKRPASAF 45
GG S RN +L+V K ++ R+S + P + PK+PA+AF
Sbjct: 17 GGSS----RNLELAV--KSSEGARRSTRLRLQPLRKPKTSPKKKPVKLQTKMPKKPATAF 70
Query: 46 FVFMEEFREQYKKDHPKNKSVA-AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104
F F+++FR+QY++++P KS+ +GK GEKWK+M+ +K Y A +++ E+ + M
Sbjct: 71 FFFLDDFRKQYQEENPDVKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMT 130
Query: 105 NYNRRQAEGTKPEEEEESEKS 125
Y +R G E E +S+ S
Sbjct: 131 EYTKRMESGAHDESETDSDYS 151
>gi|9759080|dbj|BAB09558.1| unnamed protein product [Arabidopsis thaliana]
Length = 226
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPY 88
K++ NKPKRP +AFF+FM +FR+ +K +H N S+A K GGEKWKS++E +K Y
Sbjct: 92 KSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVY 149
Query: 89 VAKAEKRKVEYEKDM 103
+ KA + K EY K +
Sbjct: 150 LDKAAELKAEYNKSL 164
>gi|444730168|gb|ELW70558.1| High mobility group protein B3 [Tupaia chinensis]
Length = 369
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K G+ W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPLSGFFLFSSEFRPKIKSTNP-GISIGDVAKKLGDMWNNLSDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ NY
Sbjct: 148 KLKEKYEKDVANY 160
>gi|351724833|ref|NP_001237839.1| uncharacterized protein LOC100305607 [Glycine max]
gi|255626057|gb|ACU13373.1| unknown [Glycine max]
Length = 150
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 60/90 (66%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D KP++P +AFF F+E+FR+++++ +P +S+ +GKA GEKWK+M+ +K Y A
Sbjct: 58 DAMKPRKPPTAFFYFLEDFRKEFQEQNPDVRSMRDIGKACGEKWKTMTYEEKVQYYDIAT 117
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
K++ E++ M +N++ G E ++ESE
Sbjct: 118 KKREEFDSAMAEFNKKMENGEFDETDDESE 147
>gi|609551|gb|AAA58771.1| HMG-1 [Oncorhynchus mykiss]
Length = 204
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 145 KKASKLKEKYEKDITAY 161
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|1085210|pir||S48708 high-mobility-group-1 protein - trout
Length = 204
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 145 KKASKLKEKYEKDITAY 161
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ R ++KK HP+ + + + K E+WK+MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRIEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|348538096|ref|XP_003456528.1| PREDICTED: high mobility group protein B2-like [Oreochromis
niloticus]
Length = 196
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFFVF + R + K+D+P S+ + K GE W + S DKAPY AKA
Sbjct: 91 DPNAPKRPPSAFFVFCSDHRPKIKEDNP-GISIGDIAKKLGEMWATQSAKDKAPYEAKAA 149
Query: 94 KRKVEYEKDMKNYNRRQAEGTKP 116
+ K +YEKD+ Y + G KP
Sbjct: 150 RLKEKYEKDVAAYRAKGGSGKKP 172
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDPNKP+ S++ F+ RE++KK HP + + A K E+WK+MS +K +
Sbjct: 2 TKDPNKPRGKTSSYAFFVATCREEHKKKHPGTSVNFAEFSKKCSERWKTMSPKEKGKFEE 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV Y+++MK Y
Sbjct: 62 MAKNDKVRYDREMKTY 77
>gi|357144307|ref|XP_003573245.1| PREDICTED: high mobility group B protein 7-like [Brachypodium
distachyon]
Length = 218
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 49/65 (75%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N KRP +AFF+FM++FR ++K HP K V+AVGKA G KWK+M++ +K PY+ +A++
Sbjct: 99 NGKKRPPTAFFIFMKDFRLEFKASHPDEKGVSAVGKAAGVKWKAMTDEEKKPYLDQAKEL 158
Query: 96 KVEYE 100
K +++
Sbjct: 159 KAKFD 163
>gi|255557355|ref|XP_002519708.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223541125|gb|EEF42681.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 198
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 17 VNKKPAKAGRKSGK--AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGG 74
V K AK R S + A D KPK+P +AFF F+E+FR+ ++K +P KS+ +GKA G
Sbjct: 87 VKDKRAKPKRISKRQIAKLDSKKPKKPPTAFFYFLEDFRKDFQKQNPDVKSMREIGKACG 146
Query: 75 EKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
EKWK M+ +K Y A +++ E++K M Y +++ G E E++SE
Sbjct: 147 EKWKMMTYEEKVKYYDIATEKRAEFDKAMAEYIKKKESGEFEEVEDDSE 195
>gi|242053921|ref|XP_002456106.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
gi|241928081|gb|EES01226.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
Length = 109
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PK+P +AFF FME+FR+ YK++ P KS+ +GKA GEKW +M+ +K Y A +++
Sbjct: 25 PKKPPTAFFYFMEDFRKVYKQEKPSVKSMQEIGKACGEKWNTMAFEEKVKYYDIATEKRA 84
Query: 98 EYEKDMKNYNRRQAEGTKPEE 118
E+EK M YN+++ G EE
Sbjct: 85 EFEKAMIEYNKKKKNGEMSEE 105
>gi|432953329|ref|XP_004085352.1| PREDICTED: high mobility group protein B2-like isoform 1 [Oryzias
latipes]
Length = 200
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K G+ KDPN PKRP SAFFVF E+R K+ +P S+ K GE W +
Sbjct: 80 PPKGFGKRGRKRKDPNAPKRPPSAFFVFCSEYRPSVKQQYP-GLSIGDCAKKLGEMWSKL 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+++K PY KA+K + +Y++DM Y
Sbjct: 139 SQSEKQPYEEKAQKLREKYDRDMVAY 164
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KD NKPK SA+ F++ RE+++K +P ++ + A K E+WK++S +DK +
Sbjct: 4 KDVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALSPSDKKCFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y ++M +Y
Sbjct: 64 AKADKVRYNREMCDY 78
>gi|392333067|ref|XP_003752781.1| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
gi|392353165|ref|XP_001067503.2| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
Length = 212
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K GK KDPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K
Sbjct: 96 KGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIEDVVKKLGEMWNNLSDSEKQ 154
Query: 87 PYVAKAEKRKVEYEKDMKNY 106
PY+ KA K K +YEKD+ +Y
Sbjct: 155 PYMTKAAKLKEKYEKDVADY 174
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++K +P+ + A K E+WK+MS +K+ + A+ KV Y +
Sbjct: 28 SAYAFFVQTCREEHKTKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYGR 87
Query: 102 DMKNY 106
+MK+Y
Sbjct: 88 EMKDY 92
>gi|348543650|ref|XP_003459296.1| PREDICTED: high mobility group protein B2-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K G+ KDPN PKRP SAFFVF E+R K+ +P S+ K GE W +
Sbjct: 80 PPKGFGKRGRKRKDPNAPKRPPSAFFVFCSEYRPSVKQQYP-GLSIGDCAKKLGEMWSKL 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+++K PY KA+K + +Y++DM Y
Sbjct: 139 SQSEKQPYEEKAQKLREKYDRDMVAY 164
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KD NKPK SA+ F++ RE+++K +P ++ + A K E+WK++S +DK +
Sbjct: 4 KDINKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALSPSDKKCFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y ++MK+Y
Sbjct: 64 AKADKVRYNREMKDY 78
>gi|297826905|ref|XP_002881335.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297327174|gb|EFH57594.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 152
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 21/139 (15%)
Query: 6 SKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNK------------------PKRPASAFFV 47
S +RN +L+V K ++ R+S + P + PK+P +AFF
Sbjct: 16 SGGSSRNLELAV--KSSEGARRSTRLRLQPLRKPKSSPKKKKPVKLHSKMPKKPPTAFFF 73
Query: 48 FMEEFREQYKKDHPKNKSVA-AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
F+E+FR+QY++++P+ KS+ +GK GEKWK+M+ +K Y A +++ E+ + M Y
Sbjct: 74 FLEDFRKQYQEENPEVKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEY 133
Query: 107 NRRQAEGTKPEEEEESEKS 125
+R G E E +SE S
Sbjct: 134 TKRMESGGYDESETDSEYS 152
>gi|185135647|ref|NP_001118186.1| high mobility group-T protein [Oncorhynchus mykiss]
gi|123382|sp|P07746.2|HMGT_ONCMY RecName: Full=High mobility group-T protein; Short=HMG-T; AltName:
Full=HMG-T1; Short=HMG-1
gi|64328|emb|CAA26500.1| unnamed protein product [Oncorhynchus mykiss]
Length = 204
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA + K +YEKD+ Y
Sbjct: 145 KKASRLKEKYEKDITAY 161
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|410917315|ref|XP_003972132.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 214
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K + S K KDPN PKRP SAFFVF + R + K+D+P S+ + K GE W +
Sbjct: 78 PPKGSKVSRKKKKDPNAPKRPPSAFFVFCSDHRPKIKEDNP-GISIGDIAKKLGELWSTQ 136
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
DKAPY A+A K K +YEKD+ Y
Sbjct: 137 GPKDKAPYEARAAKLKEKYEKDVAAY 162
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAK 91
KD +PK S++ F+ R+++KK HP + + K E+WK+MS +K+ +
Sbjct: 2 KDHGRPKGKMSSYAFFVTTCRDEHKKKHPGTPVNFSEFSKKCSERWKNMSSKEKSKFEEL 61
Query: 92 AEKRKVEYEKDMKNY 106
A+ K+ Y+++M++Y
Sbjct: 62 AKTDKIRYDQEMQSY 76
>gi|221221482|gb|ACM09402.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA + K +YEKD+ Y
Sbjct: 145 KKAARLKEKYEKDITAY 161
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ K+ YE++M++Y
Sbjct: 63 AKLDKMRYEREMRSY 77
>gi|395857208|ref|XP_003800997.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 225
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P SV V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISVGDVAKKLGEMWNNLSDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKAMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|432951224|ref|XP_004084757.1| PREDICTED: high mobility group protein B2-like [Oryzias latipes]
Length = 221
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFFVF + R + K+D+P S+ + K GE W + S DKAPY AKA
Sbjct: 114 DPNAPKRPPSAFFVFCSDHRPKIKEDNP-GISIGDIAKKLGELWATQSAKDKAPYEAKAA 172
Query: 94 KRKVEYEKDMKNYNRRQAEG 113
K K +YEKD+ Y + G
Sbjct: 173 KLKEKYEKDVAAYRAKGGSG 192
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDPNKP+ SA+ F+ RE++KK HP + + A K E+WK+MS +K +
Sbjct: 25 TKDPNKPRGKTSAYAYFVATCREEHKKKHPGTSVNFAEFSKKCSERWKTMSSKEKVKFDE 84
Query: 91 KAEKRKVEYEKDMKNY 106
A+ K Y+++MK Y
Sbjct: 85 LAKTDKARYDREMKTY 100
>gi|410930542|ref|XP_003978657.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 201
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K G+ KDPN PKRP SAFFVF E+R K+ +P S+ K GE W +
Sbjct: 80 PPKGFGKRGRKRKDPNAPKRPPSAFFVFCSEYRPSVKQQYP-GLSIGDCAKKLGEMWSKL 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PY KA+K + +Y++DM Y
Sbjct: 139 TQSEKQPYEEKAQKLREKYDRDMVAY 164
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KD NKPK SA+ F++ RE+++K +P ++ + A K E+WK +S +DK +
Sbjct: 4 KDVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKGLSASDKKCFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y ++M++Y
Sbjct: 64 AKADKVRYNREMRDY 78
>gi|348551110|ref|XP_003461373.1| PREDICTED: high mobility group protein B3-like [Cavia porcellus]
Length = 202
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|354495940|ref|XP_003510086.1| PREDICTED: high mobility group protein B3-like [Cricetulus griseus]
gi|344249016|gb|EGW05120.1| High mobility group protein B3 [Cricetulus griseus]
Length = 200
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|349604600|gb|AEQ00107.1| High mobility group protein B3-like protein, partial [Equus
caballus]
Length = 118
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
GK KDPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY
Sbjct: 1 GKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPY 59
Query: 89 VAKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ +Y
Sbjct: 60 NNKAAKLKEKYEKDVADY 77
>gi|291410190|ref|XP_002721383.1| PREDICTED: high-mobility group box 3 [Oryctolagus cuniculus]
Length = 215
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 104 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAA 162
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 163 KLKEKYEKDVADY 175
Score = 38.5 bits (88), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 29 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 88
Query: 102 DMKNY 106
+MK+Y
Sbjct: 89 EMKDY 93
>gi|47190944|emb|CAF93003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 204
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K G+ KDPN PKRP SAFFVF E+R K+ P S+ K GE W +
Sbjct: 83 PPKGFGKRGRKRKDPNAPKRPPSAFFVFCSEYRPSVKQQFP-GLSIGDCAKKLGEMWSKL 141
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+++K PY KA+K + +Y++DM Y
Sbjct: 142 SQSEKQPYEEKAQKLREKYDRDMVAY 167
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KD NKPK SA+ F++ RE+++K +P ++ + A K E+WK++S DK +
Sbjct: 7 KDVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALSAGDKKCFEDM 66
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y ++M++Y
Sbjct: 67 AKADKVRYNREMRDY 81
>gi|213959194|gb|ACJ54931.1| HMG protein [Oryza sativa Japonica Group]
Length = 131
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A KPKR + FF F+ EFR QY + HP K VAAV KA GEKW++MS+ +KA Y
Sbjct: 17 KKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYG 76
Query: 90 AK---AEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEED 143
K E + K +++ +E E S+KS S+V EDD+ +GSGE++
Sbjct: 77 GKKPDGESKPAAASKKKSTSSKKAKTDGAEQEGEGSDKSKSDV--EDDENDGSGEDE 131
>gi|346986304|ref|NP_001069753.2| high mobility group protein B3 isoform 1 [Bos taurus]
Length = 274
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 163 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 221
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 222 KLKEKYEKDVADY 234
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 88 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 147
Query: 102 DMKNY 106
+MK+Y
Sbjct: 148 EMKDY 152
>gi|413923415|gb|AFW63347.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 95
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 49 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
M EFR++Y+ HP NKSVAAV KA GEKW+SMSE +K PYV +A ++K +YEK N
Sbjct: 1 MSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKKQDYEKTKANI-E 59
Query: 109 RQAEGTKPEEEEESEKSMSEV 129
+++ +K + ++ + S SEV
Sbjct: 60 KESTSSKKAKTDDDDGSKSEV 80
>gi|148694630|gb|EDL26577.1| mCG10155, isoform CRA_d [Mus musculus]
Length = 220
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PYV KA
Sbjct: 109 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAA 167
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 168 KLKEKYEKDVADY 180
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 34 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 93
Query: 102 DMKNY 106
+MK+Y
Sbjct: 94 EMKDY 98
>gi|148235321|ref|NP_001089163.1| high mobility group box 3 [Xenopus laevis]
gi|55824420|gb|AAV66347.1| high mobility group B3b protein [Xenopus laevis]
gi|114108280|gb|AAI23148.1| LOC734200 protein [Xenopus laevis]
Length = 201
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K GK KDPN PKRP S FF+F EFR + K +P S+ + K GE W ++S+ +K
Sbjct: 82 KKGKRNKDPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDIAKKLGEMWNNLSDGEKQ 140
Query: 87 PYVAKAEKRKVEYEKDMKNY 106
PY KA K K +YEKD+ +Y
Sbjct: 141 PYNNKAAKLKEKYEKDVADY 160
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYV 89
A +DP KPK SA+ F++ RE++KK +P+ + A K E+W+SMS +K+ +
Sbjct: 2 AKRDPKKPKGKMSAYAYFVQTCREEHKKKNPEIPVNFAEFSKKCSERWRSMSGKEKSKFE 61
Query: 90 AKAEKRKVEYEKDMKNY 106
A+ KV Y+++MK++
Sbjct: 62 DLAKADKVRYDREMKDF 78
>gi|426258242|ref|XP_004022724.1| PREDICTED: high mobility group protein B3 [Ovis aries]
Length = 248
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 160 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 218
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 219 KLKEKYEKDVADY 231
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 85 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 144
Query: 102 DMKNY 106
+MK+Y
Sbjct: 145 EMKDY 149
>gi|410932269|ref|XP_003979516.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
gi|410933007|ref|XP_003979884.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
Length = 209
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F EFR + K +HP ++ V K GE W + + DK PY KA
Sbjct: 95 DPNAPKRPPSAFFIFCSEFRPKVKGEHP-GLTIGEVAKKLGELWNNTNSEDKQPYEKKAS 153
Query: 94 KRKVEYEKDMKNYNRRQAEGT 114
K K +YEKD+ Y ++ G+
Sbjct: 154 KLKEKYEKDVAAYRQKTKGGS 174
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEA 83
GR SG+ A KP+ S++ F++ RE++KK HP + + + + E+WK+MS
Sbjct: 2 GRDSGREA---GKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSRKCSERWKTMSVK 58
Query: 84 DKAPYVAKAEKRKVEYEKDMKNY 106
+K + A++ KV Y+++M +Y
Sbjct: 59 EKGKFEDLAKQDKVRYDREMMDY 81
>gi|213515010|ref|NP_001133971.1| High mobility group protein B3 [Salmo salar]
gi|209156012|gb|ACI34238.1| High mobility group protein B3 [Salmo salar]
gi|223648118|gb|ACN10817.1| High mobility group protein B3 [Salmo salar]
Length = 206
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K GRK KDPN PKRP+S FF+F + R + K HP + + V K GE+W +++
Sbjct: 82 GKKGRK-----KDPNAPKRPSSGFFIFCADHRPKIKAQHP-SLGIGDVAKKLGEQWNNLT 135
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNY 106
+A K PY+ KA K K +Y+KD+ +Y
Sbjct: 136 DATKQPYLIKANKLKDKYQKDVADY 160
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
P KPK S++ F++ RE++KK P+ + A K +WK+MS +K + A+
Sbjct: 6 PGKPKGKMSSYAYFVQTCREEHKKKTPEIPVNFAEFSKKCSGRWKTMSGKEKGKFDDMAK 65
Query: 94 KRKVEYEKDMKNY 106
+ KV Y+ +M ++
Sbjct: 66 QDKVRYDNEMMHF 78
>gi|81673590|gb|AAI09794.1| High-mobility group box 3 [Bos taurus]
gi|296471156|tpg|DAA13271.1| TPA: high mobility group protein B3 isoform 1 [Bos taurus]
Length = 236
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 125 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 183
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 184 KLKEKYEKDVADY 196
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 50 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 109
Query: 102 DMKNY 106
+MK+Y
Sbjct: 110 EMKDY 114
>gi|226443200|ref|NP_001140081.1| High mobility group-T protein [Salmo salar]
gi|223649418|gb|ACN11467.1| High mobility group-T protein [Salmo salar]
Length = 345
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY
Sbjct: 228 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYE 286
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 287 KKAAKLKEKYEKDITAY 303
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 145 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 204
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 205 AKLDKVRYEREMRSY 219
>gi|395844161|ref|XP_003794831.1| PREDICTED: uncharacterized protein LOC100953571 [Otolemur
garnettii]
Length = 357
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K KDPN PK P S FF+F EFR + K +P S+ V K GE W S+
Sbjct: 247 PAKGGKK-----KDPNAPKTPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNSL 300
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+++K PY+ KA + K + EKD+ +Y
Sbjct: 301 SDSEKQPYITKAAQLKEKDEKDVADY 326
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 9/81 (11%)
Query: 31 AAKDPNKP--KRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS--EADK 85
A +DP KP K PA AFFV + RE++KK +P+ ++A K E+WK+ S E K
Sbjct: 169 AKRDPKKPKGKMPAYAFFV--QTCREEHKKKNPEVPVNLAEFSKKCSERWKATSGKEKSK 226
Query: 86 APYVAKAEKRKVEYEKDMKNY 106
+ +AKA+ KV ++++K+Y
Sbjct: 227 SDEMAKAD--KVCCDREVKDY 245
>gi|148682307|gb|EDL14254.1| mCG114640 [Mus musculus]
Length = 200
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PYV KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|6680231|ref|NP_032279.1| high mobility group protein B3 [Mus musculus]
gi|20138160|sp|O54879.3|HMGB3_MOUSE RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|2738989|gb|AAC16925.1| high mobility group protein homolog HMG4 [Mus musculus]
gi|15030059|gb|AAH11276.1| Hmgb3 protein [Mus musculus]
gi|26327985|dbj|BAC27733.1| unnamed protein product [Mus musculus]
gi|54035419|gb|AAH83352.1| High mobility group box 3 [Mus musculus]
gi|74146994|dbj|BAE27437.1| unnamed protein product [Mus musculus]
gi|74186760|dbj|BAE34835.1| unnamed protein product [Mus musculus]
gi|74192972|dbj|BAE34988.1| unnamed protein product [Mus musculus]
gi|74194280|dbj|BAE24671.1| unnamed protein product [Mus musculus]
gi|148694626|gb|EDL26573.1| mCG10155, isoform CRA_a [Mus musculus]
gi|148694628|gb|EDL26575.1| mCG10155, isoform CRA_a [Mus musculus]
gi|187957408|gb|AAI58038.1| High mobility group box 3 [Mus musculus]
Length = 200
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PYV KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|440910877|gb|ELR60625.1| High mobility group protein B3 [Bos grunniens mutus]
Length = 236
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 125 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 183
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 184 KLKEKYEKDVADY 196
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 50 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 109
Query: 102 DMKNY 106
+MK+Y
Sbjct: 110 EMKDY 114
>gi|350588033|ref|XP_003482539.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
gi|350588037|ref|XP_003482541.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 196
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
>gi|148694627|gb|EDL26574.1| mCG10155, isoform CRA_b [Mus musculus]
Length = 206
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PYV KA
Sbjct: 95 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAA 153
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 154 KLKEKYEKDVADY 166
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 20 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 79
Query: 102 DMKNY 106
+MK+Y
Sbjct: 80 EMKDY 84
>gi|320091041|gb|ADW08807.1| high mobility group box X [Lethenteron camtschaticum]
Length = 225
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 21 PAKAGR--KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
PA+ GR + + KDPN PKRP SAFF+F +FR Q K D+P + + K GE W
Sbjct: 80 PARGGRGGPAQRKKKDPNAPKRPPSAFFIFCADFRPQIKADNP-GMVIGTIAKRLGEMWG 138
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 114
+ +KAPY KA K +Y+KD+ Y R A +
Sbjct: 139 RQTNENKAPYEHKANILKEKYKKDVAAYQRSGASAS 174
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV--GKAGGEKWKSMSEADKAPYVAK 91
DP+KP+ S++ F++ RE++KK HP N SVA + E+WK +S +K +
Sbjct: 5 DPSKPRGRMSSYAYFVQTCREEHKKKHP-NDSVAFTDFSRKCSERWKGLSPKEKLRFEDL 63
Query: 92 AEKRKVEYEKDMKNY 106
A K Y+ +MK+Y
Sbjct: 64 ARADKTRYDTEMKDY 78
>gi|311277128|ref|XP_003135516.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 202
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|170784871|ref|NP_001116308.1| wu:fk52f12 [Danio rerio]
Length = 213
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
++ P K G+K KDPN PKRP S FF+F E R Q K +P + + V K GE
Sbjct: 76 MHYMPGKRGKK-----KDPNAPKRPPSGFFLFCSEHRPQIKAQYP-SLGIGDVAKKLGEM 129
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
W +++A+K P++ KA K K +Y+KD+ +Y + G
Sbjct: 130 WNGLTDANKQPFLMKANKLKDKYQKDVADYKTKSKAG 166
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK P+ S + K +WK+M++ +K+ + A
Sbjct: 5 DPRKPKGKMSAYAYFVQTCREEHKKKSPEIPVSFSEFSKRCSGRWKAMTDKEKSRFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
++ KV Y+++M +Y
Sbjct: 65 KQDKVRYDQEMMHY 78
>gi|351715334|gb|EHB18253.1| High mobility group protein B3, partial [Heterocephalus glaber]
Length = 151
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 40 DPNAPKRPPPGFFLFFSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAA 98
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 99 KLKEKYEKDVADY 111
>gi|403305854|ref|XP_003943467.1| PREDICTED: high mobility group protein B3 [Saimiri boliviensis
boliviensis]
Length = 202
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSEFDEMAKADKVCYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|359062996|ref|XP_003585778.1| PREDICTED: high mobility group protein B3-like, partial [Bos
taurus]
Length = 186
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|2285963|emb|CAA71143.1| high mobility group protein 2a [Homo sapiens]
Length = 200
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 42 ASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 100
SA+ F++ RE++KK +P+ + A K E+WK++S +K+ + A+ KV Y+
Sbjct: 13 TSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTVSGKEKSKFDEMAKADKVRYD 72
Query: 101 KDMKNY 106
++MK+Y
Sbjct: 73 REMKDY 78
>gi|115459940|ref|NP_001053570.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|38345400|emb|CAE03091.2| OSJNBa0017B10.6 [Oryza sativa Japonica Group]
gi|113565141|dbj|BAF15484.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|116309704|emb|CAH66751.1| H0409D10.9 [Oryza sativa Indica Group]
gi|116309707|emb|CAH66753.1| OSIGBa0158F05.2 [Oryza sativa Indica Group]
gi|125549359|gb|EAY95181.1| hypothetical protein OsI_16998 [Oryza sativa Indica Group]
gi|149391231|gb|ABR25633.1| hmg1/2-like protein [Oryza sativa Indica Group]
gi|213959192|gb|ACJ54930.1| HMG protein [Oryza sativa Japonica Group]
gi|215767864|dbj|BAH00093.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629376|gb|EEE61508.1| hypothetical protein OsJ_15798 [Oryza sativa Japonica Group]
gi|323388963|gb|ADX60286.1| HMG transcription factor [Oryza sativa Japonica Group]
Length = 132
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 6/118 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A KPKR + FF F+ EFR QY + HP K VAAV KA GEKW++MS+ +KA Y
Sbjct: 17 KKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYG 76
Query: 90 AK---AEKRKVEYEKDMKNYNRRQAEGTKPEEE-EESEKSMSEVNDEDDDEEGSGEED 143
K E + K ++ + ++A+ E+E E S+KS S+V EDD+ +GSGE++
Sbjct: 77 GKKPDGESKPAAASKKKESTSSKKAKTDGAEQEGEGSDKSKSDV--EDDENDGSGEDE 132
>gi|410256410|gb|JAA16172.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|395754558|ref|XP_002832281.2| PREDICTED: high mobility group protein B3 isoform 2 [Pongo abelii]
Length = 199
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|355705241|gb|EHH31166.1| hypothetical protein EGK_21042 [Macaca mulatta]
Length = 200
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKLKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|223649496|gb|ACN11506.1| High mobility group protein B3 [Salmo salar]
Length = 207
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K GRK KDPN PKRP S FF+F + R + K HP + + V K GE+W +++
Sbjct: 82 GKKGRK-----KDPNAPKRPPSGFFIFCADHRPKIKAQHP-SLGIGDVAKKLGEQWNNLT 135
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNY 106
+A K PY+ KA K K +Y+KD+ +Y
Sbjct: 136 DATKQPYLIKANKLKDKYQKDVADY 160
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
P KPK SA+ F++ RE++KK P+ + A K +WK+MS +K + A+
Sbjct: 6 PGKPKGKMSAYAYFVQTCREEHKKKSPEIPVNFAEFSKKCSGRWKTMSGKEKGKFEDMAK 65
Query: 94 KRKVEYEKDMKNY 106
+ KV Y+ +M ++
Sbjct: 66 QDKVRYDNEMMHF 78
>gi|392354293|ref|XP_003751730.1| PREDICTED: high mobility group protein B3-like isoform 1 [Rattus
norvegicus]
Length = 241
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 130 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYMTKAA 188
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 189 KLKEKYEKDVADY 201
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 55 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 114
Query: 102 DMKNY 106
+MK+Y
Sbjct: 115 EMKDY 119
>gi|410219302|gb|JAA06870.1| high mobility group box 3 [Pan troglodytes]
Length = 199
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|296236643|ref|XP_002763412.1| PREDICTED: high mobility group protein B3-like [Callithrix jacchus]
Length = 203
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|167773205|gb|ABZ92037.1| high-mobility group box 3 [synthetic construct]
Length = 198
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|109132602|ref|XP_001091672.1| PREDICTED: high mobility group protein B3-like isoform 3 [Macaca
mulatta]
gi|109132606|ref|XP_001091441.1| PREDICTED: high mobility group protein B3-like isoform 1 [Macaca
mulatta]
gi|402911729|ref|XP_003918461.1| PREDICTED: high mobility group protein B3 isoform 1 [Papio anubis]
gi|402911731|ref|XP_003918462.1| PREDICTED: high mobility group protein B3 isoform 2 [Papio anubis]
Length = 201
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|71143137|ref|NP_005333.2| high mobility group protein B3 [Homo sapiens]
gi|426397735|ref|XP_004065062.1| PREDICTED: high mobility group protein B3 isoform 1 [Gorilla
gorilla gorilla]
gi|426397739|ref|XP_004065064.1| PREDICTED: high mobility group protein B3 isoform 3 [Gorilla
gorilla gorilla]
gi|85701353|sp|O15347.4|HMGB3_HUMAN RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|47124341|gb|AAH70482.1| HMGB3 protein [Homo sapiens]
gi|117645316|emb|CAL38124.1| hypothetical protein [synthetic construct]
gi|117646384|emb|CAL38659.1| hypothetical protein [synthetic construct]
gi|119619803|gb|EAW99397.1| high-mobility group box 3, isoform CRA_a [Homo sapiens]
gi|410351655|gb|JAA42431.1| high mobility group box 3 [Pan troglodytes]
gi|410351657|gb|JAA42432.1| high mobility group box 3 [Pan troglodytes]
Length = 200
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|164450473|ref|NP_001106728.1| high mobility group protein B3 isoform 2 [Bos taurus]
gi|146324910|sp|Q32L31.2|HMGB3_BOVIN RecName: Full=High mobility group protein B3
gi|296471157|tpg|DAA13272.1| TPA: high mobility group protein B3 isoform 2 [Bos taurus]
gi|399227521|gb|AFP36466.1| HMGB3 transcript variant 1/2 [Bos taurus]
gi|399227522|gb|AFP36467.1| HMGB3 transcript variant 3 [Bos taurus]
Length = 200
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|397466921|ref|XP_003805186.1| PREDICTED: high mobility group protein B3 [Pan paniscus]
gi|410057106|ref|XP_001135676.3| PREDICTED: high mobility group protein B3 isoform 1 [Pan
troglodytes]
gi|426397737|ref|XP_004065063.1| PREDICTED: high mobility group protein B3 isoform 2 [Gorilla
gorilla gorilla]
gi|119619804|gb|EAW99398.1| high-mobility group box 3, isoform CRA_b [Homo sapiens]
Length = 220
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 109 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 167
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 168 KLKEKYEKDVADY 180
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 34 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 93
Query: 102 DMKNY 106
+MK+Y
Sbjct: 94 EMKDY 98
>gi|402882719|ref|XP_003904882.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Papio anubis]
Length = 132
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K+ DPN PKRP S FF+F EF + K +P S+ V K GE WK++
Sbjct: 18 PAKGGKKN-----DPNAPKRPLSGFFLFCSEFHPKMKSTNP-GISIGDVAKKLGEMWKNL 71
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PYV K K ++YEKD+ +Y
Sbjct: 72 NDSEKQPYVTKVAKL-MKYEKDVADY 96
>gi|290560936|ref|NP_001166812.1| high mobility group box 3 [Rattus norvegicus]
gi|392354295|ref|XP_003751731.1| PREDICTED: high mobility group protein B3-like isoform 2 [Rattus
norvegicus]
gi|149027076|gb|EDL82825.1| rCG56793 [Rattus norvegicus]
gi|165971283|gb|AAI58740.1| Hmgb3 protein [Rattus norvegicus]
Length = 200
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYMTKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|45361297|ref|NP_989226.1| high mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|38969943|gb|AAH63332.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89267209|emb|CAJ81415.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89272910|emb|CAJ82928.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
Length = 211
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F EFR + K +HP ++ + K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GSTIGDIAKKLGEMWNNTATDDKLPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 RKAAKLKEKYEKDVAAY 162
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|221220042|gb|ACM08682.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKVETP-GLSIGDVAKKLGEKWNNLTAEDKVPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 145 KKAAKLKEKYEKDITAY 161
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|297812105|ref|XP_002873936.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
gi|297319773|gb|EFH50195.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
Length = 224
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPY 88
K++ NKPKRP +AFF+FM +FR+ +K +H N S A K GGEKW S++E +K Y
Sbjct: 104 KSSSTSNKPKRPLTAFFIFMNDFRKTFKTEH--NGSFAKDAAKIGGEKWMSLTEDEKKVY 161
Query: 89 VAKAEKRKVEYEK 101
+ KA + K EY K
Sbjct: 162 LDKAAELKAEYNK 174
>gi|221221758|gb|ACM09540.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKVETP-GLSIGDVAKKLGEKWNNLTAEDKVPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 145 KKAAKLKEKYEKDITAY 161
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|145480005|ref|XP_001426025.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393097|emb|CAK58627.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKK--------DHPKNKSVAAVGKAGGEKWKSMSEAD 84
+DPN PKRP +AFF+F +++RE+ + D+ + + + G+KW+SMSE +
Sbjct: 28 RDPNAPKRPLTAFFLFSQKYREKVLERNPGIDLSDYQLEVKLIQISQMAGQKWQSMSEQE 87
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQ 110
K PYV + + K +Y D+K YN +Q
Sbjct: 88 KQPYVDQYNQAKSKYNDDVKEYNEKQ 113
>gi|291403518|ref|XP_002718101.1| PREDICTED: high mobility group box 3-like [Oryctolagus cuniculus]
Length = 197
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++DK Y+ KA
Sbjct: 89 DPNAPKRPPSRFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSDKQQYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVTDY 160
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDW 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|205539816|sp|P0C6E5.1|HG3BL_HUMAN RecName: Full=Putative high mobility group protein B3-like protein
Length = 187
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K KDPN PKRP S FF+F EF + K +P + V K GE WK++
Sbjct: 80 PAKGGKK-----KDPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNL 133
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PY+ +A K K +YEKD+ Y
Sbjct: 134 NDSEKQPYITQAAKLKEKYEKDVAVY 159
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +PK + A K E+WK+MS+ +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73
Query: 102 DMKNY 106
++K+Y
Sbjct: 74 EIKDY 78
>gi|431920081|gb|ELK18129.1| High mobility group protein B3 [Pteropus alecto]
Length = 255
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 141 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 199
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 200 KLKEKYEKDVADY 212
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 66 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 125
Query: 102 DMKNY 106
+MK+Y
Sbjct: 126 EMKDY 130
>gi|355762621|gb|EHH62030.1| hypothetical protein EGM_20207 [Macaca fascicularis]
Length = 201
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVPKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|223646906|gb|ACN10211.1| High mobility group-T protein [Salmo salar]
gi|223672769|gb|ACN12566.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 145 KKAAKLKEKYEKDITAY 161
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|221221148|gb|ACM09235.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 145 KKAAKLKEKYEKDITAY 161
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|213513415|ref|NP_001133101.1| high mobility group protein B1 [Salmo salar]
gi|197631937|gb|ACH70692.1| high-mobility group box 1 [Salmo salar]
Length = 203
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 145 KKAAKLKEKYEKDITAY 161
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|387016392|gb|AFJ50315.1| High mobility group protein B1 [Crotalus adamanteus]
Length = 215
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87
S K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + S DK P
Sbjct: 85 SKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTSSEDKQP 143
Query: 88 YVAKAEKRKVEYEKDMKNY 106
+ KA K K +YEKD+ Y
Sbjct: 144 FEKKAGKLKEKYEKDIAAY 162
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
KV YE++MK Y
Sbjct: 65 RADKVRYEREMKTY 78
>gi|148673204|gb|EDL05151.1| mCG5336 [Mus musculus]
Length = 216
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAVYDKQPYG 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|355563197|gb|EHH19759.1| hypothetical protein EGK_02478, partial [Macaca mulatta]
Length = 121
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 7/86 (8%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ + DPN PKRP S FF+F EF + K +P S+ V K GE WK++
Sbjct: 18 PAKGGKNN-----DPNAPKRPLSGFFLFCSEFHPKMKSTNP-GISIGDVAKKLGEMWKNL 71
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PYV K K ++YEKD+ +Y
Sbjct: 72 NDSEKQPYVTKVAKL-MKYEKDVADY 96
>gi|326918606|ref|XP_003205579.1| PREDICTED: high mobility group protein B2-like [Meleagris
gallopavo]
Length = 246
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K DHP S+ K GE W S DK PY KA
Sbjct: 129 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 187
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 188 KLKEKYEKDIAAY 200
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK HP + + A + E+WK+MS +K + A+ K Y++
Sbjct: 52 SSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARYDR 111
Query: 102 DMKNY 106
+MKNY
Sbjct: 112 EMKNY 116
>gi|358410870|ref|XP_003581858.1| PREDICTED: high mobility group protein B3-like [Bos taurus]
Length = 197
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNY 106
K +YEKD+ +Y
Sbjct: 148 KLXEKYEKDVADY 160
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPY--VAKAEKRKVEY 99
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + +AKA+K V Y
Sbjct: 14 SAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIAKADK--VRY 71
Query: 100 EKDMKNY 106
+++MK+Y
Sbjct: 72 DREMKDY 78
>gi|49258306|pdb|1J3C|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 79
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ K GE W S DK PY KA
Sbjct: 4 KDPNAPKRPPSAFFLFCSEYRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKA 62
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 63 AKLKEKYEKDIAAY 76
>gi|225709792|gb|ACO10742.1| High mobility group protein B2 [Caligus rogercresseyi]
Length = 215
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K + +GK KDPN PKRP SAFFVF E R + K D+P + + K G W
Sbjct: 80 PPKGSKAAGKRKKDPNAPKRPPSAFFVFCAEHRGRIKADNP-GMGIGDIAKQLGLLWGKQ 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
+ DK P+ AKA K K +YEKD+ Y + G
Sbjct: 139 TPKDKLPHEAKATKLKEKYEKDVAAYKAKGGAG 171
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDPNKPK S++ F+ RE++KK HP + + + K E+W++MS +K +
Sbjct: 4 KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y+KDMK Y
Sbjct: 64 AKGDKVRYDKDMKGY 78
>gi|729728|sp|P40618.2|HMGB3_CHICK RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|63494|emb|CAA45065.1| HMG2a [Gallus gallus]
Length = 202
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +KA + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|357139210|ref|XP_003571177.1| PREDICTED: high mobility group B protein 13-like [Brachypodium
distachyon]
Length = 537
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+KPK+P SA+FV+ +E R + K+V +GK GE+WKSM++A KAPY A
Sbjct: 325 DPSKPKQPMSAYFVYSQERRAALVAE---KKNVPEIGKITGEEWKSMTDAQKAPYEEVAS 381
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
K+K EY K M+ Y +++ E T+
Sbjct: 382 KQKEEYHKQMEVYKQKKLEETQ 403
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPN+PK+PAS+F +F +E R+Q ++ P N ++ A+ KWK +S +K + K
Sbjct: 450 DPNRPKKPASSFLLFSKEARKQLVEERPGVNNSTINALISV---KWKELSGTEKKTWSEK 506
Query: 92 AEKRKVEYEKDMKNYN 107
A + Y+++M+ Y
Sbjct: 507 AAEGMAAYKREMEEYT 522
>gi|256080078|ref|XP_002576310.1| structure specific recognition protein [Schistosoma mansoni]
gi|350646026|emb|CCD59303.1| structure specific recognition protein,putative [Schistosoma
mansoni]
Length = 632
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K+P+K K K KDPN P RP SA+F++ E RE+ K+ SVA V KA GE W
Sbjct: 526 TKQPSKRQTKKQKKPKDPNAPTRPLSAYFLWFNENREKIAKNLGGQNSVAEVAKAAGEIW 585
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEES 122
++M K+ Y ++ ++ K +Y++D++ Y +P+ +S
Sbjct: 586 RNMDSTAKSSYQSRVDELKKKYQEDLRIYQSNLGSNKEPDLSSDS 630
>gi|347921933|ref|NP_990626.2| high mobility group protein B3 [Gallus gallus]
Length = 217
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 104 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 162
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 163 KLKEKYEKDVADY 175
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +KA + A+ KV Y++
Sbjct: 29 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 88
Query: 102 DMKNY 106
+MK+Y
Sbjct: 89 EMKDY 93
>gi|397524101|ref|XP_003832048.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 130
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 58/96 (60%), Gaps = 9/96 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ DPN PKRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 18 PAKGGK------NDPNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVAKKLGEMWNNL 70
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY-NRRQAEGTK 115
++++K PYV K K K +YEKD+ +Y ++ + +GTK
Sbjct: 71 NDSEKQPYVTKVAKLK-KYEKDVADYKSKGKLDGTK 105
>gi|85000895|ref|XP_955166.1| high-mobility-group (HMG) protein [Theileria annulata strain
Ankara]
gi|65303312|emb|CAI75690.1| high-mobility-group (HMG) protein, putative [Theileria annulata]
Length = 94
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSE 82
AG+KS +A KDPN PKR S++ F +E R + +D+P + VAAVGK G W S+ E
Sbjct: 9 AGKKSKRAKKDPNAPKRALSSYMFFAKEKRAELVRDNPDLARDVAAVGKLVGAAWNSLDE 68
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYNR 108
++KAPY AE + YEK+ YN+
Sbjct: 69 SEKAPYEKLAEADRARYEKEKAAYNK 94
>gi|213514690|ref|NP_001133170.1| high-mobility group box 2 [Salmo salar]
gi|197632301|gb|ACH70874.1| high-mobility group box 2 [Salmo salar]
gi|221219834|gb|ACM08578.1| High mobility group protein B2 [Salmo salar]
gi|221220870|gb|ACM09096.1| High mobility group protein B2 [Salmo salar]
gi|223646276|gb|ACN09896.1| High mobility group protein B2 [Salmo salar]
gi|223646962|gb|ACN10239.1| High mobility group protein B2 [Salmo salar]
gi|223672123|gb|ACN12243.1| High mobility group protein B2 [Salmo salar]
gi|223672825|gb|ACN12594.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K + +GK KDPN PKRP SAFFVF E R + K D+P + + K G W
Sbjct: 80 PPKGSKAAGKRKKDPNAPKRPPSAFFVFCAEHRGRIKADNP-GMGIGDIAKQLGLLWGKQ 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 114
+ DK P+ AKA K K +YEKD+ Y + G
Sbjct: 139 TPKDKLPHEAKAAKLKEKYEKDVAAYKAKGGAGA 172
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDPNKPK S++ F+ RE++KK HP + + + K E+W++MS +K +
Sbjct: 4 KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y+KDMK Y
Sbjct: 64 AKGDKVRYDKDMKGY 78
>gi|119596659|gb|EAW76253.1| hCG2042470 [Homo sapiens]
Length = 118
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 58/96 (60%), Gaps = 9/96 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ DPN PKRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 6 PAKGGKN------DPNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVAKKLGEMWNNL 58
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY-NRRQAEGTK 115
++++K PYV K K K +YEKD+ +Y ++ + +GTK
Sbjct: 59 NDSEKQPYVTKVAKLK-KYEKDVADYKSKGKLDGTK 93
>gi|391638|dbj|BAA03261.1| ORF1 [Gallus gallus]
Length = 298
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 110 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 167
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 168 AGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 202
>gi|56756695|gb|AAW26520.1| SJCHGC07008 protein [Schistosoma japonicum]
Length = 213
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K +K K K KDPN P RP SA+F++ E RE+ K SVA V KAGGE W++
Sbjct: 111 KSSKRQTKKQKKPKDPNAPTRPLSAYFLWFNENREKIAKSLSGQNSVAEVAKAGGELWRN 170
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNY 106
M K+ Y ++ ++ K +Y++D++ Y
Sbjct: 171 MDSETKSTYQSRVDELKKKYQEDLRVY 197
>gi|332260744|ref|XP_003279440.1| PREDICTED: uncharacterized protein LOC100604184 [Nomascus
leucogenys]
Length = 414
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG---KAGGEKWKSMSEADK 85
GK KDPN P+RP S FF+F EFR + K +P + G K GE WK++++++K
Sbjct: 84 GKKKKDPNAPQRPLSGFFLFCSEFRPKIKSTNPGKTGIFGFGDVAKKLGEMWKNLNDSEK 143
Query: 86 APYVAKAEKRKVEYEKDM 103
P++ +A K K +YEKD+
Sbjct: 144 QPHITQAAKLKEKYEKDV 161
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +PK + A K E+WK++SE K+ + A
Sbjct: 5 DPTKPKGKMSAYAFFVQTCREEHKKKNPKVPVNFAEFSKKCSERWKTISEKKKSEFNELA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV Y++ +K+Y
Sbjct: 65 KADKVHYDQKIKDY 78
>gi|118343940|ref|NP_001071792.1| transcription factor protein [Ciona intestinalis]
gi|70570753|dbj|BAE06615.1| transcription factor protein [Ciona intestinalis]
Length = 310
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K +DPN+PKRP SA+F+F+ +FR+ Y K+ + K GE W S+S+A+K PY
Sbjct: 122 KKPRDPNRPKRPPSAYFLFLADFRKNYPG---KSDPAKEITKKAGEAWNSLSDAEKTPYY 178
Query: 90 AKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDDE 146
A+ + ++E+D++ Y + GT S + + D E GE DE
Sbjct: 179 RSAQLVRAKWEQDLEAYKQSVKCGTL--------SRASSIQSDHDPVEMVGEVGLDE 227
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 18 NKKPAKAGRKSG--KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
N P++ GRK K K KRP +A+ F+ ++RE K+ + +A E
Sbjct: 31 NYSPSRRGRKPTDKKKRKRHTWVKRPTTAYLYFVSKYRETLKEAGEVVPKAKIITQACAE 90
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKD 102
KW++M+E +K P++ + + + ++KD
Sbjct: 91 KWRNMNEEEKEPFLELSRRDRERWQKD 117
>gi|361127235|gb|EHK99210.1| putative Non-histone chromosomal protein 6 [Glarea lozoyensis
74030]
Length = 100
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K K +++ K KDPN PKR SA+ F E RE ++++P S VGK GE+WK+
Sbjct: 5 KAPKRAKRTEKKKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKVLGERWKA 63
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYN 107
+S+ + PY AKA+ K+ YE++ NYN
Sbjct: 64 LSDTQRKPYAAKADADKIRYEEEKANYN 91
>gi|148234528|ref|NP_001080836.1| high mobility group box 1 [Xenopus laevis]
gi|32450384|gb|AAH54148.1| Hmgb1-prov protein [Xenopus laevis]
Length = 211
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F EFR + K +HP ++ + K GE W + + DK P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GSTIGDIAKKLGEMWNNTATDDKLPFE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 RKAAKLKEKYEKDVAAY 162
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|449270893|gb|EMC81539.1| High mobility group protein B2 [Columba livia]
Length = 207
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K DHP S+ K GE W S DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A + E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>gi|401402785|ref|XP_003881334.1| high mobility group protein, related [Neospora caninum Liverpool]
gi|325115746|emb|CBZ51301.1| high mobility group protein, related [Neospora caninum Liverpool]
Length = 94
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKS 79
P K K KA KDPN PKRP SAF F ++ RE+ + +P+ KS +A VGK GE W
Sbjct: 3 PKKTIVKKTKAKKDPNAPKRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGK 62
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+S+A K PY +KA K YE++M Y +
Sbjct: 63 LSDAQKKPYESKAVADKARYEREMIAYKK 91
>gi|609553|gb|AAA74556.1| HMG-T2 [Oncorhynchus mykiss]
Length = 215
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K + +GK KDPN PKRP SAFFVF E R + K D+P + + K G W
Sbjct: 80 PPKGSKAAGKRKKDPNAPKRPPSAFFVFCAEHRGRIKADNP-GMGIGDIAKQLGLLWGKQ 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 114
+ DK P+ AKA K K +YEKD+ Y + G
Sbjct: 139 TPKDKQPHEAKAAKLKEKYEKDVAAYKAKGGAGA 172
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDPNKPK S++ F+ RE++KK HP + + + K E+W++MS +K +
Sbjct: 4 KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y+KDMK Y
Sbjct: 64 AKGDKVRYDKDMKGY 78
>gi|221221606|gb|ACM09464.1| High mobility group protein B2 [Salmo salar]
gi|223646184|gb|ACN09850.1| High mobility group protein B2 [Salmo salar]
gi|223646756|gb|ACN10136.1| High mobility group protein B2 [Salmo salar]
gi|223672031|gb|ACN12197.1| High mobility group protein B2 [Salmo salar]
gi|223672611|gb|ACN12487.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K + +GK KDPN PKRP SAFFVF E R + K D+P + + K G W
Sbjct: 80 PPKGSKAAGKRKKDPNAPKRPPSAFFVFCAEHRGRIKADNP-GMGIGDIAKQLGLLWGKQ 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 114
+ DK P+ AKA K K +YEKD+ Y + G
Sbjct: 139 TPKDKQPHEAKAAKLKEKYEKDVAAYKAKGGAGA 172
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDPNKPK S++ F+ RE++KK HP + + + K E+W++MS +K +
Sbjct: 4 KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y+KDMK Y
Sbjct: 64 AKGDKVRYDKDMKGY 78
>gi|211929|gb|AAA48819.1| high-mobility group-2 protein [Gallus gallus]
Length = 207
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K DHP S+ K GE W S DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ ++KK HP + + A + E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCPREHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>gi|118344422|ref|NP_001072036.1| transcription factor protein [Ciona intestinalis]
gi|70570508|dbj|BAE06614.1| transcription factor protein [Ciona intestinalis]
Length = 447
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 11/114 (9%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+DPN+PKRP SA+F+F+ +FR+ Y K+ + K GE W S+S+A+K PY A
Sbjct: 262 RDPNRPKRPPSAYFLFLADFRKNYPG---KSDPAKEITKKAGEAWNSLSDAEKTPYYRSA 318
Query: 93 EKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDDE 146
+ + ++E+D++ Y + GT S + + D E GE DE
Sbjct: 319 QLVRAKWEQDLEAYKQSVKCGTL--------SRASSIQSDHDPVEMVGEVGLDE 364
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 18 NKKPAKAGRKSG--KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
N P++ GRK K K KRP +A+ F+ ++RE K+ + +A E
Sbjct: 168 NYSPSRRGRKPTDKKKRKRHTWVKRPTTAYLYFVSKYRETLKEAGEVVPKAKIITQACAE 227
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKD 102
KW++M+E +K P++ + + + ++KD
Sbjct: 228 KWRNMNEEEKEPFLELSRRDRERWQKD 254
>gi|296200444|ref|XP_002747606.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 210
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDP+ PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPSAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNYNRRQAEG 113
K K +YEKD+ Y QA+G
Sbjct: 149 SKLKEKYEKDIAAY---QAKG 166
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|171848939|pdb|2YQI|A Chain A, Solution Structure Of The Second Hmg-Box Domain From High
Mobility Group Protein B3
Length = 81
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
G + N PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY
Sbjct: 1 GSSGSSGNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPY 59
Query: 89 VAKAEKRKVEYEKDMKNY 106
+ KA K K +YEKD+ +Y
Sbjct: 60 ITKAAKLKEKYEKDVADY 77
>gi|281338637|gb|EFB14221.1| hypothetical protein PANDA_014002 [Ailuropoda melanoleuca]
Length = 168
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|410989557|ref|XP_004001438.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Felis catus]
Length = 201
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|148238271|ref|NP_001081794.1| high mobility group protein-1 [Xenopus laevis]
gi|709959|gb|AAC59859.1| high mobility group protein-1 [Xenopus laevis]
Length = 210
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F +FR + K +HP ++ + K GE W + + DK PY
Sbjct: 86 KRFKDPNAPKRPPSAFFLFCSDFRPKIKGEHP-GSTIGDIAKKLGEMWNNTATDDKLPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
+A K K +YEKD+ Y
Sbjct: 145 RRAAKLKEKYEKDVAAY 161
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS-EADKAPYVAK 91
DP KP+ S++ F++ RE++KK HP + + A K E+WK+MS E K +AK
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSKEKTKFEDMAK 64
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++MK+Y
Sbjct: 65 AD--KVRYEREMKSY 77
>gi|49115548|gb|AAH73449.1| HMG-1 protein [Xenopus laevis]
Length = 210
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F +FR + K +HP ++ + K GE W + + DK PY
Sbjct: 86 KRFKDPNAPKRPPSAFFLFCSDFRPKIKGEHP-GSTIGDIAKKLGEMWNNTATDDKLPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
+A K K +YEKD+ Y
Sbjct: 145 RRAAKLKEKYEKDVAAY 161
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS-EADKAPYVAK 91
DP KP+ S++ F++ RE++KK HP + + A K E+WK+MS E K +AK
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSKEKTKFEDMAK 64
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++MK+Y
Sbjct: 65 AD--KVRYEREMKSY 77
>gi|57112857|ref|XP_538194.1| PREDICTED: high mobility group protein B3 [Canis lupus familiaris]
gi|338729649|ref|XP_001505130.3| PREDICTED: high mobility group protein B3-like isoform 1 [Equus
caballus]
Length = 201
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|417396975|gb|JAA45521.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 200
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|301778413|ref|XP_002924621.1| PREDICTED: high mobility group protein B3-like [Ailuropoda
melanoleuca]
Length = 201
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|395545985|ref|XP_003774876.1| PREDICTED: high mobility group protein B3-like [Sarcophilus
harrisii]
Length = 201
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|149410917|ref|XP_001509199.1| PREDICTED: high mobility group protein B3-like isoform 1
[Ornithorhynchus anatinus]
gi|345306624|ref|XP_003428488.1| PREDICTED: high mobility group protein B3-like isoform 2
[Ornithorhynchus anatinus]
Length = 201
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|320168039|gb|EFW44938.1| hypothetical protein CAOG_02944 [Capsaspora owczarzaki ATCC 30864]
Length = 193
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P G KSGK +KDPN PKRP SA+ F R + +K +P + ++ A+ GE W+ +
Sbjct: 85 PVSTGGKSGKKSKDPNAPKRPPSAYICFANAVRPELRKTYPSD-TMPAISTKIGELWRQL 143
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++ +K PY +AE K++++ +M Y
Sbjct: 144 TDDNKEPYNKQAEALKLKFQTEMAAY 169
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPNKPK+P +AF F RE+ K +P K + + G+ W + EADK Y A
Sbjct: 10 KDPNKPKKPTTAFMYFSNAMRERVKTQNPGLK-MTDIASVLGKLWGQLPEADKDKYQTMA 68
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
K Y K M Y + G K
Sbjct: 69 NSDKERYAKAMDGYVAPVSTGGK 91
>gi|349802605|gb|AEQ16775.1| putative high mobility group box 3 [Pipa carvalhoi]
Length = 149
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++E +K PY KA
Sbjct: 64 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNEGEKQPYNNKAA 122
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 123 KLKEKYEKDVADY 135
>gi|392337480|ref|XP_003753270.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343959|ref|XP_003748829.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWTNTAADDKQPYGKMA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
+ K YE++MK Y + E K
Sbjct: 65 KADKARYEREMKTYIPHKGETKK 87
>gi|414869181|tpg|DAA47738.1| TPA: hypothetical protein ZEAMMB73_864709 [Zea mays]
Length = 198
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 32/43 (74%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KPKRP SAFFVFM EFR++Y+ HP NKS+ V K GEKW +
Sbjct: 153 KPKRPPSAFFVFMSEFRQEYQVQHPGNKSIVVVSKTAGEKWHA 195
>gi|56788496|gb|AAW29969.1| unknown [Sus scrofa]
gi|56792880|gb|AAW30632.1| unknown [Sus scrofa]
Length = 193
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKXA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|56384901|gb|AAV85889.1| high mobility group 1 protein [Pelodiscus sinensis]
Length = 202
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|49258307|pdb|1J3D|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 78
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 3 KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKA 61
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 62 AKLKEKYEKDIAAY 75
>gi|355694844|gb|AER99804.1| high-mobility group box 3 [Mustela putorius furo]
Length = 197
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 91 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 150 KLKEKYEKDVADY 162
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 16 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 75
Query: 102 DMKNY 106
+MK+Y
Sbjct: 76 EMKDY 80
>gi|145540136|ref|XP_001455758.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423566|emb|CAK88361.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 8/103 (7%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQY--------KKDHPKNKSVAAVGKAGGEKWKSMS 81
K +DPN PKRP + FF+F +++R++ ++D+ + + + G+KW SMS
Sbjct: 25 KKERDPNAPKRPLTPFFLFSQKYRDKVLERNPGIDQRDYSLEVKLTQISQMAGQKWNSMS 84
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
E +K PYV + + K +Y+ D+K YN + T ++ ++SEK
Sbjct: 85 EEEKQPYVDQYNEAKNKYDGDLKVYNDKHGLNTNEKKRKKSEK 127
>gi|547652|sp|P36194.2|HMGB1_CHICK RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|391636|dbj|BAA03260.1| HMG-1 [Gallus gallus]
Length = 201
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 146
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 147 KLKEKYEKDVADY 159
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102
SA+ F++ RE++KK+ + A K E+WK+MS +KA + A+ KV Y+++
Sbjct: 14 SAYAFFVQTCREEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDRE 73
Query: 103 MKNY 106
MK+Y
Sbjct: 74 MKDY 77
>gi|126333240|ref|XP_001376238.1| PREDICTED: FACT complex subunit SSRP1 [Monodelphis domestica]
Length = 712
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
GK KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K +
Sbjct: 538 GKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEW 596
Query: 89 VAKAEKRKVEYEKDMKNYN 107
KAE+ K EYEK MK Y+
Sbjct: 597 DRKAEEAKREYEKAMKEYS 615
>gi|449269345|gb|EMC80131.1| High mobility group protein B3 [Columba livia]
Length = 202
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +KA + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEIPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|344252855|gb|EGW08959.1| TRAF family member-associated NF-kappa-B activator [Cricetulus
griseus]
Length = 427
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R ++K +HP S+ V K GE W + + DK PY
Sbjct: 300 KKFKDPNAPKRPPSAFFLFCSEYRPKFKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 358
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K ++EKD+ Y
Sbjct: 359 KKAAKLKEKHEKDIAAY 375
>gi|224098124|ref|XP_002198052.1| PREDICTED: high mobility group protein B3 isoform 1 [Taeniopygia
guttata]
gi|326924638|ref|XP_003208532.1| PREDICTED: high mobility group protein B3-like [Meleagris
gallopavo]
gi|449498655|ref|XP_004177286.1| PREDICTED: high mobility group protein B3 isoform 2 [Taeniopygia
guttata]
Length = 202
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +KA + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|291415754|ref|XP_002724114.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 115 DPNAPKRPPSAFFLFCSEHRPEIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 173
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 174 KLKEKYEKDIAAY 186
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 22 AKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKS 79
A GR+S K DPNKP+ S++ F++ RE++KK HP + + A K E+WK+
Sbjct: 16 APGGRRSVVMGKGDPNKPRDKMSSYAFFVQMCREEHKKKHPDSSINFAEFSKKCSERWKT 75
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS +K+ + A+ K Y+++MKNY
Sbjct: 76 MSAKEKSKFENMAKSDKARYDREMKNY 102
>gi|334323271|ref|XP_003340370.1| PREDICTED: high mobility group protein B1-like [Monodelphis
domestica]
Length = 216
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K +YEKD+ Y
Sbjct: 146 KKAAILKEKYEKDIAAY 162
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFQDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KADKVHYEREMKTY 78
>gi|291399740|ref|XP_002716281.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 243
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYERKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD Y
Sbjct: 149 AKLKGKYEKDTAAY 162
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
D KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DRKKPRGKMSSYAFFVQTCREEHKKRHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|253756810|gb|ACT35162.1| HmgB3y, partial [Monodelphis domestica]
Length = 193
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 86 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYNNKAA 144
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 145 KLKEKYEKDVADY 157
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A
Sbjct: 2 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKNMSGKEKSKFDEMA 61
Query: 93 EKRKVEYEKDMKNY 106
+ K+ Y+++MK+Y
Sbjct: 62 KADKLRYDREMKDY 75
>gi|351706443|gb|EHB09362.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 226
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K P ++ V K GE W ++S+++K PY+ K
Sbjct: 108 DPNAPKRPPSGFFLFCSEFRPKIKSTKP-GITIGDVAKKLGEMWNNLSDSEKQPYITKVA 166
Query: 94 KRKVEYEKDMKNY 106
K K ++EKD+ +Y
Sbjct: 167 KLKEKHEKDVADY 179
>gi|283462216|gb|ADB22402.1| dorsal switch-like hmg protein [Saccoglossus kowalevskii]
Length = 241
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR S FF+F R + KK HP N V V KA GE+WK++S ADKA Y +A
Sbjct: 121 DPDAPKRNLSPFFLFCNVKRAEVKKVHP-NWGVGDVAKALGEQWKNVSAADKAKYEKEAA 179
Query: 94 KRKVEYEKDMKNY 106
K K+ YEKDM+ Y
Sbjct: 180 KEKIRYEKDMEAY 192
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKA 92
+P+KPK SA+ F++ R+++KK HP V A K E+WK M++ +K + A
Sbjct: 32 NPDKPKGRMSAYAFFVQSCRQEHKKQHPAESVVFAEFSKKCAERWKKMTDKEKKVFHDMA 91
Query: 93 EKRKVEYEKDMKNYN 107
+K K Y +M+ Y
Sbjct: 92 DKDKERYNTEMEKYT 106
>gi|395544035|ref|XP_003773918.1| PREDICTED: FACT complex subunit SSRP1 [Sarcophilus harrisii]
Length = 712
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
GK KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K +
Sbjct: 538 GKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKDKKEEW 596
Query: 89 VAKAEKRKVEYEKDMKNYN 107
KAE+ K EYEK MK Y+
Sbjct: 597 DRKAEEAKREYEKAMKEYS 615
>gi|169409528|gb|ACA57879.1| High mobility group protein B3 (predicted) [Callicebus moloch]
Length = 193
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K + S+ V K GE W +++++ K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTN-LGISIGDVAKKLGEMWNNLNDSKKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY-NRRQAEGTK 115
K K +YEKD+ +Y ++ + +GTK
Sbjct: 148 KLKEKYEKDVADYKSKGKFDGTK 170
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 42 ASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 100
SA+ F++ RE++KK +P+ + A K E+WK MS +K+ + A+ KV Y+
Sbjct: 13 TSAYAFFVQTCREEHKKKNPEAPVNFAEFSKKCPERWKIMSGKEKSKFDEMAKADKVRYD 72
Query: 101 KDMKNY 106
++MK+Y
Sbjct: 73 QEMKDY 78
>gi|403295522|ref|XP_003938690.1| PREDICTED: high mobility group protein B3-like [Saimiri boliviensis
boliviensis]
Length = 202
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN KRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNASKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYV 89
A DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ +
Sbjct: 2 AKCDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD 61
Query: 90 AKAEKRKVEYEKDMKNY 106
A+ KV Y+++MK+Y
Sbjct: 62 EMAKADKVRYDREMKDY 78
>gi|71027705|ref|XP_763496.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350449|gb|EAN31213.1| high mobility group protein, putative [Theileria parva]
Length = 94
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSE 82
AG+KS +A KDPN PKR S++ F +E R + +++P + VAAVGK G W S+ E
Sbjct: 9 AGKKSKRAKKDPNAPKRALSSYMFFAKEKRAELVRENPDLARDVAAVGKLVGAAWNSLDE 68
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYNR 108
++KAPY AE + YEK+ YN+
Sbjct: 69 SEKAPYEKLAEADRARYEKEKAAYNK 94
>gi|237845111|ref|XP_002371853.1| high mobility group protein [Toxoplasma gondii ME49]
gi|211969517|gb|EEB04713.1| high mobility group protein [Toxoplasma gondii ME49]
gi|221480801|gb|EEE19228.1| high mobility group protein, putative [Toxoplasma gondii GT1]
gi|221501467|gb|EEE27242.1| high mobility group protein, putative [Toxoplasma gondii VEG]
Length = 302
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKS 79
P K K KA KDPN PKRP SAF F ++ RE+ + +P+ KS +A VGK GE W
Sbjct: 211 PKKTIVKKTKAKKDPNAPKRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGK 270
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNY 106
+S+A K PY +KA K YE++M Y
Sbjct: 271 LSDAQKKPYESKAVADKARYEREMIAY 297
>gi|211520|gb|AAA48685.1| HMG box (bp. 1499..1757), partial [Gallus gallus]
Length = 669
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 4 GKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
G+ KS K+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP
Sbjct: 475 GEKKSSQEGPKIVKDRKPRKKQVES-KKGKDPNVPKRPMSAYMLWLNANREKIKSDHP-G 532
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
S+ + K GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 533 ISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 576
>gi|344299188|ref|XP_003421269.1| PREDICTED: high mobility group protein B3-like [Loxodonta africana]
Length = 200
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|254826706|ref|NP_001157151.1| high mobility group protein B3 [Monodelphis domestica]
gi|253756818|gb|ACT35166.1| HmgB3x [Monodelphis domestica]
Length = 201
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|229367846|gb|ACQ58903.1| High mobility group protein B2 [Anoplopoma fimbria]
Length = 213
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFFVF + R + K+++P S+ + K GE W + + DK PY A+A
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRPRIKEENP-GISIGDIAKKLGEFWSTQTSKDKVPYEARAG 150
Query: 94 KRKVEYEKDMKNYNRRQAEG 113
K K +YEKD+ Y + G
Sbjct: 151 KLKEKYEKDVAAYKAKSGLG 170
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDPNKP+ S++ F+ RE++KK HP + A K E+WK+MS +K +
Sbjct: 2 TKDPNKPRGKTSSYAFFVATCREEHKKKHPGVSVGFAEFSKKCSERWKTMSAKEKVKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV YE++MK Y
Sbjct: 62 LAKNDKVRYEREMKTY 77
>gi|449500530|ref|XP_002187513.2| PREDICTED: high mobility group protein B2 [Taeniopygia guttata]
Length = 145
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 40 DPNAPKRPPSAFFLFCSEHRPKIKNEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 98
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 99 KLKEKYEKDIAAY 111
>gi|162460188|ref|NP_001105108.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|4995921|emb|CAB44297.1| HMG1 protein [Zea mays]
Length = 123
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KR + FF F+ EFR QY + HP+ K V V KA GEKW+SMS+ +KA Y + ++
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGSSKKQDGKA 79
Query: 99 YEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDDE 146
+K+ + + +A+ + +E E S KS SEV D++ D G ED+DE
Sbjct: 80 SKKENTSSKKAKADVREGDEAEGSNKSKSEVEDDEQD----GNEDEDE 123
>gi|327268628|ref|XP_003219098.1| PREDICTED: high mobility group protein B2-like [Anolis
carolinensis]
Length = 209
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E R + K DHP S+ K GE W + DK P+ KA
Sbjct: 88 KDPNAPKRPPSAFFLFCSEHRPKIKSDHP-GLSIGDTAKKLGEMWSLQTAKDKLPFEQKA 146
Query: 93 EKRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 147 LKLKEKYDKDIAAY 160
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+W++MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWRTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>gi|195627962|gb|ACG35811.1| HMG1/2-like protein [Zea mays]
Length = 123
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KR + FF F+ EFR QY + HP+ K V V KA GEKW+SMS+ +KA Y + ++
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGSSKKQDGKA 79
Query: 99 YEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDDE 146
+K+ + + +A+ + +E E S KS SEV D++ D G ED+DE
Sbjct: 80 SKKENTSSKKAKADIREGDEAEGSNKSKSEVEDDEQD----GNEDEDE 123
>gi|326499588|dbj|BAJ86105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+KPK+P SA+F++ +E R + K+V +GK GE+WK M+EA KAPY A
Sbjct: 330 DPSKPKQPMSAYFLYSQERRGALVAE---KKTVPEIGKITGEEWKGMTEAQKAPYEEAAR 386
Query: 94 KRKVEYEKDMKNYNRR 109
K+K Y+K M+ YN++
Sbjct: 387 KQKEAYQKQMEVYNQK 402
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPN+PK+PAS+F +F +E R+Q ++ P N +++A+ KWK +S A+K + K
Sbjct: 455 DPNRPKKPASSFLLFSKEARKQLAEERPGVNNSTLSALISV---KWKDLSSAEKKVWSQK 511
Query: 92 AEKRKVEYEKDMKNYNR 108
A + Y+ +M Y +
Sbjct: 512 AAQGMAAYKMEMDEYTK 528
>gi|149245546|ref|XP_001527250.1| hypothetical protein LELG_02079 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449644|gb|EDK43900.1| hypothetical protein LELG_02079 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 187
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K +DP+ PKRP++A+ VF E+ +E+ K D P++K ++ + E WKS+SE ++ PY
Sbjct: 63 KKPRDPDLPKRPSNAYLVFCEQEKERLKLDDPESKDLS---RTMTEAWKSLSEEERRPYY 119
Query: 90 AKAEKRKVEYEKDMKNYNRRQAEGTK 115
E +V Y+++M YNR++ + TK
Sbjct: 120 KLYEDDRVRYQREMDEYNRKKEQKTK 145
>gi|296317265|ref|NP_001171733.1| dorsal switch-like hmg protein [Saccoglossus kowalevskii]
Length = 215
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR S FF+F R + KK HP N V V KA GE+WK++S ADKA Y +A
Sbjct: 95 DPDAPKRNLSPFFLFCNVKRAEVKKVHP-NWGVGDVAKALGEQWKNVSAADKAKYEKEAA 153
Query: 94 KRKVEYEKDMKNY 106
K K+ YEKDM+ Y
Sbjct: 154 KEKIRYEKDMEAY 166
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKA 92
+P+KPK SA+ F++ R+++KK HP V A K E+WK M++ +K + A
Sbjct: 6 NPDKPKGRMSAYAFFVQSCRQEHKKQHPAESVVFAEFSKKCAERWKKMTDKEKKVFHDMA 65
Query: 93 EKRKVEYEKDMKNYN 107
+K K Y +M+ Y
Sbjct: 66 DKDKERYNTEMEKYT 80
>gi|222087985|gb|ACM41855.1| high mobility group box 2-like protein [Epinephelus coioides]
Length = 212
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFFVF E R + K++ P S+ K GE W + S +KAPY AKA
Sbjct: 87 DPNAPKRPPSAFFVFCSEHRPRIKEECP-GISIGDTAKKLGELWSTQSSKEKAPYEAKAA 145
Query: 94 KRKVEYEKDMKNYNRRQAEG 113
K K +YEK++ Y + G
Sbjct: 146 KLKEKYEKEVAAYRAKGVSG 165
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
NKP+ S++ F+ + RE++K+ HP + A K E+WK+MS +KA + A+
Sbjct: 1 NKPRGKTSSYAFFIADCREEHKRKHPGTSVGFAEFSKKCSERWKTMSAKEKAKFEELAKT 60
Query: 95 RKVEYEKDMKNY 106
K+ Y+++MK Y
Sbjct: 61 DKIRYDREMKTY 72
>gi|224043266|ref|XP_002194652.1| PREDICTED: high mobility group protein B1 [Taeniopygia guttata]
Length = 215
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K+ YEK+MKNY
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|395850201|ref|XP_003797684.1| PREDICTED: high mobility group protein B1 [Otolemur garnettii]
Length = 289
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|414585862|tpg|DAA36433.1| TPA: HMG1 protein [Zea mays]
Length = 123
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KR + FF F+ EFR QY + HP+ K V V KA GEKW+SMS+ +KA Y ++
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGGSKKQDGKA 79
Query: 99 YEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDDE 146
+K+ + + +A+ + +E E S KS SEV D++ D G ED+DE
Sbjct: 80 SKKENTSSKKAKADVREGDEAEGSNKSKSEVEDDEQD----GNEDEDE 123
>gi|66840992|emb|CAI64395.1| putative high mobility group protein [Triticum aestivum]
Length = 112
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
KPKR + FF F+ EFR QY + HP+ K VAAV KA GEKW+SMS+ +KA Y
Sbjct: 22 KPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVTKAAGEKWRSMSDEEKAKY 73
>gi|5815432|gb|AAD52670.1|AF178849_1 high mobility group protein HMG1 [Gallus gallus]
Length = 214
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K+ YEK+MKNY
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|380083124|gb|AFD33645.1| high mobility group box 1, partial [Gallus gallus]
Length = 185
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K+ YEK+MKNY
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|344245608|gb|EGW01712.1| High mobility group protein B1 [Cricetulus griseus]
Length = 162
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K + P S+ K GE W S + DK PY KA
Sbjct: 39 KDPNAPKRPPSAFFLFCSEYHPKIKGERP-GLSIGDAAKKLGETWNSTAAEDKQPYETKA 97
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 98 AKLKEQYEKDIADY 111
>gi|45382473|ref|NP_990233.1| high mobility group protein B1 [Gallus gallus]
gi|326914268|ref|XP_003203448.1| PREDICTED: high mobility group protein B1-like [Meleagris
gallopavo]
gi|4140289|emb|CAA76978.1| high mobility group 1 protein [Gallus gallus]
gi|60098903|emb|CAH65282.1| hypothetical protein RCJMB04_15a21 [Gallus gallus]
Length = 215
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K+ YEK+MKNY
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|145541886|ref|XP_001456631.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424443|emb|CAK89234.1| unnamed protein product [Paramecium tetraurelia]
Length = 235
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 65/108 (60%), Gaps = 5/108 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+DPN PK+P + FF+F +++RE+ +P+ K + + + G KW SMSE +K PYV +
Sbjct: 46 RDPNAPKKPLTPFFLFNQKYREKVVDRNPEIK-LTQISQMAGNKWSSMSEQEKKPYVDQY 104
Query: 93 EKRKVEYEKDMKNYNRRQAEGTKPEEEEESE----KSMSEVNDEDDDE 136
K +YE+++K+YN + T ++ ++SE KSM D + D+
Sbjct: 105 NAAKEKYEQELKDYNEKNGIETNDKKRKKSEKVDDKSMKSALDHNIDD 152
>gi|303304752|emb|CBD77423.1| high mobility group box 2 protein [Plecoglossus altivelis]
Length = 215
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFFVF + R + K ++P S+ + K GE W + DK PY AKA
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRARIKGENP-GISIGDIAKKLGELWSKQTPKDKQPYEAKAG 150
Query: 94 KRKVEYEKDMKNYNRRQAEGTK 115
K K +YEKD+ Y + G K
Sbjct: 151 KLKEKYEKDVAAYRAKSGAGGK 172
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDPNKP+ S++ F++ RE++KK HP + + + K E+WK+MS +K +
Sbjct: 3 GKDPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFSEFSKKCSERWKTMSAKEKVKFED 62
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV Y+++MK Y
Sbjct: 63 LAKGDKVRYDREMKGY 78
>gi|45382755|ref|NP_990817.1| high mobility group protein B2 [Gallus gallus]
gi|123373|sp|P26584.2|HMGB2_CHICK RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|211927|gb|AAA48818.1| non-histone chromosomal protein [Gallus gallus]
Length = 207
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K DHP S+ K GE W DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQLAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A + E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>gi|392575401|gb|EIW68534.1| hypothetical protein TREMEDRAFT_32029 [Tremella mesenterica DSM
1558]
Length = 116
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F++++R + K DHP + S GK GEKWK+MS A+K P+ A
Sbjct: 26 KDPNAPKRGLSAYMFFVQDYRPKIKNDHP-DVSFGETGKLLGEKWKAMSAAEKKPFEDLA 84
Query: 93 EKRKVEYEKDMKNY 106
K K+ EKD K Y
Sbjct: 85 AKDKLRAEKDKKAY 98
>gi|225195621|gb|ACN82088.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F EFR + K++ P S+ V K GE W S +K PY KA
Sbjct: 78 KDPNAPKRPPSAFFIFCAEFRPKVKEETP-GLSIGDVAKKLGEMWNKTSSEEKQPYEKKA 136
Query: 93 EKRKVEYEKDMKNY 106
+ K +YEKD+ Y
Sbjct: 137 ARLKEKYEKDITAY 150
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK HP+ + + K E+WK+MS +K + A+ K YE+
Sbjct: 2 SSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARYER 61
Query: 102 DMKNY 106
+MKNY
Sbjct: 62 EMKNY 66
>gi|52345682|ref|NP_001004888.1| high mobility group box 3 [Xenopus (Silurana) tropicalis]
gi|49522962|gb|AAH75290.1| MGC88931 protein [Xenopus (Silurana) tropicalis]
gi|89267024|emb|CAJ81774.1| high-mobility group box 3 [Xenopus (Silurana) tropicalis]
Length = 202
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++ +K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDGEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAYFVQTCREEHKKKNPEIPVNFAEFSKKCSERWKTMSAKEKSKFDDLAKADKVRYDR 73
Query: 102 DMKNY 106
+MK++
Sbjct: 74 EMKDF 78
>gi|348541671|ref|XP_003458310.1| PREDICTED: high mobility group-T protein-like [Oreochromis
niloticus]
Length = 206
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
+N PA+ G+K K KDPN PKRP SAFF+F EFR + K + P S+ V K GE
Sbjct: 75 MNYVPARGGKKK-KKYKDPNAPKRPPSAFFIFCSEFRPKVKGESP-GLSIGDVAKRLGEM 132
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 114
W S + DK PY KA K K +YEKD+ Y + G+
Sbjct: 133 WNSTAAEDKQPYEKKAAKLKEKYEKDIAAYRAKGKPGS 170
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + A K E+WK+MS +K +
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSAKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A + K YE++M NY
Sbjct: 63 ARQDKARYEREMMNY 77
>gi|221219844|gb|ACM08583.1| High mobility group protein B2 [Salmo salar]
Length = 211
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K KSG+ KDPN PKRP SAFFVF EFR K++ P S+ K G W
Sbjct: 80 PPKGMAKSGRKKKDPNAPKRPPSAFFVFSAEFRPTVKQEFP-GCSIGQCAKKLGIMWGQQ 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
+ K P+ KA + + +Y+KDM Y
Sbjct: 139 TPTQKQPFEEKALRLREKYDKDMAAY 164
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
D NKPK SA+ F++ RE++K+ HP ++ + A K E+W++ + D+ + A
Sbjct: 5 DVNKPKGKTSAYAFFVQTCREEHKRKHPEQSVNFAEFSKQCSERWRASTATDRRRFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE+DM+ Y
Sbjct: 65 KNDKVRYERDMRGY 78
>gi|356528116|ref|XP_003532651.1| PREDICTED: high mobility group protein B2-like [Glycine max]
Length = 234
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 34 DPNKPKRPASAFF----VFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
D KPK+ SAFF +FME+FR+++++ +P KS+ +GKA GEKWK+M+ +K Y
Sbjct: 41 DAMKPKKSPSAFFPLFSLFMEDFRKEFQEQNPDIKSMYDIGKACGEKWKTMTYEEKVKYY 100
Query: 90 AKAEKRKVEYEKDMKNYN 107
A ++++E+++ M +N
Sbjct: 101 DIASEKRIEFDRAMAKFN 118
>gi|345320167|ref|XP_001521836.2| PREDICTED: FACT complex subunit SSRP1-like, partial
[Ornithorhynchus anatinus]
Length = 295
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
GK KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK M++ K +
Sbjct: 118 GKKGKDPNAPKRPMSAYMLWLNASREKIKADHP-GISITDLSKKAGEIWKGMTKEKKEEW 176
Query: 89 VAKAEKRKVEYEKDMKNYN 107
KAE+ K EYEK MK Y+
Sbjct: 177 DRKAEEAKREYEKAMKEYS 195
>gi|218117885|dbj|BAH03305.1| structure-specific recognition protein 1 [Gallus gallus]
Length = 706
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 579 AGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
>gi|449272347|gb|EMC82325.1| FACT complex subunit SSRP1 [Columba livia]
Length = 704
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AKL ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKLVKDRKPRKKQPES-KKGKDPNAPKRPMSAYMLWLNASRERIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
GE WK+MS+ K + KAE + +YEK MK Y+
Sbjct: 579 AGELWKAMSKEKKEEWDRKAEDARRDYEKAMKEYS 613
>gi|57524786|ref|NP_001005796.1| FACT complex subunit SSRP1 [Gallus gallus]
gi|110283005|sp|Q04678.2|SSRP1_CHICK RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53128417|emb|CAG31300.1| hypothetical protein RCJMB04_4n20 [Gallus gallus]
Length = 706
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 579 AGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
>gi|241952671|ref|XP_002419057.1| HMG-like DNA binding protein, putative; high mobility group
protein, putative; non-histone DNA-binding protein,
putative [Candida dubliniensis CD36]
gi|223642397|emb|CAX42640.1| HMG-like DNA binding protein, putative [Candida dubliniensis CD36]
Length = 312
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
A+DP+ PKRP +A+ +F E +E+ K+D P + + + K+ E WKS+SE + PY
Sbjct: 142 ARDPDLPKRPTNAYLIFCEMEKERIKQDDP---NASDLSKSMTEAWKSLSEERRRPYYKL 198
Query: 92 AEKRKVEYEKDMKNYNRRQAEGTKPE 117
E ++ Y+++M YN+++ G +P+
Sbjct: 199 YEDDRIRYQREMAEYNQKKGNGGEPD 224
>gi|326920276|ref|XP_003206400.1| PREDICTED: FACT complex subunit SSRP1-like [Meleagris gallopavo]
Length = 706
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 579 AGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
>gi|145536343|ref|XP_001453899.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421632|emb|CAK86502.1| unnamed protein product [Paramecium tetraurelia]
Length = 236
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+DPN PK+P +AFF+F +++R++ + +P+ K + + + G KW SMSE +K PY+ +
Sbjct: 47 RDPNAPKKPLTAFFLFNQKYRQKVVERNPEIK-LTQISQMAGNKWTSMSEQEKKPYLDQY 105
Query: 93 EKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
K +Y++++K+YN + T ++ ++SEK
Sbjct: 106 NAAKEKYDQELKDYNEKNGIETNDKKRKKSEK 137
>gi|148229870|ref|NP_001080585.1| high mobility group box 3 [Xenopus laevis]
gi|27882654|gb|AAH44009.1| Hmgb3-prov protein [Xenopus laevis]
Length = 202
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P ++ V K GE W ++S+++K PY K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GITIGDVAKKLGEMWNNLSDSEKQPYNNKGA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
>gi|302684321|ref|XP_003031841.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune H4-8]
gi|300105534|gb|EFI96938.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune H4-8]
Length = 114
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
KA KDPN PKR SA+ F +++RE+ K ++P + S +GK G KWK M E +K PYV
Sbjct: 23 KAKKDPNAPKRALSAYMFFSQDWRERVKAENP-DASFGELGKILGAKWKEMDEDEKKPYV 81
Query: 90 AKAEKRKVEYEKDMKNYN-RRQAEGTKPEEEEE 121
AKA K K E D Y+ ++ AE ++ +E++E
Sbjct: 82 AKAAKDKERAEADKAAYDEKKSAEASEADEDDE 114
>gi|291392907|ref|XP_002712835.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 208
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK P KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDVAKKLGEMWNNTAAGDKQPCERKA 148
Query: 93 EKRKVEYEKDMKNYNRRQAEG 113
K KV+YEK + Y QA+G
Sbjct: 149 AKLKVKYEKGIAAY---QAKG 166
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ E++KK HP + + + K E+WK+MS K + A
Sbjct: 5 DPKKPRGKMSSYTFFVQTCPEKHKKRHPDASVNFSEFSKKCSERWKTMSAKKKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKIY 78
>gi|118343938|ref|NP_001071793.1| transcription factor protein [Ciona intestinalis]
gi|70570759|dbj|BAE06616.1| transcription factor protein [Ciona intestinalis]
Length = 164
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K ++ K+ K KD N PK+P +A+F+FM + R++ K++P + S+ + K G+KW+
Sbjct: 3 KTKRSSLKTLKFRKDKNAPKKPLTAYFIFMNDCRQKVIKENP-SLSITEISKLVGKKWRE 61
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYN 107
S DK P+ KA K + EY K ++ YN
Sbjct: 62 TSTKDKEPFNKKAAKLREEYNKKLEKYN 89
>gi|226479042|emb|CAX73016.1| structure specific recognition protein 1 [Schistosoma japonicum]
Length = 679
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN P RP SA+F++ E RE+ K SVA V KAGGE W++M K+ Y ++
Sbjct: 590 KDPNAPTRPLSAYFLWFNENREKIAKSLSGQNSVAEVAKAGGELWRNMDSETKSTYQSRV 649
Query: 93 EKRKVEYEKDMKNY 106
++ K +Y++D++ Y
Sbjct: 650 DELKKKYQEDLRVY 663
>gi|335892930|gb|AEH59760.1| high mobility group box 2 [Lethenteron camtschaticum]
Length = 194
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K RK+ KDPN PKRP SAFFVF E R + K DHP + + K GE W
Sbjct: 77 NYVPPKGKRKT----KDPNAPKRPPSAFFVFCSEHRPKVKADHP-GLGIGEIAKRLGEMW 131
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
++ K+PY KA K K +YEKD+ Y
Sbjct: 132 GLLTPETKSPYEKKAAKLKEKYEKDVAAY 160
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+P KP+ S++ F++ RE++KK HP+ + + A K E+WK+MS +KA + A
Sbjct: 5 EPGKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSPKEKARFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KADKARYDREMKNY 78
>gi|193787044|dbj|BAG51867.1| unnamed protein product [Homo sapiens]
Length = 176
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 51 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 109
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 110 AKLKEKYEKDIAAY 123
>gi|229367676|gb|ACQ58818.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F +FR + K +HP ++ K GE W
Sbjct: 76 NYDPPKGQKK--KRFKDPNAPKRPPSAFFLFCGDFRPKVKSEHP-GLTIGDTAKKLGEMW 132
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S S +K PY KA K K +Y+KD+ Y
Sbjct: 133 NSSSAENKQPYERKAAKLKEKYDKDIVAY 161
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KPK S++ F++ RE++KK HP+ + + A K E+WK+MS+ K +
Sbjct: 3 KDPRKPKGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSQKGKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNYN 107
A+ KV YE+DMKNY+
Sbjct: 63 AKLDKVRYERDMKNYD 78
>gi|426397135|ref|XP_004064781.1| PREDICTED: high mobility group protein B3-like [Gorilla gorilla
gorilla]
Length = 221
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + G+K KDPN KRP S FF+F EFR + K +P S+ + K GE W +
Sbjct: 100 PVEGGKK-----KDPNALKRPLSGFFLFCSEFRPKIKSTNP-GISIGDMAKKLGEMWINY 153
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ +K PY+ KA K +YEKD+ +Y
Sbjct: 154 SDREKQPYITKAADLKEKYEKDVADY 179
>gi|410256408|gb|JAA16171.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKRP S FF+F E R + K +P SV V K GE W ++++++K PY+ KA
Sbjct: 89 DPSAPKRPPSGFFLFSSEIRPKIKSTNP-GISVGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|229365968|gb|ACQ57964.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F +FR + K +HP ++ K GE W
Sbjct: 76 NYDPPKGQKK--KRFKDPNAPKRPPSAFFLFCGDFRPKVKSEHP-GLTIGDTAKKLGEMW 132
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S S +K PY KA K K +Y+KD+ Y
Sbjct: 133 NSSSAENKQPYERKAAKLKEKYDKDIVAY 161
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KPK S++ F++ RE++KK HP+ + + A K E+WK+MS+ +K +
Sbjct: 3 KDPRKPKGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSQKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNYN 107
A+ KV YE+DMKNY+
Sbjct: 63 AKLDKVRYERDMKNYD 78
>gi|119187239|ref|XP_001244226.1| hypothetical protein CIMG_03667 [Coccidioides immitis RS]
gi|303317166|ref|XP_003068585.1| Nonhistone chromosomal protein 6B, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108266|gb|EER26440.1| Nonhistone chromosomal protein 6B, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320038503|gb|EFW20438.1| nucleosome binding protein Nhp6a [Coccidioides posadasii str.
Silveira]
gi|392870942|gb|EAS32789.2| non-histone chromosomal protein 6 [Coccidioides immitis RS]
Length = 102
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
GR++ K KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+
Sbjct: 12 GRRAEKKKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALSDKQ 70
Query: 85 KAPYVAKAEKRKVEYEKDMKNYN 107
+APY KA K YE + NYN
Sbjct: 71 RAPYEEKAAADKKRYEDEKANYN 93
>gi|111154063|ref|NP_892035.2| FACT complex subunit SSRP1 [Mus musculus]
gi|209862973|ref|NP_001129553.1| FACT complex subunit SSRP1 [Mus musculus]
gi|110283006|sp|Q08943.2|SSRP1_MOUSE RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|74138726|dbj|BAE27178.1| unnamed protein product [Mus musculus]
gi|74144584|dbj|BAE27280.1| unnamed protein product [Mus musculus]
gi|74144625|dbj|BAE27299.1| unnamed protein product [Mus musculus]
gi|74177273|dbj|BAE34555.1| unnamed protein product [Mus musculus]
Length = 708
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 23 KAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK M
Sbjct: 530 KSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGM 588
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ K + KAE + EYEK MK Y
Sbjct: 589 SKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|255544145|ref|XP_002513135.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223548146|gb|EEF49638.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 196
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 22/106 (20%)
Query: 41 PASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 100
P +AFF+F++EFR+ +K+ +P +K V V K GEKWK+M++ +K PY KA + K EY+
Sbjct: 103 PPTAFFIFLDEFRKTFKEANPDSKDVKRVAKEAGEKWKAMTDEEKKPYADKATELKAEYD 162
Query: 101 KDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDDE 146
K + N N E+ D+EG E+DD E
Sbjct: 163 KALGEVN----------------------NAENKDDEGGSEKDDAE 186
>gi|148673911|gb|EDL05858.1| mCG144566 [Mus musculus]
Length = 240
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 115 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 173
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 174 AKLKEKYEKDIAAY 187
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 30 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 89
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 90 KADKARYEREMKTY 103
>gi|443724197|gb|ELU12309.1| hypothetical protein CAPTEDRAFT_56147, partial [Capitella teleta]
Length = 196
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
+D N+PKRP SA+F+++ FR + K P NK + +A GE WK ++E +KAPY
Sbjct: 93 GRDKNRPKRPQSAYFLWLAGFRTRMKDKIPVNKELL---RAAGEHWKRLTEVEKAPYEQM 149
Query: 92 AEKRKVEYEKDMKNYN 107
AE + +YE+ M+ YN
Sbjct: 150 AEGERRKYEEAMRQYN 165
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 20 KPAKAGRKSGKAAK--DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+P A K GK K DPN+PKRP SA+F ++ R + +K + VA K + W
Sbjct: 3 RPKGATTKGGKRKKNKDPNRPKRPTSAYFFYVAHCRAECEKRGERITRVAQWTKEISQVW 62
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
+ M+ D+ + AKA K YE+ M Y
Sbjct: 63 REMTPEDRKGFDAKAVVDKARYEEQMNRY 91
>gi|8170740|gb|AAB19500.2| HMG1-related DNA-binding protein [Mus sp.]
Length = 708
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 23 KAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK M
Sbjct: 530 KSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGM 588
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ K + KAE + EYEK MK Y
Sbjct: 589 SKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|332847763|ref|XP_003315517.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan troglodytes]
gi|397485725|ref|XP_003813991.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 207
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K KDPN PKRP S FF+F EF + K +P + V K E WK++
Sbjct: 80 PAKGGKK-----KDPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLSEMWKNL 133
Query: 81 SEADKAPYVAKAEKRKVEYEKDM 103
++++K PY+ +A K K +YEKD+
Sbjct: 134 NDSEKQPYITQAAKLKEKYEKDV 156
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +PK + A K E+WK+MS+ +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPKVPVNFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73
Query: 102 DMKNY 106
++K+Y
Sbjct: 74 EIKDY 78
>gi|300122042|emb|CBK22616.2| unnamed protein product [Blastocystis hominis]
Length = 224
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 18 NKKP-AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
NK+P K K GK DP+KPK+P S + + E REQ KK++P+ K + + K GEK
Sbjct: 5 NKEPKTKENTKRGKKEVDPDKPKKPLSGYMRYCNEQREQVKKENPELK-LTEISKVLGEK 63
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
WK +SE +K PY E K +Y+ M+ Y + G K
Sbjct: 64 WKELSEEEKKPYQDAYEADKEKYDLQMEEYKKTHPTGKK 102
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 70/122 (57%), Gaps = 7/122 (5%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADK 85
+GK DPNKPKRP S++ +F + RE+ K+ +P NK + + G+ WK + E +K
Sbjct: 99 TGKKNADPNKPKRPLSSYIIFSNDKREEVKRKNPDMSNKEITTLL---GKMWKELPEEEK 155
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQAEGTK--PEEEEESEKSMSEVNDEDDDEEGSGEED 143
Y + + K YE+ M Y R E + P++++E++ +M +V+ E++ + + EE
Sbjct: 156 QEYEKQHAEEKKAYEEKMGEYRREHPELKEKTPKKQKETKSTMKKVSSEEEAVDSNEEES 215
Query: 144 DD 145
++
Sbjct: 216 EN 217
>gi|27502780|gb|AAH42502.1| Ssrp1 protein [Mus musculus]
Length = 711
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 23 KAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK M
Sbjct: 530 KSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGM 588
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ K + KAE + EYEK MK Y
Sbjct: 589 SKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|351698285|gb|EHB01204.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 215
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 KKAAKLKEKYEKDITAY 162
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ E +KK HP + + + K G E+WK++S +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCGEDHKKKHPDASVNFSEFSKKGSERWKTISAEEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|126327421|ref|XP_001367294.1| PREDICTED: high mobility group protein B1-like isoform 2
[Monodelphis domestica]
Length = 216
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|91091374|ref|XP_973014.1| PREDICTED: similar to AGAP012335-PA [Tribolium castaneum]
Length = 712
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 8/109 (7%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
+V++KP +K K +KD NKPKRP++AF +++ E R++ K D+P K + + K GGE
Sbjct: 534 TVSEKPR---QKRAKKSKDENKPKRPSTAFMLWLNEMRDKIKADNPGIK-ITEIAKKGGE 589
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
WK + DK+ + KA K K EY K MK Y + G+K E+++ SEK
Sbjct: 590 MWKELK--DKSEWEGKAAKAKEEYNKAMKEY--EASGGSKSEDKKSSEK 634
>gi|426236471|ref|XP_004012192.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 213
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGNVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|297706944|ref|XP_002830283.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pongo abelii]
Length = 125
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 9/96 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ PN PKRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 18 PAKGGKNH------PNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVVKKLGEMWNNL 70
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY-NRRQAEGTK 115
++++K PYV K K K +YEKD+ +Y ++ + +GTK
Sbjct: 71 NDSEKQPYVTKVAKLK-KYEKDVADYKSKGKLDGTK 105
>gi|300677966|gb|ADK27290.1| high-mobility-group B1a [Gekko japonicus]
Length = 215
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87
S K KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W + + DK P
Sbjct: 85 SKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAGDDKQP 143
Query: 88 YVAKAEKRKVEYEKDMKNY 106
+ KA K K +YEKD+ Y
Sbjct: 144 FEKKAAKLKEKYEKDIAAY 162
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MKNY
Sbjct: 65 KGDKVRYEREMKNY 78
>gi|432102789|gb|ELK30264.1| High mobility group protein B1 [Myotis davidii]
Length = 245
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|148682766|gb|EDL14713.1| mCG116825 [Mus musculus]
Length = 162
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 41 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 99
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 100 AKLKEKYEKDIAAY 113
>gi|109098276|ref|XP_001102554.1| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMS 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|414585863|tpg|DAA36434.1| TPA: hypothetical protein ZEAMMB73_396569 [Zea mays]
Length = 119
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KR + FF F+ EFR QY + HP+ K V V KA GEKW+SMS+ +KA Y ++
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGGSKKQDGKA 79
Query: 99 YEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSG 140
+K+ + + +A+ + +E E S KS SEV EDD+++G G
Sbjct: 80 SKKENTSSKKAKADVREGDEAEGSNKSKSEV--EDDEQDGRG 119
>gi|148709727|gb|EDL41673.1| mCG9102 [Mus musculus]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|351710199|gb|EHB13118.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 191
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK +K KDPN KRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 80 PAKGSKKK----KDPNATKRPPSGFFLFCSEFHPKIKSTNP-GISIGDVAKKLGEMWNNL 134
Query: 81 SEADKAPYVAKAEKRKVEYEKDM 103
++++K PY+ KA K K +YEKD+
Sbjct: 135 NDSEKQPYITKAAKLKEKYEKDV 157
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P + A K E+WK++S +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPDVPVNFAEFSKKCSERWKTVSGKEKSKFDEMAKADKVHYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|26350077|dbj|BAC38678.1| unnamed protein product [Mus musculus]
Length = 181
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|3342573|gb|AAC27651.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + + E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSERCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|30584163|gb|AAP36330.1| Homo sapiens high-mobility group box 1 [synthetic construct]
gi|54697182|gb|AAV38963.1| high-mobility group box 1 [synthetic construct]
gi|54697184|gb|AAV38964.1| high-mobility group box 1 [synthetic construct]
gi|61367269|gb|AAX42974.1| high-mobility group box 1 [synthetic construct]
gi|61367275|gb|AAX42975.1| high-mobility group box 1 [synthetic construct]
gi|61371572|gb|AAX43692.1| high-mobility group box 1 [synthetic construct]
Length = 216
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|417397281|gb|JAA45674.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 216
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 149
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 AKLKEKYEKDIAAY 163
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKN 105
+ K YE++MK
Sbjct: 65 KADKARYEREMKT 77
>gi|270014157|gb|EFA10605.1| hypothetical protein TcasGA2_TC012866 [Tribolium castaneum]
Length = 840
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 8/109 (7%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
+V++KP + K K +KD NKPKRP++AF +++ E R++ K D+P K + + K GGE
Sbjct: 662 TVSEKPRQ---KRAKKSKDENKPKRPSTAFMLWLNEMRDKIKADNPGIK-ITEIAKKGGE 717
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
WK + DK+ + KA K K EY K MK Y + G+K E+++ SEK
Sbjct: 718 MWKELK--DKSEWEGKAAKAKEEYNKAMKEY--EASGGSKSEDKKSSEK 762
>gi|225195617|gb|ACN82086.1| high-mobility group box 1 [Carassius auratus]
gi|225195619|gb|ACN82087.1| high-mobility group box 1 [Megalobrama amblycephala]
gi|225195623|gb|ACN82089.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F EFR + K++ P S+ V K GE W S +K P+
Sbjct: 75 KRFKDPNAPKRPPSAFFIFCSEFRPKVKEETP-GLSIGDVAKKLGEMWNKTSAEEKQPFE 133
Query: 90 AKAEKRKVEYEKDMKNY 106
KA + K +YEKD+ Y
Sbjct: 134 KKAARLKEKYEKDITAY 150
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK HP+ + + K E+WK+MS +K + A++ KV YE+
Sbjct: 2 SSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKQDKVRYER 61
Query: 102 DMKNY 106
+MKNY
Sbjct: 62 EMKNY 66
>gi|190195542|gb|ACE73639.1| high-mobility group box 1 (predicted) [Sorex araneus]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|1806648|gb|AAB41544.1| structure-specific recognition protein 1 [Bos taurus]
Length = 460
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP SV + K GE WK MS+ K +
Sbjct: 290 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWKGMSKEKKEEWD 348
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 349 RKAEDARREYEKAMKEY 365
>gi|321476548|gb|EFX87508.1| hypothetical protein DAPPUDRAFT_306496 [Daphnia pulex]
Length = 191
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKR SAFF F + R K+ HP+ ++ + K G +W +A KA Y
Sbjct: 94 KQVKDPNAPKRSLSAFFWFCHDLRGHVKEQHPEY-TLGEIAKELGRRWGVSDDATKAQYA 152
Query: 90 AKAEKRKVEYEKDMKNYNRRQAE 112
AKAE+ + YE+DM Y + + E
Sbjct: 153 AKAEQDRARYERDMNAYKKSKLE 175
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY 88
+A D NKP+ +A+ FM+ RE++K +P +N + +WK M+E DK +
Sbjct: 3 RAKGDSNKPRGRMTAYAYFMQTCREEHKNKYPDENVVFLEFSRRCAGQWKLMTENDKKRF 62
Query: 89 VAKAEKRKVEYEKDMKNY 106
AE+ K+ +E +M++Y
Sbjct: 63 QGMAERDKLRFENEMRHY 80
>gi|83014391|ref|XP_918585.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|5764680|gb|AAC27653.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAEEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|157820087|ref|NP_001102843.1| high mobility group box 1 like [Rattus norvegicus]
gi|149043247|gb|EDL96779.1| rCG50935 [Rattus norvegicus]
Length = 214
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIPAY 162
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|3551257|dbj|BAA32827.1| 98b [Daucus carota]
Length = 502
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 6/91 (6%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P KPK P SAFF+FM E R + K+V VGK GE+WK+M+E +KAPY A+K
Sbjct: 287 PLKPKHPVSAFFLFMNERRADLVAE---KKNVLEVGKITGEEWKNMTEKEKAPYEEMAKK 343
Query: 95 RKVEYEKDMKNYNRR---QAEGTKPEEEEES 122
K +Y + M+ Y ++ +A + EEEE S
Sbjct: 344 NKNQYLQQMEVYKKKKDEEAASLQKEEEELS 374
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEA 83
+K K DPNKPKRPAS+F +F +E R+ ++ P N ++ A+ KWK +S
Sbjct: 406 QKGEKKIVDPNKPKRPASSFLLFSKEARKTISEERPGINNSTLNALISV---KWKEISHE 462
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQA 111
+K + KA Y+K+M+ YN+ A
Sbjct: 463 EKQLWNEKAAGAMEAYKKEMEEYNKTTA 490
>gi|431920962|gb|ELK18731.1| High mobility group protein B1 [Pteropus alecto]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|55639639|ref|XP_509611.1| PREDICTED: high mobility group protein B1 isoform 15 [Pan
troglodytes]
gi|114649261|ref|XP_001140156.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan
troglodytes]
gi|114649265|ref|XP_001140328.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan
troglodytes]
gi|114649269|ref|XP_001140491.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan
troglodytes]
gi|332841128|ref|XP_003314147.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|332841133|ref|XP_003314149.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|397513185|ref|XP_003826902.1| PREDICTED: high mobility group protein B1 isoform 1 [Pan paniscus]
gi|397513187|ref|XP_003826903.1| PREDICTED: high mobility group protein B1 isoform 2 [Pan paniscus]
gi|397513189|ref|XP_003826904.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan paniscus]
gi|397513191|ref|XP_003826905.1| PREDICTED: high mobility group protein B1 isoform 4 [Pan paniscus]
gi|397513193|ref|XP_003826906.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan paniscus]
gi|397513195|ref|XP_003826907.1| PREDICTED: high mobility group protein B1 isoform 6 [Pan paniscus]
gi|397513197|ref|XP_003826908.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan paniscus]
gi|410047671|ref|XP_003952424.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047673|ref|XP_003952425.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047675|ref|XP_003952426.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047677|ref|XP_003952427.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047679|ref|XP_003952428.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047682|ref|XP_003952429.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047686|ref|XP_003952430.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047688|ref|XP_003952431.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|3342575|gb|AAC27652.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE +KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREGHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|5764678|gb|AAC27650.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+ S +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTKSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|48145843|emb|CAG33144.1| HMGB1 [Homo sapiens]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|620098|emb|CAA56631.1| high mobility group protein [Mus musculus]
gi|71681313|gb|AAI00313.1| High mobility group box 1 [Mus musculus]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|4504425|ref|NP_002119.1| high mobility group protein B1 [Homo sapiens]
gi|50950133|ref|NP_001002937.1| high mobility group protein B1 [Canis lupus familiaris]
gi|126352708|ref|NP_001075304.1| high mobility group protein B1 [Equus caballus]
gi|281182655|ref|NP_001162380.1| high mobility group protein B1 [Papio anubis]
gi|284005385|ref|NP_001164752.1| high mobility group protein B1 [Oryctolagus cuniculus]
gi|388453289|ref|NP_001252735.1| high mobility group protein B1 [Macaca mulatta]
gi|291397530|ref|XP_002715999.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|291399645|ref|XP_002716268.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|296203653|ref|XP_002748994.1| PREDICTED: high mobility group protein B1 isoform 2 [Callithrix
jacchus]
gi|297714815|ref|XP_002833818.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
gi|332242218|ref|XP_003270282.1| PREDICTED: high mobility group protein B1-like isoform 1 [Nomascus
leucogenys]
gi|332242222|ref|XP_003270284.1| PREDICTED: high mobility group protein B1-like isoform 3 [Nomascus
leucogenys]
gi|332242226|ref|XP_003270286.1| PREDICTED: high mobility group protein B1-like isoform 5 [Nomascus
leucogenys]
gi|332242228|ref|XP_003270287.1| PREDICTED: high mobility group protein B1-like isoform 6 [Nomascus
leucogenys]
gi|332242230|ref|XP_003270288.1| PREDICTED: high mobility group protein B1-like isoform 7 [Nomascus
leucogenys]
gi|332242232|ref|XP_003270289.1| PREDICTED: high mobility group protein B1-like isoform 8 [Nomascus
leucogenys]
gi|344284506|ref|XP_003414007.1| PREDICTED: high mobility group protein B1-like [Loxodonta africana]
gi|348583405|ref|XP_003477463.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
gi|426375079|ref|XP_004054375.1| PREDICTED: high mobility group protein B1-like isoform 1 [Gorilla
gorilla gorilla]
gi|426375081|ref|XP_004054376.1| PREDICTED: high mobility group protein B1-like isoform 2 [Gorilla
gorilla gorilla]
gi|426375083|ref|XP_004054377.1| PREDICTED: high mobility group protein B1-like isoform 3 [Gorilla
gorilla gorilla]
gi|426375085|ref|XP_004054378.1| PREDICTED: high mobility group protein B1-like isoform 4 [Gorilla
gorilla gorilla]
gi|426375087|ref|XP_004054379.1| PREDICTED: high mobility group protein B1-like isoform 5 [Gorilla
gorilla gorilla]
gi|426375089|ref|XP_004054380.1| PREDICTED: high mobility group protein B1-like isoform 6 [Gorilla
gorilla gorilla]
gi|426375091|ref|XP_004054381.1| PREDICTED: high mobility group protein B1-like isoform 7 [Gorilla
gorilla gorilla]
gi|426375093|ref|XP_004054382.1| PREDICTED: high mobility group protein B1-like isoform 8 [Gorilla
gorilla gorilla]
gi|441624073|ref|XP_004088962.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624077|ref|XP_004088963.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624084|ref|XP_004088964.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624090|ref|XP_004088965.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624094|ref|XP_004088966.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|123369|sp|P09429.3|HMGB1_HUMAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|61213476|sp|Q6YKA4.3|HMGB1_CANFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|75076928|sp|Q4R844.3|HMGB1_MACFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|119370722|sp|Q08IE6.3|HMGB1_HORSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028296|sp|B0CM99.1|HMGB1_CALJA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028297|sp|B1MTB0.1|HMGB1_CALMO RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028298|sp|A9RA84.1|HMGB1_PAPAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|32327|emb|CAA31110.1| unnamed protein product [Homo sapiens]
gi|1435197|gb|AAB08987.1| non-histone chromatin protein HMG1 [Homo sapiens]
gi|13097234|gb|AAH03378.1| High-mobility group box 1 [Homo sapiens]
gi|21410205|gb|AAH30981.1| High-mobility group box 1 [Homo sapiens]
gi|30582719|gb|AAP35586.1| high-mobility group box 1 [Homo sapiens]
gi|37380997|gb|AAQ91389.1| high mobility group protein 1 [Homo sapiens]
gi|37548602|gb|AAN11296.1| high mobility group protein B1 [Canis lupus familiaris]
gi|37722533|gb|AAN11319.1| high mobility group B1 protein [Canis lupus familiaris]
gi|44890726|gb|AAH66889.1| High-mobility group box 1 [Homo sapiens]
gi|45709178|gb|AAH67732.1| High-mobility group box 1 [Homo sapiens]
gi|51476884|emb|CAH18408.1| hypothetical protein [Homo sapiens]
gi|54697178|gb|AAV38961.1| high-mobility group box 1 [Homo sapiens]
gi|60654989|gb|AAX32058.1| high mobility group box 1 [synthetic construct]
gi|61357252|gb|AAX41359.1| high-mobility group box 1 [synthetic construct]
gi|67968740|dbj|BAE00728.1| unnamed protein product [Macaca fascicularis]
gi|115354285|dbj|BAF33339.1| high-mobility group box 1 [Equus caballus]
gi|119628862|gb|EAX08457.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628864|gb|EAX08459.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628865|gb|EAX08460.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628866|gb|EAX08461.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628867|gb|EAX08462.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|121073803|gb|ABM47301.1| high mobility group box 1 protein [Homo sapiens]
gi|152112978|gb|ABS29271.1| high-mobility group box 1 [Homo sapiens]
gi|158256420|dbj|BAF84183.1| unnamed protein product [Homo sapiens]
gi|162415900|gb|ABX89266.1| high-mobility group box 1 (predicted) [Papio anubis]
gi|165934066|gb|ABY74560.1| high-mobility group box 1 (predicted) [Callithrix jacchus]
gi|169402702|gb|ACA53510.1| high-mobility group box 1 (predicted) [Callicebus moloch]
gi|183396417|gb|ACC62098.1| high-mobility group box 1 (predicted) [Rhinolophus ferrumequinum]
gi|193783763|dbj|BAG53745.1| unnamed protein product [Homo sapiens]
gi|196050399|gb|ACG64310.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
gi|216397586|gb|ACJ72830.1| high-mobility group box 1 (predicted) [Oryctolagus cuniculus]
gi|261858262|dbj|BAI45653.1| high-mobility group box 1 [synthetic construct]
gi|335775462|gb|AEH58580.1| high mobility group protein B1-like protein [Equus caballus]
gi|351700460|gb|EHB03379.1| High mobility group protein B1 [Heterocephalus glaber]
gi|387542840|gb|AFJ72047.1| high mobility group protein B1 [Macaca mulatta]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|402854944|ref|XP_003892110.1| PREDICTED: high mobility group protein B1-like isoform 1 [Papio
anubis]
gi|402854946|ref|XP_003892111.1| PREDICTED: high mobility group protein B1-like isoform 2 [Papio
anubis]
Length = 214
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|397495503|ref|XP_003818592.1| PREDICTED: high mobility group protein B1-like [Pan paniscus]
Length = 209
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|348551709|ref|XP_003461672.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
Length = 214
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|109510563|ref|XP_001059688.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343404|ref|XP_003754879.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 213
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|41386729|ref|NP_788785.1| high mobility group protein B1 [Bos taurus]
gi|410947173|ref|XP_003980327.1| PREDICTED: high mobility group protein B1 [Felis catus]
gi|123367|sp|P10103.3|HMGB1_BOVIN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|417|emb|CAA31284.1| unnamed protein product [Bos taurus]
gi|73586656|gb|AAI02930.1| HMGB1 protein [Bos taurus]
gi|146231904|gb|ABQ13027.1| high-mobility group box 1 [Bos taurus]
gi|296481787|tpg|DAA23902.1| TPA: high mobility group protein B1 [Bos taurus]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|6754208|ref|NP_034569.1| high mobility group protein B1 [Mus musculus]
gi|6981026|ref|NP_037095.1| high mobility group protein B1 [Rattus norvegicus]
gi|407262920|ref|XP_003945388.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
gi|52783618|sp|P63159.2|HMGB1_RAT RecName: Full=High mobility group protein B1; AltName:
Full=Amphoterin; AltName: Full=Heparin-binding protein
p30; AltName: Full=High mobility group protein 1;
Short=HMG-1
gi|52783747|sp|P63158.2|HMGB1_MOUSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|9082303|gb|AAF82799.1|AF275734_1 amphoterin [Rattus norvegicus]
gi|53382|emb|CAA78042.1| non-histone chromosomal high-mobility group 1 protein [Mus
musculus]
gi|56365|emb|CAA68526.1| unnamed protein product [Rattus norvegicus]
gi|202885|gb|AAA40729.1| Amphoterin [Rattus norvegicus]
gi|208488|gb|AAA73006.1| high mobility group 1 protein [synthetic construct]
gi|437102|gb|AAA20508.1| HMG-1 [Mus musculus]
gi|13879238|gb|AAH06586.1| High mobility group box 1 [Mus musculus]
gi|14250281|gb|AAH08565.1| High mobility group box 1 [Mus musculus]
gi|26332344|dbj|BAC29902.1| unnamed protein product [Mus musculus]
gi|26351305|dbj|BAC39289.1| unnamed protein product [Mus musculus]
gi|38512146|gb|AAH61779.1| High mobility group box 1 [Rattus norvegicus]
gi|51859468|gb|AAH81839.1| High mobility group box 1 [Rattus norvegicus]
gi|52789475|gb|AAH83067.1| High mobility group box 1 [Mus musculus]
gi|54648288|gb|AAH85090.1| High mobility group box 1 [Mus musculus]
gi|56788766|gb|AAH88402.1| High mobility group box 1 [Rattus norvegicus]
gi|61403558|gb|AAH91741.1| High mobility group box 1 [Mus musculus]
gi|62739258|gb|AAH94030.1| High mobility group box 1 [Mus musculus]
gi|74186113|dbj|BAE34226.1| unnamed protein product [Mus musculus]
gi|84040262|gb|AAI10668.1| Hmgb1 protein [Mus musculus]
gi|84105496|gb|AAI11469.1| High mobility group box 1 [Mus musculus]
gi|149034811|gb|EDL89531.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034812|gb|EDL89532.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034813|gb|EDL89533.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|195539712|gb|AAI68143.1| High mobility group box 1 [Rattus norvegicus]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|332863449|ref|XP_001169802.2| PREDICTED: high mobility group protein B1-like, partial [Pan
troglodytes]
Length = 174
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|116283314|gb|AAH04848.1| Ssrp1 protein [Mus musculus]
Length = 633
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 23 KAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK M
Sbjct: 530 KSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGM 588
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ K + KAE + EYEK MK Y
Sbjct: 589 SKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|444707034|gb|ELW48343.1| High mobility group protein B1 [Tupaia chinensis]
Length = 203
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 136
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 137 AKLKEKYEKDIAAY 150
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK HP + + + K E+WK+MS +K + A+ K YE+
Sbjct: 2 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 61
Query: 102 DMKNY 106
+MK Y
Sbjct: 62 EMKTY 66
>gi|149030113|gb|EDL85190.1| rCG63106 [Rattus norvegicus]
Length = 201
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 136
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 137 AKLKEKYEKDIAAY 150
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK HP + + + K E+WK+MS +K + A+ K YE+
Sbjct: 2 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 61
Query: 102 DMKNY 106
+MK Y
Sbjct: 62 EMKTY 66
>gi|600761|gb|AAA57042.1| high mobility group 1 protein [Mus musculus]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|149691739|ref|XP_001488130.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 212
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+P KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 EPKKPRGRMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|301757910|ref|XP_002914802.1| PREDICTED: high mobility group protein B1-like [Ailuropoda
melanoleuca]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|296479353|tpg|DAA21468.1| TPA: high-mobility group box 1-like [Bos taurus]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAVDDKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++ K HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KVDKARYEREMKTY 78
>gi|380793129|gb|AFE68440.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|380793127|gb|AFE68439.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|119628863|gb|EAX08458.1| high-mobility group box 1, isoform CRA_b [Homo sapiens]
Length = 206
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|26341410|dbj|BAC34367.1| unnamed protein product [Mus musculus]
Length = 178
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|74181373|dbj|BAE29962.1| unnamed protein product [Mus musculus]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++K+ HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKRKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|51592117|ref|NP_001004034.1| high mobility group protein B1 [Sus scrofa]
gi|123371|sp|P12682.3|HMGB1_PIG RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|164490|gb|AAA31050.1| non-histone protein HMG1 [Sus scrofa]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKHPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444729709|gb|ELW70116.1| High mobility group protein B1 [Tupaia chinensis]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK +
Sbjct: 65 KADKAHYEREMKTF 78
>gi|123368|sp|P07156.1|HMGB1_CRIGR RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|49483|emb|CAA68441.1| high mobility group protein [Cricetulus griseus]
Length = 180
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 55 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 113
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 114 AKLKEKYEKDIAAY 127
>gi|149635755|ref|XP_001508702.1| PREDICTED: high mobility group protein B1-like [Ornithorhynchus
anatinus]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDAAVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|410057418|ref|XP_003954213.1| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 210
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP SV V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSVGDVAKKLGEMWNNAAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|402865885|ref|XP_003897133.1| PREDICTED: high mobility group protein B1-like [Papio anubis]
Length = 221
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 96 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 154
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 155 AKLKEKYEKDIAAY 168
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK +
Sbjct: 65 KADKARYEREMKTW 78
>gi|440298630|gb|ELP91261.1| HMG (high mobility group) box domain containing protein, partial
[Entamoeba invadens IP1]
Length = 214
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 4 GKSKSDTRNAKLSVNKK----------PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFR 53
G + D +N SV+ + + G+ +DPN PK+P + + +F+ E R
Sbjct: 74 GVTPLDIQNPICSVSYQSQQGLAKLETISSVGQSFAITKQDPNLPKKPMTPYLMFLNEHR 133
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
E++++ P+ K + + K E W+ M E DK Y+ KA+K +Y ++MK YN R
Sbjct: 134 EEFREKFPELK-ITEIAKKAAEIWRDMKEEDKQVYLDKAKKATEKYLEEMKTYNER 188
>gi|395520861|ref|XP_003764541.1| PREDICTED: high mobility group protein B1 [Sarcophilus harrisii]
Length = 230
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 101 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 159
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 160 KKAAKLKEKYEKDIAAY 176
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 19 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 78
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 79 KADKVRYEREMKTY 92
>gi|167744990|pdb|2YRQ|A Chain A, Solution Structure Of The Tandem Hmg Box Domain From Human
High Mobility Group Protein B1
Length = 173
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 94 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 152
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 153 KKAAKLKEKYEKDIAAY 169
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 12 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 71
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 72 KADKARYEREMKTY 85
>gi|159162414|pdb|1HME|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
gi|159162415|pdb|1HMF|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
Length = 77
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 60
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 61 AKLKEKYEKDIAAY 74
>gi|296810682|ref|XP_002845679.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
gi|238843067|gb|EEQ32729.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
Length = 103
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
GR K KDPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+
Sbjct: 13 GRGVEKKKKDPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSDKQ 71
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
+ PY KA K YE + YN RQ E
Sbjct: 72 RVPYEEKAATDKQRYEDEKAAYNSRQEE 99
>gi|167384542|ref|XP_001736998.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165900416|gb|EDR26737.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 112
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN+PKRP + +F+++ E R K++HP K V + K E+WK++ E +K Y AKA+
Sbjct: 23 PNRPKRPQTPYFLYLHEHRASIKEEHPDAK-VTEIAKIASEQWKALGEEEKKEYQAKADA 81
Query: 95 RKVEYEKDMKNYN 107
K +Y+KDM+ Y
Sbjct: 82 AKEQYKKDMEKYT 94
>gi|452839855|gb|EME41794.1| hypothetical protein DOTSEDRAFT_74007 [Dothistroma septosporum
NZE10]
Length = 108
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K K+ TR +K +V+K AG GK KDPN PKR SA+ F E R++ + D+P K
Sbjct: 3 KEKATTRGSKKAVDKS---AG---GKKKKDPNMPKRGLSAYMFFANEQRDKVRDDNPGIK 56
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
VGK GEKWK +SE KAPY AKA K YE++ Y
Sbjct: 57 -FGEVGKQLGEKWKGLSEKQKAPYEAKAAADKKRYEEEKAAYT 98
>gi|405963576|gb|EKC29138.1| FACT complex subunit SSRP1 [Crassostrea gigas]
Length = 757
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 10 TRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
+R+AK K P +K K+ KDPN PKRP SA+F++ RE+ KKD P + S+ +
Sbjct: 532 SRSAKTVREKLPGSEKKKKKKSKKDPNAPKRPQSAYFLWFNANREELKKDTP-DISITDL 590
Query: 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
K GE WK M + DK + KA + K EYEK M+ Y
Sbjct: 591 SKKAGEVWKQMEDTDKTEWNEKAAEAKKEYEKAMEEY 627
>gi|402875874|ref|XP_003901718.1| PREDICTED: high mobility group protein B2-like, partial [Papio
anubis]
Length = 248
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 127 PNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSQQSAKDKQPYEQKAAK 185
Query: 95 RKVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 186 LKEKYEKDIAAY 197
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 25 GRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSE 82
GR+S K DPNKP+ S++ F++ RE++K+ HP + A K E+WK+MS
Sbjct: 30 GRRSVTMGKGDPNKPRGKMSSYAFFVQTCREEHKEKHPDSSVGFAEFSKKCSERWKTMSA 89
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNY 106
+K+ + A+ KV Y+++MKNY
Sbjct: 90 KEKSKFEGMAKSGKVRYDREMKNY 113
>gi|403300479|ref|XP_003940964.1| PREDICTED: high mobility group protein B1-like [Saimiri boliviensis
boliviensis]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K G+ W + + DK PY
Sbjct: 87 KKLKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGKMWNNTAANDKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S+ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSCAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KVDKACYEREMKTY 78
>gi|255537735|ref|XP_002509934.1| transcription factor, putative [Ricinus communis]
gi|223549833|gb|EEF51321.1| transcription factor, putative [Ricinus communis]
Length = 514
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK+P SAFF+F E R + NK+V V K GE+WK+M+E K PY A+
Sbjct: 307 DPLKPKQPMSAFFLFSNERRASLLAE---NKNVREVAKIAGEQWKNMTEEQKGPYEEMAK 363
Query: 94 KRKVEYEKDMKNYNRR---QAEGTKPEEEE 120
+ K+ Y ++M+ Y ++ +A K EEEE
Sbjct: 364 RNKLRYMQEMEAYKQKKDEEAMNLKKEEEE 393
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+PAS+F +F +E R+ ++ P N ++ A+ KWK +SE ++ + AK
Sbjct: 432 DPNKPKKPASSFLIFSKEARKNLAQERPVINNSTLNALISV---KWKELSEEERQIWNAK 488
Query: 92 AEKRKVEYEKDMKNYNRRQA 111
A + Y+K+M+ YN+ A
Sbjct: 489 AAEAMEIYKKEMEEYNKTAA 508
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
RP+ + ++ ++ + K ++P N + G KWK++S DK PY K + K Y
Sbjct: 197 RPSPPYILWCKDQWNEVKNENP-NAEFKEISNILGAKWKNVSTEDKKPYEDKYQAEKEVY 255
Query: 100 EKDMKNYNRRQAEGTKPEEEEESEKSMSEV 129
+ + N +R++E K EEE+ +K+ E+
Sbjct: 256 LQVV-NKEKRESEAMKLLEEEQKQKTAMEL 284
>gi|27881711|gb|AAH44715.1| MGC52578 protein [Xenopus laevis]
Length = 212
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 2 KGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP 61
KG K++ + R K + K G GK KDPN PKRP SAFF+F E R Q K + P
Sbjct: 65 KGDKARYE-REMKTYIPPK----GETKGKRKKDPNAPKRPPSAFFIFCSEHRPQIKSETP 119
Query: 62 KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ K GE W + DK P+ KA K K +YEKD+ Y
Sbjct: 120 -GLSIGDTAKKLGELWAEQTPKDKLPHEQKAAKLKEKYEKDVAAY 163
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + + K E+WKSMS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSEFSKKCSERWKSMSAKEKGKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KGDKARYEREMKTY 78
>gi|281343903|gb|EFB19487.1| hypothetical protein PANDA_011742 [Ailuropoda melanoleuca]
Length = 607
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 516 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 569
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
MS+ K + KAE + EYEK MK Y + E +K
Sbjct: 570 GMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGESSK 606
>gi|148223673|ref|NP_001079576.1| HMG-X protein [Xenopus laevis]
gi|639691|dbj|BAA06440.1| HMG-X protein [Xenopus laevis]
Length = 212
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 2 KGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP 61
KG K++ + R K + K G GK KDPN PKRP SAFF+F E R Q K + P
Sbjct: 65 KGDKARYE-REMKTYIPPK----GETKGKRKKDPNAPKRPPSAFFIFCSEHRPQIKSETP 119
Query: 62 KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ K GE W + DK P+ KA K K +YEKD+ Y
Sbjct: 120 -GLSIGDTAKKLGELWAEQTPKDKLPHEQKAAKLKEKYEKDVAAY 163
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + + K E+WKSMS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSDFSKKCSERWKSMSAKEKGKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KGDKARYEREMKTY 78
>gi|148680486|gb|EDL12433.1| mCG1219 [Mus musculus]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY--VA 90
DP KP+ ++ F++ RE++KK HP + + + K E+WK+M +K + +A
Sbjct: 5 DPKKPRGKMYSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMYAKEKGKFEDIA 64
Query: 91 KAEKRKVEYEKDMKNY 106
KA+K YE++MK Y
Sbjct: 65 KADK--ARYEREMKTY 78
>gi|432113411|gb|ELK35821.1| FACT complex subunit SSRP1 [Myotis davidii]
Length = 709
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK+MS+ K +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKAMSKEKKEEWD 597
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 598 RKAEDARREYEKAMKEY 614
>gi|426232480|ref|XP_004010250.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP SV V K G+ W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSVGDVAKKLGQMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+P KP+ S++ F++ RE+ KK HP + + + K E+WK+MS +K + A
Sbjct: 5 EPKKPRGKMSSYAFFVQTCREERKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|224072172|ref|XP_002303636.1| high mobility group family [Populus trichocarpa]
gi|222841068|gb|EEE78615.1| high mobility group family [Populus trichocarpa]
Length = 480
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K K KDP KPK+P SAFF+F E R +NKSV V K GE+WK+M+E +
Sbjct: 262 KKTKKEKDPLKPKQPLSAFFLFCNERRAAL---LAENKSVLEVAKIAGEEWKNMTEKRRG 318
Query: 87 PYVAKAEKRKVEYEKDMKNYNRR---QAEGTKPEEEE 120
PY A+K + +Y ++M+ Y + +A K EEEE
Sbjct: 319 PYEEVAKKNREKYMQEMEAYKQTKDEEAMNLKKEEEE 355
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+PAS+F +F +E R+ + P N ++ A+ KWK ++E ++ + +K
Sbjct: 394 DPNKPKKPASSFLLFSKETRKSLMDERPGINNSTLTAMISV---KWKELNEEERQIWNSK 450
Query: 92 AEKRKVEYEKDMKNYNRRQAEGT 114
A + Y+K+++ Y++ A T
Sbjct: 451 AAEAMEAYKKELEEYSKSLAAAT 473
>gi|444705434|gb|ELW46861.1| FACT complex subunit SSRP1 [Tupaia chinensis]
Length = 704
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 528 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 581
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 582 GMSKEKKEEWDRKAEDARREYEKAMKEY 609
>gi|348566777|ref|XP_003469178.1| PREDICTED: high mobility group protein B2-like [Cavia porcellus]
Length = 211
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 PNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 151
Query: 95 RKVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 LKEKYEKDIAAY 163
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|397475678|ref|XP_003809257.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
Length = 165
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKRP S FF+F E R + K +P SV V K GE W ++++++K PY+ KA
Sbjct: 66 DPSAPKRPPSGFFLFSSEIRPKIKSTNP-GISVGDVAKKLGEMWNNLNDSEKQPYITKAA 124
Query: 94 KRKVEYEKDM 103
K K +YEKD+
Sbjct: 125 KLKEKYEKDV 134
>gi|426245460|ref|XP_004023562.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Ovis
aries]
Length = 703
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP SV + K GE WK
Sbjct: 527 KKPLEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWK 580
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE+ + EYEK MK Y
Sbjct: 581 GMSKEKKEEWDRKAEEARREYEKAMKEY 608
>gi|109469394|ref|XP_001076232.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392338825|ref|XP_003753645.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 214
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTASDDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD Y
Sbjct: 149 AKLKEKYEKDTAAY 162
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + V K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|354488105|ref|XP_003506211.1| PREDICTED: FACT complex subunit SSRP1-like isoform 1 [Cricetulus
griseus]
gi|354488107|ref|XP_003506212.1| PREDICTED: FACT complex subunit SSRP1-like isoform 2 [Cricetulus
griseus]
gi|344253527|gb|EGW09631.1| FACT complex subunit SSRP1 [Cricetulus griseus]
Length = 709
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 598 RKAEDARREYEKAMKEY 614
>gi|155371817|ref|NP_001094511.1| FACT complex subunit SSRP1 [Bos taurus]
gi|151554654|gb|AAI49986.1| SSRP1 protein [Bos taurus]
gi|440894802|gb|ELR47155.1| FACT complex subunit SSRP1 [Bos grunniens mutus]
Length = 709
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP SV + K GE WK
Sbjct: 533 KKPLEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|335281869|ref|XP_003353912.1| PREDICTED: FACT complex subunit SSRP1 [Sus scrofa]
Length = 709
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPTEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|348556930|ref|XP_003464273.1| PREDICTED: FACT complex subunit SSRP1-like [Cavia porcellus]
Length = 709
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 598 RKAEDARREYEKAMKEY 614
>gi|344299407|ref|XP_003421377.1| PREDICTED: FACT complex subunit SSRP1 [Loxodonta africana]
Length = 709
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|301774634|ref|XP_002922750.1| PREDICTED: FACT complex subunit SSRP1-like [Ailuropoda melanoleuca]
Length = 709
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|296479522|tpg|DAA21637.1| TPA: structure specific recognition protein 1 [Bos taurus]
Length = 709
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP SV + K GE WK
Sbjct: 533 KKPLEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|112491006|pdb|2GZK|A Chain A, Structure Of A Complex Of Tandem Hmg Boxes And Dna
Length = 159
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87
+ K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK P
Sbjct: 79 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQP 137
Query: 88 YVAKAEKRKVEYEKDMKNY 106
Y KA K K +YEKD+ Y
Sbjct: 138 YEKKAAKLKEKYEKDIAAY 156
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP +AF V+ + R + ++P+ ++ + + K G +WK ++EA+K P+ +A+K +
Sbjct: 6 KRPMNAFIVWSRDQRRKMALENPRMRN-SEISKQLGYQWKMLTEAEKWPFFQEAQKLQAM 64
Query: 99 YEKDMKNYNRRQAEGTK 115
+ + NY R+ E K
Sbjct: 65 HREKYPNYKYRKGETKK 81
>gi|28279681|gb|AAH45917.1| High-mobility group box 1 [Danio rerio]
gi|182891806|gb|AAI65307.1| Hmgb1 protein [Danio rerio]
Length = 205
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F EFR + K++ P S+ V K GE W +S +K PY
Sbjct: 86 KRFKDPNAPKRPPSAFFIFCSEFRPKVKEETP-GLSIGDVAKRLGEMWNKISSEEKQPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 145 KKAAKLKEKYEKDIAAY 161
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + K E+WK+MS +K +
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ K YE++MKNY
Sbjct: 63 AKLDKARYEREMKNY 77
>gi|42476233|ref|NP_955849.2| high mobility group protein B1 [Danio rerio]
gi|37681827|gb|AAQ97791.1| high-mobility group box 1 [Danio rerio]
gi|45595607|gb|AAH67193.1| High-mobility group box 1 [Danio rerio]
Length = 205
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F EFR + K++ P S+ V K GE W +S +K PY
Sbjct: 86 KRFKDPNAPKRPPSAFFIFCSEFRPKVKEETP-GLSIGDVAKRLGEMWNKISSEEKQPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 145 KKAAKLKEKYEKDIAAY 161
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + K E+WK+MS +K +
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ K YE++MKNY
Sbjct: 63 AKLDKARYEREMKNY 77
>gi|410973949|ref|XP_003993410.1| PREDICTED: FACT complex subunit SSRP1 [Felis catus]
Length = 709
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|407926962|gb|EKG19868.1| High mobility group HMG1/HMG2 [Macrophomina phaseolina MS6]
Length = 106
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KA + GK KDPN PKR SA+ F + R++ ++++P K VGK GE+WK++S
Sbjct: 11 TKASKADGKKKKDPNAPKRGLSAYMFFANDMRDKVREENPGIK-FGEVGKILGERWKALS 69
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNYN 107
E +APY AKA K YE + YN
Sbjct: 70 EKQRAPYEAKAANDKKRYEDEKAAYN 95
>gi|383872505|ref|NP_001244820.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|402893460|ref|XP_003909913.1| PREDICTED: FACT complex subunit SSRP1 [Papio anubis]
gi|355566511|gb|EHH22890.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
mulatta]
gi|355752113|gb|EHH56233.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
fascicularis]
gi|380784229|gb|AFE63990.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|383421069|gb|AFH33748.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|384949008|gb|AFI38109.1| FACT complex subunit SSRP1 [Macaca mulatta]
Length = 709
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|441639466|ref|XP_004090212.1| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 131
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN P+RP S FF+F EF + K +P S+ V K GE W ++++++K PYV K
Sbjct: 27 DPNAPQRPLSGFFLFCSEFCPEIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYVTKVA 85
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 86 KLK-KYEKDVADY 97
>gi|296218242|ref|XP_002755324.1| PREDICTED: FACT complex subunit SSRP1 [Callithrix jacchus]
Length = 709
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|431918516|gb|ELK17735.1| 182 kDa tankyrase-1-binding protein [Pteropus alecto]
Length = 2600
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKLDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 598 RKAEDARREYEKAMKEY 614
>gi|393219482|gb|EJD04969.1| HMG-box [Fomitiporia mediterranea MF3/22]
Length = 114
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Query: 10 TRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
TR A KPA+ GK KDPN PKR SA+ F +++RE+ K ++P + V
Sbjct: 10 TRKAAAGAADKPAR-----GKGKKDPNAPKRALSAYMFFSQDWRERVKAENP-DAGFGEV 63
Query: 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111
GK G KWK M E++K PY+ +A + K E++ NY ++ A
Sbjct: 64 GKLLGAKWKEMDESEKRPYIEQAARDKARAEEEKANYEKKSA 105
>gi|109490746|ref|XP_001074778.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392351213|ref|XP_003750876.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 211
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PK P SAFF+F E+R + K +HP S+ V K GE W + + DK PY A
Sbjct: 90 KDPNAPKTPPSAFFLFCSEYRPKIKGEHP-GLSIGDVVKKLGEMWTNTAADDKQPYEKMA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|291228964|ref|XP_002734447.1| PREDICTED: structure specific recognition protein-like
[Saccoglossus kowalevskii]
Length = 259
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102
+A+F+++ E RE KK P SVA + K GE WK M+E+DK Y A A + K++YE
Sbjct: 80 TAYFLWLNEKRESIKKSLP-GSSVAEISKRAGELWKKMTESDKKKYTALAAEEKIKYEDA 138
Query: 103 MKNYNRRQAEG 113
MK Y R+QA+G
Sbjct: 139 MKVYKRKQADG 149
>gi|444729655|gb|ELW70064.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP AFF+F E+ + K++HP + S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNVPKRPPLAFFLFCSEYHPKIKEEHP-DLSIGDVAKILGEMWNNTAADDKQPY- 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 145 EKAAKLKEKYEKDIAAY 161
>gi|384489718|gb|EIE80940.1| hypothetical protein RO3G_05645 [Rhizopus delemar RA 99-880]
Length = 176
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K K KDPN PKR S++ ++ + R + +HP K++ + K GE W +SE +KA
Sbjct: 44 KKKKVEKDPNAPKRNLSSYMLYSQAVRPKVAAEHPDMKAIE-IAKLVGEMWNKLSEKEKA 102
Query: 87 PYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
PY+ +AEK K+ +EK+ +Y A K + + E++ EV
Sbjct: 103 PYIKQAEKEKIRFEKENASYKTTLASEEKQQPAKRKERNAEEVT 146
>gi|345783817|ref|XP_859953.2| PREDICTED: FACT complex subunit SSRP1 isoform 4 [Canis lupus
familiaris]
Length = 711
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 535 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKADHP-GISITDLSKKAGEIWK 588
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 589 GMSKEKKEEWDRKAEDARREYEKAMKEY 616
>gi|74138677|dbj|BAE27155.1| unnamed protein product [Mus musculus]
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGKHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444518919|gb|ELV12461.1| High mobility group protein B3 [Tupaia chinensis]
Length = 185
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 7/86 (8%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K +DPN PKRP S FF+F EF + + ++P S+ V K GE W +
Sbjct: 80 PAKGGKKK----RDPNAPKRPPSGFFLFCSEFCPKIRSNNP-GISIGDVAKKLGEMWNNK 134
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+++K PY KA K++YEKD+ +Y
Sbjct: 135 SDSEKQPYNTKAT--KLKYEKDVADY 158
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ A K G E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYTFFVQTCREKHKKKNPEVPVKFAEFSKKGSERWKTMSGKEKSKFDEMAKVNKVHYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|409075359|gb|EKM75740.1| hypothetical protein AGABI1DRAFT_116212 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198009|gb|EKV47935.1| hypothetical protein AGABI2DRAFT_191645 [Agaricus bisporus var.
bisporus H97]
Length = 262
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 6 SKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS 65
S + R A ++++ A RK KDPN PKRPAS++ +F E R+Q K HP+ +
Sbjct: 49 SNTHKRKADVALDDDEAPKKRKRNAKPKDPNAPKRPASSYILFQNEIRKQLKDQHPELTN 108
Query: 66 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
A + + WK MSE +KA Y E K Y +D K Y+ R E
Sbjct: 109 -AELLNMISDIWKKMSEDEKATYHKLVEDAKERYSQDKKAYDSRTPE 154
>gi|426244704|ref|XP_004016160.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 203
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K G+ W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGQMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|426236473|ref|XP_004012193.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K G+ W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGQMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|51858856|gb|AAH81424.1| Hmgb3b protein [Danio rerio]
Length = 166
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G+K K KDPN P+RP S FF+F E R K +P + + V K G W ++S+++
Sbjct: 81 GKKGRKQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNP-SLGIGDVAKKLGGMWNNLSDSE 139
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQ 110
K P+++ A+K K +Y+KDM Y +++
Sbjct: 140 KQPFLSNADKLKDKYQKDMAFYKKKK 165
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++ K +P + + K E+WK+MS +K + A
Sbjct: 5 DPGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLA 64
Query: 93 EKRKVEYEKDMKNYN 107
++ K Y+++M +YN
Sbjct: 65 KQDKARYDQEMMHYN 79
>gi|355784552|gb|EHH65403.1| hypothetical protein EGM_02155, partial [Macaca fascicularis]
Length = 116
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 12/86 (13%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ + DPN PKRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 18 PAKGGKNN-----DPNAPKRPLSGFFLFCSEFHPKMKSTNP-GISIGDVAKKLGEMWNNL 71
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PY+ K +YEKD+ +Y
Sbjct: 72 NDSEKQPYITK------KYEKDVADY 91
>gi|417404085|gb|JAA48818.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 709
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 598 RKAEDARREYEKAMKEY 614
>gi|344248925|gb|EGW05029.1| hypothetical protein I79_015964 [Cricetulus griseus]
Length = 164
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N PA + K KDPN PKRP SAF +F E+R + K +HP S+ V K GE W
Sbjct: 25 NLHPAPPKGEPKKKFKDPNAPKRPPSAF-LFCSEYRPKTKGEHP-GLSLGDVAKKLGEMW 82
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
+ + DK PY KA K K +YEKD+ Y
Sbjct: 83 NNTAAGDKQPYEKKAAKLKEQYEKDIAAY 111
>gi|45360483|ref|NP_988904.1| high mobility group box 2 [Xenopus (Silurana) tropicalis]
gi|38181929|gb|AAH61601.1| high-mobility group box 2 [Xenopus (Silurana) tropicalis]
Length = 212
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R Q K + P S+ K GE W + DK PY KA
Sbjct: 92 DPNAPKRPPSAFFLFCSEHRPQIKSESP-GLSIGDTAKKLGEMWSEQTPKDKLPYEQKAA 150
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 151 KLKEKYEKDVAAY 163
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KNDKVRYEREMKTY 78
>gi|403254821|ref|XP_003920153.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Saimiri
boliviensis boliviensis]
Length = 826
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 650 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 703
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 704 GMSKEKKEEWDRKAEDARREYEKAMKEY 731
>gi|15237042|ref|NP_192846.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266789|sp|Q9T012.1|HMG13_ARATH RecName: Full=High mobility group B protein 13; AltName:
Full=Nucleosome/chromatin assembly factor group D 13
gi|4850287|emb|CAB43043.1| 98b like protein [Arabidopsis thaliana]
gi|7267807|emb|CAB81209.1| 98b like protein [Arabidopsis thaliana]
gi|22136604|gb|AAM91621.1| putative 98b protein [Arabidopsis thaliana]
gi|332657570|gb|AEE82970.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 446
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK+P SA+ ++ E R K + NKSV V K GE+WK++SE KAPY A+
Sbjct: 242 DPLKPKQPISAYLIYANERRAALKGE---NKSVIEVAKMAGEEWKNLSEEKKAPYDQMAK 298
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
K K Y ++M+ Y R + E +++EE E
Sbjct: 299 KNKEIYLQEMEGYKRTKEEEAMSQKKEEEE 328
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+P S++F+F ++ R+ ++HP N +V A KW + E +K Y +K
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTA---HISLKWMELGEEEKQVYNSK 424
Query: 92 AEKRKVEYEKDMKNYNR 108
A + Y+K+++ YN+
Sbjct: 425 AAELMEAYKKEVEEYNK 441
>gi|45935025|gb|AAS79547.1| At4g11080 [Arabidopsis thaliana]
gi|46367464|emb|CAG25858.1| hypothetical protein [Arabidopsis thaliana]
Length = 450
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK+P SA+ ++ E R K + NKSV V K GE+WK++SE KAPY A+
Sbjct: 246 DPLKPKQPISAYLIYANERRAALKGE---NKSVIEVAKITGEEWKNLSEEQKAPYDKMAK 302
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
K K Y ++M+ Y R + E +++EE E
Sbjct: 303 KNKEIYLQEMEGYKRTKEEEAMSQKKEEEE 332
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+P S++F+F ++ R+ ++HP N +V A KW + E +K Y +K
Sbjct: 372 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTA---HITLKWMELGEEEKQVYNSK 428
Query: 92 AEKRKVEYEKDMKNYNR 108
A Y+K+++ YN+
Sbjct: 429 AAALMEAYKKEVEEYNK 445
>gi|297813579|ref|XP_002874673.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
gi|297320510|gb|EFH50932.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SA+ ++ E R K + NKSV V K GE+WK++SE KAPY A+
Sbjct: 244 DPLKPKHPISAYLIYANERRAALKGE---NKSVIEVAKMTGEEWKNLSEEQKAPYDQMAK 300
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
K+K Y ++M+ Y + E T +++EE E
Sbjct: 301 KKKEIYLQEMEGYKITKEEETMSQKKEEEE 330
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+PAS++F+F +E R+ ++HP N +V A KWK + E +K Y K
Sbjct: 370 DPNKPKKPASSYFLFCKEARKSVLEEHPGINNSTVTA---HISLKWKELGEEEKQVYNGK 426
Query: 92 AEKRKVEYEKDMKNYNR 108
A + Y+K+++ YN+
Sbjct: 427 AAELMEAYKKEVEEYNK 443
>gi|300677968|gb|ADK27291.1| high-mobility-group B1b [Gekko japonicus]
Length = 215
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|302926833|ref|XP_003054372.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
gi|256735313|gb|EEU48659.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
Length = 101
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 59/103 (57%), Gaps = 10/103 (9%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K KA +K GK KDPN PKR SA+ F E RE ++++P S VGK GE+WK+
Sbjct: 8 KRGKAVKKRGK--KDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKA 64
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEES 122
++E +APY AKA K YE + + YN Q EEEES
Sbjct: 65 LNEKQRAPYEAKAAADKKRYEDEKQAYNADQ-------EEEES 100
>gi|380792505|gb|AFE68128.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 183
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNYNRRQAEG 113
K K +YEK++ Y +AEG
Sbjct: 149 AKLKEKYEKEIAAY---RAEG 166
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|62638360|ref|XP_574279.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|109460525|ref|XP_001074365.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
Length = 209
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K EYEKD+ Y
Sbjct: 152 KEEYEKDIAAY 162
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++K HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|444518140|gb|ELV11977.1| High mobility group protein B3 [Tupaia chinensis]
Length = 198
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G + + KDPN PKR S FF+F EFR + K +P S+ V K G+ W ++
Sbjct: 80 PAKGGEE--EKGKDPNAPKRRPSVFFLFCSEFRLKIKSTNP-GISIGDVAKKLGDVWNNL 136
Query: 81 SEADKAPYVAKAEKRKVEYEKDM 103
S+++K PY+ KA K K +YEKD+
Sbjct: 137 SDSEKQPYITKAAKLK-KYEKDV 158
>gi|82952271|ref|XP_889413.1| PREDICTED: high mobility group protein B1-like isoform 2 [Mus
musculus]
gi|407263905|ref|XP_003945567.1| PREDICTED: high mobility group protein B1-like isoform 1 [Mus
musculus]
Length = 215
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
R++ K KDPN PKRP SAFF+F +R + K +HP S+ V K GE W + + DK
Sbjct: 83 RETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHP-GLSIGDVAKKRGEMWNNTAADDK 141
Query: 86 APYVAKAEKRKVEYEKDMKNY 106
PY KA K K +YEKD+ Y
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAY 162
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
K YE++MK Y
Sbjct: 65 IADKARYEREMKTY 78
>gi|366988547|ref|XP_003674040.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS 4309]
gi|342299903|emb|CCC67659.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS 4309]
Length = 101
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P +A R++ + KDPN PKR SA+ F E R+ K ++P N + VGK GEKWK++
Sbjct: 3 PKEAKRRTQRRKKDPNAPKRGLSAYMFFANENRDIVKAENP-NITFGQVGKVLGEKWKAL 61
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
+ +K PY AKA+ K YE + + Y Q EEE
Sbjct: 62 TAEEKEPYEAKAKADKKRYESEKELYMATQVHADDEEEE 100
>gi|62955511|ref|NP_001017769.1| high mobility group protein B3 [Danio rerio]
gi|62202670|gb|AAH93186.1| High-mobility group box 3b [Danio rerio]
gi|182890656|gb|AAI64996.1| Hmgb3b protein [Danio rerio]
Length = 198
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G+K K KDPN P+RP S FF+F E R K +P + + V K G W ++S+++
Sbjct: 81 GKKGRKQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNP-SLGIGDVAKKLGGMWNNLSDSE 139
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K P+++ A+K K +Y+KDM Y
Sbjct: 140 KQPFLSNADKLKDKYQKDMAFY 161
Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++ K +P + + K E+WK+MS +K + A
Sbjct: 5 DPGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLA 64
Query: 93 EKRKVEYEKDMKNYN 107
++ K Y+++M +YN
Sbjct: 65 KQDKARYDQEMMHYN 79
>gi|432895946|ref|XP_004076239.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 206
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK + K KDPN PKRP SAFF+F EFR + K + P ++ V K GE W S
Sbjct: 79 PAKGAKT--KKFKDPNAPKRPPSAFFIFCSEFRPKVKGESP-GLTIGDVAKRLGEMWNST 135
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
S DK PY KA K K +Y KD+ Y + G
Sbjct: 136 SAEDKQPYEKKAAKLKEKYGKDIAAYRAKGKTG 168
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP + + A K E+WK+MS +K +
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A + KV Y+++M +Y
Sbjct: 63 ARQDKVRYDREMMSY 77
>gi|322517988|gb|ADX06860.1| high mobility group protein B1 [Sciaenops ocellatus]
Length = 206
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PA+ G+K K KDPN PKRP SAFF+F EFR + K + P ++ V K GE W
Sbjct: 79 PARGGKK--KKYKDPNAPKRPPSAFFIFCSEFRPKVKGEAP-GLTIGEVAKRLGEMWNGT 135
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
+ DK P+ KA K K +YEK++ Y ++
Sbjct: 136 ASEDKQPFEKKAAKLKEKYEKEVAAYRQK 164
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
K+ KP+ S++ F++ RE++KK HP + + A K +WK+MS +K +
Sbjct: 2 VKEQGKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSGRWKTMSSKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A + K YE++M +Y
Sbjct: 62 LARQDKARYEREMMSY 77
>gi|358337037|dbj|GAA55457.1| structure-specific recognition protein 1 [Clonorchis sinensis]
Length = 723
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN P RP +A+ ++ E R++ K SVA V KA GE+W+++ KA Y
Sbjct: 571 KRVKDPNAPSRPPTAYIMWFNEHRDEISKSIGNPTSVAEVAKAAGERWRNIDSETKAKYQ 630
Query: 90 AKAEKRKVEYEKDMKNYNRRQAEG 113
A+ ++ K YE +M+ Y + A G
Sbjct: 631 ARVDELKKNYESEMRIYRNKIASG 654
>gi|440298682|gb|ELP91313.1| hypothetical protein EIN_153200 [Entamoeba invadens IP1]
Length = 185
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPK+P +A+ +++ E R + K+ P K V V K GE WK+M E DK PY KA+
Sbjct: 96 DPNKPKKPQTAYMLYLNEHRAEIKEKFPDMK-VTEVAKKAGENWKAMGEEDKKPYQDKAD 154
Query: 94 KRKVEYEKDMKNY 106
K K ++ +MK Y
Sbjct: 155 KAKETWKTEMKKY 167
>gi|444510285|gb|ELV09567.1| High mobility group protein B3 [Tupaia chinensis]
Length = 197
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 77 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAA 135
Query: 94 KRK 96
K K
Sbjct: 136 KLK 138
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 2 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 61
Query: 102 DMKNY 106
+MK+Y
Sbjct: 62 EMKDY 66
>gi|395858039|ref|XP_003801382.1| PREDICTED: FACT complex subunit SSRP1 [Otolemur garnettii]
Length = 710
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K +DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K +
Sbjct: 539 KKGRDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 598 RKAEDARREYEKAMKEY 614
>gi|358379174|gb|EHK16855.1| hypothetical protein TRIVIDRAFT_217092 [Trichoderma virens Gv29-8]
Length = 102
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 14 KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAG 73
K++ +K+ AK G K + KDPN PKR SA+ F E RE ++++P S VGK
Sbjct: 3 KVAASKRGAKDGGKK-RTKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLL 60
Query: 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
GE+WK++++ +APY AKA K YE + + YN Q E
Sbjct: 61 GERWKALNDKQRAPYEAKAAADKKRYEDEKQAYNADQEE 99
>gi|410057780|ref|XP_003954279.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Pan
troglodytes]
Length = 709
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + +YEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|237842875|ref|XP_002370735.1| high mobility group protein, putative [Toxoplasma gondii ME49]
gi|211968399|gb|EEB03595.1| high mobility group protein, putative [Toxoplasma gondii ME49]
Length = 644
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPY 88
+A KDPN PK+P S++ F ++ R + K P KS + VGK GE+W +S + K Y
Sbjct: 563 RAKKDPNAPKKPLSSYMFFAKDKRAEILKKQPTLKSDIGKVGKMIGEEWAKLSSSQKMTY 622
Query: 89 VAKAEKRKVEYEKDMKNYNRRQ 110
KAE+ K+ Y+++M YN+++
Sbjct: 623 QKKAEQEKIRYQREMSLYNKKK 644
>gi|397502952|ref|XP_003822100.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
gi|410056873|ref|XP_003317692.2| PREDICTED: high mobility group protein B3-like [Pan troglodytes]
Length = 221
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + G+K KDPN KRP S FF+F EF + K +P S+ + K GE W +
Sbjct: 100 PVEGGKK-----KDPNALKRPLSGFFLFCSEFHPKIKSTNP-GISIGDMAKKLGEMWINY 153
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ +K PY+ KA K +YEKD+ +Y
Sbjct: 154 SDREKQPYITKAADLKEKYEKDVADY 179
>gi|46105649|ref|XP_380561.1| hypothetical protein FG00385.1 [Gibberella zeae PH-1]
gi|110287687|sp|Q4IQX3.1|NHP6_GIBZE RecName: Full=Non-histone chromosomal protein 6
gi|408400690|gb|EKJ79767.1| hypothetical protein FPSE_00047 [Fusarium pseudograminearum CS3096]
Length = 101
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +APY
Sbjct: 16 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNEKQRAPYE 74
Query: 90 AKAEKRKVEYEKDMKNYNRRQAE 112
AKA K YE + + YN Q E
Sbjct: 75 AKAAADKKRYEDEKQAYNADQEE 97
>gi|148707462|gb|EDL39409.1| mCG8212 [Mus musculus]
Length = 145
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 10/94 (10%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
+PAK G+K KDPN PKRP S FF+F EF + K +P S+ V K GE WK+
Sbjct: 28 RPAKGGKK-----KDPNAPKRPPSGFFLFCSEFHPKIKFTNP-GISIGDVAKKLGEMWKN 81
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
+S+++ A YV KA K K EKD K + Q++G
Sbjct: 82 LSDSE-AAYVTKAAKLK---EKDEKGVSDWQSKG 111
>gi|156369656|ref|XP_001628091.1| predicted protein [Nematostella vectensis]
gi|156215058|gb|EDO36028.1| predicted protein [Nematostella vectensis]
Length = 180
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKR SA+F F+ R+ KKD+P N S A+ K GE W M++ DK Y A+
Sbjct: 89 DPNKPKRCLSAYFHFINLKRDDVKKDNP-NASGGALSKVLGEMWSKMTDDDKTQYQDMAK 147
Query: 94 KRKVEYEKDMKNY 106
K KV YE +MK +
Sbjct: 148 KDKVRYESEMKAF 160
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
NKPK SA+ F+++ RE+ +++ K S+A K EKWK+MSE +K +V KA K
Sbjct: 1 NKPKGAKSAYNFFLQDQREKLQREEGKF-SLADFSKVSAEKWKNMSEEEKETFVQKAGKD 59
Query: 96 KVEYEKDMKNYN 107
K ++++M++Y
Sbjct: 60 KERFKEEMQSYT 71
>gi|444729656|gb|ELW70065.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP AFF+F E+ + K++HP + S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNVPKRPPLAFFLFCSEYHPKIKEEHP-DLSIGDVAKKLGEMWNNTAADDKQPY- 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 145 EKAAKLKEKYEKDIAAY 161
>gi|225704132|gb|ACO07912.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K +HP S+ K G W S + +K PY KA
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNSSAAEEKKPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K +Y+KD+ +Y
Sbjct: 148 ATLKEKYDKDIASY 161
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ R ++KK HP+ + + A K E+WK MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A++ KV YE +MKNY
Sbjct: 63 AKQDKVRYEGEMKNY 77
>gi|221485710|gb|EEE23991.1| high mobility group protein, putative [Toxoplasma gondii GT1]
gi|221502922|gb|EEE28632.1| high mobility group protein, putative [Toxoplasma gondii VEG]
Length = 651
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPY 88
+A KDPN PK+P S++ F ++ R + K P KS + VGK GE+W +S + K Y
Sbjct: 570 RAKKDPNAPKKPLSSYMFFAKDKRAEILKKQPSLKSDIGKVGKMIGEEWAKLSSSQKMTY 629
Query: 89 VAKAEKRKVEYEKDMKNYNRRQ 110
KAE+ K+ Y+++M YN+++
Sbjct: 630 QKKAEQEKIRYQREMSLYNKKK 651
>gi|40352857|gb|AAH64790.1| Hmgb1 protein [Mus musculus]
Length = 215
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|297688746|ref|XP_002821837.1| PREDICTED: FACT complex subunit SSRP1 isoform 2 [Pongo abelii]
Length = 709
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + +YEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|444513275|gb|ELV10301.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP AFF+F E+R Q K +HP S+ V K GE W + + K PY
Sbjct: 86 KKFKDPNAPKRPLLAFFLFCSEYRPQIKGEHP-GLSIGDVAKKLGEMWNNTAADGKQPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 145 KKAAKLKEKYEKDIAAY 161
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
+P KP+ S+ F++ F+E++KK + + + K E+WK+MS +K + A+
Sbjct: 5 NPEKPRGKMSSNAFFVQTFQEEHKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
Query: 94 KRKVEYEKDMKNY 106
K YE++MK Y
Sbjct: 65 ADKARYEREMKTY 77
>gi|390463605|ref|XP_003733066.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YE D+ Y
Sbjct: 149 AKLKEKYEMDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|4507241|ref|NP_003137.1| FACT complex subunit SSRP1 [Homo sapiens]
gi|397512296|ref|XP_003826485.1| PREDICTED: FACT complex subunit SSRP1 [Pan paniscus]
gi|426368405|ref|XP_004051198.1| PREDICTED: FACT complex subunit SSRP1 [Gorilla gorilla gorilla]
gi|730840|sp|Q08945.1|SSRP1_HUMAN RecName: Full=FACT complex subunit SSRP1; AltName:
Full=Chromatin-specific transcription elongation factor
80 kDa subunit; AltName: Full=Facilitates chromatin
transcription complex 80 kDa subunit; Short=FACT 80 kDa
subunit; Short=FACTp80; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; Short=hSSRP1; AltName: Full=T160
gi|184242|gb|AAA58660.1| high mobility group box [Homo sapiens]
gi|13477285|gb|AAH05116.1| Structure specific recognition protein 1 [Homo sapiens]
gi|119594140|gb|EAW73734.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|119594141|gb|EAW73735.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|123993967|gb|ABM84585.1| structure specific recognition protein 1 [synthetic construct]
gi|123998313|gb|ABM86758.1| structure specific recognition protein 1 [synthetic construct]
gi|410226712|gb|JAA10575.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410226714|gb|JAA10576.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262712|gb|JAA19322.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262714|gb|JAA19323.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305268|gb|JAA31234.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305270|gb|JAA31235.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351021|gb|JAA42114.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351025|gb|JAA42116.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 709
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + +YEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|171680363|ref|XP_001905127.1| hypothetical protein [Podospora anserina S mat+]
gi|170939808|emb|CAP65034.1| unnamed protein product [Podospora anserina S mat+]
Length = 98
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K G+ KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+ +A
Sbjct: 15 KRGRGKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSDKQRA 73
Query: 87 PYVAKAEKRKVEYEKDMKNYN 107
PY AKA K YE + + YN
Sbjct: 74 PYEAKAAADKKRYEDEKQAYN 94
>gi|147903143|ref|NP_001079387.1| high mobility group box 2 [Xenopus laevis]
gi|80479234|gb|AAI08500.1| MGC52825 protein [Xenopus laevis]
Length = 211
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R Q K + P S+ K GE+W + DK P+ KA
Sbjct: 92 DPNAPKRPPSAFFLFCSEQRPQIKSETP-GLSIGDTAKKLGERWSEQTSKDKLPFEQKAA 150
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 151 KLKEKYEKDVAAY 163
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KGDKVRYEREMKTY 78
>gi|27370889|gb|AAH41262.1| MGC52825 protein [Xenopus laevis]
Length = 212
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R Q K + P S+ K GE+W + DK P+ KA
Sbjct: 92 DPNAPKRPPSAFFLFCSEQRPQIKSETP-GLSIGDTAKKLGERWSEQTSKDKLPFEQKAA 150
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 151 KLKEKYEKDVAAY 163
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KGDKVRYEREMKTY 78
>gi|332252411|ref|XP_003275348.1| PREDICTED: FACT complex subunit SSRP1 [Nomascus leucogenys]
Length = 709
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + +YEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|410351023|gb|JAA42115.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 712
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 536 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 589
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + +YEK MK Y
Sbjct: 590 GMSKEKKEEWDRKAEDARRDYEKAMKEY 617
>gi|226372550|gb|ACO51900.1| High mobility group protein B2 [Rana catesbeiana]
Length = 212
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R Q K D P S+ K GE W + DK P+ KA
Sbjct: 92 DPNAPKRPPSAFFLFCSENRPQIKNDTP-GLSIGDTAKKLGELWSEQTPKDKQPFEQKAA 150
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 151 KLKEKYEKDVAAY 163
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + S A K E+WK+MS K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVSFAEFSKKCSERWKTMSAKGKGKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KGDKVRYEREMKTY 78
>gi|149726074|ref|XP_001503141.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 215
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS ++ + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEEGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|225703866|gb|ACO07779.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K +HP S+ K G W S + +K PY KA
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNSSAAEEKKPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K +Y+KD+ +Y
Sbjct: 148 ATLKEKYDKDIASY 161
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ R ++KK HP+ + + A K E+WK MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|221221922|gb|ACM09622.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K +HP S+ K G W S + +K PY KA
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNSSAAEEKKPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K +Y+KD+ +Y
Sbjct: 148 ATLKEKYDKDIASY 161
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ R ++KK HP+ + + A K E+WK MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|221219434|gb|ACM08378.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K +HP S+ K G W S + +K PY KA
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNSSAAEEKKPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K +Y+KD+ +Y
Sbjct: 148 ATLKEKYDKDIASY 161
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ R ++KK HP+ + + A K E+WK MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|389611269|dbj|BAM19246.1| high mobility group protein D [Papilio polytes]
Length = 120
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+KPKRP SA+ +++ REQ K D+P K V + K GGE W+SM DK+ + AKA K
Sbjct: 3 DKPKRPMSAYMLWLNSAREQIKADNPGLK-VTEIAKKGGEIWRSME--DKSVWEAKAAKA 59
Query: 96 KVEYEKDMKNYN 107
K +Y KD+++YN
Sbjct: 60 KEQYTKDLESYN 71
>gi|342874398|gb|EGU76412.1| hypothetical protein FOXB_13090 [Fusarium oxysporum Fo5176]
Length = 102
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 8/96 (8%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K+ + KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +A
Sbjct: 14 KTKRGKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNEKQRA 72
Query: 87 PYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEES 122
PY AKA K YE + + YN Q EEEES
Sbjct: 73 PYEAKAAADKKRYEDEKQAYNADQ-------EEEES 101
>gi|310793467|gb|EFQ28928.1| HMG box protein [Glomerella graminicola M1.001]
Length = 103
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++++ +APY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKILGERWKALNDKQRAPYE 76
Query: 90 AKAEKRKVEYEKDMKNYNRRQAE 112
AKA K YE + + YN Q E
Sbjct: 77 AKAATDKKRYEDEKQAYNAEQEE 99
>gi|354484377|ref|XP_003504365.1| PREDICTED: high mobility group protein B2-like [Cricetulus griseus]
Length = 264
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 147 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 205
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 206 KEKYEKDIAAY 216
>gi|409079498|gb|EKM79859.1| hypothetical protein AGABI1DRAFT_57086 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 547
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFREQYKKDH--------PKNKSVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ R K H +SV A
Sbjct: 410 AQRKAGKSRKSNIKDPNAPKKPLSAYFMFLQRIRANPKLVHDIFGDETETTKQSVLAAA- 468
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
KW+SM++A++ P++A+AE+ K+EYE + Y
Sbjct: 469 ----KWRSMTDAERQPFLAQAEQEKMEYEAARRIY 499
>gi|395847762|ref|XP_003796535.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 255
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
AK G+K KDPN P RP S F +F EF + K +P S+ V K E W ++S
Sbjct: 105 AKGGKK-----KDPNAPTRPPSGFCLFCSEFHPKIKSTNP-GISIGDVAKKLSEMWSNLS 158
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNY 106
++K PY+ KA + + +YEKD+ +Y
Sbjct: 159 GSEKQPYITKAAQLREKYEKDVADY 183
>gi|367043490|ref|XP_003652125.1| hypothetical protein THITE_126111 [Thielavia terrestris NRRL 8126]
gi|346999387|gb|AEO65789.1| hypothetical protein THITE_126111 [Thielavia terrestris NRRL 8126]
Length = 103
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 61/107 (57%), Gaps = 10/107 (9%)
Query: 21 PAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
P A KSGK KDPN PKR SA+ F E RE ++++P S VGK GE
Sbjct: 2 PKAAKGKSGKVEKRRGKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGE 60
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEES 122
+WK++S+ +APY AKA K YE + + YN QA+G +EEE S
Sbjct: 61 RWKALSDKQRAPYEAKAAADKKRYEDEKQAYN-AQADG---DEEESS 103
>gi|119623033|gb|EAX02628.1| hCG1644442 [Homo sapiens]
Length = 201
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + G+K KDPN KRP S FF+F EF + K +P S+ + K GE W +
Sbjct: 80 PVEGGKK-----KDPNALKRPLSGFFLFCSEFHPKIKSTNP-GISIGDMAKKLGEMWINY 133
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ +K PY+ KA K +YEKD+ +Y
Sbjct: 134 SDREKQPYITKAADLKEKYEKDVADY 159
>gi|327296079|ref|XP_003232734.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS 118892]
gi|326465045|gb|EGD90498.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS 118892]
Length = 102
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+ + PY KA
Sbjct: 20 KDPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSDKQRVPYEEKA 78
Query: 93 EKRKVEYEKDMKNYNRRQ 110
K YE + YN RQ
Sbjct: 79 ATDKQRYEDEKAAYNSRQ 96
>gi|426192550|gb|EKV42486.1| putative HMG1 protein [Agaricus bisporus var. bisporus H97]
Length = 547
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFREQYKKDH--------PKNKSVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ R K H +SV A
Sbjct: 410 AQRKAGKSRKSNIKDPNAPKKPLSAYFMFLQRIRANPKLVHDIFGDETETTKQSVLAAA- 468
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
KW+SM++A++ P++A+AE+ K+EYE + Y
Sbjct: 469 ----KWRSMTDAERQPFLAQAEQEKMEYEAARRIY 499
>gi|395526464|ref|XP_003765383.1| PREDICTED: high mobility group protein B4 [Sarcophilus harrisii]
Length = 207
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP PKRP S+FF+F E + K D+P + SV V K GE W SE DK PY KA
Sbjct: 92 DPKAPKRPPSSFFLFSREHYTKIKSDNP-HWSVVQVAKLLGEMWSKKSEQDKQPYEEKAA 150
Query: 94 KRKVEYEKDMKNYNRRQAEGT 114
+ + +Y +++ Y +G
Sbjct: 151 RLRAKYHQELMTYRVNHGQGC 171
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
KPK S++ F+ R ++K+ P + K EKWK++S+ +K+ Y A A
Sbjct: 7 KPKVNLSSYVHFLLNCRNKHKEQQPNAYINFKEFSKRCSEKWKTISKHEKSKYEAIARLD 66
Query: 96 KVEYEKDMKNY 106
K Y+K+MKNY
Sbjct: 67 KARYQKEMKNY 77
>gi|74628491|sp|Q7S045.1|NHP6_NEUCR RecName: Full=Non-histone chromosomal protein 6
gi|336464617|gb|EGO52857.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2508]
gi|350296712|gb|EGZ77689.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2509]
Length = 103
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+ +APY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSDKQRAPYE 76
Query: 90 AKAEKRKVEYEKDMKNYN 107
AKA K YE + + YN
Sbjct: 77 AKAAADKKRYEDEKQAYN 94
>gi|449501868|ref|XP_004174468.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1
[Taeniopygia guttata]
Length = 705
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK+MS+ K +
Sbjct: 537 KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWD 595
Query: 90 AKAEKRKVEYEKDMKNYN 107
KAE + +YEK MK Y+
Sbjct: 596 RKAEDARRDYEKAMKEYS 613
>gi|449269673|gb|EMC80424.1| High mobility group protein B1 [Columba livia]
Length = 209
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEK 101
KA K K +YEK
Sbjct: 146 KKAAKLKEKYEK 157
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K+ YEK+MKNY
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|67484144|ref|XP_657292.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474548|gb|EAL51913.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
Length = 114
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN+PKRP + +F+++ E R K++HP + + K E+WK++ E +K Y KA+
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHP-DIRFTEISKVASEQWKALGEEEKKEYQTKADA 84
Query: 95 RKVEYEKDMKNYNRR 109
K +Y+KDM+ YN +
Sbjct: 85 AKEQYKKDMEKYNNK 99
>gi|444515932|gb|ELV11007.1| High mobility group protein B3 [Tupaia chinensis]
Length = 212
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN P+RP S F +F EF + K +P S+ V K E W + S+++K PY+ KA
Sbjct: 89 DPNAPERPPSGFLLFCSEFHLKIKSTNP-GISIGDVAKKLVEMWNNFSDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ NY
Sbjct: 148 KLKEKYKKDVANY 160
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYV 89
A DP KPK S + F++ RE++KK +P+ + K ++WK+MS +K+ +
Sbjct: 2 AKSDPKKPKGKVSTYAFFVQTCREEHKKKNPEVPINFTEFSKKCSKRWKTMSGKEKSKFD 61
Query: 90 AKAEKRKVEYEKDMKNY 106
A+ K+ Y+ +MK+Y
Sbjct: 62 EMAKADKIRYDWEMKDY 78
>gi|401412468|ref|XP_003885681.1| High mobility group protein 1, related [Neospora caninum Liverpool]
gi|325120101|emb|CBZ55655.1| High mobility group protein 1, related [Neospora caninum Liverpool]
Length = 98
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGE 75
V KK A+ +K + KDPN PK+P S++ F ++ R + K P KS + VGK GE
Sbjct: 6 VTKKGAEGKKK--RVKKDPNAPKKPLSSYMFFAKDKRAEILKKQPSLKSDIGKVGKMIGE 63
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
+W +S + K Y KAE+ K+ Y+++M YN+++
Sbjct: 64 EWAKLSSSQKLTYQKKAEQEKIRYQREMSLYNKKK 98
>gi|302309760|ref|XP_002999554.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049084|emb|CAR57991.1| unnamed protein product [Candida glabrata]
Length = 93
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK+ + KDPN PKR SA+ F E R+ + ++P + + +G+ GE+WK+++ DK
Sbjct: 9 RKTTRRKKDPNAPKRALSAYMFFANENRDIVRSENP-DVTFGQIGRLLGERWKALTAEDK 67
Query: 86 APYVAKAEKRKVEYEKDMKNYN 107
PY AKAE K YE + + YN
Sbjct: 68 QPYEAKAEADKKRYESEKELYN 89
>gi|444732714|gb|ELW72989.1| Enkurin [Tupaia chinensis]
Length = 362
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K +KDPN PKRP SAFF+F E+R + K +HP S+ K GE W + + +K PY
Sbjct: 87 KKSKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDAAKKLGEMWNNTAADEKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
>gi|387914026|gb|AFK10622.1| high mobility group box 3 [Callorhinchus milii]
Length = 210
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K K KDPN PKRP S FF+F + R + K P ++ V K GE W ++ +K
Sbjct: 89 KGSKKKKDPNAPKRPPSGFFLFCSDHRPKIKAGSP-GLTIGDVAKKLGELWNGCTDEEKK 147
Query: 87 PYVAKAEKRKVEYEKDMKNY 106
PY AKA K K +YEKD+ +Y
Sbjct: 148 PYNAKAAKLKEKYEKDVADY 167
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYV 89
A +DP KP+ S++ F++ RE++KK +P + + K E+WK+MS +K+ +
Sbjct: 9 AKRDPKKPRGKMSSYAYFVQTCREEHKKKNPDVPVNFSDFSKRCSERWKTMSGKEKSKFE 68
Query: 90 AKAEKRKVEYEKDMKNY 106
A+ KV Y+++MK Y
Sbjct: 69 DLAKVDKVRYDREMKTY 85
>gi|60552474|gb|AAH91486.1| SSRP1 protein, partial [Homo sapiens]
Length = 633
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + +YEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|296470699|tpg|DAA12814.1| TPA: high mobility group box 3-like [Bos taurus]
Length = 197
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP S FF+F EF + K +P S+ V K GE W ++S++ K YV K
Sbjct: 85 KDPNAPKRPPSGFFLFFSEFCSEIKSTNP-GISIGDVAKKLGEMWNNLSDSKKQLYVNKD 143
Query: 93 EKRKVEYEKDMKNYNRRQAEGTK 115
K K +YEKD+ +Y + + +GTK
Sbjct: 144 AKLK-KYEKDVADY-KGEFDGTK 164
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK SA F++ R+++KK + A K E+WK+MS +K+ + A+
Sbjct: 5 DPEKPKGKMSAHAFFVQMCRKKHKKTPKVPVNFAEFSKKCSERWKTMSGKEKSTFDEMAK 64
Query: 94 KRKVEYEKDMKNY 106
KV Y ++MK+Y
Sbjct: 65 ADKVHYNQEMKDY 77
>gi|440912073|gb|ELR61675.1| Putative high mobility group protein B3-like protein, partial [Bos
grunniens mutus]
Length = 190
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 14 KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAG 73
K+ N++ G G KDPN PKRP S FF+F EF + K +P S+ V K
Sbjct: 67 KVHYNQEMKDYGSAKGGKKKDPNAPKRPPSGFFLFFSEFCSKIKSTNP-GISIGDVAKKL 125
Query: 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
GE W ++S++ K Y+ K K K +YEKD+ +Y + + +GTK
Sbjct: 126 GEMWNNLSDSKKQLYINKDAKLK-KYEKDVADY-KGEFDGTK 165
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK SA F++ R+++KK + A K E+WK+MS +K+ + A+
Sbjct: 5 DPEKPKGKMSAHAFFVQMCRKKHKKTPKVPVNFAEFSKKCSERWKTMSGKEKSTFDEMAK 64
Query: 94 KRKVEYEKDMKNY 106
KV Y ++MK+Y
Sbjct: 65 ADKVHYNQEMKDY 77
>gi|223942599|gb|ACN25383.1| unknown [Zea mays]
gi|414881085|tpg|DAA58216.1| TPA: hypothetical protein ZEAMMB73_949955 [Zea mays]
Length = 118
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DP PK+P +AFF FME+FR+ YK++ P KS+ +GKA GEKW +M+
Sbjct: 37 DPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGKACGEKWNTMT 84
>gi|167396118|ref|XP_001741910.1| non-histone chromosomal protein [Entamoeba dispar SAW760]
gi|165893321|gb|EDR21615.1| non-histone chromosomal protein, putative [Entamoeba dispar SAW760]
Length = 111
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN+PK+P SA+F+++ E R K++HP K + K E+WK++ E +K Y AKA+
Sbjct: 23 PNRPKKPQSAYFLYLNEHRASIKEEHPDIK-FTEISKVASEQWKALGEEEKKEYQAKADA 81
Query: 95 RKVEYEKDMKNYN-RRQA 111
+ +Y+KDM+ Y ++QA
Sbjct: 82 AREQYKKDMEKYTGKKQA 99
>gi|403217000|emb|CCK71495.1| hypothetical protein KNAG_0H00800 [Kazachstania naganishii CBS
8797]
Length = 118
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R+ K ++P N + +GK GEKWK+MS DK PY AKA
Sbjct: 40 KDPNAPKRSMSAYMFFANENRDIVKSENP-NATFGQLGKLLGEKWKNMSTEDKEPYDAKA 98
Query: 93 EKRKVEYEKDMKNYN 107
K YE + + YN
Sbjct: 99 AADKKRYESEKELYN 113
>gi|367020358|ref|XP_003659464.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila ATCC
42464]
gi|347006731|gb|AEO54219.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila ATCC
42464]
Length = 101
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 21 PAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
P A +SGKA KDPN PKR SA+ F E RE ++++P S VGK GE
Sbjct: 2 PKAAKGRSGKAEKKRSKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGE 60
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
+WK++S+ +APY AKA K YE + + YN
Sbjct: 61 RWKALSDKQRAPYEAKAAADKKRYEDEKQAYN 92
>gi|392877702|gb|AFM87683.1| high mobility group box 3 [Callorhinchus milii]
Length = 203
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K K KDPN PKRP S FF+F + R + K P ++ V K GE W ++ +K
Sbjct: 82 KGSKKKKDPNAPKRPPSGFFLFCSDHRPKIKAGSP-GLTIGDVAKKLGELWNGCTDEEKK 140
Query: 87 PYVAKAEKRKVEYEKDMKNY 106
PY AKA K K +YEKD+ +Y
Sbjct: 141 PYNAKAAKLKEKYEKDVADY 160
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYV 89
A +DP KP+ S++ F++ RE++KK +P + + K E+WK+MS +K+ +
Sbjct: 2 AKRDPKKPRGKMSSYAYFVQTCREEHKKKNPDVPVNFSDFSKRCSERWKTMSGKEKSKFE 61
Query: 90 AKAEKRKVEYEKDMKNY 106
A+ KV Y+++MK Y
Sbjct: 62 DLAKVDKVRYDREMKTY 78
>gi|109076196|ref|XP_001085665.1| PREDICTED: high mobility group protein B2-like [Macaca mulatta]
Length = 321
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 207 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 265
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 266 KEKYEKDIAAY 276
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 119 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 178
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 179 KSDKARYDREMKNY 192
>gi|331220978|ref|XP_003323164.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309302154|gb|EFP78745.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 106
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 6 SKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS 65
+ S R KL + P K R K KDPN PKRP SA+ F +++RE+ K ++P + S
Sbjct: 6 TASSKRAPKLDCDGNPVKTKR--VKKEKDPNAPKRPLSAYMYFSQDWRERIKTENP-DVS 62
Query: 66 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+G+ G KWK +SE +K PY A + K +E + Y R
Sbjct: 63 FGEIGRLLGLKWKGLSEEEKKPYEDMASRDKKRHEAEKAEYER 105
>gi|326475470|gb|EGD99479.1| nucleosome binding protein [Trichophyton tonsurans CBS 112818]
Length = 102
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+ + PY KA
Sbjct: 20 KDPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSDKQRVPYEEKA 78
Query: 93 EKRKVEYEKDMKNYNRRQ 110
K YE + YN RQ
Sbjct: 79 ATDKQRYEDEKAAYNSRQ 96
>gi|90103305|gb|ABD85497.1| high mobility group box 1-like [Ictalurus punctatus]
Length = 182
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K++ P S+ V K GE W S +K PY KA
Sbjct: 70 KDPNAPKRPPSAFFIFCAEYRPKVKEETP-GLSIGDVAKKLGEMWNKTSAEEKQPYEKKA 128
Query: 93 EKRKVEYEKDMKNYNRRQAEG 113
K K +YEKD+ Y + + G
Sbjct: 129 AKLKEKYEKDIAAYRKGKVVG 149
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 53 REQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
RE++KK HP + + + K E+WK+MS +K + A K YE++MKNY
Sbjct: 4 REEHKKKHPDTSVNFSEFSKKCSERWKTMSAKEKGKFEDMARLDKARYEREMKNY 58
>gi|351707228|gb|EHB10147.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 709
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK M + K +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMPKEKKEEWD 597
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 598 HKAEDARREYEKAMKEY 614
>gi|351702997|gb|EHB05916.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 204
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR S FF+F E+R + K +HP S V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRAPSTFFLFCSEYRPKIKGEHP-GLSTGDVAKKLGEMWNNTAAGDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
+ K +YEKD+ Y
Sbjct: 149 AELKEKYEKDIAAY 162
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV--AAVGKAGGEKWKSMSEADKAPYVAK 91
DP KP+ S++ F++ RE++KK H + SV + K E+WK+MS +K +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKH-SDASVKFSEYSKKCSERWKTMSAKEKGTFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ K YE+ MK Y
Sbjct: 64 AKVDKARYERKMKTY 78
>gi|444728196|gb|ELW68660.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S V K GE W + + DK PY
Sbjct: 102 KKFKDPNAPKRPPSAFFLFCSEYRSKIKGEHP-GLSNGDVAKKLGEIWNNTAADDKQPYE 160
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 161 KKAAKLKEKYEKDIAAY 177
>gi|444730527|gb|ELW70909.1| High mobility group protein B1 [Tupaia chinensis]
Length = 238
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP AFF+F E+R + + +HP S+ K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPLAFFLFCSEYRPKIEGEHP-GLSIGDTAKKLGELWNNTAANDKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
+A K K +YEKD+ Y
Sbjct: 146 KEAAKLKEKYEKDIAAY 162
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ E++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCWEEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KVDKTRYEREMKTY 78
>gi|320580355|gb|EFW94578.1| high-mobility group non-histone chromosomal protein, putative
[Ogataea parapolymorpha DL-1]
Length = 91
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + +GK GEKWK++ EA KAPY AKAE
Sbjct: 15 DPNAPKRSLSAYMFFANEQRDIVRAENP-GIAFGQIGKLLGEKWKALDEAGKAPYEAKAE 73
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YE + Y + QA
Sbjct: 74 ADKKRYELEKSEYTKSQA 91
>gi|354468511|ref|XP_003496696.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
gi|344237248|gb|EGV93351.1| High mobility group protein B1 [Cricetulus griseus]
Length = 220
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK P+ KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPFEKKA 148
Query: 93 EKRKVEYEKDM 103
K K +YEKD+
Sbjct: 149 AKLKEKYEKDI 159
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|403295709|ref|XP_003938773.1| PREDICTED: high mobility group protein B2 [Saimiri boliviensis
boliviensis]
Length = 158
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 42 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 100
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 101 KEKYEKDIAAY 111
>gi|296227498|ref|XP_002759405.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 215
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K G+ W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGKMWSNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|344235655|gb|EGV91758.1| High mobility group protein B2 [Cricetulus griseus]
Length = 159
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 42 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 100
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 101 KEKYEKDIAAY 111
>gi|255725950|ref|XP_002547901.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133825|gb|EER33380.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 358
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
A+DP+ PKRP +A+ +F E +E+ K P + + + ++ E W+++SE D+ PY
Sbjct: 144 ARDPDLPKRPTNAYLIFCELEKERIKSGDP---NASDISRSMTEAWRNLSEEDRRPYFKL 200
Query: 92 AEKRKVEYEKDMKNYNRRQAEGTKPE 117
E+ ++ Y+++M Y++R+ EG +PE
Sbjct: 201 YEEDRIRYQREMTEYHQRK-EGGEPE 225
>gi|239606992|gb|EEQ83979.1| nucleosome binding protein [Ajellomyces dermatitidis ER-3]
Length = 105
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E +APY AKA
Sbjct: 19 KDPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNEKQRAPYEAKA 77
Query: 93 EKRKVEYEKDMKNYN-RRQAE 112
K YE + +YN RR+A+
Sbjct: 78 AADKKRYEDEKASYNARRKAQ 98
>gi|389608535|dbj|BAM17877.1| high mobility group protein D [Papilio xuthus]
Length = 121
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+KPKRP SA+ +++ REQ K D+P + V + K GGE W+SM DK+ + AKA K
Sbjct: 3 DKPKRPMSAYMLWLNSAREQIKADNPGLR-VTEIAKKGGEIWRSME--DKSVWEAKAAKA 59
Query: 96 KVEYEKDMKNYN 107
K +Y KD+++YN
Sbjct: 60 KEQYTKDLESYN 71
>gi|395850653|ref|XP_003797893.1| PREDICTED: uncharacterized protein LOC100942737 [Otolemur
garnettii]
Length = 633
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF F E+R + K +HP S+ V + GE W + +E DK P KA
Sbjct: 513 KDPNAPKRPPSAFFWFCSEYRPKIKGEHP-GLSIGDVAEKLGEMWSNTAEGDKQPEEKKA 571
Query: 93 EKRKVEYEKDM 103
K K +YEKD+
Sbjct: 572 AKLKEKYEKDI 582
>gi|354470970|ref|XP_003497717.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
Length = 215
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDVAKKLGELWNNTAAEDKQPYGKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K ++EK + Y
Sbjct: 149 AKLKEKHEKGIAAY 162
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKRKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|89475586|gb|ABD73318.1| high-mobility group box 1 [Oncorhynchus mykiss]
Length = 154
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPY 143
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|15236607|ref|NP_194111.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266376|sp|Q9SUP7.1|HMGB6_ARATH RecName: Full=High mobility group B protein 6; AltName:
Full=Nucleosome/chromatin assembly factor group D 06;
Short=Nucleosome/chromatin assembly factor group D 6;
AltName: Full=WRKY transcription factor 53;
Short=AtWRKY53; Short=WRKY DNA-binding protein 53
gi|4454049|emb|CAA23046.1| 98b like protein [Arabidopsis thaliana]
gi|7269229|emb|CAB81298.1| 98b like protein [Arabidopsis thaliana]
gi|18377799|gb|AAL67049.1| putative 98b protein [Arabidopsis thaliana]
gi|20465867|gb|AAM20038.1| putative 98b protein [Arabidopsis thaliana]
gi|22022506|gb|AAM83212.1| putative 98b protein [Arabidopsis thaliana]
gi|332659407|gb|AEE84807.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 456
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SAF V+ E R +++ NKSV V K GE+WK++S+ KAPY A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREE---NKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 94 KRKVEYEKDMKNYNRRQAE 112
K K Y + M+ Y R + E
Sbjct: 308 KNKETYLQAMEEYKRTKEE 326
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPK+PAS++F+F ++ R++ ++ P + A V KWK +SE +K Y KA
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNN-ATVTALISLKWKELSEEEKQVYNGKAA 433
Query: 94 KRKVEYEKDMKNYNRRQAEGT 114
K Y+K+++ YN++ A T
Sbjct: 434 KLMEAYKKEVEAYNKKSAATT 454
Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP+S++ ++ ++ + KK++P+ G KWKS+S DK PY E+ +VE
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEA-DFKETSNILGAKWKSLSAEDKKPY---EERYQVE 194
Query: 99 YEKDMKNY--NRRQAEGTKPEEEEESEKSMSEVNDE 132
E ++ +R+ E K E+++ +++ E+ D+
Sbjct: 195 KEAYLQVIAKEKREKEAMKLLEDDQKQRTAMELLDQ 230
>gi|444731734|gb|ELW72082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP + V K GE W + + +K PY KA
Sbjct: 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLPIGDVAKKLGEMWINTAADEKQPYEKKA 142
Query: 93 EKRKVEYEKDMKNYNRRQAEG 113
K K +YEKD+ Y QA+G
Sbjct: 143 AKLKEKYEKDIAAY---QAKG 160
>gi|54020668|ref|NP_112383.1| FACT complex subunit SSRP1 [Rattus norvegicus]
gi|83305804|sp|Q04931.2|SSRP1_RAT RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53734496|gb|AAH83588.1| Structure specific recognition protein 1 [Rattus norvegicus]
gi|149022436|gb|EDL79330.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
gi|149022437|gb|EDL79331.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 709
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601
Query: 94 KRKVEYEKDMKNY 106
+ EYEK MK Y
Sbjct: 602 DARREYEKAMKEY 614
>gi|395753165|ref|XP_003779555.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
Length = 215
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KD N PKR SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDLNAPKRTPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 VKLKEKYEKDIAAY 162
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ +E+ KK HP + + + K E+WK++S +K +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCQEEKKKKHPDASVNFSEFSKTCSERWKTISAKEKGKFEDMV 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|148701877|gb|EDL33824.1| mCG140646 [Mus musculus]
Length = 207
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP V V K GE W + + DK PY KA
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLCVGDVAKKLGELWNNTAGDDKQPYEKKA 149
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 AKLKEKYEKDIAAY 163
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 130
+ K YE++MK Y P +EE++K + N
Sbjct: 65 KADKARYEREMKTYI--------PPPQEETKKKFKDPN 94
>gi|334186863|ref|NP_001190816.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|332659408|gb|AEE84808.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 450
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SAF V+ E R +++ NKSV V K GE+WK++S+ KAPY A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREE---NKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 94 KRKVEYEKDMKNYNRRQAE 112
K K Y + M+ Y R + E
Sbjct: 308 KNKETYLQAMEEYKRTKEE 326
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPK+PAS++F+F ++ R++ ++ P + A V KWK +SE +K Y KA
Sbjct: 369 DPNKPKKPASSYFLFSKDERKKLTEERPGTNN-ATVTALISLKWKELSEEEKQVYNGKAA 427
Query: 94 KRKVEYEKDMKNYNRRQAEGT 114
K Y+K+++ YN++ A T
Sbjct: 428 KLMEAYKKEVEAYNKKSAATT 448
>gi|32335|emb|CAA78938.1| HMG2B [Homo sapiens]
Length = 186
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 70 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 128
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 129 KEKYEKDIAAY 139
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 53 REQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 1 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 55
>gi|327260386|ref|XP_003215015.1| PREDICTED: FACT complex subunit SSRP1-like [Anolis carolinensis]
Length = 705
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 19 KKPAKAGRKS-GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+KP K R+S GK KDPN PKRP SA+ +++ R++ + + P SV V K GE W
Sbjct: 527 RKPRK--RQSEGKKGKDPNAPKRPLSAYMLWLNANRDKIRSESP-GMSVTDVSKKAGELW 583
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
K+MS+ K + KAE K +YEK MK YN
Sbjct: 584 KAMSKEKKEEWDRKAEDAKRDYEKAMKEYN 613
>gi|291413747|ref|XP_002723128.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 117 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 175
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 176 KEKYEKDIAAY 186
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K + A
Sbjct: 29 DPNKPRGKMSSYAFFVQMCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKPKFEDMA 88
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 89 KSDKARYDREMKNY 102
>gi|29290594|emb|CAD83017.1| bM168F16.1 (novel protein similar to high-mobility group box 1
(Hmgb1)) [Mus musculus]
gi|148699130|gb|EDL31077.1| mCG49535 [Mus musculus]
Length = 208
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SAFF+F E+ + K +HP S+ V K GE W + + DK P KA
Sbjct: 90 KDPNAPKRSPSAFFLFCSEYCHKIKGEHP-GLSIGVVAKKLGEMWINTAVYDKQPCEKKA 148
Query: 93 EKRKVEYEKDM 103
K K +YEKD+
Sbjct: 149 TKLKEKYEKDI 159
>gi|444728198|gb|ELW68662.1| High mobility group protein B1 [Tupaia chinensis]
Length = 132
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S V K GE W + + DK PY KA
Sbjct: 16 KDPNAPKRPPSAFFLFCSEYRSKIKGEHP-GLSNGDVAKKLGEIWNNTAADDKQPYEKKA 74
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 75 AKLKEKYEKDIAAY 88
>gi|164422576|ref|XP_957906.2| hypothetical protein NCU09995 [Neurospora crassa OR74A]
gi|157069727|gb|EAA28670.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 95
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+ +APY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSDKQRAPYE 76
Query: 90 AKAEKRKVEYEKDMKNYN 107
AKA K YE + + YN
Sbjct: 77 AKAAADKKRYEDEKQAYN 94
>gi|336272321|ref|XP_003350917.1| hypothetical protein SMAC_04223 [Sordaria macrospora k-hell]
gi|380090684|emb|CCC04854.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 103
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P + VGK GE+WK++S+ +APY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVTFGQVGKILGERWKALSDKQRAPYE 76
Query: 90 AKAEKRKVEYEKDMKNYN 107
AKA K YE + + YN
Sbjct: 77 AKAAADKKRYEDEKQAYN 94
>gi|156843619|ref|XP_001644876.1| hypothetical protein Kpol_1065p34 [Vanderwaltozyma polyspora DSM
70294]
gi|156115528|gb|EDO17018.1| hypothetical protein Kpol_1065p34 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ K ++P + S VG+ GEKWK+M++ DK P+ AKAE
Sbjct: 17 DPNAPKRALSAYMFFANETRDIVKAENP-DVSFGQVGRILGEKWKAMTDEDKQPFDAKAE 75
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YE + + YN +A
Sbjct: 76 ADKKRYESEKELYNATRA 93
>gi|37779034|gb|AAP20177.1| high mobility group protein [Pagrus major]
Length = 200
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F +FR + K D+P S+ K GE W
Sbjct: 76 NYIPPKGHKK--KRFKDPNAPKRPPSAFFLFCADFRPKVKGDYP-GLSIGDTAKKLGEMW 132
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S S +K PY KA K K +Y+KD+ Y
Sbjct: 133 NSSSAEEKQPYEKKAAKLKEKYDKDIVAY 161
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + A K E+WK+MS +K +
Sbjct: 3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKRCSERWKTMSPKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++MKNY
Sbjct: 63 AKLDKVRYEREMKNY 77
>gi|444724258|gb|ELW64868.1| High mobility group protein B1 [Tupaia chinensis]
Length = 140
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
K PN KRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY K
Sbjct: 28 KGPNAAKRPPSAFFLFCSEYRPKIKGEHP-GLSIGGVAKKLGEVWNNTAADDKQPYEKKP 86
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 87 AKLKEKYEKDIAAY 100
>gi|194666188|ref|XP_875720.3| PREDICTED: high mobility group protein B2 [Bos taurus]
gi|297473608|ref|XP_002686711.1| PREDICTED: high mobility group protein B2 [Bos taurus]
gi|296488702|tpg|DAA30815.1| TPA: high-mobility group box 2-like [Bos taurus]
Length = 283
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 167 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 225
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 226 KEKYEKDIAAY 236
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 49 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
+ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 94 INTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 152
>gi|156837652|ref|XP_001642846.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156113421|gb|EDO14988.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P ++ +++ + KDPN PKR SA+ F E R+ + ++P + S VG+ GEKWK++
Sbjct: 4 PRESKKRTTRRKKDPNAPKRALSAYMFFANETRDIVRAENP-DVSFGQVGRILGEKWKAL 62
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYN 107
+ DK P+ AKAE K YE + + YN
Sbjct: 63 TPEDKVPFEAKAEADKKRYESEKELYN 89
>gi|344237192|gb|EGV93295.1| High mobility group protein B1 [Cricetulus griseus]
Length = 203
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK PY KA
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDVAKKLGELWNNTAAEDKQPYGKKA 136
Query: 93 EKRKVEYEKDMKNY 106
K K ++EK + Y
Sbjct: 137 AKLKEKHEKGIAAY 150
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK HP + + + K E+WK+MS +K + A+ K YE+
Sbjct: 2 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKRKFEDMAKADKARYER 61
Query: 102 DMKNY 106
+MK Y
Sbjct: 62 EMKTY 66
>gi|154284354|ref|XP_001542972.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|150406613|gb|EDN02154.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|240273630|gb|EER37150.1| nucleosome binding protein [Ajellomyces capsulatus H143]
gi|325087527|gb|EGC40837.1| nucleosome binding protein [Ajellomyces capsulatus H88]
Length = 102
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +APY AKA
Sbjct: 20 KDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKVLGERWKALNEKQRAPYEAKA 78
Query: 93 EKRKVEYEKDMKNYN 107
K YE + +YN
Sbjct: 79 AADKKRYEDEKASYN 93
>gi|431918327|gb|ELK17554.1| High mobility group protein B2 [Pteropus alecto]
Length = 209
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|426220609|ref|XP_004004507.1| PREDICTED: high mobility group protein B2 [Ovis aries]
Length = 205
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|73993609|ref|XP_543194.2| PREDICTED: high mobility group protein B2 isoform 1 [Canis lupus
familiaris]
gi|301753755|ref|XP_002912713.1| PREDICTED: high mobility group protein B2-like [Ailuropoda
melanoleuca]
gi|410956554|ref|XP_003984907.1| PREDICTED: high mobility group protein B2 [Felis catus]
gi|281338293|gb|EFB13877.1| hypothetical protein PANDA_000462 [Ailuropoda melanoleuca]
Length = 210
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|11321591|ref|NP_002120.1| high mobility group protein B2 [Homo sapiens]
gi|83035095|ref|NP_001032705.1| high mobility group protein B2 [Bos taurus]
gi|194688133|ref|NP_001124160.1| high mobility group protein B2 [Homo sapiens]
gi|194688135|ref|NP_001124161.1| high mobility group protein B2 [Homo sapiens]
gi|332820789|ref|XP_517538.3| PREDICTED: high mobility group protein B2 isoform 2 [Pan
troglodytes]
gi|332820791|ref|XP_003310651.1| PREDICTED: high mobility group protein B2 isoform 1 [Pan
troglodytes]
gi|397505874|ref|XP_003823467.1| PREDICTED: high mobility group protein B2 isoform 1 [Pan paniscus]
gi|397505876|ref|XP_003823468.1| PREDICTED: high mobility group protein B2 isoform 2 [Pan paniscus]
gi|397505878|ref|XP_003823469.1| PREDICTED: high mobility group protein B2 isoform 3 [Pan paniscus]
gi|410038949|ref|XP_003950520.1| PREDICTED: high mobility group protein B2 [Pan troglodytes]
gi|123374|sp|P26583.2|HMGB2_HUMAN RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|109940084|sp|P40673.3|HMGB2_BOVIN RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|32333|emb|CAA44395.1| HMG-2 [Homo sapiens]
gi|184236|gb|AAA58659.1| high mobility group 2 protein [Homo sapiens]
gi|12654471|gb|AAH01063.1| High-mobility group box 2 [Homo sapiens]
gi|54696426|gb|AAV38585.1| high-mobility group box 2 [Homo sapiens]
gi|61358840|gb|AAX41628.1| high-mobility group box 2 [synthetic construct]
gi|71679685|gb|AAI00020.1| HMGB2 protein [Homo sapiens]
gi|81674324|gb|AAI09756.1| High-mobility group box 2 [Bos taurus]
gi|119625163|gb|EAX04758.1| high-mobility group box 2, isoform CRA_a [Homo sapiens]
gi|119625164|gb|EAX04759.1| high-mobility group box 2, isoform CRA_a [Homo sapiens]
gi|123982946|gb|ABM83214.1| high-mobility group box 2 [synthetic construct]
gi|123997623|gb|ABM86413.1| high-mobility group box 2 [synthetic construct]
gi|189053183|dbj|BAG34805.1| unnamed protein product [Homo sapiens]
gi|208966462|dbj|BAG73245.1| high-mobility group box 2 [synthetic construct]
gi|296484972|tpg|DAA27087.1| TPA: high mobility group protein B2 [Bos taurus]
gi|380785663|gb|AFE64707.1| high mobility group protein B2 [Macaca mulatta]
gi|383417929|gb|AFH32178.1| high mobility group protein B2 [Macaca mulatta]
gi|383417931|gb|AFH32179.1| high mobility group protein B2 [Macaca mulatta]
gi|383417933|gb|AFH32180.1| high mobility group protein B2 [Macaca mulatta]
gi|384941858|gb|AFI34534.1| high mobility group protein B2 [Macaca mulatta]
gi|384946750|gb|AFI36980.1| high mobility group protein B2 [Macaca mulatta]
gi|410212048|gb|JAA03243.1| high-mobility group box 2 [Pan troglodytes]
gi|410212050|gb|JAA03244.1| high-mobility group box 2 [Pan troglodytes]
gi|410253758|gb|JAA14846.1| high-mobility group box 2 [Pan troglodytes]
gi|410253760|gb|JAA14847.1| high-mobility group box 2 [Pan troglodytes]
gi|410304294|gb|JAA30747.1| high-mobility group box 2 [Pan troglodytes]
gi|410304296|gb|JAA30748.1| high-mobility group box 2 [Pan troglodytes]
gi|410337391|gb|JAA37642.1| high-mobility group box 2 [Pan troglodytes]
gi|410337393|gb|JAA37643.1| high-mobility group box 2 [Pan troglodytes]
gi|410337395|gb|JAA37644.1| high mobility group box 2 [Pan troglodytes]
gi|440908504|gb|ELR58513.1| High mobility group protein B2 [Bos grunniens mutus]
gi|738688|prf||2001363A high mobility group protein 2
Length = 209
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|351701092|gb|EHB04011.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 215
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 94 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 152
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 153 KEKYEKDIAAY 163
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|296195168|ref|XP_002745261.1| PREDICTED: high mobility group protein B2-like isoform 2
[Callithrix jacchus]
Length = 205
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|291385922|ref|XP_002709517.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
gi|344288245|ref|XP_003415861.1| PREDICTED: high mobility group protein B2-like [Loxodonta africana]
Length = 210
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|332217748|ref|XP_003258025.1| PREDICTED: high mobility group protein B2 [Nomascus leucogenys]
gi|426346003|ref|XP_004040680.1| PREDICTED: high mobility group protein B2 isoform 1 [Gorilla
gorilla gorilla]
gi|426346005|ref|XP_004040681.1| PREDICTED: high mobility group protein B2 isoform 2 [Gorilla
gorilla gorilla]
gi|426346007|ref|XP_004040682.1| PREDICTED: high mobility group protein B2 isoform 3 [Gorilla
gorilla gorilla]
gi|54696428|gb|AAV38586.1| high-mobility group box 2 [Homo sapiens]
Length = 208
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|355565174|gb|EHH21663.1| hypothetical protein EGK_04785, partial [Macaca mulatta]
Length = 201
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
R++ K KDPN PKRP SAFF+F E+R + K +HP S+ VGK GE W + DK
Sbjct: 83 RETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVGKKPGEMWNDTAADDK 141
Query: 86 APY 88
PY
Sbjct: 142 HPY 144
>gi|355691926|gb|EHH27111.1| hypothetical protein EGK_17228 [Macaca mulatta]
Length = 196
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D N PKRP S FF+F EF + K +P S+ + K GE WK++++++K PY+ KA
Sbjct: 76 DSNAPKRPPSGFFLFSSEFCPKMKSTNP-GISIGDMVKKLGEMWKNLNDSEKQPYITKAA 134
Query: 94 KRKVEYEKDM 103
K K +YEKD+
Sbjct: 135 KLKEKYEKDV 144
>gi|291413749|ref|XP_002723129.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 219
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV--GKAGGEKWKSMSEADKAPYVAK 91
DPNKP+ S++ F++ RE++K+ HP + SV V K E+WK+MS + + +
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKRKHP-DSSVNFVEFSKKCSERWKTMSAKENSKFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ K Y+++MKNY
Sbjct: 64 AKSDKARYDREMKNY 78
>gi|444726553|gb|ELW67082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 111
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN +R SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 39 KDPNASQRSPSAFFLFSSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAAGDKQPYGKKA 97
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 98 AKLKEKYEKDIAAY 111
>gi|395840000|ref|XP_003792858.1| PREDICTED: high mobility group protein B2 [Otolemur garnettii]
Length = 209
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KNDKARYDREMKNY 78
>gi|426251515|ref|XP_004019467.1| PREDICTED: high mobility group protein B2-like [Ovis aries]
Length = 209
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|426230076|ref|XP_004009107.1| PREDICTED: high mobility group protein B2-like [Ovis aries]
Length = 209
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|417397133|gb|JAA45600.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 208
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + + K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFSEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|441618163|ref|XP_003271355.2| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 206
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PK P S FF+F EF + K P S+ V K GE W ++++++K PY+ KA
Sbjct: 95 DPNAPKMPQSGFFLFCSEFCLKIKSTKP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 153
Query: 94 KRKVEYEKDMKNY 106
K K YEKD+ +Y
Sbjct: 154 KLK--YEKDVADY 164
>gi|19114226|ref|NP_593314.1| High-mobility group non-histone chromatin protein (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74627097|sp|P87057.1|NHP6_SCHPO RecName: Full=Non-histone chromosomal protein 6
gi|2058376|emb|CAB08172.1| High-mobility group non-histone chromatin protein (predicted)
[Schizosaccharomyces pombe]
Length = 108
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
AK+ RK KDPN PKR SAF F E RE+ K D+P + + +G G++WK ++
Sbjct: 5 AKSSRK-----KDPNTPKRNMSAFMFFSIENREKMKTDNP-DATFGQLGSLLGKRWKELT 58
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
++ PY KA + K YE++ K Y+ + A G K
Sbjct: 59 STEREPYEEKARQDKERYERERKEYDTKLANGEK 92
>gi|291413997|ref|XP_002723251.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQMCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|291410693|ref|XP_002721624.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 215
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRTPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|355687725|gb|EHH26309.1| hypothetical protein EGK_16239 [Macaca mulatta]
Length = 209
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP++ + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPESSVNFAEFSKKCSERWKTMSAKEKSKFEGMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV Y+++MKNY
Sbjct: 65 KSDKVRYDREMKNY 78
>gi|170097113|ref|XP_001879776.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645179|gb|EDR09427.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 114
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87
S K KDPNKPKR SA+ F +++R++ K ++P + VGK G KWK + E +K P
Sbjct: 21 SRKGKKDPNKPKRALSAYMFFSQDWRDRIKAENP-DAGFGEVGKLLGAKWKELDEEEKKP 79
Query: 88 YVAKAEKRKVEYEKDMKNY--NRRQAEGTKPEEEE 120
YV +A K K E+ Y N++ A G + E+EE
Sbjct: 80 YVEQASKDKTRAEEAKAAYDSNKKSASGDEEEDEE 114
>gi|444732758|gb|ELW73033.1| High mobility group protein B2 [Tupaia chinensis]
Length = 234
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 127 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 185
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 186 KEKYEKDIAAY 196
>gi|186701221|gb|ACC91248.1| high mobility group HMG1/2 family protein [Arabidopsis halleri]
Length = 456
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SAF V+ E R ++D +KSV V K GE+WK++S+ KAPY A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALRED---SKSVVEVAKITGEEWKNLSDKKKAPYEEVAK 307
Query: 94 KRKVEYEKDMKNYNRRQAE 112
K K Y + M+ Y R + E
Sbjct: 308 KNKETYLQAMEEYKRTKEE 326
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+PAS++F+F ++ R++ ++ P N +V A+ KWK + E +K Y K
Sbjct: 375 DPNKPKKPASSYFLFSKDERKRLIEERPGTNNSTVTALISV---KWKELGEEEKQVYNKK 431
Query: 92 AEKRKVEYEKDMKNYNRRQAEGT 114
A K Y+K+++ YN++ A T
Sbjct: 432 AAKLMEAYKKEVEAYNKKSAATT 454
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP+S++ ++ ++ + KK +P+ G KWKS+S DK PY EK +VE
Sbjct: 139 KRPSSSYVLWCKDQWAEVKKQNPEA-DFKETSNILGTKWKSLSAEDKKPY---EEKYQVE 194
Query: 99 YEKDMKNY--NRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEED 143
E ++ +R+ E K E+++ +K+ E+ D+ + E+D
Sbjct: 195 KEAYLQVIAKQKREKEAMKLLEDDQKQKTAMELLDQYLNFVQEAEQD 241
>gi|149060359|gb|EDM11073.1| rCG63620 [Rattus norvegicus]
Length = 198
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 81 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 139
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 140 KEKYEKDIAAY 150
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y++
Sbjct: 2 SSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDR 61
Query: 102 DMKNY 106
+MKNY
Sbjct: 62 EMKNY 66
>gi|146163497|ref|XP_001011529.2| HMG box family protein [Tetrahymena thermophila]
gi|146146042|gb|EAR91284.2| HMG box family protein [Tetrahymena thermophila SB210]
Length = 2400
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 9 DTRNAKLSVNKKP--AKAGRKSG----KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPK 62
DT L+ + P K G KSG KDP+ PK+P++A+ ++ + +E++ + +P
Sbjct: 2173 DTHTFPLASHDVPLKKKTGNKSGVPKNSEIKDPDMPKKPSTAYILYFKNRKEKFLQQYP- 2231
Query: 63 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEE 118
N + + K ++W +S + P++ AEK K++Y + MK Y + P E
Sbjct: 2232 NFGITEITKLIAKEWSELSREKQIPFLRDAEKAKLDYIERMKEYASKHPGIKVPGE 2287
>gi|225556517|gb|EEH04805.1| non-histone chromosomal protein 6 [Ajellomyces capsulatus G186AR]
Length = 102
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +APY AKA
Sbjct: 20 KDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKVLGERWKALNEKQRAPYEAKA 78
Query: 93 EKRKVEYEKDMKNYN 107
K YE + +YN
Sbjct: 79 AADKKRYEDEKASYN 93
>gi|358391632|gb|EHK41036.1| hypothetical protein TRIATDRAFT_259074 [Trichoderma atroviride IMI
206040]
Length = 101
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++++ +APY
Sbjct: 17 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNDKQRAPYE 75
Query: 90 AKAEKRKVEYEKDMKNYN 107
AKA K YE + + YN
Sbjct: 76 AKAAADKKRYEDEKQAYN 93
>gi|440911425|gb|ELR61099.1| High mobility group protein B3, partial [Bos grunniens mutus]
Length = 192
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PA+ G+K KDP PKR S +F EF + K HP S+ V K GE W ++
Sbjct: 82 PARGGKK-----KDPKAPKRLPSGCLLFCSEFHPKIKSTHP-GISIRDVAKKLGEMWNNL 135
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRR-QAEGTK 115
S+++K PY+ KA K K +YEKD+ ++ R + +GTK
Sbjct: 136 SDSEKQPYINKAAKLK-KYEKDVADHKSRGKFDGTK 170
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDH---PKNKSVAAVGKAGGEKWKSMSEADKAP 87
A DP KPK A+ F++ RE++KK + P N A K E+WK+MS +K+
Sbjct: 4 AISDPKKPKGKMCAYAFFVQMCREEHKKKNSEVPVN--FAEFSKKCSERWKTMSRKEKSK 61
Query: 88 YVAKAEKRKVEYEKDMKNY 106
+ A+ K+ Y+++MK+Y
Sbjct: 62 FDEMAKVYKMHYDQEMKDY 80
>gi|444323521|ref|XP_004182401.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS 6284]
gi|387515448|emb|CCH62882.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS 6284]
Length = 94
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + ++S + KDPN PKR SA+ F E R+ + ++P + + VGK GE+WK++
Sbjct: 4 PRETKKRSTRRKKDPNAPKRALSAYMFFANETRDIVRSENP-DVTFGQVGKILGERWKAL 62
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111
S +K PY KAE K YE + + YN +A
Sbjct: 63 SAEEKVPYETKAEADKKRYESEKELYNATRA 93
>gi|478813|pir||S29857 nonhistone chromosomal protein HMG-1 - human
gi|184251|gb|AAA64970.1| HMG-1 [Homo sapiens]
Length = 216
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPTGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|119584724|gb|EAW64320.1| hCG26831 [Homo sapiens]
Length = 212
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPTGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|67475910|ref|XP_653586.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56470556|gb|EAL48200.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449703217|gb|EMD43706.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica KU27]
Length = 111
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN+PKRP + +F+++ E R K++HP K V + K E+WK++ E +K Y KA+
Sbjct: 23 PNRPKRPPTPYFLYLNEHRASIKEEHPDAK-VTEIAKIASEQWKALGEEEKKEYQTKADA 81
Query: 95 RKVEYEKDMKNYN-RRQA 111
K +Y+KD++ Y+ ++QA
Sbjct: 82 AKEQYKKDIEKYDGKKQA 99
>gi|291395415|ref|XP_002714100.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + + +H S+ K GE W S D+ PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIRSEH-SGLSIGDTAKKLGEMWSEQSAKDEQPYEQKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPN+P+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNEPRGKMSSYAFFVQTCREEHKKKHPDSSINFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKACYDREMKNY 78
>gi|407263446|ref|XP_003084790.3| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 424
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E+ + K +HP S+ V K GE W + + DK PY KA
Sbjct: 99 KDPNAPKRPPLAFFLFYSEYYPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 157
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 158 AKLKEKYEKDIAAY 171
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
P KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A+
Sbjct: 14 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 73
Query: 94 KRKVEYEKDMKNY 106
K YE+ MK Y
Sbjct: 74 ADKAHYERKMKTY 86
>gi|26342222|dbj|BAC34773.1| unnamed protein product [Mus musculus]
Length = 215
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|353351504|emb|CBX36444.1| high-mobility-group-1 protein [Plecoglossus altivelis]
Length = 204
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K + P ++ V K GE W DK PY KA
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKVKGETP-GPTIGDVAKKLGEMWNGTCAEDKQPYEKKA 147
Query: 93 EKRKVEYEKDMKNYNRRQAEGT 114
K K +YEKD+ Y + G
Sbjct: 148 AKLKEKYEKDIAAYRAKGKVGV 169
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 3 KDPTKPRGKTSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++MKNY
Sbjct: 63 AKLDKVRYEREMKNY 77
>gi|384246550|gb|EIE20040.1| hypothetical protein COCSUDRAFT_83556 [Coccomyxa subellipsoidea
C-169]
Length = 140
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 24 AGRKSGKAAKDP-NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
A R + AK P + P+RP SA+ FM EFRE++K DHP+ V+ VG A GE W+S++
Sbjct: 5 APRVKKRRAKKPKDAPRRPKSAYMFFMAEFREKWKVDHPEVNRVSDVGVAAGEAWRSLTP 64
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNY 106
KA Y ++ K Y ++ Y
Sbjct: 65 EQKAVYEEQSVGSKATYAAEIAEY 88
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVA 67
S + KP K ++S ++P + +RP SA+F F+ FR+ +K+D+P A
Sbjct: 90 SAHPKPPKKRQRS----REPGQLRRPTSAYFFFLNTFRDAFKEDNPGTGPCA 137
>gi|148668679|gb|EDL00993.1| mCG49874 [Mus musculus]
Length = 140
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKRP SAFF+F E R + K DHP S+ K G W S DK PY KA K
Sbjct: 41 PNAPKRPPSAFFLFCSENRPEIKIDHP-GLSIGDTSKKLGVMWSEQSAKDKQPYEQKAAK 99
Query: 95 RKVEYEKDMKNY 106
K +YEKD+ +
Sbjct: 100 PKEKYEKDIAAF 111
>gi|444708344|gb|ELW49421.1| High mobility group protein B1 [Tupaia chinensis]
Length = 302
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F ++R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSDYRPKIK-EHP-GLSIGDVAKKLGEMWNNTATDDKQPYEKKA 147
Query: 93 EKRKVEYEKDMKNYNRRQAEG 113
K K +YEKD+ Y QA+G
Sbjct: 148 AKLKEKYEKDIAAY---QAKG 165
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ +E++KK+HP + + + K E+WK MS K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCQEEHKKEHPGVSVNFSEFSKKCSERWKIMSAKKKGKFEDTA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE+++K Y
Sbjct: 65 KADKVHYEREIKTY 78
>gi|225706046|gb|ACO08869.1| High mobility group-T protein [Osmerus mordax]
Length = 204
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K + P ++ V K GE W DK PY KA
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKVKGETP-GLTIGDVAKKLGEMWNGTCAEDKQPYEKKA 147
Query: 93 EKRKVEYEKDMKNYNRRQAEGT 114
K K +YEKD+ Y + G
Sbjct: 148 AKLKEKYEKDIAAYRAKGKVGV 169
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++MKNY
Sbjct: 63 AKLDKVRYEREMKNY 77
>gi|296418046|ref|XP_002838655.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634611|emb|CAZ82846.1| unnamed protein product [Tuber melanosporum]
Length = 103
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
+PA+A +K KDPN PKR SA+ F E RE + D+P + VGK GE+WK+
Sbjct: 9 QPAQAAQKK----KDPNAPKRGLSAYMFFANEQRENVRNDNP-GIAFGQVGKVLGERWKA 63
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYN 107
+SE + PY AKA K YE + YN
Sbjct: 64 LSEKQRQPYEAKAAADKKRYEDEKAAYN 91
>gi|351712970|gb|EHB15889.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 677
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDP+ P++P SA+ +++ RE K +HP S+A + K GE WK MS+ K +
Sbjct: 538 KKGKDPSVPEQPLSAYVLWLNASREMIKSEHP-GISIANLSKKAGEIWKGMSKTMKEEWG 596
Query: 90 AKAEKRKVEYEKDMKNYNR 108
KAE ++EYEK +K Y R
Sbjct: 597 HKAEDVRLEYEKAVKEYER 615
>gi|224080027|ref|XP_002305996.1| high mobility group family [Populus trichocarpa]
gi|222848960|gb|EEE86507.1| high mobility group family [Populus trichocarpa]
Length = 165
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 48/71 (67%)
Query: 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102
+AFF F+E+FR+++++ +P KS+ VGKA GEKWK+M+ +K Y A +++ E+++
Sbjct: 82 TAFFYFLEDFRKEFQEQNPDVKSMREVGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRA 141
Query: 103 MKNYNRRQAEG 113
Y +R+ G
Sbjct: 142 TSEYIKRKESG 152
>gi|146218567|gb|AAI40014.1| High-mobility group box 1 [synthetic construct]
gi|146218571|gb|AAI40019.1| High-mobility group box 1 [synthetic construct]
gi|146327050|gb|AAI41845.1| High-mobility group box 1 [Homo sapiens]
Length = 215
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK Y KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQHYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444722008|gb|ELW62714.1| High mobility group protein B1 [Tupaia chinensis]
Length = 224
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF F E+R + K +HP S+ V K GE W + + K PY KA
Sbjct: 90 KDPNAPKRPPSAFFFFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWSNTAADAKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+P KP+ S++ F++ RE++KK HP + + + K E+WK++S +K + A
Sbjct: 5 NPTKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTVSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|403286915|ref|XP_003934714.1| PREDICTED: high mobility group protein B1-like isoform 1 [Saimiri
boliviensis boliviensis]
gi|403286917|ref|XP_003934715.1| PREDICTED: high mobility group protein B1-like isoform 2 [Saimiri
boliviensis boliviensis]
gi|403286919|ref|XP_003934716.1| PREDICTED: high mobility group protein B1-like isoform 3 [Saimiri
boliviensis boliviensis]
gi|403286921|ref|XP_003934717.1| PREDICTED: high mobility group protein B1-like isoform 4 [Saimiri
boliviensis boliviensis]
Length = 206
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E+R + K ++P S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIKGEYP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S+ F++ RE++KK HP + + + K E+WK+MS +K A
Sbjct: 5 DPKKLRGKMSSCAFFVQTCREEHKKQHPDSSVNFSEFSKKCSERWKTMSAKEKGKVEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|291415825|ref|XP_002724150.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEHSVKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
PNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 94 KRKVEYEKDMKNY 106
K Y+++MKNY
Sbjct: 66 SDKARYDREMKNY 78
>gi|392878936|gb|AFM88300.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M +K PY +A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEE 120
K K +Y+KD+ Y + TKP+ E
Sbjct: 166 KLKEKYKKDVAAYRAK----TKPDSVE 188
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY 88
K A+DP KP+ +++ +F++ RE++KK HP K S K E+WK+MS +K+ +
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMSAKEKSKF 75
Query: 89 VAKAEKRKVEYEKDMKNY 106
+++ K YE +MK+Y
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|344253440|gb|EGW09544.1| High mobility group protein B1 [Cricetulus griseus]
Length = 169
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KD N PKRP SAFF+F E+ + K +HP S+ V K GEKW + + DK PY
Sbjct: 86 KKFKDSNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSLGDVAKKLGEKWNNTAAGDKQPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 145 KKAAKLKEKYEKDIVAY 161
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ E++KK HP + + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCWEEHKKKHPDASVNFSELLKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KAGKAHYEREMKTY 78
>gi|260806967|ref|XP_002598355.1| hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae]
gi|229283627|gb|EEN54367.1| hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae]
Length = 223
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
V K A+ GR+ K KDPN PKR SAFF++ + R + + HP + V + K G +
Sbjct: 79 VPPKGAEGGRRKRKK-KDPNAPKRAMSAFFMYCADARPKVRAAHP-DFQVGEIAKILGRQ 136
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
WK +S++DKA Y KA+ K Y+K++ Y R
Sbjct: 137 WKEISDSDKAKYEKKAQTEKARYQKELAEYKR 168
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAK 91
KD NKPK SA+ F++E R++++K +P + V K E+WK+M++ +K +
Sbjct: 4 KDKNKPKGKMSAYACFVQECRKEHEKKYPDKQVVFTEFSKKCAERWKTMNDGEKKRFQDL 63
Query: 92 AEKRKVEYEKDMKNY 106
AE K YE++M Y
Sbjct: 64 AETDKRRYEREMAKY 78
>gi|392876654|gb|AFM87159.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M +K PY +A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY 88
K A+DP KP+ +++ +F++ RE++KK HP K S K E WK+MS +K+ +
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSEGWKTMSAKEKSKF 75
Query: 89 VAKAEKRKVEYEKDMKNY 106
+++ K YE +MK+Y
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|392879586|gb|AFM88625.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M +K PY +A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY 88
K A+DP KP+ +++ +F++ RE++KK HP K S K E+WK+MS +K+ +
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMSAKEKSKF 75
Query: 89 VAKAEKRKVEYEKDMKNY 106
+++ K YE +MK+Y
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|387914724|gb|AFK10971.1| high mobility group box 1 [Callorhinchus milii]
Length = 226
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M +K PY +A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY 88
K A+DP KP+ ++ +F++ RE++KK HP K S K E+WK+MS +K+ +
Sbjct: 16 KMARDPKKPRGRLTSHALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMSAKEKSKF 75
Query: 89 VAKAEKRKVEYEKDMKNY 106
+++ K YE +MK+Y
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|238880555|gb|EEQ44193.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 310
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
A+DP+ PKRP +A+ +F E +E+ K+D P + + + K+ E WK++SE + PY
Sbjct: 148 ARDPDLPKRPTNAYLIFCEMEKERIKQDDP---NASDLSKSMTEAWKNLSEERRRPYYKL 204
Query: 92 AEKRKVEYEKDMKNYNRR 109
E ++ Y+++M YN++
Sbjct: 205 YEDDRIRYQREMAEYNQK 222
>gi|303282319|ref|XP_003060451.1| high mobility group family B protein [Micromonas pusilla CCMP1545]
gi|226457922|gb|EEH55220.1| high mobility group family B protein [Micromonas pusilla CCMP1545]
Length = 922
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKRP SA+ +F + R + K++P+ K+ + A G KWK++ DKA Y AKA
Sbjct: 805 PNAPKRPLSAYILFSGDARAKVVKENPEMKATEIIA-AIGAKWKAIGAKDKAKYEAKATA 863
Query: 95 RKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
K +Y+++ K+Y +A GT+ E EE +E
Sbjct: 864 AKEKYDEEKKSYEASKAAGTESESEEPAE 892
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
RPA+A+ +F + R ++HP+ S+ GK G KW+++ E DKA Y KA K Y
Sbjct: 591 RPANAYMLFANDMRAAVAEEHPE-MSMVERGKVLGAKWRAIGEKDKARYETKAAAEKERY 649
Query: 100 EKDMKNY 106
++MK+Y
Sbjct: 650 AEEMKHY 656
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP +A+ +F + R + +K HP+ S + +W++ SE +KA Y AK +
Sbjct: 697 DPNAPKRPPNAYILFSNDARAKLQKQHPE-MSPKEIMSTLAAQWQNASEKEKAKYEAKTK 755
Query: 94 KRKVEYEKDMKNY 106
+ K Y+ Y
Sbjct: 756 EAKEAYDVASAEY 768
>gi|413923117|gb|AFW63049.1| putative phototropic-resoponsive NPH3 family protein [Zea mays]
Length = 425
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
+KPKRP SAFFVFM EFR++Y+ HP NKSVAAV
Sbjct: 287 SKPKRPTSAFFVFMSEFRQEYQVQHPGNKSVAAV 320
>gi|392884154|gb|AFM90909.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M +K PY +A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY 88
K A+DP KP+ +++ +F++ RE++KK HP K S K E+W++MS +K+ +
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWETMSAKEKSKF 75
Query: 89 VAKAEKRKVEYEKDMKNY 106
+++ K YE +MK+Y
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|62087576|dbj|BAD92235.1| high-mobility group box 1 variant [Homo sapiens]
Length = 176
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 89 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 147
Query: 90 AKAEKRKVEYEK 101
KA K K +YEK
Sbjct: 148 KKAAKLKEKYEK 159
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 7 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 66
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 67 KADKARYEREMKTY 80
>gi|444313359|ref|XP_004177337.1| hypothetical protein TBLA_0A00160 [Tetrapisispora blattae CBS 6284]
gi|387510376|emb|CCH57818.1| hypothetical protein TBLA_0A00160 [Tetrapisispora blattae CBS 6284]
Length = 400
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+DPN PKRP +A+ +F EE +E+ K+ A V KA E WK++ E ++ PY
Sbjct: 169 RDPNLPKRPTNAYLLFCEETKEKIKQSGS-----ADVTKALAEAWKNLDEQERKPYYKLY 223
Query: 93 EKRKVEYEKDMKNYNRRQAEG 113
+ ++ Y+++M+ YN + +G
Sbjct: 224 SEDRLRYQREMQIYNTKYGKG 244
>gi|356510782|ref|XP_003524113.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 165
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 25 GRKSGKAAK--DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
RK KA + D K K+P S FF F+E+FR++++ +P KS +GKA +KWK+M+
Sbjct: 52 SRKKLKAKQKFDAMKQKKPLSGFFYFLEDFRKEFQVRNPDVKSKRDIGKASAKKWKTMTY 111
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111
+KA Y A K+ E++ M +N++
Sbjct: 112 EEKAQYFDIATKKHDEFDSAMAEFNKKMI 140
>gi|392876858|gb|AFM87261.1| high mobility group protein [Callorhinchus milii]
gi|392878442|gb|AFM88053.1| high mobility group protein [Callorhinchus milii]
gi|392880194|gb|AFM88929.1| high mobility group protein [Callorhinchus milii]
gi|392881188|gb|AFM89426.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M +K PY +A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY 88
K A+DP KP+ +++ +F++ RE++KK HP K S K E+WK+MS +K+ +
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMSAKEKSKF 75
Query: 89 VAKAEKRKVEYEKDMKNY 106
+++ K YE +MK+Y
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|429860623|gb|ELA35353.1| nucleosome binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 103
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E RE ++++P S VGK GE+WK++++ +APY AKA
Sbjct: 21 KDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKILGERWKALNDKQRAPYEAKA 79
Query: 93 EKRKVEYEKDMKNYNRRQAE 112
K YE + + YN Q E
Sbjct: 80 AADKKRYEDEKQAYNADQEE 99
>gi|426392256|ref|XP_004062472.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Gorilla gorilla gorilla]
Length = 198
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDP+ PKRP SAFF+F E+ + K +HP S+ V K GE W + DK PY KA
Sbjct: 77 KDPSAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVVKKLGEMWNDTAADDKQPYEKKA 135
Query: 93 EKRKVEYEKDMKNYNRRQAEGTKPE 117
K K +YEKD+ Y QA+G KPE
Sbjct: 136 AKLKEKYEKDIAAY---QAKG-KPE 156
>gi|47227840|emb|CAG09003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 199
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F EFR + K ++P ++ K GE W
Sbjct: 76 NYVPPKGHKK--KRFKDPNAPKRPPSAFFLFCAEFRPKVKSENP-GLTIGDTAKKLGEMW 132
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S + DK PY KA K K +Y+KD+ Y
Sbjct: 133 NSKTAEDKQPYEKKAAKLKEKYDKDIVAY 161
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP + + A K E+WK+MS +K +
Sbjct: 3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSPKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|309265997|ref|XP_003086707.1| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 433
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F + + K +HP + S+ V K GE W + + DK PY KA
Sbjct: 89 KDPNAPKRPPSAFFLFYSVYYPKIKGEHP-DLSIGDVAKKLGEMWNNAAADDKQPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDIAAY 161
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ FM+ R+++KK HP + + + K E+WK+MS +K + A
Sbjct: 3 DPKKPRGKMSSYAFFMQTCRKEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 62
Query: 93 EKRKVEYEKDMKNY 106
+ K Y++ +K Y
Sbjct: 63 KADKARYKRKIKTY 76
>gi|313224350|emb|CBY20139.1| unnamed protein product [Oikopleura dioica]
Length = 91
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
G+A KDPN PKRP +AFF+F + R KK P+ V+ V K G WK + K Y
Sbjct: 2 GRAKKDPNAPKRPQTAFFLFAADNRADAKKCLPEGSRVSEVAKKLGVMWKEVDAKTKEKY 61
Query: 89 VAKAEKRKVEYEKDMKNYNRRQA 111
++AE+ K +Y ++M+ Y QA
Sbjct: 62 QSQAEENKAKYAEEMEAYRNSQA 84
>gi|302851253|ref|XP_002957151.1| hypothetical protein VOLCADRAFT_77427 [Volvox carteri f.
nagariensis]
gi|300257558|gb|EFJ41805.1| hypothetical protein VOLCADRAFT_77427 [Volvox carteri f.
nagariensis]
Length = 94
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PK+P A+ F ++ RE+ K ++P SV +GK GE WK +SE DK Y+
Sbjct: 16 KKVKDPNAPKKPLGAYMWFCKDMRERVKAENP-GMSVTDIGKRLGELWKEVSEEDKKKYL 74
Query: 90 AKAEKRKVEYEKDMKNYNR 108
+AE K Y K+ YN+
Sbjct: 75 KQAEDDKERYNKEAAAYNK 93
>gi|148696675|gb|EDL28622.1| mCG11166 [Mus musculus]
Length = 160
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 43 NAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 101
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 102 KEKYEKDIAAY 112
>gi|427787117|gb|JAA59010.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 208
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K AKDPN PKRP SAFF F + R ++++P + SV V K G +W + + KA Y
Sbjct: 88 KRAKDPNAPKRPLSAFFWFCNDERPNVRQENP-DSSVGEVAKELGRRWNEVGDDVKAKYE 146
Query: 90 AKAEKRKVEYEKDMKNYNRRQAEGTKP 116
A K K YEK++K Y ++ +G P
Sbjct: 147 GLAAKDKARYEKELKAYKGKKPKGASP 173
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
+KP+ SA+ F++ RE++KK HP +N A K E+WK+MS+ +K + A+K
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPNENVVFAEFSKKCAERWKTMSDGEKKRFHQMADK 64
Query: 95 RKVEYEKDMKNY 106
K ++ +M +Y
Sbjct: 65 DKKRFDTEMADY 76
>gi|195025405|ref|XP_001986052.1| GH21151 [Drosophila grimshawi]
gi|193902052|gb|EDW00919.1| GH21151 [Drosophila grimshawi]
Length = 744
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KD NKPKRP +AF +++ + REQ K+D+P K V + K GGE WK + DK+ + A
Sbjct: 555 KDSNKPKRPTTAFMLWLNDTREQIKRDNPGIK-VTEIAKKGGEMWKELK--DKSKWDEAA 611
Query: 93 EKRKVEYEKDMKNY 106
K K Y+ +M+NY
Sbjct: 612 SKDKQRYQDEMRNY 625
>gi|221045048|dbj|BAH14201.1| unnamed protein product [Homo sapiens]
Length = 174
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEK 101
KA K K +YEK
Sbjct: 146 KKAAKLKEKYEK 157
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|46394418|gb|AAS91553.1| AmphiHMG1/2 [Branchiostoma belcheri tsingtauense]
Length = 222
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
V K A+ GR+ K KDPN PKR SAFF++ + R + + HP + V + K G++
Sbjct: 78 VPPKGAEGGRRKRKK-KDPNAPKRAMSAFFMYCADARPKVRAAHP-DFQVGDIAKILGKQ 135
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
WK +S++DKA Y KA+ K Y+K++ Y R
Sbjct: 136 WKEISDSDKAKYEKKAQTEKARYQKELAEYKR 167
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAK 91
KD NKPK SA+ F++E R +++K +P + V + +WK+M++ +K + A
Sbjct: 3 KDKNKPKGKMSAYACFVQECRREHEKKYPNKQVVFTEFSQKCASRWKTMNDDEKKRFQAL 62
Query: 92 AEKRKVEYEKDMKNY 106
AE K YE+DM Y
Sbjct: 63 AEADKRRYEQDMAKY 77
>gi|261194046|ref|XP_002623428.1| nucleosome binding protein [Ajellomyces dermatitidis SLH14081]
gi|239588442|gb|EEQ71085.1| nucleosome binding protein [Ajellomyces dermatitidis SLH14081]
gi|327354542|gb|EGE83399.1| nonhistone chromosomal protein 6A [Ajellomyces dermatitidis ATCC
18188]
Length = 101
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E +APY AKA
Sbjct: 19 KDPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNEKQRAPYEAKA 77
Query: 93 EKRKVEYEKDMKNYN 107
K YE + +YN
Sbjct: 78 AADKKRYEDEKASYN 92
>gi|302411796|ref|XP_003003731.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|261357636|gb|EEY20064.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|346978438|gb|EGY21890.1| nucleosome binding protein [Verticillium dahliae VdLs.17]
Length = 102
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+K+ +A KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +
Sbjct: 13 KKAKRAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNEKQR 71
Query: 86 APYVAKAEKRKVEYEKDMKNYN 107
PY AKA K YE + YN
Sbjct: 72 GPYEAKAVADKKRYEDEKAAYN 93
>gi|149628522|ref|XP_001521757.1| PREDICTED: high mobility group protein B2-like, partial
[Ornithorhynchus anatinus]
Length = 106
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 40 DPNAPKRPPSAFFLFCSEQRPKIKSEHP-GLSIGDTAKKLGELWSEQSAKDKLPYEQKAA 98
Query: 94 KRKVEYEK 101
K K +YEK
Sbjct: 99 KLKEKYEK 106
>gi|224058355|ref|XP_002299486.1| high mobility group family [Populus trichocarpa]
gi|222846744|gb|EEE84291.1| high mobility group family [Populus trichocarpa]
Length = 498
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SAFF+F E R + NK+V V K GE+WK+M+E K PY A+
Sbjct: 295 DPLKPKHPLSAFFLFSNERRAALLAE---NKNVLEVAKIAGEEWKNMTEKQKRPYEEIAK 351
Query: 94 KRKVEYEKDMKNY 106
K K +Y ++M+ Y
Sbjct: 352 KNKEKYTQEMEAY 364
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPK+PAS+F +F +E R+ +HP S + + KWK + + +K + KA
Sbjct: 420 DPNKPKKPASSFLLFSKETRKSLVHEHPGINS-STLTAMISVKWKELIQEEKQIWNCKAA 478
Query: 94 KRKVEYEKDMKNYNRRQA 111
+ Y+K+++ Y++ A
Sbjct: 479 EAMEAYKKELEEYHKSVA 496
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N+ KRP + ++ ++ + KK++P + + G KWK+++ +K PY K +
Sbjct: 178 NEIKRPCPPYSLWCKDQWNEVKKENP-DAEFKDISHILGAKWKTITAEEKKPYEEKYQVE 236
Query: 96 KVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDE 132
K Y K M +R++E K EEE+ +K+ E+ ++
Sbjct: 237 KEAYLKLMTK-EKRESEAMKLLEEEQKQKTAMELLEQ 272
>gi|74153177|dbj|BAB27638.3| unnamed protein product [Mus musculus]
Length = 191
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|332025495|gb|EGI65658.1| High mobility group protein DSP1 [Acromyrmex echinatior]
Length = 204
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W S
Sbjct: 105 PERPTRRGTKRYRDKDAPKRALSAFFYFCQELRSKMRELHPE-MGVGDIAKELGKLWMST 163
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEE 118
K+ Y+A AE+ + YE+++ YN+R + PEE
Sbjct: 164 DLQTKSKYMAIAEEDRARYEREIIAYNKR-VKNYDPEE 200
>gi|307192730|gb|EFN75838.1| High mobility group protein DSP1 [Harpegnathos saltator]
Length = 205
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W S
Sbjct: 106 PERPTRRGTKRYRDKDAPKRALSAFFYFCQELRSKMRELHPE-MGVGEIAKELGKLWMST 164
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEE 118
K+ Y+A AE+ + YE+++ YN+R + PEE
Sbjct: 165 DLQTKSKYMAIAEEDRARYEREIIAYNKR-VKNYDPEE 201
>gi|205780950|sp|B2RPK0.1|HGB1A_HUMAN RecName: Full=Putative high mobility group protein B1-like 1;
AltName: Full=High mobility group protein B1 pseudogene
1; AltName: Full=Putative high mobility group protein
1-like 1; Short=HMG-1L1
gi|187950665|gb|AAI37483.1| High-mobility group box 1-like 1 [Homo sapiens]
gi|187953577|gb|AAI37484.1| High-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK P KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPGEKKA 148
Query: 93 EKRKVEYEKDMKNYNRRQAEGTKPE 117
K K +YEKD+ Y QA+G KPE
Sbjct: 149 AKLKEKYEKDIAAY---QAKG-KPE 169
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK H + + + E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE+ MK Y
Sbjct: 65 KADKTHYERQMKTY 78
>gi|392352276|ref|XP_003751165.1| PREDICTED: high mobility group protein B1 [Rattus norvegicus]
Length = 187
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEK 101
KA K K +YEK
Sbjct: 146 KKAAKLKEKYEK 157
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|412992276|emb|CCO19989.1| nucleosome binding protein [Bathycoccus prasinos]
Length = 94
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+F FM + R + K +P K V VGK GE W++MS+++K PY KA+
Sbjct: 20 DPNAPKRNLSAYFFFMNDQRAKVVKANPDMK-VTEVGKKLGELWRAMSDSEKVPYNKKAD 78
Query: 94 KRKVEYEK 101
KV YEK
Sbjct: 79 ADKVRYEK 86
>gi|295671102|ref|XP_002796098.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284231|gb|EEH39797.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 103
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E +APY AKA
Sbjct: 21 KDPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNEKQRAPYEAKA 79
Query: 93 EKRKVEYEKDMKNYN 107
K YE + +YN
Sbjct: 80 AADKKRYEDEKASYN 94
>gi|444726214|gb|ELW66754.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAF +F E+R + K +HP + V K GE W + + K PY
Sbjct: 36 KKVKDPNAPKRPPSAFLLFCSEYRPKIKGEHP-GLFIGDVAKKLGEMWNNTAAGGKQPYE 94
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 95 KKAAKLKEKYEKDIAAY 111
>gi|116206850|ref|XP_001229234.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183315|gb|EAQ90783.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 96
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 21 PAKAGRKSGKA------AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGG 74
P A +SGKA KDPN PKR SA+ F E R+ ++++P S VGK G
Sbjct: 2 PKAAKSRSGKAEKKTRQKKDPNAPKRGLSAYMFFANEQRDNVREENP-GVSFGQVGKILG 60
Query: 75 EKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
E+WK++S+ +APY AKA K YE + + YN
Sbjct: 61 ERWKALSDKQRAPYEAKAAADKKRYEDEKQAYN 93
>gi|225681708|gb|EEH19992.1| nucleosome binding protein [Paracoccidioides brasiliensis Pb03]
Length = 103
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E +APY AKA
Sbjct: 21 KDPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNEKQRAPYEAKA 79
Query: 93 EKRKVEYEKDMKNYN 107
K YE + +YN
Sbjct: 80 AADKKRYEDEKASYN 94
>gi|326437020|gb|EGD82590.1| hypothetical protein PTSG_03243 [Salpingoeca sp. ATCC 50818]
Length = 210
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G + K KDPN PK+P SA+FVF E R+ + +P+++ V+ K GE+W+ M+E
Sbjct: 125 GGRRRKKKKDPNAPKKPKSAYFVFAETRRDALRAQYPEDR-VSDTAKRTGEEWRGMTEEQ 183
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K P+ KA++ K EY++ + Y
Sbjct: 184 KRPFQLKAQELKQEYDQAVAEY 205
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKP+ + + F +E R + HP N SV V K G +W+ +++ K PY A
Sbjct: 45 DPNKPRGALTPYMCFNKEVRPAIMQQHP-NASVTEVAKLIGAQWRQLTDEQKKPYNDMAR 103
Query: 94 KRKVEYEKDMKNY 106
+ Y++ MKNY
Sbjct: 104 TDRERYKEAMKNY 116
>gi|281350894|gb|EFB26478.1| hypothetical protein PANDA_002732 [Ailuropoda melanoleuca]
Length = 157
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEK 101
KA K K +YEK
Sbjct: 146 KKAAKLKEKYEK 157
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|442755991|gb|JAA70155.1| Putative dorsal switch protein 1 [Ixodes ricinus]
Length = 207
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF F + R +++ P + SV V K G +W + + K+ Y
Sbjct: 88 KRTKDPNAPKRPLSAFFWFCNDERPNVRQESP-DASVGEVAKELGRRWNDVGDDTKSKYE 146
Query: 90 AKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
A K K YEK++K Y ++ +G P +E
Sbjct: 147 GLAAKDKARYEKELKAYKNKKTKGASPPKE 176
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
+KP+ SA+ F++ RE++KK HP +N A K E+WK+MS+ +K + A+K
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPTENVVFAEFSKKCAERWKTMSDGEKKRFHQMADK 64
Query: 95 RKVEYEKDMKNY 106
K ++ +M +Y
Sbjct: 65 DKKRFDSEMADY 76
>gi|296224352|ref|XP_002758030.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390474708|ref|XP_003734829.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 215
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR S FF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRTPSVFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|213405987|ref|XP_002173765.1| mismatch-binding protein cmb1 [Schizosaccharomyces japonicus
yFS275]
gi|212001812|gb|EEB07472.1| mismatch-binding protein cmb1 [Schizosaccharomyces japonicus
yFS275]
Length = 316
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 73/126 (57%), Gaps = 6/126 (4%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFRE--QYKKDH--PKNKSVAAVGKAGGEKW 77
AK +K+ K KDP++PK+P S+F F ++ R+ ++K+ P S+ K GE W
Sbjct: 141 AKGIKKNSKPIKDPSEPKKPLSSFLYFTQKLRQDPEFKQKLMGPAVYSITEFSKKAGEVW 200
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEE 137
KS+S+ KAP++ A R+ +Y+++ + + R+ G + + EK + ++++E +
Sbjct: 201 KSLSDDIKAPFIEDAATRRAQYKEEYEKW--RKDTGIDQIDLRDIEKKIKKIHEELEKPT 258
Query: 138 GSGEED 143
+GE++
Sbjct: 259 KNGEKN 264
>gi|448516014|ref|XP_003867470.1| Nhp10 protein [Candida orthopsilosis Co 90-125]
gi|380351809|emb|CCG22032.1| Nhp10 protein [Candida orthopsilosis]
Length = 335
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Query: 33 KDPNKPKRPASAFFVFMEE----FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
+DP+ PKRP +A+ +F E+ R+Q ++D P+N + + KA E WK++SE D+ P+
Sbjct: 161 RDPDLPKRPTNAYLLFCEQEKERLRQQQQED-PENNT-RDLSKAMTEAWKALSEEDRKPF 218
Query: 89 VAKAEKRKVEYEKDMKNYNRR 109
E+ +V Y+K+M YN++
Sbjct: 219 YKLYEEDRVRYQKEMAEYNQK 239
>gi|328350132|emb|CCA36532.1| Hepatocyte growth factor-regulated tyrosine kinase substrate
[Komagataella pastoris CBS 7435]
Length = 725
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Query: 9 DTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA 68
+ NAK ++ ++ K GRK KDPN PKR SA+ F E R+ + ++P +
Sbjct: 624 NNTNAKGTMAERRTKTGRKK----KDPNAPKRSLSAYMFFANEQRDIVRSENPGIQ-FGE 678
Query: 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
+GK GEKWK++ KAPY +KAE+ K YE + Y ++Q E
Sbjct: 679 IGKLLGEKWKALDAEGKAPYESKAEEDKKRYELEKAEYFKKQHE 722
>gi|294463267|gb|ADE77169.1| unknown [Picea sitchensis]
Length = 482
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
KS + KDP+KPK P +AFF F E R ++ N +V + K GE+WK+M++ ++A
Sbjct: 242 KSKRKEKDPSKPKHPVTAFFAFTNERRAALLEE---NHNVLQIAKILGEEWKNMTKEERA 298
Query: 87 PYVAKAEKRKVEYEKDMKNYNRRQAE 112
PY A + K +Y +M+ Y +++AE
Sbjct: 299 PYEQIAAEAKEKYMGEMELYKQKKAE 324
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 56/95 (58%), Gaps = 8/95 (8%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPN+PK+P ++F +F +E R++ ++ P N ++ A+ KWK + A+K +V +
Sbjct: 377 DPNRPKKPPTSFLLFSKETRKKLVQERPGVNNTTINALISL---KWKDLGTAEKQKWVDE 433
Query: 92 AEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSM 126
A V+Y+K+++ YN+ K ++EE++ S
Sbjct: 434 AAGAMVQYKKEVEEYNKLH---VKEQQEEQTHISF 465
>gi|380476672|emb|CCF44585.1| non-histone chromosomal protein 6 [Colletotrichum higginsianum]
Length = 96
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E + PY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKILGERWKALNEKQRQPYE 76
Query: 90 AKAEKRKVEYEKDMKNYN 107
AKA K YE + + YN
Sbjct: 77 AKAATDKKRYEDEKQAYN 94
>gi|6680229|ref|NP_032278.1| high mobility group protein B2 [Mus musculus]
gi|1708259|sp|P30681.3|HMGB2_MOUSE RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|609169|emb|CAA86727.1| high mobility group 2 protein [Mus musculus]
gi|12834643|dbj|BAB22988.1| unnamed protein product [Mus musculus]
gi|12842629|dbj|BAB25672.1| unnamed protein product [Mus musculus]
gi|12849395|dbj|BAB28323.1| unnamed protein product [Mus musculus]
gi|52789313|gb|AAH83108.1| High mobility group box 2 [Mus musculus]
gi|55777186|gb|AAH46759.1| High mobility group box 2 [Mus musculus]
gi|74179666|dbj|BAE22481.1| unnamed protein product [Mus musculus]
gi|74179668|dbj|BAE22482.1| unnamed protein product [Mus musculus]
gi|74226660|dbj|BAE26982.1| unnamed protein product [Mus musculus]
Length = 210
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|11527222|gb|AAG36939.1|AF267733_1 high mobility group protein B2 [Mus musculus]
gi|12805183|gb|AAH02050.1| High mobility group box 2 [Mus musculus]
gi|74150328|dbj|BAE32214.1| unnamed protein product [Mus musculus]
gi|148672860|gb|EDL04807.1| mCG4647 [Mus musculus]
Length = 210
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|448079731|ref|XP_004194450.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
gi|359375872|emb|CCE86454.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDP+ PKR SA+ F E R+ + ++P S VGK GEKWK+MS DK PY KA
Sbjct: 14 KDPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKAMSSEDKTPYETKA 72
Query: 93 EKRKVEYEKDMKNYNRRQA 111
E K YEK+ Y ++ +
Sbjct: 73 EADKKRYEKEKAEYAKKNS 91
>gi|119491564|ref|XP_001263303.1| nucleosome binding protein (Nhp6a), putative [Neosartorya fischeri
NRRL 181]
gi|119411463|gb|EAW21406.1| nucleosome binding protein (Nhp6a), putative [Neosartorya fischeri
NRRL 181]
Length = 104
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R++ ++++P S VGK GE+WK++S+ D+ PY KA
Sbjct: 20 KDPNAPKRGLSAYMFFANENRDKVREENP-GISFGQVGKMLGERWKALSDTDRRPYEEKA 78
Query: 93 EKRKVEYEKDMKNYNRRQAEGTKPEEEEES 122
K YE + +YN + E+EEES
Sbjct: 79 AADKKRYEDEKASYN-----AAQDEDEEES 103
>gi|453083241|gb|EMF11287.1| HMG_box-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 109
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K K+ TR +K + K GK KDPN PKR SA+ F + R++ ++D+P K
Sbjct: 3 KEKTTTRGSKKAAGKA------DGGKRKKDPNMPKRGLSAYMFFANDTRDKVREDNPGIK 56
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
VGK GE+WK+++E KAPY AKA K YE++ Y
Sbjct: 57 -FGEVGKLLGERWKALNEKQKAPYEAKAAADKKRYEEEKAAYT 98
>gi|328769557|gb|EGF79601.1| hypothetical protein BATDEDRAFT_89692 [Batrachochytrium
dendrobatidis JAM81]
Length = 99
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K AK G K+ KDP+ PKRP SAF +F +E R + ++++P + S +GK G W+
Sbjct: 11 KVAKRGDDKKKSRKDPDAPKRPLSAFMIFSKENRPRIREENP-DASFGDLGKLLGAAWRE 69
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNY 106
+++ DK Y KA++ K YE++M Y
Sbjct: 70 LNDKDKQVYTDKADEDKGRYEREMSTY 96
>gi|126331239|ref|XP_001365344.1| PREDICTED: high mobility group protein B2-like [Monodelphis
domestica]
Length = 207
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY K K
Sbjct: 93 NAPKRPPSAFFLFCAEHRPKIKSEHP-GLSIGDTAKKLGELWSEQSAKDKLPYEQKVAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSPVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>gi|241122588|ref|XP_002403591.1| DNA-binding protein, putative [Ixodes scapularis]
gi|215493481|gb|EEC03122.1| DNA-binding protein, putative [Ixodes scapularis]
Length = 207
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF F + R +++ P + SV V K G +W + + K+ Y
Sbjct: 88 KRTKDPNAPKRPLSAFFWFCNDERPNVRQESP-DASVGEVAKELGRRWNDVGDDTKSKYE 146
Query: 90 AKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
A K K YEK++K Y ++ +G P +E
Sbjct: 147 GLAAKDKARYEKELKAYKNKKTKGASPPKE 176
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
+KP+ SA+ F++ RE++KK HP +N A K E+WK+MSE +K + A+K
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPSENVVFAEFSKKCAERWKTMSEGEKKRFHQMADK 64
Query: 95 RKVEYEKDMKNY 106
K ++ +M +Y
Sbjct: 65 DKKRFDSEMADY 76
>gi|118488333|gb|ABK95985.1| unknown [Populus trichocarpa]
Length = 232
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SAFF+F E R + NK+V V K GE+WK+M+E K PY A+
Sbjct: 29 DPLKPKHPLSAFFLFSNERRAALLAE---NKNVLEVAKIAGEEWKNMTEKQKRPYEEIAK 85
Query: 94 KRKVEYEKDMKNY 106
K K +Y ++M+ Y
Sbjct: 86 KNKEKYTQEMEAY 98
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPK+PAS+F +F +E R+ +HP S + + KWK + + +K + KA
Sbjct: 154 DPNKPKKPASSFLLFSKETRKSLVHEHPGINS-STLTAMISVKWKELIQEEKQIWNCKAA 212
Query: 94 KRKVEYEKDMKNYNRRQA 111
+ Y+K+++ Y++ A
Sbjct: 213 EAMEAYKKELEEYHKSVA 230
>gi|307105669|gb|EFN53917.1| hypothetical protein CHLNCDRAFT_136125 [Chlorella variabilis]
Length = 101
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ F + R + KK P + S+ VGKA G WK +S+ +K PY KA+
Sbjct: 27 DPNAPKRPLSAYMYFASDKRVEMKKSDP-SLSLGEVGKATGAAWKELSDKEKEPYQKKAD 85
Query: 94 KRKVEYEKDMKNYNRR 109
K K YEK+ Y ++
Sbjct: 86 KDKARYEKEKAAYEKK 101
>gi|195123163|ref|XP_002006078.1| GI18750 [Drosophila mojavensis]
gi|193911146|gb|EDW10013.1| GI18750 [Drosophila mojavensis]
Length = 734
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D NKPKRP +AF +++ E REQ K+D+P K V + K GGE WK + DK+ + A
Sbjct: 557 DSNKPKRPTTAFMLWLSETREQIKRDNPGIK-VTEIAKKGGEMWKELK--DKSKWEELAS 613
Query: 94 KRKVEYEKDMKNY 106
K K Y+ M+NY
Sbjct: 614 KDKQRYQDAMRNY 626
>gi|367006853|ref|XP_003688157.1| hypothetical protein TPHA_0M01480 [Tetrapisispora phaffii CBS 4417]
gi|357526464|emb|CCE65723.1| hypothetical protein TPHA_0M01480 [Tetrapisispora phaffii CBS 4417]
Length = 93
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + +++ + KDPN PKR SA+ F E R+ + ++P + S +G+ GEKW+++
Sbjct: 4 PREIKKRTHRRKKDPNAPKRAMSAYMFFANETRDIVRAENP-DVSFGQIGRLLGEKWRAL 62
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYN 107
++ DK P+ AKA+ K YE + + YN
Sbjct: 63 TDEDKGPFEAKAQADKKRYESEKELYN 89
>gi|348525338|ref|XP_003450179.1| PREDICTED: high mobility group-T protein-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F +FR + K ++P S+ K GE W
Sbjct: 76 NYVPPKGQKK--KRFKDPNAPKRPPSAFFLFCADFRPKIKSEYP-GLSIGDTAKKLGEMW 132
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S S +K PY KA K K +Y+KD+ Y
Sbjct: 133 NSSSAEEKQPYEKKAAKLKEKYDKDIVAY 161
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K +
Sbjct: 2 VKDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSPKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A++ K+ YE++MKNY
Sbjct: 62 MAKQDKLRYEREMKNY 77
>gi|20138433|sp|Q9UGV6.1|HMGLX_HUMAN RecName: Full=Putative high mobility group protein 1-like 10;
Short=HMG-1L10
Length = 211
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SAFF+F +R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRTPSAFFLFCSAYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S+ F + RE +KK HP + +++ K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSHAFFGQTCREAHKKKHPDASVNLSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKAHYEREMKTY 78
>gi|74185387|dbj|BAE30167.1| unnamed protein product [Mus musculus]
Length = 181
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|344243983|gb|EGW00087.1| High mobility group protein B4 [Cricetulus griseus]
Length = 106
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ + +DP+ P++P S+F +F + Q K D+P N SV V KA G+ W S D
Sbjct: 6 GKRRKRRKRDPHAPRQPPSSFLLFSLDHYAQLKHDNP-NWSVVQVAKATGKMWSMTSNVD 64
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
K PY KA + +Y +D++NY R+Q +
Sbjct: 65 KQPYEQKAALLRAKYFEDVENY-RKQFQ 91
>gi|224078343|ref|XP_002197989.1| PREDICTED: transcription factor Sox-18A-like [Taeniopygia guttata]
Length = 417
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
AGR GKAA+D ++ +RP +AF V+ ++ R++ + +P + A + K G+ WK++S +
Sbjct: 87 AGRPEGKAAED-SRIRRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGQSWKALSAS 144
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRR 109
DK P+V +AE+ ++++ +D NY R
Sbjct: 145 DKRPFVEEAERLRIQHLQDHPNYKYR 170
>gi|351705938|gb|EHB08857.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 176
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP S FF+F E+ + K +HP S+ V K E W + + DK PY KA
Sbjct: 28 KDPNAPKRPPSTFFLFCSEYCPKIKGEHP-GLSIGDVAKKLEEMWNNAAADDKQPYEKKA 86
Query: 93 EKRKVEYEKDMKNY 106
K K YEKD+ Y
Sbjct: 87 AKLKENYEKDIAAY 100
>gi|62660600|ref|XP_573625.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|392333089|ref|XP_003752789.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
Length = 209
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K K
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 98 EYEKDMKNY 106
+YEKD+ Y
Sbjct: 154 KYEKDIAAY 162
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S + F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSLYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|444730059|gb|ELW70455.1| High mobility group protein B1 [Tupaia chinensis]
gi|444730060|gb|ELW70456.1| High mobility group protein B1 [Tupaia chinensis]
Length = 177
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF F E+ + K +HP S+ V K GE W + + DK PY KA
Sbjct: 57 KDPNAPKRPPLAFFFFCSEYCPKIKGEHP-GLSIGDVAKKLGEMWNNTAAGDKQPYEKKA 115
Query: 93 EKRKVEYEKDMKNY 106
K K +YE+D+ Y
Sbjct: 116 AKLKEKYERDIAAY 129
>gi|392340368|ref|XP_003754052.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392347889|ref|XP_003749961.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK P KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPCEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444722397|gb|ELW63094.1| High mobility group protein B1 [Tupaia chinensis]
Length = 178
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K + P S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGE-PPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 149 AKLKEKYDKDIAAY 162
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DP KP+ S++ F++ +E++KK HP + + K E+WK+MS +K +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCQEEHKK-HPDASVNNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ K YE++MK Y
Sbjct: 64 AKADKAPYEREMKTY 78
>gi|58268918|ref|XP_571615.1| nonhistone protein 6 [Cryptococcus neoformans var. neoformans
JEC21]
gi|134112618|ref|XP_774852.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818300|sp|P0CO25.1|NHP6_CRYNB RecName: Full=Non-histone chromosomal protein 6
gi|338818301|sp|P0CO24.1|NHP6_CRYNJ RecName: Full=Non-histone chromosomal protein 6
gi|50257500|gb|EAL20205.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227850|gb|AAW44308.1| nonhistone protein 6, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 116
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPNKPKR SA+ F++++RE+ K ++P+ + VGK G KW+ M+E +K PY AKA
Sbjct: 23 KDPNKPKRALSAYMFFVQDYRERIKTENPE-ATFGDVGKLLGIKWREMNENEKKPYEAKA 81
>gi|301763549|ref|XP_002917185.1| PREDICTED: high mobility group protein B4-like [Ailuropoda
melanoleuca]
Length = 193
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G+K + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++A
Sbjct: 81 VGKKKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKASGKMWSATTDA 139
Query: 84 DKAPYVAKAEKRKVEYEKDMKNY 106
+K PY +A + +Y+++++ Y
Sbjct: 140 EKQPYEQRAALLRAKYQEELEIY 162
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+PK S++ F+ +R ++K+ P + EKW+S+S+ +KA Y A A+
Sbjct: 10 RPKVNVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 96 KVEYEKDMKNY 106
K Y+++M NY
Sbjct: 70 KARYQEEMMNY 80
>gi|351715817|gb|EHB18736.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 165
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+ Q K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFYSEYCPQIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEKD 102
KA K K +YEK+
Sbjct: 146 KKAAKLKEKYEKE 158
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S + F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSLYAFFVQTCREEHKKKHPDASINFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|335892928|gb|AEH59759.1| high mobility group box 1 [Lethenteron camtschaticum]
Length = 208
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G + + KDPN PKRP SAFF++ E+R + + ++P ++ ++ K GE W + +
Sbjct: 83 GERGSRKKKDPNAPKRPPSAFFIYCAEYRSKVRAENP-GLTIGSIAKKLGEMWNNAPADE 141
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K+ Y K K K +Y+KDM +Y
Sbjct: 142 KSIYERKTAKLKEKYDKDMASY 163
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK +P+ + + A K E+WK+MSE +K + A+ KV Y++
Sbjct: 14 SSYAYFVQTCREEHKKKNPEASVNFAEFSKKCSERWKTMSEKEKTRFEDMAKVDKVRYDR 73
Query: 102 DMKNY 106
+MK Y
Sbjct: 74 EMKTY 78
>gi|1419611|emb|CAA67363.1| HMG [Lampetra fluviatilis]
Length = 208
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G + + KDPN PKRP SAFF++ E+R + + ++P ++ ++ K GE W + +
Sbjct: 83 GERGSRKKKDPNAPKRPPSAFFIYCAEYRSKVRAENP-GLTIGSIAKKLGEMWNNAPADE 141
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K+ Y K K K +Y+KDM +Y
Sbjct: 142 KSIYERKTAKLKEKYDKDMASY 163
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK +P+ + + A K E+WK+MSE +K + A+ KV Y++
Sbjct: 14 SSYAYFVQTCREEHKKKNPEASVNFAEFSKKCSERWKTMSEKEKTRFEDMAKVDKVRYDR 73
Query: 102 DMKNY 106
+MK Y
Sbjct: 74 EMKTY 78
>gi|355700906|gb|EHH28927.1| hypothetical protein EGK_09214, partial [Macaca mulatta]
Length = 263
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEK 101
KA K K +YEK
Sbjct: 146 KKAAKLKEKYEK 157
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|448530095|ref|XP_003869985.1| Nhp6a non-histone chromatin component [Candida orthopsilosis Co
90-125]
gi|354547725|emb|CCE44460.1| hypothetical protein CPAR2_402610 [Candida parapsilosis]
gi|380354339|emb|CCG23854.1| Nhp6a non-histone chromatin component [Candida orthopsilosis]
Length = 93
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK + KDP+ PKR SA+ F E R+ + ++P S VGKA G+KWK++S DK
Sbjct: 8 RKVSRKKKDPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKALGDKWKALSAEDK 66
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQA 111
PY KAE K YEK+ Y ++ +
Sbjct: 67 VPYENKAEADKKRYEKEKAEYAKKNS 92
>gi|335308835|ref|XP_003361389.1| PREDICTED: high mobility group protein B4-like [Sus scrofa]
Length = 198
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G K + +DP P+RP S+F +F ++ Q K+++P N SVA V KA W + ++
Sbjct: 81 VGGKRKRRKRDPQAPRRPPSSFLLFCQDNYAQLKRENP-NWSVAQVAKASARMWSTTTDV 139
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
DK PY +A + +Y +++ Y ++Q G+K
Sbjct: 140 DKQPYEQRAALLRAKYHEELSVY-QKQFNGSK 170
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
KPK S++ F+ + ++K+ P + EKW+S+S+ +KA Y A A+
Sbjct: 10 KPKANVSSYIHFLLNYSNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 96 KVEYEKDMKNY 106
K Y+++M+NY
Sbjct: 70 KARYQEEMRNY 80
>gi|296202119|ref|XP_002748265.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390463329|ref|XP_003733013.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK Y KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEIWNNTAADDKQHYEKKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+K+MK Y
Sbjct: 65 KADKARYKKEMKTY 78
>gi|341900759|gb|EGT56694.1| hypothetical protein CAEBREN_25379 [Caenorhabditis brenneri]
Length = 699
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKR SA+ +++ R K++ SVA V K GG+KWK+MS DK + AK EK
Sbjct: 553 PNAPKRATSAYLLWLNANRASLKEE---GDSVADVAKKGGQKWKTMSADDKKEWEAKYEK 609
Query: 95 RKVEYEKDMKNY 106
KV YE +MK Y
Sbjct: 610 EKVRYEAEMKEY 621
>gi|444526057|gb|ELV14266.1| High mobility group protein B1 [Tupaia chinensis]
Length = 166
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP + V K GE W + +K PY KA
Sbjct: 78 KDPNTPKRPPSAFFLFCSEYSPKIKGEHP-GLPIGDVTKKLGEMWNNTGADEKQPYEKKA 136
Query: 93 EKRKVEYEKDMKNYNRR 109
K K +YEKD+ Y R
Sbjct: 137 AKLKEKYEKDIAAYRAR 153
>gi|340520749|gb|EGR50985.1| predicted protein [Trichoderma reesei QM6a]
Length = 83
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+DPN PKR SA+ F E RE ++++P S VGK GE+WK++++ +APY AKA
Sbjct: 2 QDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNDKQRAPYEAKA 60
Query: 93 EKRKVEYEKDMKNYNRRQAE 112
K YE + + YN Q E
Sbjct: 61 AADKKRYEDEKQAYNADQEE 80
>gi|294927522|ref|XP_002779152.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|294931694|ref|XP_002779970.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239888135|gb|EER10947.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239889753|gb|EER11765.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 171
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 13/129 (10%)
Query: 15 LSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKK---DHPKNKSVAAVGK 71
L + KP G+K+ K+ +DPN PK+P +AFF+F + RE+ K+ P K +A
Sbjct: 43 LGLEYKPTVHGKKTKKSVRDPNMPKKPKTAFFLFCDTEREKAKERGDGPPTTKDMA---- 98
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY---NRRQAEGTKPEEEEESEKSMSE 128
E WKS + KA Y + K K +YEKDM Y + G+ P + +S + S
Sbjct: 99 ---ETWKSADDDVKAHYSNEQAKLKEQYEKDMNAYYAGKQHSGSGSPPPSKRDSPDTSSA 155
Query: 129 VNDEDDDEE 137
DE+++ +
Sbjct: 156 SEDEEENAQ 164
>gi|260942113|ref|XP_002615355.1| hypothetical protein CLUG_04237 [Clavispora lusitaniae ATCC 42720]
gi|238850645|gb|EEQ40109.1| hypothetical protein CLUG_04237 [Clavispora lusitaniae ATCC 42720]
Length = 195
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS---VAAVGKAGGEKWKSMSEADKA 86
K A+DPN PK+P +A+++F E+ +E+ K + KS V K E+WKSMS+ K+
Sbjct: 53 KMARDPNLPKKPLNAYWIFFEKEKERVKAELEAGKSEKPALDVSKTLTERWKSMSDEQKS 112
Query: 87 PYVAKAEKRKVEYEKDMKNYNR 108
PY E+ ++ Y+ +M +N+
Sbjct: 113 PYQKLYEEDRLRYQTEMTIFNQ 134
>gi|157832121|pdb|1NHM|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
gi|157832122|pdb|1NHN|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
Length = 81
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA K
Sbjct: 3 NAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 61
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 62 KEKYEKDIAAY 72
>gi|355766483|gb|EHH62519.1| hypothetical protein EGM_20887 [Macaca fascicularis]
Length = 198
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D N PKRP S FF+F +F + K +P S+ + K GE WK++++++K PY+ KA
Sbjct: 76 DSNAPKRPPSGFFLFSSKFCPKMKSTNP-GISIGDMVKKLGEMWKNLNDSEKQPYITKAA 134
Query: 94 KRKVEYEKDM 103
K K +YEKD+
Sbjct: 135 KLKDKYEKDV 144
>gi|444721179|gb|ELW61931.1| High mobility group protein B1 [Tupaia chinensis]
Length = 212
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ + K GE W + + K PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSMGDIAKKLGELWNNTAADGKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEK++ Y
Sbjct: 149 AKLKEKYEKNIAAY 162
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+P KP+ S++ F++ RE+ KK HP + + + K E+ K+MS +K + A
Sbjct: 5 EPKKPRGKMSSYAFFVQTCREEPKKKHPDASVNFSEFSKTCSERGKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KVDKAGYEREMKTY 78
>gi|315051466|ref|XP_003175107.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS 118893]
gi|311340422|gb|EFQ99624.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS 118893]
Length = 102
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K KS TR K V KK KDPN PKR SA+ +F E R ++++P +
Sbjct: 3 KEKSTTRKTKRGVEKK-----------KKDPNAPKRGLSAYMIFANEQRASVREENP-SI 50
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
+ VGK GE+WK++++ + PY KA K YE + YN R E
Sbjct: 51 TFGQVGKVLGERWKALTDKQRKPYEEKAATDKQRYEDEKAAYNSRLEE 98
>gi|395830755|ref|XP_003788484.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 135
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN P RP SAFF+F E+ + K +HP S+ V K GE W + DK PY KA
Sbjct: 16 KDPNAPNRPPSAFFLFCSEYHPEIKGEHP-GLSIGDVAKKLGEMWNYTAVDDKQPYEKKA 74
Query: 93 EKRKVEYEKDM 103
K K +YEKD+
Sbjct: 75 AKLKEKYEKDI 85
>gi|355754606|gb|EHH58507.1| hypothetical protein EGM_08375 [Macaca fascicularis]
Length = 263
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEK 101
KA K K +YEK
Sbjct: 146 KKAAKLKEKYEK 157
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|307191139|gb|EFN74837.1| High mobility group protein DSP1 [Camponotus floridanus]
Length = 205
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W S
Sbjct: 106 PERPTRRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPE-MGVGDIAKELGKLWMST 164
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEE 118
K+ Y+A AE+ + YE+++ YN+R + PEE
Sbjct: 165 DLQTKSKYMAIAEEDRARYEREIIAYNKR-VKNYDPEE 201
>gi|448084218|ref|XP_004195549.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
gi|359376971|emb|CCE85354.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+++ + KDP+ PKR SA+ F E R+ + ++P S VGK GEKWK+M+ DK
Sbjct: 7 KRASRKKKDPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKAMTSDDK 65
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQA 111
PY +KAE K YEK+ Y ++ +
Sbjct: 66 TPYESKAEADKKRYEKEKAEYAKKNS 91
>gi|405121060|gb|AFR95829.1| nonhistone protein 6 [Cryptococcus neoformans var. grubii H99]
Length = 116
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPNKPKR SA+ F++++RE+ K ++P+ + VGK G KW+ M+E +K PY AKA
Sbjct: 23 KDPNKPKRALSAYMFFVQDYRERIKAENPE-ATFGDVGKLLGIKWREMNENEKKPYEAKA 81
>gi|302497713|ref|XP_003010856.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
gi|291174401|gb|EFE30216.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
Length = 106
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+ + PY KA
Sbjct: 19 KDPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSDKQRVPYEEKA 77
Query: 93 EKRKVEYEKDMKNYN 107
K YE + YN
Sbjct: 78 ATDKQRYEDEKAAYN 92
>gi|225703820|gb|ACO07756.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 193
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN KRP SAFF+F +FR + K +HP S+ K G W S + +K PY KA
Sbjct: 89 KDPNALKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNSSAAEEKKPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K +Y+KD+ +Y
Sbjct: 148 ATLKEKYDKDIASY 161
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ R ++KK P+ + + A K E+WK MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKQPEASVNFAEFSKKCSERWKPMSPKEKGTFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|354476918|ref|XP_003500670.1| PREDICTED: high mobility group protein B4-like [Cricetulus griseus]
Length = 180
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ + +DP+ P++P S+F +F + Q K D+P N SV V KA G+ W S D
Sbjct: 80 GKRRKRRKRDPHAPRQPPSSFLLFSLDHYAQLKHDNP-NWSVVQVAKATGKMWSMTSNVD 138
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
K PY KA + +Y +D++NY R+Q +
Sbjct: 139 KQPYEQKAALLRAKYFEDVENY-RKQFQ 165
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+PK S++ FM +R ++K+ P + EKW+S+S+ +KA Y A A+
Sbjct: 8 RPKVNVSSYIHFMLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 96 KVEYEKDMKNY 106
K Y+++M NY
Sbjct: 68 KARYQEEMMNY 78
>gi|406862701|gb|EKD15750.1| nucleosome binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 102
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E RE ++++P + VGK GE+WK++++ + PY AKA
Sbjct: 20 KDPNAPKRGLSAYMFFANEQRENVREENP-GITFGQVGKVLGERWKALNDKQRTPYEAKA 78
Query: 93 EKRKVEYEKDMKNYN 107
+ K YE + +YN
Sbjct: 79 AQDKKRYEDEKASYN 93
>gi|71019847|ref|XP_760154.1| hypothetical protein UM04007.1 [Ustilago maydis 521]
gi|46099871|gb|EAK85104.1| hypothetical protein UM04007.1 [Ustilago maydis 521]
Length = 286
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K G K +DP KPKRP SAFF F+ + R ++ K GGE+WK MS
Sbjct: 199 KKGIKGTAFLRDPAKPKRPNSAFFEFLNDLRA----SEAVIPNITEFSKRGGERWKQMSA 254
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYN 107
KAPY +A + +Y++D++ YN
Sbjct: 255 EQKAPYEQRALQALEQYKRDLELYN 279
>gi|395329999|gb|EJF62384.1| hypothetical protein DICSQDRAFT_161203 [Dichomitus squalens
LYAD-421 SS1]
Length = 662
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR-------EQYKKDHPKNK-SVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ R E + + K SV A GK
Sbjct: 509 AQRKAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRSDPELVKEVFGDETETTKQSVLAAGK 568
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++ ++ P++A+AE+ K+EYE K Y
Sbjct: 569 -----WRSMTDEERKPFLAQAEQEKLEYESARKMY 598
>gi|410966739|ref|XP_003989887.1| PREDICTED: high mobility group protein B4 [Felis catus]
Length = 193
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G+K + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + + A+
Sbjct: 82 GKKKKRRKRDPYAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKASGKMWSATTGAE 140
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
K PY +A + +Y++D++ Y R+Q + K
Sbjct: 141 KQPYEQRAALLRAKYQEDLEIY-RKQRKANK 170
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+PK S++ F+ +R ++K+ P S + EKW+S+S+ +KA Y A A+
Sbjct: 10 RPKANVSSYIHFLLNYRNKFKEQQPNTYLSFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 96 KVEYEKDMKNY 106
K Y+++M NY
Sbjct: 70 KARYQEEMMNY 80
>gi|384500344|gb|EIE90835.1| hypothetical protein RO3G_15546 [Rhizopus delemar RA 99-880]
Length = 183
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 22/136 (16%)
Query: 22 AKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
K GRKS AA +DPN PK P + FF++ R+ K + P N+S+ V + G+K
Sbjct: 34 VKPGRKSTNAAVAKKKRDPNAPKGPGNVFFLYCRMERDNIKDEVP-NESLGEVTRLLGQK 92
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR----------------RQAEGTKPEEEE 120
WK++++ +K Y +K EYE MK+Y RQ E KPE+ E
Sbjct: 93 WKALTKEEKQKYYDIYKKEMEEYESAMKSYTAAGGGIEGAAAVEANKSRQEEMMKPEDIE 152
Query: 121 ESEKSMSEVNDEDDDE 136
++ ++ ED+DE
Sbjct: 153 FDDEDEVDMLQEDEDE 168
>gi|281349442|gb|EFB25026.1| hypothetical protein PANDA_005395 [Ailuropoda melanoleuca]
Length = 181
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G+K + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++A
Sbjct: 79 VGKKKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKASGKMWSATTDA 137
Query: 84 DKAPYVAKAEKRKVEYEKDMKNY 106
+K PY +A + +Y+++++ Y
Sbjct: 138 EKQPYEQRAALLRAKYQEELEIY 160
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+PK S++ F+ +R ++K+ P + EKW+S+S+ +KA Y A A+
Sbjct: 8 RPKVNVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 96 KVEYEKDMKNY 106
K Y+++M NY
Sbjct: 68 KARYQEEMMNY 78
>gi|358255365|dbj|GAA57072.1| high mobility group protein B1, partial [Clonorchis sinensis]
Length = 778
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PA G KS K KDPN PK+ SAFF+F + R + K DHP K V+ + K G++W++
Sbjct: 620 PADEG-KSRKRKKDPNAPKKALSAFFLFCNDERPKVKADHPDWK-VSEIAKELGKRWETC 677
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+K+ Y ++A+ K YEK + R
Sbjct: 678 K--NKSKYESQAQVEKQRYEKALPGPRR 703
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
AKD +KPK + + +F++ KK HP K E+WK+++ +K +
Sbjct: 542 AKDKSKPKGALTPYALFLQSMHADQKKKHPSVTLDFKTFSKECSEQWKNLTAKEKKKFED 601
Query: 91 KAEKRKVEYEKDMKNYNRRQAEGTKPEEEEE 121
A K K Y K+M++Y EG + +++
Sbjct: 602 LAAKDKERYRKEMQSYEPPADEGKSRKRKKD 632
>gi|402077455|gb|EJT72804.1| non-histone chromosomal protein 6 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 101
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KK AK ++ GK KDP PKR SA+ F E RE ++++P S VGK GE+WK
Sbjct: 7 KKGAKTEKRRGK--KDPLAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWK 63
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
++S+ +APY AKA K YE + YN
Sbjct: 64 ALSDKQRAPYDAKAAADKKRYEDEKAAYN 92
>gi|395857899|ref|XP_003801318.1| PREDICTED: high mobility group protein B4 [Otolemur garnettii]
Length = 187
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ + KDP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + A+
Sbjct: 80 GKRKKRRKKDPQAPRRPPSSFLLFCKDHYAQLKRENP-NWSVVQVAKASGKMWSLSTNAE 138
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
K PY +A + +Y+++++ Y RRQ K
Sbjct: 139 KQPYEERAALLRAKYQEELQIY-RRQCNARK 168
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAA--VGKAGGEKWKSMSEADKAPYVAKAEK 94
+PK S++ F+ +R ++K+ P N V + EKW+S+S+ +KA Y A A+
Sbjct: 8 RPKVNVSSYIHFLLNYRNKFKEQQP-NTYVGFKDFSRKCSEKWRSISKHEKAKYEALAKL 66
Query: 95 RKVEYEKDMKNYN 107
K Y+++M +Y+
Sbjct: 67 DKARYQEEMMHYD 79
>gi|148684659|gb|EDL16606.1| mCG50402 [Mus musculus]
Length = 214
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F + + K +HP + S+ V K GE W + + DK PY KA
Sbjct: 89 KDPNAPKRPPSAFFLFYSVYYPKIKGEHP-DLSIGDVAKKLGEMWNNAAADDKQPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDIAAY 161
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ FM+ R+++KK HP + + + K E+WK+MS +K + A
Sbjct: 3 DPKKPRGKMSSYAFFMQTCRKEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 62
Query: 93 EKRKVEYEKDMKNY 106
+ K Y++ +K Y
Sbjct: 63 KADKARYKRKIKTY 76
>gi|444722479|gb|ELW63171.1| High mobility group protein B2 [Tupaia chinensis]
Length = 147
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKRP SAFF+F E + K +HP S+ K GE W S DK P KA K
Sbjct: 30 PNTPKRPPSAFFLFCSEHLPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPCEQKAAK 88
Query: 95 RKVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 89 LKEKYEKDIAAY 100
>gi|145233003|ref|XP_001399874.1| non-histone chromosomal protein 6 [Aspergillus niger CBS 513.88]
gi|317026969|ref|XP_003188583.1| non-histone chromosomal protein 6 [Aspergillus niger CBS 513.88]
gi|134056796|emb|CAK37704.1| unnamed protein product [Aspergillus niger]
gi|350634700|gb|EHA23062.1| hypothetical protein ASPNIDRAFT_206990 [Aspergillus niger ATCC
1015]
Length = 103
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F + RE+ ++++P S VGK GE+WK++S+ D+ PY KA
Sbjct: 20 KDPNAPKRGLSAYMFFANDNREKVREENP-GISFGQVGKMLGERWKALSDTDRRPYEEKA 78
Query: 93 EKRKVEYEKDMKNYN 107
K YE + +YN
Sbjct: 79 AADKKRYEDEKASYN 93
>gi|50304233|ref|XP_452066.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636989|sp|Q6CVH3.1|NHP6_KLULA RecName: Full=Non-histone chromosomal protein 6
gi|49641198|emb|CAH02459.1| KLLA0B12056p [Kluyveromyces lactis]
Length = 93
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+K+ + KDPN PKR SA+ F E R+ + ++P + VG+ GEKWK+++E +K
Sbjct: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENP-GITFGQVGRILGEKWKALNEDEK 64
Query: 86 APYVAKAE--KRKVEYEKDMKNYNRRQAE 112
APY AKAE K++ E EK++ + Q+E
Sbjct: 65 APYEAKAEADKKRYESEKELYIATKAQSE 93
>gi|322797845|gb|EFZ19753.1| hypothetical protein SINV_15148 [Solenopsis invicta]
Length = 220
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W S
Sbjct: 121 PERPTRRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPE-MGVGDIAKELGKLWMST 179
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEE 118
K+ Y+A AE+ + YE+++ YN+R + PEE
Sbjct: 180 DLQTKSKYMAIAEEDRARYEREIIAYNKR-VKNYDPEE 216
>gi|258563818|ref|XP_002582654.1| nonhistone chromosomal protein 6A [Uncinocarpus reesii 1704]
gi|237908161|gb|EEP82562.1| nonhistone chromosomal protein 6A [Uncinocarpus reesii 1704]
Length = 115
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKR SA+ F E RE ++++P S VGK GE+WK++S+ +APY KA
Sbjct: 22 PNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALSDKQRAPYEEKAAA 80
Query: 95 RKVEYEKDMKNYNRRQAEGTKPEEEEES 122
K YE + +YN+ PEE+EES
Sbjct: 81 DKKRYEDEKASYNQ------APEEDEES 102
>gi|440804471|gb|ELR25348.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 205
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR +A+ +F +E R Q K DHP VGK GE W ++ + DK Y A
Sbjct: 7 KDPNAPKRAMTAYMLFSQEKRTQIKTDHP-TVGFGQVGKLLGEAWAALPDGDKRKYNELA 65
Query: 93 EKRKVEYEKDMKNYNRRQAEGTKPEE 118
K K+ Y+K+ Y E + EE
Sbjct: 66 AKDKIRYQKEAAQYKEDHPESSDEEE 91
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PK+P SAFF F ++ R + K ++P + S +GK GE+W + ++ + A
Sbjct: 100 KDPNAPKKPCSAFFHFSKKMRPRIKDENP-DASFGQLGKIIGEQWSKLGADERKEFETLA 158
Query: 93 EKRKVEYEKDMKNYN 107
K Y K+MK+Y
Sbjct: 159 AADKERYAKEMKDYQ 173
>gi|343425092|emb|CBQ68629.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 290
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K G K +DP KPKRP SAFF F+ + R ++ K GGE+WK MS
Sbjct: 203 KKGIKGTAFLRDPAKPKRPNSAFFEFLNDLRA----SEAVIPNITEFSKRGGERWKQMSA 258
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYN 107
KAPY +A + +Y++D++ YN
Sbjct: 259 EQKAPYEQRALQALEQYKRDLEIYN 283
>gi|346324407|gb|EGX94004.1| nucleosome binding protein [Cordyceps militaris CM01]
Length = 96
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E R+ ++++P S VGK GE+WK++SE + PY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRDNVREENP-GVSFGQVGKILGERWKALSEKQRVPYE 76
Query: 90 AKAEKRKVEYEKDMKNYN 107
AKA K YE + YN
Sbjct: 77 AKAAADKKRYEDEKAAYN 94
>gi|400599237|gb|EJP66941.1| HMG box protein [Beauveria bassiana ARSEF 2860]
Length = 96
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+ + PY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSDKQRTPYE 76
Query: 90 AKAEKRKVEYEKDMKNYN 107
AKA K YE + YN
Sbjct: 77 AKAAADKKRYEDEKAAYN 94
>gi|392568491|gb|EIW61665.1| hypothetical protein TRAVEDRAFT_115835 [Trametes versicolor
FP-101664 SS1]
Length = 585
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR-------EQYKKDHPKNK-SVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ R E + + K SV A GK
Sbjct: 432 AQRKAGKSRKGNLKDPNAPKKPLSAYFMFLQRIRSDPELVQEVFGDETETTKQSVLAAGK 491
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++ + P++A+AE+ K+EYE K Y
Sbjct: 492 -----WRSMTDEQRKPFLAQAEQEKLEYESARKMY 521
>gi|384496847|gb|EIE87338.1| hypothetical protein RO3G_12049 [Rhizopus delemar RA 99-880]
Length = 157
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR S++ ++ + R + +HP K++ + K GE W +SE +K PYV +A+
Sbjct: 42 DPNAPKRNLSSYMLYTQAVRPKVVAEHPDMKAIE-IAKFVGEMWNKLSEKEKMPYVKQAQ 100
Query: 94 KRKVEYEKDMKNY 106
K KV +EK+ +Y
Sbjct: 101 KEKVRFEKENASY 113
>gi|312281655|dbj|BAJ33693.1| unnamed protein product [Thellungiella halophila]
Length = 646
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR S F F + R+ KK HP + VGK G+KW+ MS +K PY AKA+
Sbjct: 558 DPNAPKRAMSGFMFFSQMERDNIKKTHP-GIAFGEVGKVLGDKWRQMSAEEKEPYEAKAQ 616
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEES 122
K Y+ ++ +Y Q E E +S
Sbjct: 617 VDKKRYKDEISDYKNPQPMLVDSENESDS 645
>gi|389585513|dbj|GAB68243.1| high mobility group protein [Plasmodium cynomolgi strain B]
Length = 107
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFR-EQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
RK K KDP+ PKR SA+ F +E R E +D +K VA VGK GE W + E +
Sbjct: 19 RKRRKNKKDPHAPKRSLSAYMFFAKEKRAEIISRDPDLSKDVATVGKMIGEAWNKLDELE 78
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
KAPY KA++ KV YE++ Y
Sbjct: 79 KAPYEKKAQEDKVRYEREKVEY 100
>gi|299748049|ref|XP_001837422.2| hypothetical protein CC1G_01334 [Coprinopsis cinerea okayama7#130]
gi|298407795|gb|EAU84338.2| hypothetical protein CC1G_01334 [Coprinopsis cinerea okayama7#130]
Length = 558
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFREQYK--------KDHPKNKSVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ R K + +SV A K
Sbjct: 423 AQRKAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRADPKLVKEIFGDETETTKQSVLAAAK 482
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++A++ P++A+AE+ K+EYE + Y
Sbjct: 483 -----WRSMTDAERQPFLAQAEQEKMEYEAARRLY 512
>gi|167536391|ref|XP_001749867.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771582|gb|EDQ85246.1| predicted protein [Monosiga brevicollis MX1]
Length = 197
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
V++ P + + +A KDPNKPK SA+ F ++ R Q+ KD+P +K + V K G
Sbjct: 17 VHEAPRQKRPRQKRAKKDPNKPKNAQSAYMFFSQKVRPQFSKDNP-DKKMTDVSKLIGAA 75
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+ MS+A K PY A + K Y+ M Y
Sbjct: 76 WREMSDAAKKPYEEMARRDKQRYQHQMATY 105
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + K GK KDP+ PK+P +A+F++ + R + + +N +VA + K G +WK +
Sbjct: 109 PTRELGKRGKRRKDPDAPKKPLTAYFLYAADRRAALRAQN-RNATVADIAKIIGAEWKDL 167
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+A K PY +A++ K +Y+K+++ Y
Sbjct: 168 SDAVKKPYQDRADRLKSQYQKEVELY 193
>gi|170591488|ref|XP_001900502.1| High mobility group protein 1.2 [Brugia malayi]
gi|158592114|gb|EDP30716.1| High mobility group protein 1.2, putative [Brugia malayi]
Length = 235
Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
A RK + KDPN PKR SAFF F + R + ++ HP+ K V V + G WK++ E
Sbjct: 101 ALRKRKRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRFWKALGEE 159
Query: 84 DKAPYVAKAEKRKVEYEKDMKNY 106
++A Y KA + K Y ++M+NY
Sbjct: 160 ERAVYERKALEDKERYAEEMRNY 182
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEAD 84
R+ ++AK P + K FFV M E++KK +P +N V + K EKWK+MS+ +
Sbjct: 17 RRMRESAKPPVRGKTSPYGFFVKM--CYEEHKKKYPNENVQVTEISKKCSEKWKTMSDDE 74
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K + A+K Y+ ++ Y
Sbjct: 75 KRRFFELAQKDAERYQAEVAAY 96
>gi|183014156|dbj|BAG24407.1| hypothetical protein [Coprinopsis cinerea]
Length = 558
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFREQYK--------KDHPKNKSVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ R K + +SV A K
Sbjct: 423 AQRKAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRADPKLVKEIFGDETETTKQSVLAAAK 482
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++A++ P++A+AE+ K+EYE + Y
Sbjct: 483 -----WRSMTDAERQPFLAQAEQEKMEYEAARRLY 512
>gi|203465|gb|AAA40927.1| HMG box (bp. 1168..1428), partial [Rattus norvegicus]
Length = 561
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + K E
Sbjct: 395 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKGE 453
Query: 94 KRKVEYEKDMKNY 106
+ EYE+ MK Y
Sbjct: 454 DARREYEEAMKEY 466
>gi|444729825|gb|ELW70228.1| High mobility group protein B1 [Tupaia chinensis]
Length = 141
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDP+ PKRP SAFF+F E+R + K + P + + V K GE W + + K PY A
Sbjct: 28 KDPSAPKRPPSAFFLFCSEYRPEIKGERP-GRFIGDVAKRLGEMWNNTAADGKQPYEKNA 86
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 87 AKLKGKYEKDIAAY 100
>gi|358372276|dbj|GAA88880.1| nucleosome binding protein (Nhp6a) [Aspergillus kawachii IFO 4308]
Length = 104
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F + RE+ ++++P S VGK GE+WK++S+ D+ PY KA
Sbjct: 21 KDPNAPKRGLSAYMFFANDNREKVREENP-GISFGQVGKMLGERWKALSDTDRRPYEEKA 79
Query: 93 EKRKVEYEKDMKNYN 107
K YE + +YN
Sbjct: 80 AADKKRYEDEKASYN 94
>gi|340992807|gb|EGS23362.1| hypothetical protein CTHT_0010300 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 104
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ ++++P S VGK GE+WK++++ +APY AKA
Sbjct: 21 DPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKILGERWKALTDKQRAPYEAKAA 79
Query: 94 KRKVEYEKDMKNYNRRQAEG 113
K YE + + YN QA+G
Sbjct: 80 ADKKRYEDEKQAYN-AQADG 98
>gi|440631791|gb|ELR01710.1| non-histone chromosomal protein 6 [Geomyces destructans 20631-21]
Length = 101
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F +E R+ ++++P S VGK GE+WK++++ + PY KA
Sbjct: 20 KDPNAPKRGLSAYMFFAQEQRDNVREENP-GISFGQVGKVLGERWKALNDKQRTPYETKA 78
Query: 93 EKRKVEYEKDMKNYN 107
++ K YE + +YN
Sbjct: 79 QEDKKRYEDEKASYN 93
>gi|168021929|ref|XP_001763493.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685286|gb|EDQ71682.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 483
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP +PK P SAFF F + R ++ NK V + K GE+WKSMS + +AP+ A
Sbjct: 259 DPLRPKHPISAFFAFSQSRRPALLEE---NKPVTEIAKILGEEWKSMSPSKRAPFEEIAA 315
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESEKS 125
K K Y +++ Y + +AE + E EKS
Sbjct: 316 KEKERYSVELETYKKNKAEDLSTLDREAEEKS 347
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
K+P +AF ++ +++R++ +++P N + A + G+KWK++ E ++ PY + + K
Sbjct: 145 KKPKTAFLLWCKDYRQKVCEENP-NATFAEISTILGDKWKNVPEEERKPYEDRYKVEKNV 203
Query: 99 YEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDE 132
Y K + RR+ E K EE+++K E+ ++
Sbjct: 204 YLK-LVGEERRETEALKLFHEEQNKKQAQELLEQ 236
>gi|341879743|gb|EGT35678.1| CBN-HMG-1.2 protein [Caenorhabditis brenneri]
Length = 235
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
A RK +A KDP+ PKR SAFF + ++ R + + HP K V V + G+ WK +S+
Sbjct: 121 AMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQSAHPDWK-VGQVAQELGKMWKQVSQE 179
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDED 133
K Y AKA+ K Y +M+NY ++ T + EE V+ ED
Sbjct: 180 LKDSYEAKAQADKDRYADEMRNYKSEMSKMTGMDHYEEDHLGHHVVHVED 229
>gi|393236123|gb|EJD43674.1| hypothetical protein AURDEDRAFT_114700 [Auricularia delicata
TFB-10046 SS5]
Length = 125
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKR SA+ F++++RE+ K+++P + + +GK G KWK MS+ DK PYV +AE+ KV
Sbjct: 28 PKRALSAYMFFVKDWRERIKEENP-DAAFGEIGKLMGAKWKEMSDEDKQPYVEQAEEDKV 86
Query: 98 EYEKD 102
EKD
Sbjct: 87 RAEKD 91
>gi|363755760|ref|XP_003648095.1| hypothetical protein Ecym_7459 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892131|gb|AET41278.1| hypothetical protein Ecym_7459 [Eremothecium cymbalariae
DBVPG#7215]
Length = 94
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P S VG+ GEKWK++S+ +K PY AKAE
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENP-GISFGQVGRVLGEKWKALSDDEKQPYEAKAE 75
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YE + + YN +A
Sbjct: 76 ADKKRYESEKELYNATKA 93
>gi|38047781|gb|AAR09793.1| similar to Drosophila melanogaster HmgZ, partial [Drosophila
yakuba]
Length = 104
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+ + DK + KA K
Sbjct: 4 DRPKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKTEWEQKAIKM 60
Query: 96 KVEYEKDMKNY 106
K EY K +K Y
Sbjct: 61 KEEYNKAVKEY 71
>gi|401626897|gb|EJS44815.1| nhp6bp [Saccharomyces arboricola H-6]
Length = 99
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GE+WK
Sbjct: 8 KQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANETRDIVRSENP-DVTFGQVGRILGERWK 66
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111
+++ +K PY +KA+ K YE + + YN +A
Sbjct: 67 ALTAEEKVPYESKAQADKKRYESEKELYNATRA 99
>gi|312075672|ref|XP_003140521.1| high mobility group protein 1.2 [Loa loa]
gi|307764316|gb|EFO23550.1| high mobility group protein 1.2 [Loa loa]
Length = 211
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
A RK + KDPN PKR SAFF F + R + ++ HP+ K V V + G WK++ E
Sbjct: 83 ALRKRKRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRFWKALGEE 141
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKP 116
++A Y KA + K Y ++M+NY + P
Sbjct: 142 ERAVYERKALEDKERYAEEMRNYKGTPVQTITP 174
>gi|164661201|ref|XP_001731723.1| hypothetical protein MGL_0991 [Malassezia globosa CBS 7966]
gi|159105624|gb|EDP44509.1| hypothetical protein MGL_0991 [Malassezia globosa CBS 7966]
Length = 97
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 41/73 (56%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G + KA KDP PKRP SA+ F +++R+ K SV VG+ G KWK MS+
Sbjct: 11 TGTRRTKAKKDPAAPKRPLSAYMFFSQDWRDASKPRTLTQDSVCDVGRLLGTKWKEMSDE 70
Query: 84 DKAPYVAKAEKRK 96
+K PYV A K K
Sbjct: 71 EKKPYVEMASKDK 83
>gi|409075858|gb|EKM76234.1| hypothetical protein AGABI1DRAFT_16670, partial [Agaricus bisporus
var. burnettii JB137-S8]
gi|426193694|gb|EKV43627.1| hypothetical protein AGABI2DRAFT_56560, partial [Agaricus bisporus
var. bisporus H97]
Length = 106
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87
S K+ KDP PKR SA+ F +++RE+ K ++P+ VGK G KWK M E +K P
Sbjct: 13 SRKSKKDPKAPKRALSAYMFFSQDWRERIKTENPEA-GFGEVGKLLGAKWKEMDEEEKKP 71
Query: 88 YV--AKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
YV A A+K + E EK + ++ A G EE+E
Sbjct: 72 YVEQATADKTRAEKEKASYDSGKKSASGDDEEEDE 106
>gi|321259756|ref|XP_003194598.1| nonhistone protein 6 [Cryptococcus gattii WM276]
gi|317461070|gb|ADV22811.1| Nonhistone protein 6, putative [Cryptococcus gattii WM276]
Length = 110
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPNKPKR SA+ F++++RE+ K ++P+ + VGK G KW+ M+E +K PY AKA
Sbjct: 23 KDPNKPKRALSAYMFFVQDYRERIKAENPEA-TFGDVGKLLGIKWREMNENEKKPYEAKA 81
>gi|444517137|gb|ELV11379.1| High mobility group protein B1 [Tupaia chinensis]
Length = 204
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + K PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDVAKRLGELWNNTAADGKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ F+E++KK HP + S + K EKWK+MS +K + +A
Sbjct: 5 DPKKRRSIMSSYAFFVQTFQEEHKKQHPDASVSFSEFPKKCSEKWKAMSAKEKGKFEDRA 64
Query: 93 EKRKVEYEKDMKN 105
+ K YE+DMK
Sbjct: 65 KADKASYERDMKT 77
>gi|432889764|ref|XP_004075350.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 194
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F +FR + K + P S+ K GE W
Sbjct: 76 NYVPPKGQKK--KRFKDPNAPKRPPSAFFLFCADFRPKIKSESP-GLSIGDTAKKLGEMW 132
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S S +K PY KA K K +Y+KD+ Y
Sbjct: 133 NSSSAEEKQPYEKKAAKLKEKYDKDIVAY 161
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K +
Sbjct: 2 VKDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSPKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 62 MAKQDKVRYEREMKNY 77
>gi|384491850|gb|EIE83046.1| hypothetical protein RO3G_07751 [Rhizopus delemar RA 99-880]
Length = 101
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+K+ ++ KDP+ PKR SA+ F ++ R K+++PK S +GK GE+WK++SE +K
Sbjct: 21 KKARRSKKDPSAPKRGLSAYMFFSQDQRPTVKEENPKA-SFGEIGKILGERWKALSEEEK 79
Query: 86 APYVAKAEKRKVEYE 100
PY+ KAE K YE
Sbjct: 80 KPYLKKAEDDKKRYE 94
>gi|344300446|gb|EGW30767.1| Non-histone chromosomal protein 6 [Spathaspora passalidarum NRRL
Y-27907]
Length = 93
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK+ + KDP+ PKR SA+ F E R+ + ++P S VGK GEKWK+++ +K
Sbjct: 8 RKATRKKKDPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALTADEK 66
Query: 86 APYVAKAEKRKVEYEKDMKNYNRR 109
PY KAE K YEK+ Y +R
Sbjct: 67 VPYENKAETDKKRYEKEKAEYAKR 90
>gi|301097589|ref|XP_002897889.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262106637|gb|EEY64689.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 210
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P+ K + KDPN PKR SA+F F + R++ + ++P NK + + EKW+++
Sbjct: 100 PSFESTKGSRKKKDPNAPKRALSAYFFFCNDIRQEVRDENP-NKKITEIATLLAEKWRAL 158
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYN 107
+ +A Y E+ KV+Y++ M YN
Sbjct: 159 PDKKRAKYQKMNEEAKVKYQQQMDVYN 185
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY--VA 90
KD N PKR SAF F + R+ KK+ P + + G +WK +S+ D+ PY +A
Sbjct: 24 KDKNAPKRALSAFMFFSNDIRDTVKKEMP-DLQFLEISSEIGRRWKQISDEDRRPYDELA 82
Query: 91 KAEKRKVEYEKD 102
A+KR+ + EK+
Sbjct: 83 AADKRRYQEEKE 94
>gi|45187563|ref|NP_983786.1| ADL310Wp [Ashbya gossypii ATCC 10895]
gi|74694642|sp|Q75B82.1|NHP6_ASHGO RecName: Full=Non-histone chromosomal protein 6
gi|44982301|gb|AAS51610.1| ADL310Wp [Ashbya gossypii ATCC 10895]
gi|374106998|gb|AEY95906.1| FADL310Wp [Ashbya gossypii FDAG1]
Length = 94
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P S VG+ GEKWK++S+ +K PY AKAE
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENP-GISFGQVGRVLGEKWKALSDDEKQPYEAKAE 75
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YE + + YN +A
Sbjct: 76 ADKKRYESEKELYNATKA 93
>gi|339715208|ref|NP_001092721.2| high-mobility group box 1b [Danio rerio]
Length = 197
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F ++R + K ++P S+ + K GE W
Sbjct: 76 NYIPPKGEKK--KRFKDPNAPKRPPSAFFIFCGDYRPKIKGENP-GLSIGDIAKKLGEMW 132
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
S S K PY KA K K +Y+KD+ Y + G
Sbjct: 133 NSSSAEVKQPYEKKAAKLKEKYDKDIALYRTKGIAG 168
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 2 GKDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 62 MAKQDKVRYEREMKNY 77
>gi|296221849|ref|XP_002756934.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 203
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KD N PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 87 KDRNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWSNTAADDKQPYEKKA 145
Query: 93 EKRKVEYEKDMKNY 106
K K + EKD+ Y
Sbjct: 146 AKLKEKCEKDIAAY 159
>gi|409043132|gb|EKM52615.1| hypothetical protein PHACADRAFT_164552 [Phanerochaete carnosa
HHB-10118-sp]
Length = 115
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KD N PKR SA+ F +++RE+ K ++P + S +GK G KWK + E +K PY+
Sbjct: 22 KTKKDKNAPKRALSAYMFFSQDWRERVKAENP-DASFGELGKLLGTKWKELDEEEKKPYI 80
Query: 90 AKAEKRKVEYEKDMKNYN 107
+AE+ K E++ K+Y+
Sbjct: 81 EQAERDKARAEREKKDYD 98
>gi|351704050|gb|EHB06969.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 156
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F ++R + K +HP S K GE W S DK PY K K
Sbjct: 43 NAPKRPPSAFFLFCSKYRPKIKSEHP-GLSTGDTAKKSGEMWSEQSAKDKQPYEQKGAKL 101
Query: 96 KVEYEKDMKNYN 107
+YEKD+ Y+
Sbjct: 102 MEKYEKDIAAYH 113
>gi|158300246|ref|XP_320213.4| AGAP012335-PA [Anopheles gambiae str. PEST]
gi|157013066|gb|EAA00360.4| AGAP012335-PA [Anopheles gambiae str. PEST]
Length = 728
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP++AF +FM REQ KKD P S+ + K GGE WK + DK + AKA
Sbjct: 563 DPNAPKRPSTAFMLFMNASREQIKKDFP-GLSITEMSKKGGELWKELK--DKKEWEAKAA 619
Query: 94 KRKVEYEKDM 103
K K +Y + M
Sbjct: 620 KAKDDYTEAM 629
>gi|443897570|dbj|GAC74910.1| HMG box-containing protein [Pseudozyma antarctica T-34]
Length = 280
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K G K +DP KPKRP SAFF F+ + R ++ K GGE+WK M+
Sbjct: 193 KKGIKGTAFLRDPAKPKRPNSAFFEFLNDLRA----SESVIPNITEFSKRGGERWKQMTP 248
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYN 107
KAPY +A + +Y++D++ YN
Sbjct: 249 DQKAPYEQRALQALEQYKRDLEVYN 273
>gi|413943061|gb|AFW75710.1| hypothetical protein ZEAMMB73_996127 [Zea mays]
Length = 95
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 40/50 (80%), Gaps = 2/50 (4%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
KP K GRK+ KA KDPNKPKR +AFFV M EFR+++K+ +PK KSVAAV
Sbjct: 30 KPTK-GRKA-KAGKDPNKPKRAPNAFFVLMGEFRKEFKEKNPKIKSVAAV 77
>gi|729729|sp|P40622.1|HMG1A_CHITE RecName: Full=Mobility group protein 1A
gi|156587|gb|AAA21712.1| high mobility group protein 1a [Chironomus tentans]
Length = 114
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SA+ +++ RE KK++P K V + K GGE W+ M DK+ + AKA K K
Sbjct: 4 KPKRPLSAYMLWLNSARESIKKENPDFK-VTEIAKKGGELWRGMK--DKSEWEAKAAKMK 60
Query: 97 VEYEKDMKNYNR 108
EYEK MK + R
Sbjct: 61 EEYEKAMKEFER 72
>gi|221059780|ref|XP_002260535.1| High mobility group protein [Plasmodium knowlesi strain H]
gi|193810609|emb|CAQ42507.1| High mobility group protein, putative [Plasmodium knowlesi strain
H]
Length = 104
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFR-EQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
RK K KDP+ PKR SA+ F +E R E +D +K VA VGK GE W + E +
Sbjct: 16 RKRRKNKKDPHAPKRSLSAYMFFAKEKRAEIISRDPDLSKDVATVGKMIGEAWNKLDERE 75
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
KAPY KA++ KV YE++ Y
Sbjct: 76 KAPYEKKAQEDKVRYEREKVEY 97
>gi|70999478|ref|XP_754458.1| nucleosome binding protein (Nhp6a) [Aspergillus fumigatus Af293]
gi|74674416|sp|Q4WY33.1|NHP6_ASPFU RecName: Full=Non-histone chromosomal protein 6
gi|66852095|gb|EAL92420.1| nucleosome binding protein (Nhp6a), putative [Aspergillus fumigatus
Af293]
gi|159127475|gb|EDP52590.1| nucleosome binding protein (Nhp6a), putative [Aspergillus fumigatus
A1163]
Length = 104
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R++ ++++P S VGK GE+WK++S++++ PY KA
Sbjct: 20 KDPNAPKRGLSAYMFFANENRDKVREENP-GISFGQVGKMLGERWKALSDSERRPYEEKA 78
Query: 93 EKRKVEYEKDMKNYNRRQAEGTKPEEEEES 122
K YE + +YN + E+EEES
Sbjct: 79 AADKKRYEDEKASYN-----AAQDEDEEES 103
>gi|351698366|gb|EHB01285.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 211
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP+SAFF+F E R + K +HP S+ K G+ W S DK PY K K
Sbjct: 94 NAPKRPSSAFFLFCCEHRPKIKSEHP-GLSIGDTAKELGKMWSEQSAKDKQPYEQKVAKL 152
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 153 KEKYEKDIAPY 163
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ +
Sbjct: 5 DPNKPRGKMSSYAFFVQNCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMP 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSYKTRYDREMKNY 78
>gi|17537205|ref|NP_496970.1| Protein HMG-1.1 [Caenorhabditis elegans]
gi|3702826|gb|AAC78598.1| high mobility group protein 1.1 [Caenorhabditis elegans]
gi|15718335|emb|CAB54448.2| Protein HMG-1.1 [Caenorhabditis elegans]
Length = 95
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K +K GKA KDPN PKR SAFF +M+E RE+ KK VA V KA G +W +
Sbjct: 12 PVKRVKKGGKA-KDPNAPKRAMSAFFFWMQENRERIKKP---GMGVADVAKAAGVEWGKL 67
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
+ DK+ + KA K YE D+ NY + Q
Sbjct: 68 T--DKSRWEKKAADDKKRYEVDIANYKKSQ 95
>gi|440900657|gb|ELR51738.1| High mobility group protein B1 [Bos grunniens mutus]
Length = 224
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPY 144
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|443684506|gb|ELT88434.1| hypothetical protein CAPTEDRAFT_172235 [Capitella teleta]
Length = 734
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP SA+F+++ E RE+ K ++P + V + K G++WK ++ DK + A
Sbjct: 546 DPNKPKRPQSAYFLWLNEMREEIKAENP-DAGVTDIAKLAGQRWKEVT--DKTRWEGLAV 602
Query: 94 KRKVEYEKDMKNY 106
K K YEK M+ Y
Sbjct: 603 KAKESYEKAMEEY 615
>gi|82594869|ref|XP_725606.1| high mobility group protein [Plasmodium yoelii yoelii 17XNL]
gi|23480678|gb|EAA17171.1| high mobility group protein [Plasmodium yoelii yoelii]
Length = 105
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFR-EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
K KDP+ PKR SA+ F +E R E +D +K VA VGK GE W + E +KAPY
Sbjct: 22 KNXKDPHAPKRSLSAYMFFAKEKRAEIITRDPSLSKDVATVGKMIGEAWNKLDEREKAPY 81
Query: 89 VAKAEKRKVEYEKDMKNY 106
KA++ K+ YEK+ Y
Sbjct: 82 EKKAQEDKIRYEKEKMEY 99
>gi|365762037|gb|EHN03653.1| Nhp6bp [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401841847|gb|EJT44170.1| NHP6B-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 102
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GEKWK+++ DK
Sbjct: 18 KRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENP-DVTFGQVGRILGEKWKALTAEDK 76
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQA 111
PY +KA+ K YE + + YN +A
Sbjct: 77 QPYESKAQADKKRYESEKELYNATRA 102
>gi|71662243|ref|XP_818131.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70883364|gb|EAN96280.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 26 RKSGKA-AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
R GK AKD N PKR SA+F F+ +FR K HP + SV KA G WK++S+
Sbjct: 192 RGGGKVKAKDENAPKRSMSAYFFFVSDFR----KKHP-DLSVTETSKAAGAAWKALSDDM 246
Query: 85 KAPYVAKAEKRKVEYEKDM 103
K PY A A+K K Y+++M
Sbjct: 247 KKPYEAMAQKDKERYQREM 265
>gi|62647362|ref|XP_575506.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|293346835|ref|XP_001060814.2| PREDICTED: high mobility group protein B1-like isoform 1 [Rattus
norvegicus]
Length = 214
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN KRP SAFF+F E+R + K +HP S+ V K GE W + + DK P KA
Sbjct: 90 KDPNALKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWTNTAVDDKQPCEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSV--AAVGKAGGEKWKSMSEADKAPYVAKA 92
P KP+ S+ F++ RE++KK H N SV + K E+WK+MS +K + A
Sbjct: 6 PKKPRGKMSSHAFFVQTCREEHKKKH-LNASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|389744542|gb|EIM85725.1| hypothetical protein STEHIDRAFT_81292 [Stereum hirsutum FP-91666
SS1]
Length = 581
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR-------EQYKKDHPKNK-SVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ R + + ++ K SV A GK
Sbjct: 411 AQRKAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRSDPALVQDVFGEETETTKQSVLAAGK 470
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++ +K P++A+AE+ K+EYE K Y
Sbjct: 471 -----WRSMTDDEKRPFLAQAEQEKLEYESARKRY 500
>gi|24657271|ref|NP_726106.1| HMG protein Z, isoform A [Drosophila melanogaster]
gi|24657274|ref|NP_726107.1| HMG protein Z, isoform B [Drosophila melanogaster]
gi|194882002|ref|XP_001975102.1| GG20749 [Drosophila erecta]
gi|195346531|ref|XP_002039811.1| GM15692 [Drosophila sechellia]
gi|195486382|ref|XP_002091485.1| HmgZ [Drosophila yakuba]
gi|195585528|ref|XP_002082533.1| GD25171 [Drosophila simulans]
gi|729741|sp|Q06943.1|HMGZ_DROME RecName: Full=High mobility group protein Z; Short=HMG-Z
gi|296945|emb|CAA50469.1| Hmg-Z protein [Drosophila melanogaster]
gi|7291329|gb|AAF46758.1| HMG protein Z, isoform A [Drosophila melanogaster]
gi|21064429|gb|AAM29444.1| RE28596p [Drosophila melanogaster]
gi|21645314|gb|AAM70934.1| HMG protein Z, isoform B [Drosophila melanogaster]
gi|190658289|gb|EDV55502.1| GG20749 [Drosophila erecta]
gi|194135160|gb|EDW56676.1| GM15692 [Drosophila sechellia]
gi|194177586|gb|EDW91197.1| HmgZ [Drosophila yakuba]
gi|194194542|gb|EDX08118.1| GD25171 [Drosophila simulans]
gi|220948296|gb|ACL86691.1| HmgZ-PA [synthetic construct]
Length = 111
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+ + DK + KA K
Sbjct: 4 DRPKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKTEWEQKAIKM 60
Query: 96 KVEYEKDMKNY 106
K EY K +K Y
Sbjct: 61 KEEYNKAVKEY 71
>gi|410928771|ref|XP_003977773.1| PREDICTED: TOX high mobility group box family member 4-B-like
[Takifugu rubripes]
Length = 684
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 2 KGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP 61
+GG +S A LSV P G K G+ KDPN+P++P SA+ +F + + K +P
Sbjct: 269 RGGAKQS----APLSV---PGVVGNKKGRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNP 321
Query: 62 KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEE 121
+ S V K W S++E K Y K E K EY K + Y Q +E E
Sbjct: 322 -SASFGEVSKIVASMWDSLAEEQKQVYKRKTEAAKKEYLKALAAYKANQLSQPITDEMEA 380
Query: 122 SEKSMSEV 129
+ S +++
Sbjct: 381 APSSPTQM 388
>gi|358337868|dbj|GAA37121.2| high mobility group protein B1, partial [Clonorchis sinensis]
Length = 378
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP PKR SAFF F + FR + + +HP K V+ + K G +W+ + DK Y
Sbjct: 99 TKDPAMPKRSWSAFFFFCDAFRSKIRNEHPDWK-VSDIAKELGRRWEECT--DKEKYERH 155
Query: 92 AEKRKVEYEKDMKNYNRRQAEGTK---PEEEEESEKSMSEVNDEDDDEEGSGEED 143
A+ K+ YE+DM+ Y TK EE+E+ E S V D + + D
Sbjct: 156 AQNDKLRYEQDMQKYKAGIYVATKRARVEEDEDIEPSCVTVAPGDSHRQANDTTD 210
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KD N+PK P SA+ F++ RE+++K HP +N + K EKWK MS + +
Sbjct: 9 VKDKNRPKHPMSAYACFVQVIREEHRKKHPNENVIFSEFSKKCAEKWKQMSNEQRRCFEE 68
Query: 91 KAEKRKVEYEKDMKNYNRRQAEGTKP 116
A + D+ +NR A P
Sbjct: 69 MA-------KLDLDRFNREMAHYVPP 87
>gi|68063985|ref|XP_673987.1| high mobility group protein [Plasmodium berghei strain ANKA]
gi|56492229|emb|CAH99818.1| high mobility group protein, putative [Plasmodium berghei]
Length = 96
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFR-EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP+ PKR SA+ F +E R E +D +K VA VGK GE W + E +KAPY K
Sbjct: 16 KDPHAPKRSLSAYMFFAKEKRAEIITRDPSLSKDVATVGKMIGEAWNKLDEREKAPYEKK 75
Query: 92 AEKRKVEYEKDMKNY 106
A++ K+ YEK+ Y
Sbjct: 76 AQEDKIRYEKEKMEY 90
>gi|332254661|ref|XP_003276450.1| PREDICTED: high mobility group protein B4 [Nomascus leucogenys]
Length = 189
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA GE W + ++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGEMWSTTTDL 137
Query: 84 DKAPYVAKAEKRKVEYEKDMKNY 106
+K PY +A + +Y ++++ Y
Sbjct: 138 EKHPYEQRAALLRAKYFEELELY 160
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAA--VGKAGGEKWKSMSEADKAPYVAKAEK 94
KPK S++ F+ +R +K+ P N V + E+W+S+S+ +KA Y A A+
Sbjct: 8 KPKANVSSYVHFLLNYRNTFKEQQP-NTYVGFKEFSRKCSEEWRSISKHEKAKYEALAKV 66
Query: 95 RKVEYEKDMKNY 106
K Y+++M NY
Sbjct: 67 DKARYQEEMMNY 78
>gi|354543436|emb|CCE40155.1| hypothetical protein CPAR2_101930 [Candida parapsilosis]
Length = 315
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 11/101 (10%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEE----FREQYKKDHPKNKSVAA 68
+ + VN AK+ + +DP+ PKRP +A+ +F E+ R+Q ++D P+N +
Sbjct: 146 STIPVNPALAKSAKH-----RDPDLPKRPTNAYLLFCEQEKERLRQQQQED-PENNT-RD 198
Query: 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
+ KA E WK +SE DK P+ E+ ++ Y+K+M Y ++
Sbjct: 199 LSKAMTEAWKKLSEEDKQPFYKLYEEDRIRYQKEMVEYTKK 239
>gi|968888|dbj|BAA09924.1| HMG-1 [Homo sapiens]
Length = 215
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
EK K +YEKD+ Y
Sbjct: 149 EKLKEKYEKDIAAY 162
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+R S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRRKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|45383524|ref|NP_989640.1| transcription factor SOX-18 [Gallus gallus]
gi|14625028|gb|AAK71352.1|AF302936_1 transcription factor SOX18 [Gallus gallus]
Length = 418
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
AGR GKA +D ++ +RP +AF V+ ++ R++ + +P + A + K G+ WK++S +
Sbjct: 87 AGRAEGKAGED-SRIRRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGQSWKALSAS 144
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRR 109
DK P+V +AE+ ++++ +D NY R
Sbjct: 145 DKRPFVEEAERLRIQHLQDHPNYKYR 170
>gi|403419540|emb|CCM06240.1| predicted protein [Fibroporia radiculosa]
Length = 763
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR-------EQYKKDHPKNK-SVAAVGK 71
A R++GK+ KDPN PK+P SA+F+F++ R E + + K SV A GK
Sbjct: 616 AQRRAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRSDPELVKEVFGDESETTKQSVLAAGK 675
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 114
W+SM++ ++ P++A+AE+ K+EYE K Y EGT
Sbjct: 676 -----WRSMTDEERKPFLAQAEQEKLEYESARKLYE----EGT 709
>gi|290986470|ref|XP_002675947.1| predicted protein [Naegleria gruberi]
gi|284089546|gb|EFC43203.1| predicted protein [Naegleria gruberi]
Length = 215
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D N PKRP S++ +F + +R+ ++P K V V K GEKW M++A+KAPYV KA
Sbjct: 116 DENAPKRPLSSYMLFSQTYRKSLVAENPTLK-VTEVAKLVGEKWGKMNDAEKAPYVNKAA 174
Query: 94 KRKVEYEKDMKNYNRRQ 110
+ K Y + Y+ Q
Sbjct: 175 ELKAAYNIEKSKYDATQ 191
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN--KSVAAVGKAGGEKWKSMS 81
AG+KS K KDPN PKRP + FF+F +E RE+ K + KS + V K GE+W ++
Sbjct: 2 AGKKSSKK-KDPNAPKRPKTGFFLFCDERREKVKATLGEGEKKSASEVSKLLGEEWGKLT 60
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNYNR 108
+++K Y + ++K Y+K + Y +
Sbjct: 61 DSEKDKYNSVSKKNMEVYKKQFEEYKK 87
>gi|195431780|ref|XP_002063906.1| GK15658 [Drosophila willistoni]
gi|194159991|gb|EDW74892.1| GK15658 [Drosophila willistoni]
Length = 112
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
+PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+ + DK + KA K+K
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKTEWEQKAIKQK 61
Query: 97 VEYEKDMKNY 106
EY K +K Y
Sbjct: 62 EEYNKAVKEY 71
>gi|349576469|dbj|GAA21640.1| K7_Nhp6bp [Saccharomyces cerevisiae Kyokai no. 7]
Length = 99
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GEKWK
Sbjct: 8 KQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENP-DVTFGQVGRILGEKWK 66
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111
+++ +K PY +KA+ K YE + + YN +A
Sbjct: 67 ALTAEEKQPYESKAQADKKRYESEKELYNATRA 99
>gi|440896783|gb|ELR48616.1| High mobility group protein B1, partial [Bos grunniens mutus]
Length = 165
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDP+ PKR SAFF+F E+ + K DHP S+ V K GE W + + DK PY KA
Sbjct: 80 KDPSTPKRDPSAFFLFCSEYCPKVKHDHP-GLSIGDVAKKLGETWNNTAADDKQPYEKKA 138
Query: 93 EKRKVEYEKDM 103
K K +YEKD+
Sbjct: 139 AKLKEKYEKDI 149
>gi|380025634|ref|XP_003696574.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Apis florea]
Length = 202
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W S K
Sbjct: 108 RRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPE-MGVGDIAKELGKLWMSTDLQTK 166
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEE 118
+ Y+A AE+ + YE+++ YN+R + PEE
Sbjct: 167 SKYMAIAEEDRARYEREIIAYNKR-VKNYDPEE 198
>gi|366998295|ref|XP_003683884.1| hypothetical protein TPHA_0A03740 [Tetrapisispora phaffii CBS 4417]
gi|357522179|emb|CCE61450.1| hypothetical protein TPHA_0A03740 [Tetrapisispora phaffii CBS 4417]
Length = 93
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ K ++P + S VG+ GEKWK+++ +K P+ AKAE
Sbjct: 17 DPNAPKRALSAYMFFANETRDIVKAENP-DVSFGQVGRILGEKWKALTAEEKIPFEAKAE 75
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YE + YN +A
Sbjct: 76 ADKKRYESEKALYNATKA 93
>gi|397482786|ref|XP_003812597.1| PREDICTED: high mobility group protein B4 [Pan paniscus]
Length = 177
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W ++++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTVTDL 137
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
+K PY +A + +Y ++++ Y R+Q K
Sbjct: 138 EKHPYEQRAALLRAKYFEELELY-RKQCNARK 168
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAA--VGKAGGEKWKSMSEADKAPYVAKAEK 94
KPK S++ F+ +R ++K+ P N V + EKW+S+S+ +KA Y A A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQP-NTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKL 66
Query: 95 RKVEYEKDMKNY 106
K Y+++M NY
Sbjct: 67 DKARYQEEMMNY 78
>gi|94966915|ref|NP_001035652.1| high mobility group protein B4 [Bos taurus]
gi|119370723|sp|Q32L34.1|HMGB4_BOVIN RecName: Full=High mobility group protein B4
gi|81673105|gb|AAI09791.1| High-mobility group box 4 [Bos taurus]
gi|296488916|tpg|DAA31029.1| TPA: high mobility group protein B4 [Bos taurus]
Length = 194
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
GR+ + +DP+ P+RP S+F +F ++ Q K ++P + SV V KA G+ W + ++ D
Sbjct: 80 GRRKKRRKRDPHAPRRPPSSFLLFCQDHYAQLKSENP-SWSVVQVAKASGKMWSAKTDVD 138
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVND-EDDDEEGSG 140
K PY +A + +Y +++ Y R Q K +E + E E D +GS
Sbjct: 139 KQPYEQRAALLRAKYREELSVY-RNQFNARKTCLQESATNQCREFEQAESDTTDGSN 194
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAK 91
+D KPK S++ F+ +R ++K+ P + EKW+S+S+ +KA Y A
Sbjct: 4 RDQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEAL 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ K Y+++M NY
Sbjct: 64 AKLDKARYQEEMMNY 78
>gi|348680492|gb|EGZ20308.1| hypothetical protein PHYSODRAFT_285400 [Phytophthora sojae]
Length = 211
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P+ K + KDPN PKR SA+F F + R++ + ++P NK + + E+W+++
Sbjct: 96 PSFETTKGSRKKKDPNAPKRALSAYFFFCNDIRQEVRDENP-NKKITEIATLLAERWRAL 154
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYN 107
+ +A Y E+ KV+Y++ M YN
Sbjct: 155 PDKKRAKYQKMHEEAKVKYQQQMDAYN 181
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY--VA 90
KD N PKR SAF F + RE KK+ P+ + + G +WK +S+ ++ PY +A
Sbjct: 20 KDKNAPKRALSAFMFFSNDIRETVKKEMPE-LAFLQISSEIGRRWKKISDEERRPYDELA 78
Query: 91 KAEKRKVEYEKD 102
A+KR+ + EK+
Sbjct: 79 AADKRRYQEEKE 90
>gi|110287688|sp|Q4PBZ9.2|NHP6_USTMA RecName: Full=Non-histone chromosomal protein 6
Length = 99
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+++ KA KDP+ PKRP SA+ F ++ RE+ K +P+ VG+ G KWK MSEA+K
Sbjct: 16 KRTTKAKKDPDAPKRPLSAYMFFSQDQRERVKNANPE-AGFGEVGRLLGAKWKEMSEAEK 74
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQ 110
PY A + K E + YN+R+
Sbjct: 75 KPYNDMANRDKARAEAEKAAYNKRR 99
>gi|50548527|ref|XP_501733.1| YALI0C11671p [Yarrowia lipolytica]
gi|74635076|sp|Q6CC79.1|NHP6_YARLI RecName: Full=Non-histone chromosomal protein 6
gi|49647600|emb|CAG82043.1| YALI0C11671p [Yarrowia lipolytica CLIB122]
Length = 103
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F + R+ + D+P + VGKA GEKWK++++A+K PY KA
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRADNP-GIAFGQVGKALGEKWKTLTDAEKVPYEEKAT 79
Query: 94 KRKVEYEKDMKNYNRRQAE 112
K YE + Y AE
Sbjct: 80 ADKKRYEDEKAAYKANAAE 98
>gi|403267260|ref|XP_003925762.1| PREDICTED: uncharacterized protein LOC101050525 [Saimiri
boliviensis boliviensis]
Length = 645
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKRP S FF+F EFR + K +P S+ V K GE+ ++S++ K P + KA
Sbjct: 242 DPDAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKRLGERRNNLSDSGKQPSITKAA 300
Query: 94 KRKVEYEKDMKNYNRR 109
K K E+D Y +
Sbjct: 301 KLKERNEEDGAEYKSK 316
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYV 89
A DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ +
Sbjct: 158 ARGDPKKPKGKVSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSRKEKSTFD 217
Query: 90 AKAEKRKVEYEKDM 103
+ KV Y+++M
Sbjct: 218 EMTKVDKVRYDQEM 231
>gi|328856362|gb|EGG05484.1| hypothetical protein MELLADRAFT_31192 [Melampsora larici-populina
98AG31]
Length = 82
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ F +++RE+ K ++P+ S +G+ G KWKS+ E +K PY
Sbjct: 5 KREKDPNAPKRPLSAYMFFSQDWRERIKTENPEV-SFGEIGRLLGLKWKSLGEEEKKPYE 63
Query: 90 AKAEKRKVEYEKDMKNYNR 108
A + K +E + Y R
Sbjct: 64 DMACRDKKRHETEKAEYER 82
>gi|297302803|ref|XP_001082943.2| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 169
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP S+FF+F E+R + K +HP V K GE W + + DK PY KA
Sbjct: 50 KDPNVPKRPPSSFFLFCSEYRPKTKGEHP-GLPFDDVAKNLGETWNNTAAGDKQPYEKKA 108
Query: 93 EKRKVEYEKDMKNY 106
K K +YE+D Y
Sbjct: 109 AKLKAKYERDTAAY 122
>gi|383858168|ref|XP_003704574.1| PREDICTED: putative high mobility group protein 1-like 10-like
[Megachile rotundata]
Length = 202
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W S K
Sbjct: 108 RRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPE-MGVGDIAKELGKLWMSTDLQTK 166
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEE 118
+ Y+A AE+ + YE+++ YN+R + PEE
Sbjct: 167 SKYMAIAEEDRARYEREIIAYNKR-VKNYDPEE 198
>gi|332808386|ref|XP_513298.3| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4 [Pan
troglodytes]
Length = 186
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W ++++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTVTDL 137
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
+K PY +A + +Y ++++ Y R+Q K
Sbjct: 138 EKHPYEQRAALLRAKYFEELELY-RKQCNARK 168
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAA--VGKAGGEKWKSMSEADKAPYVAKAEK 94
KPK S++ F+ +R ++K+ P N V + EKW+S+S+ +KA Y A A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQP-NTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKL 66
Query: 95 RKVEYEKDMKNY 106
K Y+++M NY
Sbjct: 67 DKARYQEEMMNY 78
>gi|328790254|ref|XP_624266.2| PREDICTED: putative high mobility group protein B1-like 1-like
[Apis mellifera]
Length = 202
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W S K
Sbjct: 108 RRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPE-MGVGDIAKELGKLWMSTDLQTK 166
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEE 118
+ Y+A AE+ + YE+++ YN+R + PEE
Sbjct: 167 SKYMAIAEEDRARYEREIIAYNKR-VKNYDPEE 198
>gi|115396468|ref|XP_001213873.1| nonhistone chromosomal protein 6A [Aspergillus terreus NIH2624]
gi|114193442|gb|EAU35142.1| nonhistone chromosomal protein 6A [Aspergillus terreus NIH2624]
Length = 101
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R++ ++++P + VGK GEKWK++SE D+ PY KA
Sbjct: 19 DPNAPKRGLSAYMFFANENRDKVREENP-GITFGQVGKMLGEKWKALSEDDRRPYEEKAA 77
Query: 94 KRKVEYEKDMKNYN 107
K YE + +YN
Sbjct: 78 ADKKRYEDEKASYN 91
>gi|345780695|ref|XP_851529.2| PREDICTED: high mobility group protein B4 [Canis lupus familiaris]
Length = 193
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G+K + +DP P+RP S+F +F ++ Q K+++P SV V KA G W S A
Sbjct: 81 VGKKKKRRKRDPQAPRRPPSSFLIFCQDHYAQLKRENP-TWSVVQVAKASGRMWSVTSGA 139
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
+K PY +A + Y+++++ Y RQ T+
Sbjct: 140 EKQPYEQRAAVLRARYQEELEVY--RQQRNTR 169
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+PK S++ F+ +R ++K+ P + EKW+S+S+ +KA Y A A+
Sbjct: 10 RPKVNVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 96 KVEYEKDMKNY 106
K Y+++M NY
Sbjct: 70 KARYQEEMMNY 80
>gi|196010223|ref|XP_002114976.1| hypothetical protein TRIADDRAFT_64155 [Trichoplax adhaerens]
gi|190582359|gb|EDV22432.1| hypothetical protein TRIADDRAFT_64155 [Trichoplax adhaerens]
Length = 694
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KPAK K A+DPN PKRP S + +++++ R++ K ++P + +VA V K GE WKS
Sbjct: 541 KPAK----KVKNARDPNLPKRPLSGYMLWLQKQRDRIKNENP-SFTVAEVAKKAGEIWKS 595
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYN 107
+ E +K + ++ K K +Y KDM YN
Sbjct: 596 LKEEEKKKWNNESAKLKEQYNKDMAEYN 623
>gi|226530710|ref|NP_001144208.1| hypothetical protein [Zea mays]
gi|195638446|gb|ACG38691.1| hypothetical protein [Zea mays]
gi|413936487|gb|AFW71038.1| hypothetical protein ZEAMMB73_874920 [Zea mays]
Length = 487
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
+P SA+FV+ +E R + K+V +GK GE+WK+M+E +APY A K+K EY
Sbjct: 289 QPMSAYFVYSQERRATLVAE---KKNVPEIGKITGEEWKNMTEGQRAPYEEVARKQKEEY 345
Query: 100 EKDMKNYNRRQAEGTKPEEEEESE 123
K M+ Y +++AE E+EE E
Sbjct: 346 HKQMEVYKQKKAEEAASLEKEEQE 369
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPN+PKRPAS+F +F +E R+Q ++ P N ++ A+ KWK +S ++ + AK
Sbjct: 408 DPNRPKRPASSFLLFSKEERKQLIEERPGINNSTLNALITV---KWKELSGEERQAWNAK 464
Query: 92 AEKRKVEYEKDMKNYNRRQA 111
A Y+K+M+ Y + Q+
Sbjct: 465 AAPAMAAYKKEMEEYTKAQS 484
>gi|342319487|gb|EGU11435.1| Non-histone chromosomal protein [Rhodotorula glutinis ATCC 204091]
Length = 142
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP------KNKSVAAVGKAGGEKWKSMSE 82
G+A KDPN PKRP SA+ F ++ R K+++P +S+ +GK G KWK + E
Sbjct: 16 GRAKKDPNAPKRPLSAYMHFSQDQRSVVKEENPDVTFVGHCESIGEIGKILGAKWKELPE 75
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYN 107
++ PY KA K YEK+ Y+
Sbjct: 76 DERKPYEEKASADKSRYEKEKAAYD 100
>gi|347441690|emb|CCD34611.1| similar to transcription factor HMG [Botryotinia fuckeliana]
Length = 101
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E + PY A
Sbjct: 20 DPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNEKQRGPYEESAA 78
Query: 94 KRKVEYEKDMKNYN 107
K K YE++ NYN
Sbjct: 79 KDKKRYEEEKANYN 92
>gi|121705796|ref|XP_001271161.1| nucleosome binding protein (Nhp6a), putative [Aspergillus clavatus
NRRL 1]
gi|119399307|gb|EAW09735.1| nucleosome binding protein (Nhp6a), putative [Aspergillus clavatus
NRRL 1]
Length = 104
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F + R++ ++++P S VGK GE+WK++S++++ PY KA
Sbjct: 20 KDPNAPKRGLSAYMFFANDNRDKVREENP-GISFGQVGKMLGERWKALSDSERRPYEEKA 78
Query: 93 EKRKVEYEKDMKNYNRRQAE 112
K YE + +YN Q E
Sbjct: 79 ATDKKRYEDEKASYNAAQEE 98
>gi|145356938|ref|XP_001422680.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582923|gb|ABP00997.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 622
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F R + +P + V V KA GEKWK++++ +K+ Y
Sbjct: 515 RAKKDPNAPKRGLSAYMFFSAAKRAEITAANP-SFGVTDVAKALGEKWKTITDEEKSVYQ 573
Query: 90 AKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
+A++ K+ YE++M+ Y +A G++P+ E
Sbjct: 574 QQADEDKIRYEREMEAY---RAGGSQPKVE 600
>gi|402221853|gb|EJU01921.1| HMG-box [Dacryopinax sp. DJM-731 SS1]
Length = 128
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
GK KDPN PK S + +F ++ RE+ KK+ + + + + WK++SE DK PY
Sbjct: 43 GKKEKDPNAPKGAKSPYIIFCQDNREEAKKEAENTREIMRIL---ADMWKNLSEQDKEPY 99
Query: 89 VAKAEKRKVEYEKDMKNY 106
AK++K K +E++MK Y
Sbjct: 100 KAKSQKDKTRFEREMKAY 117
>gi|67983563|ref|XP_669154.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56482946|emb|CAH96342.1| hypothetical protein PB000724.01.0 [Plasmodium berghei]
Length = 108
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP PKR SA+ ++++ R + ++ P+ K VA VGK GE W ++ A KAPY KA
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIQERPELAKEVAQVGKLIGEAWGQLTPAQKAPYEKKA 79
Query: 93 EKRKVEYEKDMKNYNRRQAEG 113
E KV Y K++K + EG
Sbjct: 80 ELDKVRYSKEIKLIDTVDLEG 100
>gi|340711910|ref|XP_003394509.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Bombus terrestris]
gi|350402612|ref|XP_003486543.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Bombus impatiens]
Length = 202
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W S K
Sbjct: 108 RRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPE-MGVGDIAKELGKLWMSTDLQTK 166
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEE 118
+ Y+A AE+ + YE+++ YN+R + PEE
Sbjct: 167 SKYMAIAEEDRARYEREIIAYNKR-VKNYDPEE 198
>gi|388857490|emb|CCF48846.1| uncharacterized protein [Ustilago hordei]
Length = 292
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K G K +DP KPKRP SAFF F+ + R + ++ K GGE+WK M+
Sbjct: 205 KKGIKGTAFLRDPAKPKRPNSAFFEFLNDLRAR----ETVIPNITEFSKRGGERWKQMAP 260
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYN 107
KAPY +A +Y++D++ YN
Sbjct: 261 EQKAPYEQRALHALEQYKRDLEIYN 285
>gi|256090348|ref|XP_002581158.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
gi|350646061|emb|CCD59339.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
Length = 293
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP+ PKR SAFF F + FR + + +HP K V+ + K G +W+ S DK Y +
Sbjct: 93 IKDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECS--DKEKYERR 149
Query: 92 AEKRKVEYEKDMKNY 106
A+ K+ YE+DM+ Y
Sbjct: 150 AQNDKLRYEQDMEKY 164
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KD N+PK P + + F++ RE+++K HP N + K EKWK M+ + +
Sbjct: 3 VKDKNRPKPPMTPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMNMEQRKCFEE 62
Query: 91 KAEKRKVEYEKDMKNY 106
A+ + ++M +Y
Sbjct: 63 MAKLDTERFNREMAHY 78
>gi|82658290|ref|NP_001032501.1| high mobility group protein B2 [Danio rerio]
gi|81294190|gb|AAI07992.1| Zgc:123215 [Danio rerio]
Length = 213
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query: 34 DPNKPKRPASAFF-VFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPN PKRP SAFF F + R + K D+P S+ + K GE W +S +K+PY KA
Sbjct: 91 DPNAPKRPPSAFFV-FCSDHRPKVKGDNP-GISIGDIAKKLGEMWSKLSPKEKSPYEQKA 148
Query: 93 EKRKVEYEKDMKNYNRRQAEGTKPE 117
K K +YEKD+ Y +A+G KP+
Sbjct: 149 MKLKEKYEKDVAAY---RAKGVKPD 170
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDPNKP+ S++ F++ RE++KK +P + + + K E+W++MS +K +
Sbjct: 2 GKDPNKPRGKTSSYAFFVQTCREEHKKKNPGTSVNFSEFSKKCSERWRTMSSKEKGKFEE 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV Y+++MKNY
Sbjct: 62 MAKTDKVRYDREMKNY 77
>gi|71416266|ref|XP_810170.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70874664|gb|EAN88319.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 26 RKSGKA-AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
R GK AKD N PKR SA+F F+ +FR K HP + SV KA G WK +S+
Sbjct: 192 RGGGKVKAKDENAPKRSMSAYFFFVSDFR----KKHP-DLSVTETSKAAGAAWKELSDEM 246
Query: 85 KAPYVAKAEKRKVEYEKDM 103
K PY A A+K K Y+++M
Sbjct: 247 KKPYEAMAQKDKERYQREM 265
>gi|148226156|ref|NP_001084164.1| FACT complex subunit SSRP1 [Xenopus laevis]
gi|82175412|sp|Q9W602.1|SSRP1_XENLA RecName: Full=FACT complex subunit SSRP1; AltName: Full=DNA
unwinding factor 87 kDa subunit; Short=DUF87; AltName:
Full=Facilitates chromatin transcription complex subunit
ssrp1; AltName: Full=Structure-specific recognition
protein 1
gi|4586285|dbj|BAA76333.1| DUF87 [Xenopus laevis]
Length = 693
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP K + K KDP PKRP SA+ +++ RE+ K ++P S+ + K GE WK
Sbjct: 524 KKPRK--KPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWK 580
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
+MS K + +AE+ K +YEK MK YN
Sbjct: 581 NMSRDKKEEWDRRAEEAKRDYEKAMKEYN 609
>gi|75218951|sp|O04235.1|SSRP1_VICFA RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein 1
gi|2104679|emb|CAA66480.1| transcription factor [Vicia faba var. minor]
Length = 642
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR S F F + RE KK +P S VG+ GEKWK++S +K PY AKA+
Sbjct: 554 DPNAPKRALSGFMFFSQMERENLKKTNP-GISFTDVGRVLGEKWKNLSAEEKEPYEAKAQ 612
Query: 94 KRKVEYEKDMKNYNRRQ 110
K Y+ ++ Y Q
Sbjct: 613 ADKKRYKDEISGYKNPQ 629
>gi|355757722|gb|EHH61247.1| hypothetical protein EGM_19210, partial [Macaca fascicularis]
Length = 185
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K D N KRP S FF+F EF HPK KS G + G+ K +
Sbjct: 80 PAKGGKKKN----DSNTFKRPPSGFFLFCSEF-------HPKIKSTNP-GISIGDVTKKL 127
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
E +K PY+ KA K K EYEKD+ Y
Sbjct: 128 GEIEKQPYIIKAAKLKEEYEKDVAEY 153
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K K SA+ F++ RE++KK +P+ + A K +WK+MS +K+ + A
Sbjct: 5 DPKKLKGKVSAYAFFVQMCREEHKKKYPEVPVNFAEFSKKCSRRWKTMSRKEKSKFDELA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV Y+++MK+Y
Sbjct: 65 KTDKVHYDQEMKDY 78
>gi|339242839|ref|XP_003377345.1| high mobility group protein 1.2 [Trichinella spiralis]
gi|316973861|gb|EFV57410.1| high mobility group protein 1.2 [Trichinella spiralis]
Length = 229
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK ++ KDPN PKR SAFF F R + ++ HP K V V + G WK++ E +K
Sbjct: 112 RKRKRSKKDPNAPKRALSAFFFFSNSKRAEIQQAHPDWK-VGQVAQELGRMWKAIDEDEK 170
Query: 86 APYVAKAEKRKVEYEKDMKNY 106
+ A K + YE+DMKNY
Sbjct: 171 RKFEDMAAKDRTRYEEDMKNY 191
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
++ KP+ + + F++ E++KK +P +N V V K KWK+M++ +K +
Sbjct: 31 VREAGKPRGKTTPYGFFVKMCYEEHKKKYPNENVQVTEVSKKCSAKWKTMTQEEKHRFYE 90
Query: 91 KAEKRKVEYEKDMKNY 106
A K +V Y+ +++ Y
Sbjct: 91 LAAKDRVRYDAELEAY 106
>gi|302755040|ref|XP_002960944.1| hypothetical protein SELMODRAFT_73858 [Selaginella moellendorffii]
gi|300171883|gb|EFJ38483.1| hypothetical protein SELMODRAFT_73858 [Selaginella moellendorffii]
Length = 457
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDP KPKRP + + + EE R + N V +GK GE+W+SM E +APY A
Sbjct: 245 KDPEKPKRPTTGYMAYSEERRPALMNE---NLKVPQIGKILGEEWRSMDEKARAPYEKIA 301
Query: 93 EKRKVEYEKDMKNYNRRQAE 112
K Y +M+ YN+++A+
Sbjct: 302 TDAKATYLTEMEAYNKKKAQ 321
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP + K+P S++F++ + RE+ + +P N + + GE WKS+SE +K PY +
Sbjct: 126 DPERIKKPLSSYFLWCNDQREKVRAQNP-NAGIKELSSIFGELWKSVSEEEKKPYEEIYQ 184
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDE 132
K K EY K + +R+AE K ++E++ K E+ D+
Sbjct: 185 KNKEEYLKQLVGKEKREAEALKLLQDEKNRKLSKEILDQ 223
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KA RK+ +P KPK+ A+A+ +F E+R++ + + P K A + KW M
Sbjct: 359 KAPRKAKAKTAEPGKPKKAATAYILFGMEYRKKLQAEMPTAK-FAELTALVASKWNEMGA 417
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYNR 108
+K PYV +A K++Y++ M+ + R
Sbjct: 418 EEKQPYVNQAGVEKLKYQEAMEEFKR 443
>gi|156101624|ref|XP_001616505.1| high mobility group protein [Plasmodium vivax Sal-1]
gi|148805379|gb|EDL46778.1| high mobility group protein, putative [Plasmodium vivax]
Length = 107
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFR-EQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
RK K KDP+ PKR SA+ F +E R E +D +K VA VGK GE W + E +
Sbjct: 19 RKRRKNKKDPHAPKRSLSAYMFFAKEKRAEIISRDPDLSKDVATVGKMIGEAWNKLDERE 78
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
KAPY KA++ K+ YE++ Y
Sbjct: 79 KAPYEKKAQEDKLRYEREKVEY 100
>gi|351708060|gb|EHB10979.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 241
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKR SAFF+F E+ + K ++P S+ V K GE W + + DK PY
Sbjct: 86 KKFKDPNAPKRLPSAFFLFCSEYHPKIKGEYP-GLSIGDVAKKLGEIWNNTAADDKQPYK 144
Query: 90 AKAEKRKVEYEKDMKNYNRRQAEG 113
KA K K +YEKD+ Y QA+G
Sbjct: 145 KKAAKLKEKYEKDITAY---QAKG 165
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S+ F++ RE++KK HP + + K E+WK+M +K +
Sbjct: 5 DPKKLRGKMSSHAFFVQTCREEHKKKHPNAFVNFSEFSKKCSERWKTMFAKEKGKFEDMT 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKAHYEREMKTY 78
>gi|148703464|gb|EDL35411.1| mCG50005 [Mus musculus]
Length = 206
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAAKDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 150 KLKEKYKKDIAAY 162
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ +F++ E++KK HP + + + K E+W +MS +K + A
Sbjct: 5 DPKKPRGKMSSYALFVKTCWEEHKKKHPDASVNFSGFSKKCSERWNTMSAKEKGKFEGMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|340383933|ref|XP_003390470.1| PREDICTED: FACT complex subunit SSRP1-like, partial [Amphimedon
queenslandica]
Length = 410
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PK+P S++ ++++E R KK HP+ S+ + K G+ WK + DK+ + KA+
Sbjct: 277 DPNCPKKPLSSYMLWLQEMRPSLKKKHPE-LSITEMSKKAGQLWKELK--DKSKWEEKAK 333
Query: 94 KRKVEYEKDMKNYNR 108
K K +Y DMK Y R
Sbjct: 334 KLKEQYLIDMKEYER 348
>gi|297303892|ref|XP_002806292.1| PREDICTED: high mobility group-T protein-like [Macaca mulatta]
Length = 159
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E + K +HP SV+ V K GE W +E DK PY KA
Sbjct: 55 KDPNAPKRPPLAFFMFSSEDCPKIK-EHP-GLSVSDVAKKLGEMWNYTAEDDKHPYEKKA 112
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ +
Sbjct: 113 VKLKEKYEKDIAAF 126
>gi|444729306|gb|ELW69730.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E+ + + +HP + V K GE W + + D PY KA
Sbjct: 39 KDPNAPKRPPLAFFLFCSEYHPKIRGEHP-GLYIGDVAKKLGEMWTNTAADDTQPYEKKA 97
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 98 AKLKEKYEKDIAAY 111
>gi|170091612|ref|XP_001877028.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648521|gb|EDR12764.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 564
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEF-------REQYKKDHPKNK-SVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ RE + ++ K SV A
Sbjct: 427 AQRKAGKSRKSNIKDPNAPKKPLSAYFMFLQRIRANPQLVREIFGEETETTKQSVLAAA- 485
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
KW+SM++ ++ P++A+AE+ K+EYE + Y
Sbjct: 486 ----KWRSMTDGERQPFLAQAEQEKMEYEAARRLY 516
>gi|289741165|gb|ADD19330.1| high mobility group protein D [Glossina morsitans morsitans]
gi|289741169|gb|ADD19332.1| nucleosome-binding factor SPN POB3 subunit [Glossina morsitans
morsitans]
Length = 111
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
+PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+++ DK + KA K K
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKDNPGSK-VTDIAKRGGELWRAIK--DKTEWEQKAVKMK 61
Query: 97 VEYEKDMKNY 106
EY K +K Y
Sbjct: 62 EEYNKAVKEY 71
>gi|124805429|ref|XP_001350438.1| high mobility group protein [Plasmodium falciparum 3D7]
gi|6525222|gb|AAF15357.1|AF201952_1 high mobility group protein [Plasmodium falciparum]
gi|23496560|gb|AAN36118.1|AE014844_29 high mobility group protein [Plasmodium falciparum 3D7]
Length = 97
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEAD 84
RK K KDP+ PKR SA+ F +E R + P+ +K VA VGK GE W + E +
Sbjct: 9 RKRRKNKKDPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKE 68
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
KAP+ KA++ K+ YEK+ Y
Sbjct: 69 KAPFEKKAQEDKLRYEKEKAEY 90
>gi|432104603|gb|ELK31215.1| High mobility group protein B1 [Myotis davidii]
Length = 201
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN+PKRP SAFF+F E+ + K +HP S+ + + GE W + + DK P+ KA
Sbjct: 90 KDPNEPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDIAEKLGEMWNNTAADDKQPHEKKA 148
Query: 93 EKRKVEYEKDM 103
K K +YEKD+
Sbjct: 149 AKLKEKYEKDI 159
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S+ F++ + +++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKTSSCAFFVQTYWDEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MK Y
Sbjct: 65 KADKARYKREMKTY 78
>gi|157831385|pdb|1HSM|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
gi|157831386|pdb|1HSN|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
Length = 79
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA K K
Sbjct: 3 PKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 61
Query: 98 EYEKDMKNY 106
+YEKD+ Y
Sbjct: 62 KYEKDIAAY 70
>gi|70946314|ref|XP_742884.1| high mobility group protein [Plasmodium chabaudi chabaudi]
gi|56522109|emb|CAH79930.1| high mobility group protein, putative [Plasmodium chabaudi
chabaudi]
Length = 102
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFR-EQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
+K K KDP+ PKR SA+ F +E R E +D +K VA VGK GE W + E +
Sbjct: 15 KKRRKNKKDPHAPKRSLSAYMFFAKEKRAEIITRDPSLSKDVATVGKMIGEAWNKLDERE 74
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
KAPY KA++ K+ YEK+ Y
Sbjct: 75 KAPYEKKAQEDKLRYEKEKMEY 96
>gi|124512426|ref|XP_001349346.1| high mobility group protein [Plasmodium falciparum 3D7]
gi|23499115|emb|CAD51195.1| high mobility group protein [Plasmodium falciparum 3D7]
Length = 99
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP PKR SA+ ++++ R + K+ P+ K VA VGK GE W +S A KAPY KA
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKA 79
Query: 93 EKRKVEYEKDMKNYNRRQAE 112
+ KV Y K+++ Y ++ E
Sbjct: 80 QLDKVRYSKEIEEYRKKNQE 99
>gi|1870104|emb|CAA85042.1| NHP6B [Saccharomyces cerevisiae]
Length = 99
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GE+WK
Sbjct: 8 KQPKEPKKRTTRRKKDPNAPKRRLSAYMFFANENRDIVRSENP-DVTFGQVGRILGERWK 66
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
+++ +K PY +KA+ K YE + + YN
Sbjct: 67 ALTAEEKQPYESKAQADKKRYESEKELYN 95
>gi|444518100|gb|ELV11958.1| High mobility group protein B1 [Tupaia chinensis]
Length = 162
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKRP SAFF+F E+R + K +HP + S+ V K GE W + + DK P KA K
Sbjct: 92 PNVPKRPPSAFFLFCSEYRPKIKGEHP-DLSIGDVEKKLGEVWNNAAADDKQPCEKKAAK 150
Query: 95 RKVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 151 LKEKYEKDIAAY 162
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE+++K HP + + E+WK+MS +K A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHRKKHPDALVDFSEFSQKCSERWKTMSAEEKGKLEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++M+ Y
Sbjct: 65 KVDKARYEREMRTY 78
>gi|339046261|ref|NP_009647.2| Nhp6bp [Saccharomyces cerevisiae S288c]
gi|341942236|sp|P11633.3|NHP6B_YEAST RecName: Full=Non-histone chromosomal protein 6B
gi|4036|emb|CAA33378.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45271022|gb|AAS56892.1| YBR089C-A [Saccharomyces cerevisiae]
gi|151946484|gb|EDN64706.1| nonhistone chromosomal protein [Saccharomyces cerevisiae YJM789]
gi|190408749|gb|EDV12014.1| 11 kDa nonhistone chromosomal protein [Saccharomyces cerevisiae
RM11-1a]
gi|256274037|gb|EEU08951.1| Nhp6bp [Saccharomyces cerevisiae JAY291]
gi|290878106|emb|CBK39165.1| Nhp6bp [Saccharomyces cerevisiae EC1118]
gi|333454471|tpg|DAA07210.2| TPA: Nhp6bp [Saccharomyces cerevisiae S288c]
Length = 99
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GE+WK
Sbjct: 8 KQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENP-DVTFGQVGRILGERWK 66
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111
+++ +K PY +KA+ K YE + + YN +A
Sbjct: 67 ALTAEEKQPYESKAQADKKRYESEKELYNATRA 99
>gi|27466905|gb|AAO12859.1| high mobility group protein [Branchiostoma belcheri tsingtauense]
Length = 164
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
V K A+ GR+ K KDPN PKR SAFF++ + R + + HP + V + K G++
Sbjct: 78 VPPKGAEGGRRKRKK-KDPNAPKRAMSAFFMYCADARPKVRAAHP-DFQVGDIAKILGKQ 135
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDM 103
WK +S++DKA Y KA+ + Y+K++
Sbjct: 136 WKEISDSDKAKYEKKAQTERARYQKEL 162
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAK 91
KD NKPK SA+ F++E R +++K +P + V + +WK+M++ +K +
Sbjct: 3 KDKNKPKGKMSAYACFVQECRREHEKKYPNKQVVFTEFSQKCASRWKTMNDDEKKRFQVL 62
Query: 92 AEKRKVEYEKDMKNY 106
AE K YE++M Y
Sbjct: 63 AEADKRRYEQNMAKY 77
>gi|158297853|ref|XP_318023.4| AGAP004791-PA [Anopheles gambiae str. PEST]
gi|158297857|ref|XP_001689081.1| AGAP004789-PA [Anopheles gambiae str. PEST]
gi|157014526|gb|EAA13138.4| AGAP004791-PA [Anopheles gambiae str. PEST]
gi|157014528|gb|EDO63498.1| AGAP004789-PA [Anopheles gambiae str. PEST]
Length = 324
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P +K KA KD N PK P + + +M E RE ++ HP N + V K E+W +
Sbjct: 57 PKTTKKKRQKAPKDANAPKHPLTGYVRYMNEHREGVRQKHP-NLTPIEVTKIMAEEWSKL 115
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
SE K PY+ AE K Y K++ Y
Sbjct: 116 SEERKKPYLEAAEVDKERYNKEISEY 141
>gi|444707322|gb|ELW48604.1| High mobility group protein B4 [Tupaia chinensis]
Length = 189
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
GR+ + +DP P+RP S+F +F ++ Q K+++P + +V V KA G+ W M+
Sbjct: 81 VGRRRKRRKRDPQAPRRPPSSFILFCQDHYAQLKRENP-SWTVVQVAKASGKMWTVMTAV 139
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNR-RQA 111
+K PY +A + Y+++++ Y + RQA
Sbjct: 140 EKQPYEQRAALLRARYQEELEVYRKQRQA 168
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+PK S++ F+ +R ++K+ P + EKWKS+S+ +KA Y A A+
Sbjct: 10 RPKVNVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWKSISKHEKAKYEALAKLD 69
Query: 96 KVEYEKDMKNY 106
K Y+++M NY
Sbjct: 70 KARYQEEMMNY 80
>gi|444720594|gb|ELW61376.1| High mobility group protein B3 [Tupaia chinensis]
Length = 124
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK------SVAAVGKAGGEKWKSM 80
K GK KD N PKRP S FF+F EF HPK K S+ V K GE W ++
Sbjct: 8 KEGKKKKDSNAPKRPPSGFFLFFSEF-------HPKIKSSNHGISIRDVAKTLGEMWNNL 60
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY-NRRQAEGTK 115
S++ K Y+ K K K EKD+ ++ ++ + GTK
Sbjct: 61 SDSKKQSYITKPAKLKERDEKDVTDFKSKGKFNGTK 96
>gi|289741167|gb|ADD19331.1| high mobility group protein D [Glossina morsitans morsitans]
Length = 111
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
+PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+++ DK + KA K K
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKDNPGSK-VTDIAKRGGELWRAIK--DKTEWEQKAVKMK 61
Query: 97 VEYEKDMKNY 106
EY K +K Y
Sbjct: 62 EEYNKAVKEY 71
>gi|254580675|ref|XP_002496323.1| ZYRO0C15752p [Zygosaccharomyces rouxii]
gi|238939214|emb|CAR27390.1| ZYRO0C15752p [Zygosaccharomyces rouxii]
Length = 98
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VG+ GEKWK+++ +K PY AKAE
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRAENP-DVTFGQVGRILGEKWKALTPDEKTPYEAKAE 75
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YE + + YN +A
Sbjct: 76 ADKKRYESEKELYNATRA 93
>gi|97976795|tpe|CAJ29302.1| TPA: putative high mobility group B3 protein [Schistosoma mansoni]
Length = 246
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP+ PKR SAFF F + FR + + +HP K V+ + K G +W+ S DK Y +
Sbjct: 93 IKDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECS--DKEKYERR 149
Query: 92 AEKRKVEYEKDMKNYNRRQAEGTKPE---EEEESEKSMSEVNDEDDDEE 137
A+ K+ YE+DM+ Y TK ++ +S + +S ++D+ +E
Sbjct: 150 AQNDKLRYEQDMEKYKAGLYVATKRARVGDQTKSNEILSCLHDQSHHKE 198
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KD N+PK P + + F++ RE+++K HP N + K EKWK M+ + +
Sbjct: 3 VKDKNRPKPPMTPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMNMEQRKCFEE 62
Query: 91 KAEKRKVEYEKDMKNY 106
A+ + ++M +Y
Sbjct: 63 MAKLDTERFNREMAHY 78
>gi|401885246|gb|EJT49369.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 2479]
gi|406694772|gb|EKC98094.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 8904]
Length = 108
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 7/76 (9%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+KK AK G+K DPNKPKR SA+ F++++RE+ K ++P + +VG+ G KW
Sbjct: 9 DKKVAKRGKK------DPNKPKRALSAYMFFVQDWRERIKSENP-DADFGSVGRLLGAKW 61
Query: 78 KSMSEADKAPYVAKAE 93
+ MS ++K PY KA+
Sbjct: 62 QEMSASEKKPYEDKAQ 77
>gi|409049822|gb|EKM59299.1| hypothetical protein PHACADRAFT_249698 [Phanerochaete carnosa
HHB-10118-sp]
Length = 580
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR-------EQYKKDHPKNK-SVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ R E + + K SV A
Sbjct: 426 AQRKAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRSDAALVLEVFGDETETTKQSVLAAA- 484
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
KW+SM++ ++ P++A+AE+ K+EYE K Y
Sbjct: 485 ----KWRSMTDEERKPFLAQAEQEKLEYEAARKMY 515
>gi|238486744|ref|XP_002374610.1| nucleosome binding protein (Nhp6a), putative [Aspergillus flavus
NRRL3357]
gi|317144043|ref|XP_003189559.1| non-histone chromosomal protein 6 [Aspergillus oryzae RIB40]
gi|220699489|gb|EED55828.1| nucleosome binding protein (Nhp6a), putative [Aspergillus flavus
NRRL3357]
Length = 104
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F + RE+ ++++P S VGK GEKWK++SEAD+ PY KA
Sbjct: 20 KDPNAPKRGLSAYMFFANDNREKVREENP-GISFGQVGKMLGEKWKALSEADRRPYEDKA 78
Query: 93 EKRKVEY 99
K Y
Sbjct: 79 AADKKRY 85
>gi|119588737|gb|EAW68331.1| hCG1991922, isoform CRA_a [Homo sapiens]
gi|119588738|gb|EAW68332.1| hCG1991922, isoform CRA_a [Homo sapiens]
Length = 188
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF++ E+ + K + P S V K GE W + + DK PY ++
Sbjct: 39 KDPNAPKRPPSAFFLYFSEYGPKIKGERP-GLSFGDVAKKLGEMWNNTAADDKQPYEKRS 97
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 98 AKLKEKYEKDIAAY 111
>gi|242064692|ref|XP_002453635.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
gi|241933466|gb|EES06611.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
Length = 488
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
+P SA+FV+ +E R + K+V +GK GE+WK+M+EA KAPY A K+K EY
Sbjct: 290 QPMSAYFVYSQERRAALVAEK---KNVPEIGKITGEEWKNMTEAQKAPYEKVARKQKEEY 346
Query: 100 EKDMKNYNRRQAE 112
+K M+ Y +++ E
Sbjct: 347 QKQMEVYKQKKIE 359
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMS 81
DPN+PKRPAS+F +F +E R+Q ++ P N S+ A+ KWK +S
Sbjct: 409 DPNRPKRPASSFLLFSKEARKQLLEERPGINNSSLNALISV---KWKELS 455
>gi|56756178|gb|AAW26264.1| SJCHGC08557 protein [Schistosoma japonicum]
Length = 177
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP+ PKR SAFF F + FR + + +HP K V+ + K G +W+ S DK Y +
Sbjct: 93 IKDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECS--DKEKYEQR 149
Query: 92 AEKRKVEYEKDMKNY 106
A+ K+ YE+DM+ Y
Sbjct: 150 AQNDKLRYEQDMQKY 164
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYV 89
KD N+PK P + F++ RE+++K HP N + K EKWK M+
Sbjct: 2 MVKDKNRPKPPMKPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMN-------- 53
Query: 90 AKAEKRKVEYEK---DMKNYNRRQAEGTKP 116
E+RK E D + +NR A P
Sbjct: 54 --MEQRKCFEEMAKLDTERFNREMAHYIPP 81
>gi|268565525|ref|XP_002639471.1| Hypothetical protein CBG04066 [Caenorhabditis briggsae]
Length = 689
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+PKR A+A+F++ R K+D +V V K GG KWK MS DK + KA
Sbjct: 554 DPNEPKRAATAYFLWFNANRASLKED---GDTVPEVAKKGGAKWKEMSADDKKEWEQKAA 610
Query: 94 KRKVEYEKDMKNY 106
+ K+ YE +MK Y
Sbjct: 611 QDKIRYENEMKEY 623
>gi|355757371|gb|EHH60896.1| hypothetical protein EGM_18788, partial [Macaca fascicularis]
Length = 189
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E + K +HP SV+ V K GE W +E DK PY KA
Sbjct: 86 KDPNAPKRPPLAFFMFSSEDCPKIK-EHP-GLSVSDVAKKLGEMWNYTAEDDKHPYEKKA 143
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ +
Sbjct: 144 VKLKEKYEKDIAAF 157
>gi|71012570|ref|XP_758511.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
gi|46098169|gb|EAK83402.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
Length = 125
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+++ KA KDP+ PKRP SA+ F ++ RE+ K +P+ VG+ G KWK MSEA+K
Sbjct: 42 KRTTKAKKDPDAPKRPLSAYMFFSQDQRERVKNANPE-AGFGEVGRLLGAKWKEMSEAEK 100
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQ 110
PY A + K E + YN+R+
Sbjct: 101 KPYNDMANRDKARAEAEKAAYNKRR 125
>gi|357608070|gb|EHJ65807.1| mobility group protein 1B [Danaus plexippus]
Length = 180
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K K +KPKRP SA+ +++ REQ K ++P K V + K GGE W+SM DK +
Sbjct: 57 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLK-VTEIAKKGGEIWRSMK--DKTVWE 113
Query: 90 AKAEKRKVEYEKDMKNYN 107
KA K K +Y KD+++YN
Sbjct: 114 EKAAKAKEQYTKDLESYN 131
>gi|196005089|ref|XP_002112411.1| hypothetical protein TRIADDRAFT_56397 [Trichoplax adhaerens]
gi|190584452|gb|EDV24521.1| hypothetical protein TRIADDRAFT_56397 [Trichoplax adhaerens]
Length = 253
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYK-KDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP+KPKRP +A+F F+ EFR+ K K + K + ++ GEKW++M+ A+KA Y A
Sbjct: 135 DPDKPKRPQTAYFYFLAEFRKAMKAKGVIEGKKLTSLS---GEKWRAMTPAEKAKYEAMV 191
Query: 93 EKRKVEYEKDMKNYNRRQ----AEGTKP 116
K K Y+++M Y +++ E +KP
Sbjct: 192 TKDKERYQREMDAYRKKKGIKDGEASKP 219
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
K+P SA+ F R++ KK + + K G +W++M+ + K PY A + K
Sbjct: 63 KKPKSAYIFFTTSLRQRLKKSGREMPKAHEIAKMCGSEWRAMTASQKKPYDELAARDKQR 122
Query: 99 YEKDMKNYNRRQAEGTKPEEEEES 122
Y +++ + R++A+ KP+ + +
Sbjct: 123 YMEEISKF-RKKADPDKPKRPQTA 145
>gi|334348387|ref|XP_003342057.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Monodelphis domestica]
Length = 208
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN--KSVAAVGKAGGEKWKSMSEAD 84
K G KD N PK P S FF+F EFR + K N S+ V K GE W ++S+ +
Sbjct: 82 KGGVGGKDSNAPKHPPSGFFLFCSEFRPKIKST---NPGISIGDVAKKLGEMWNNLSDNE 138
Query: 85 KAPYVAKAEKRKVEYEKDM 103
K PY KA K K +YEKD+
Sbjct: 139 KQPYNNKAAKLKEKYEKDV 157
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ ++ RE++KK +P+ + A K E+WK+MS +K+ + A+ K+ Y++
Sbjct: 14 SAYAFLVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKLRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|403293162|ref|XP_003937591.1| PREDICTED: high mobility group protein B4 [Saimiri boliviensis
boliviensis]
Length = 254
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 142 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSATTDL 200
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
+K PY +A + +Y ++++ Y +++ +
Sbjct: 201 EKQPYEQRAALLRAKYFEELELYRKQRKQC 230
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAA--VGKAGGEKWKSMSEADKAPYVAKAEK 94
KPK S++ F+ +R ++K+ P N V + EKW+S+S+ +KA Y A A+
Sbjct: 71 KPKANVSSYIHFLLNYRNKFKEQQP-NTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKL 129
Query: 95 RKVEYEKDMKNY 106
K Y+++M NY
Sbjct: 130 DKARYQEEMMNY 141
>gi|443897201|dbj|GAC74542.1| putative N2 [Pseudozyma antarctica T-34]
Length = 1388
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 15/93 (16%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFRE---------QYKKDHPKNKSVAAVGKAG 73
KAG+ KDPN PK+P SA+F+F+ R + +++ K +AA
Sbjct: 1294 KAGKSRKGNLKDPNAPKKPLSAYFLFLRAIRADPNMTQAVFEGEQETTKQSVLAAA---- 1349
Query: 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
KW+S+SE +K PY+ +AE K YE+ + Y
Sbjct: 1350 --KWRSLSETEKQPYLDRAEADKARYERLRREY 1380
>gi|72051831|ref|XP_792040.1| PREDICTED: high mobility group protein 1 homolog
[Strongylocentrotus purpuratus]
gi|115767180|ref|XP_001176807.1| PREDICTED: high mobility group protein 1 homolog
[Strongylocentrotus purpuratus]
Length = 204
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K AK GR+ +A KDP+ PKR SAFF+F + R K++H K+ SV + +A WK+
Sbjct: 82 KNAKGGRR--RAKKDPDAPKRNLSAFFLFSRDERGAIKQEH-KDWSVGKIAQALAAIWKT 138
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEE 121
++ ADKA Y A+A K Y ++M + + + K ++ +E
Sbjct: 139 ITPADKAKYDAEAALEKQRYMREMAAFKESKPKQVKKQQRKE 180
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPNKP+ SA+ F+++ R + + + A K ++WK M + DK P+ K+
Sbjct: 6 KDPNKPRGRMSAYAYFVQDRRSKAEG----QVNFTAFSKECADRWKHMDDGDKRPFNDKS 61
Query: 93 EKRKVEYEKDMKNY 106
K+ Y+++M Y
Sbjct: 62 ASDKIRYDREMSGY 75
>gi|290998589|ref|XP_002681863.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
gi|284095488|gb|EFC49119.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
Length = 219
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
AG+KS K KDPN PK+P + +F+F +E RE K + KS + V K GE W S+S+
Sbjct: 2 AGKKSTKK-KDPNAPKKPKTGYFLFCDEHREAAKAKTGEKKSASEVSKVLGEMWNSLSDE 60
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
K PY K Y+K + YN + E
Sbjct: 61 QKKPYNDK-------YKKSLDGYNAQMEE 82
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
RP +++ +F +E R++ ++ K V V K G WK MS+ K PY+A+AEK K Y
Sbjct: 121 RPLTSYMIFSQEMRKKLLEEDSTLK-VTEVAKKVGALWKKMSDEQKKPYIAQAEKLKAAY 179
>gi|229368114|gb|ACQ59037.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 206
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K + P ++ V K GE W + D+ P+
Sbjct: 86 KKFKDPNAPKRPPSAFFIFCAEYRPKVKGETP-GATIGDVAKRLGEMWNGTASEDRQPFE 144
Query: 90 AKAEKRKVEYEKDMKNYNRRQAEG 113
KA K K +YEK++ Y + G
Sbjct: 145 KKAAKLKEKYEKEVAAYRAKTKPG 168
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
K+ KPK S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 2 VKELGKPKGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSLKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A + K YE++M +Y
Sbjct: 62 LARQDKARYEREMMSY 77
>gi|449681405|ref|XP_002159252.2| PREDICTED: FACT complex subunit SSRP1-like [Hydra magnipapillata]
Length = 774
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P K S K KD N PKRP SAF ++M E RE+ K D+P + + K GGE+WK
Sbjct: 528 KRPKKEEGSSKKKKKDENAPKRPMSAFMLYMNEVREKIKADNP-GIAFTDIAKKGGEQWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
++++ K +AK K K Y D Y++ +G
Sbjct: 587 TLTDKTKWENMAKEAKNK--YTIDFAAYSKTIKDG 619
>gi|320585897|gb|EFW98576.1| nucleosome-binding protein [Grosmannia clavigera kw1407]
Length = 94
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E RE + ++P S VGK GE+WK+++E + PY AKA
Sbjct: 20 KDPNAPKRGLSAYMFFANEQRENVRDENP-GISFGQVGKILGERWKALNEKQRTPYEAKA 78
Query: 93 EKRKVEYEKDMKNYN 107
K YE YN
Sbjct: 79 AADKKRYEDAKAAYN 93
>gi|451847653|gb|EMD60960.1| hypothetical protein COCSADRAFT_98214 [Cochliobolus sativus ND90Pr]
Length = 106
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E RE+ ++D+P K VGK GEKWK+++E + PY AKA
Sbjct: 24 DPNAPKRGLSAYMFFANEQREKVREDNPGIK-FGEVGKLLGEKWKALNEKQRQPYEAKAA 82
Query: 94 KRKVEYEKDMKNYN 107
K YE++ Y
Sbjct: 83 LDKKRYEQEKAAYT 96
>gi|410910282|ref|XP_003968619.1| PREDICTED: high mobility group-T protein-like isoform 1 [Takifugu
rubripes]
Length = 196
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F E R + K ++P ++ K GE W
Sbjct: 76 NYVPPKGHKK--KRFKDPNAPKRPPSAFFLFCAELRPKVKSENP-GLTIGDTAKKLGEMW 132
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S + +K PY KA K K +Y+KD+ Y
Sbjct: 133 NSKTAEEKQPYEKKAAKLKEKYDKDIVAY 161
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP + + A K E+WK+MS +K +
Sbjct: 3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSPKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|403222987|dbj|BAM41118.1| high-mobility-group protein [Theileria orientalis strain Shintoku]
Length = 93
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSM 80
+K+ +K + KDPN PKR S++ F +E R + K++P K VA VGK G W S+
Sbjct: 6 SKSAKKGKRTKKDPNAPKRALSSYMFFAKEKRNELIKENPDLAKDVATVGKLVGAAWNSL 65
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+++KAPY AE + YE++ Y +
Sbjct: 66 DDSEKAPYEKLAEADRERYEREKLEYQK 93
>gi|395857418|ref|XP_003801091.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 197
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP S+ V K G W + + DK PY KA
Sbjct: 132 KDPNAPKRPLSAFFLFCSEYCPKSKGEHP-GLSIGEVAKKLGVMWNNTAADDKQPYEKKA 190
Query: 93 EKRKV 97
K K+
Sbjct: 191 AKLKL 195
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 28 SGKAAK----DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSE 82
SGK K DP K + S+ F++ E++KK HP + + + K E+WK+MS
Sbjct: 37 SGKITKHGKGDPKKLRGKMSSCAFFVQTSWEEHKKKHPGASVTFSEFSKKCSERWKTMSG 96
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
++ + A+ K YE++MK Y R+ E
Sbjct: 97 KERGKFEDMAKADKAPYEREMKTYILRKGE 126
>gi|393246429|gb|EJD53938.1| hypothetical protein AURDEDRAFT_110629 [Auricularia delicata
TFB-10046 SS5]
Length = 486
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 13/97 (13%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR------EQYKKDHPKNKSVAAVGKAG 73
A RK+GK+ KDPN PK+P SA+F+F+++ R ++ D + + + A
Sbjct: 348 AQRKAGKSRKGNLKDPNAPKKPLSAYFMFLQKIRSSPQLVQEVFGDETETTKQSVLAAA- 406
Query: 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
KW+S+S+A+K P++ +AE+ K+ YE + Y R
Sbjct: 407 --KWRSLSDAEKKPFLVQAEQDKIAYENARRLYEDRH 441
>gi|344301046|gb|EGW31358.1| hypothetical protein SPAPADRAFT_141112 [Spathaspora passalidarum
NRRL Y-27907]
Length = 277
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 13 AKLSVNKKPAKAGRKSGKAAK-----DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSV 66
AK + +KPA + +S K DP+ PKRP +A+ +F E +E+ K+++ KN V
Sbjct: 100 AKKQIKRKPASSSAESAPTPKVAKVRDPDLPKRPTNAYLIFCEMEKERIKQENEEKNPGV 159
Query: 67 AA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 124
+ K+ E WK ++E D+ PY E + Y+++M YN+++ +GT+ EE E+++
Sbjct: 160 TNDLSKSMTEAWKLLNEEDRKPYYKLYEDDRDRYQREMAIYNQKK-QGTEEVEEPEAKR 217
>gi|444725503|gb|ELW66067.1| Trem-like transcript 1 protein [Tupaia chinensis]
Length = 668
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR S FF+F EFR + K +P S+ V K GE W ++S+++K PY+
Sbjct: 586 DPNAPKRRPSVFFLFCSEFRLKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITNGA 644
Query: 94 K 94
K
Sbjct: 645 K 645
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 511 SAYTFFVQTCREKHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 570
Query: 102 DMKNY 106
+MK+Y
Sbjct: 571 EMKDY 575
>gi|255715687|ref|XP_002554125.1| KLTH0E14850p [Lachancea thermotolerans]
gi|238935507|emb|CAR23688.1| KLTH0E14850p [Lachancea thermotolerans CBS 6340]
Length = 93
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P +A +++ + KDPN PKR SA+ F E R+ + ++P + VG+ G+KWK++
Sbjct: 4 PREAKKRTTRRKKDPNAPKRALSAYMFFANENRDIVRAENP-GVTFGQVGRLLGDKWKAL 62
Query: 81 SEADKAPYVAK--AEKRKVEYEKDMKN 105
++ +K PY AK A+K++ E EK++ N
Sbjct: 63 TDEEKQPYEAKHAADKKRYESEKELYN 89
>gi|407850184|gb|EKG04681.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 26 RKSGKA-AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
R GK AKD N PKR SA+F F+ +FR K HP + SV KA G WK +S+
Sbjct: 192 RGGGKVKAKDENAPKRSMSAYFFFVGDFR----KKHP-DLSVTETSKAAGAAWKELSDEM 246
Query: 85 KAPYVAKAEKRKVEYEKDM 103
K PY A A+K K Y+++M
Sbjct: 247 KKPYEAMAQKDKERYQREM 265
>gi|308238179|ref|NP_001184126.1| structure specific recognition protein 1 [Xenopus (Silurana)
tropicalis]
Length = 695
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKRP SA+ +++ RE+ K ++P S+ + K GE WKSMS+ K + +AE
Sbjct: 537 DPSAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWKSMSKDKKEEWDRRAE 595
Query: 94 KRKVEYEKDMKNYN 107
+ K +YEK MK YN
Sbjct: 596 EAKRDYEKAMKEYN 609
>gi|125538867|gb|EAY85262.1| hypothetical protein OsI_06634 [Oryza sativa Indica Group]
Length = 504
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
K+P SA+FV+ ++ R + K+V +G+ GE+WK+MSEA+KAP+ A A K++ E
Sbjct: 286 KQPMSAYFVYTQQRRAALVAE---KKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREE 342
Query: 99 YEKDMKNYNRR 109
Y+ +M Y +R
Sbjct: 343 YQVEMAAYRQR 353
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+PK+PAS+F +F +E R Q ++ P S + + KWK + EA+K + KA
Sbjct: 410 DPNRPKKPASSFLLFSKEARRQLAEERPGVAS-STLTALVSVKWKELGEAEKQAWNGKAA 468
Query: 94 KRKVEYEKDMKNYNR 108
+ Y++DM+ Y +
Sbjct: 469 EAMAAYKRDMEEYTK 483
>gi|118792222|ref|XP_001238271.1| AGAP012334-PA [Anopheles gambiae str. PEST]
gi|116116797|gb|EAU75768.1| AGAP012334-PA [Anopheles gambiae str. PEST]
Length = 111
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SA+ +++ REQ KK++P K V + K GGE W+ M DK+ + KA K K
Sbjct: 4 KPKRPLSAYMLWLNSAREQIKKENPGIK-VTEIAKKGGELWRGMK--DKSEWEYKAAKMK 60
Query: 97 VEYEKDMKNYNR 108
EY K M+++ R
Sbjct: 61 DEYNKQMQDFER 72
>gi|392592955|gb|EIW82281.1| HMG-box [Coniophora puteana RWD-64-598 SS2]
Length = 279
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEF-------REQYKKDHPKNK-SVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ RE + + K SV A
Sbjct: 150 AQRKAGKSRRSNLKDPNAPKKPLSAYFMFLQRIRSDPALVREVFGDEQETTKQSVLAAA- 208
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
KW+ MS+ ++ P++A+AE+ K+EYE + Y
Sbjct: 209 ----KWRDMSDDERKPFLARAEQEKLEYEAARRLY 239
>gi|126274287|ref|XP_001387507.1| Nonhistone chromosomal protein 6A [Scheffersomyces stipitis CBS
6054]
gi|126213377|gb|EAZ63484.1| Nonhistone chromosomal protein 6A, partial [Scheffersomyces
stipitis CBS 6054]
Length = 85
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK+ + KDP+ PKR SA+ F E R+ + ++P S VGK GEKWK+++ +K
Sbjct: 6 RKATRKKKDPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALTGEEK 64
Query: 86 APYVAKAEKRKVEYEKDMKNY 106
PY KAE K YEK+ Y
Sbjct: 65 GPYENKAEADKKRYEKEKAEY 85
>gi|324526583|gb|ADY48692.1| High mobility group protein 1.2, partial [Ascaris suum]
Length = 248
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK + KDPN PKR SAFF F + R + ++ HP+ K V V + G WK++S+ ++
Sbjct: 125 RKRKRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRYWKALSDEER 183
Query: 86 APYVAKAEKRKVEYEKDMKNY 106
Y KA + K Y ++M+NY
Sbjct: 184 MVYERKALEDKERYAEEMRNY 204
>gi|47497872|dbj|BAD20056.1| putative embryogenic callus protein 98b [Oryza sativa Japonica
Group]
gi|50252043|dbj|BAD27975.1| putative embryogenic callus protein 98b [Oryza sativa Japonica
Group]
gi|125581537|gb|EAZ22468.1| hypothetical protein OsJ_06136 [Oryza sativa Japonica Group]
Length = 504
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
K+P SA+FV+ ++ R + K+V +G+ GE+WK+MSEA+KAP+ A A K++ E
Sbjct: 286 KQPMSAYFVYTQQRRAALVAE---KKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREE 342
Query: 99 YEKDMKNYNRR 109
Y+ +M Y +R
Sbjct: 343 YQVEMAAYRQR 353
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+PK+PAS+F +F +E R Q ++ P S + + KWK + EA+K + KA
Sbjct: 410 DPNRPKKPASSFLLFSKEARRQLAEERPGVAS-STLTALVSVKWKELGEAEKQAWNGKAA 468
Query: 94 KRKVEYEKDMKNYNR 108
+ Y++DM+ Y +
Sbjct: 469 EAMAAYKRDMEEYTK 483
>gi|302652822|ref|XP_003018251.1| hypothetical protein TRV_07738 [Trichophyton verrucosum HKI 0517]
gi|291181876|gb|EFE37606.1| hypothetical protein TRV_07738 [Trichophyton verrucosum HKI 0517]
Length = 132
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+ + PY KA
Sbjct: 60 DPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSDKQRVPYEEKAA 118
Query: 94 KRKVEYEKDMKNYN 107
K YE + YN
Sbjct: 119 TDKQRYEDEKAAYN 132
>gi|242389922|dbj|BAH80451.1| putative HMG1 protein [Lentinula edodes]
Length = 560
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR---EQYKKDHPKNKSVAAVGKAGGEK 76
A RK+GK+ KDPN PK+P SA+F+F++ R + +K K
Sbjct: 426 AQRKAGKSRKSNIKDPNAPKKPLSAYFMFLQRIRANPQLVQKVFGDETETTKQSVLAAAK 485
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++ ++ P++A+AE+ K+EYE + Y
Sbjct: 486 WRSMTDDERKPFLAQAEQEKMEYEAARRLY 515
>gi|47228066|emb|CAF97695.1| unnamed protein product [Tetraodon nigroviridis]
Length = 662
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
+ A LSV P AG K + KDPN+P++P SA+ +F + + K +P + S V
Sbjct: 255 QTAPLSV---PGMAGNKKARKKKDPNEPQKPVSAYALFFRDTQAAIKGQNP-SASFGEVS 310
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKS 125
K W S++E K Y K E K EY K + Y Q EE E + S
Sbjct: 311 KIVASMWDSLAEEQKQVYKRKTEAAKKEYLKALAAYKANQLSQPITEEMETAPSS 365
>gi|324514253|gb|ADY45807.1| FACT complex subunit SSRP1 [Ascaris suum]
Length = 91
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K AKDPN PKR SAFF +M+E R++ KK VA V KA G +W +S DK+ +
Sbjct: 12 KKAKDPNAPKRAMSAFFFWMQENRDRLKKP---GMGVADVAKAAGAEWAKLS--DKSKWE 66
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE+ K YE+D+ Y
Sbjct: 67 KKAEEDKKRYERDLVAY 83
>gi|410044942|ref|XP_001169551.3| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 269
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF++ E+ + K + P S+ K GE W + + DK PY
Sbjct: 114 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERP-GLSIGDAAKKLGEMWNNTAADDKQPYE 172
Query: 90 AKAEKRKVEYEKDMKNY 106
++ K K +YEKD+ Y
Sbjct: 173 KRSAKLKEKYEKDIAAY 189
>gi|213407940|ref|XP_002174741.1| predicted protein [Schizosaccharomyces japonicus yFS275]
gi|212002788|gb|EEB08448.1| predicted protein [Schizosaccharomyces japonicus yFS275]
Length = 134
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KA RK+ + KDPN PKR SAF F RE+ K+++P+ + +G G+KWK+++
Sbjct: 3 KAARKTRR--KDPNAPKRNMSAFMFFSMSNREKIKEENPE-ATFGQIGSLLGKKWKTLTA 59
Query: 83 ADKAPYVAKAEKRKVEYEKDM 103
+K PY KA K K YE++
Sbjct: 60 VEKEPYEEKARKDKERYEREC 80
>gi|156083745|ref|XP_001609356.1| high mobility group protein-like protein NHP1 [Babesia bovis T2Bo]
gi|730136|sp|P40632.1|NHP1_BABBO RecName: Full=High mobility group protein homolog NHP1
gi|344189439|pdb|2LHJ|A Chain A, Nmr Structure Of The High Mobility Group Protein-Like
Protein Nhp1 From Babesia Bovis T2bo (Baboa.00841.A)
gi|155890|gb|AAA27799.1| non-histone protein [Babesia bovis]
gi|154796607|gb|EDO05788.1| high mobility group protein-like protein NHP1 [Babesia bovis]
Length = 97
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEAD 84
R+ KA KDPN PKR S++ F +E R + ++P+ K VAA+GK G W ++S+ +
Sbjct: 11 RRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEE 70
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQA 111
K PY +++ +V YE++ Y +R+
Sbjct: 71 KKPYERMSDEDRVRYEREKAEYAQRKV 97
>gi|49250826|gb|AAH74541.1| Ssrp1 protein, partial [Xenopus (Silurana) tropicalis]
Length = 629
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKRP SA+ +++ RE+ K ++P S+ + K GE WKSMS+ K + +AE
Sbjct: 537 DPSAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWKSMSKDKKEEWDRRAE 595
Query: 94 KRKVEYEKDMKNYN 107
+ K +YEK MK YN
Sbjct: 596 EAKRDYEKAMKEYN 609
>gi|68061725|ref|XP_672863.1| high mobility group protein [Plasmodium berghei strain ANKA]
gi|68076125|ref|XP_679982.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490279|emb|CAI01706.1| high mobility group protein, putative [Plasmodium berghei]
gi|56500842|emb|CAH99000.1| hypothetical protein PB001601.02.0 [Plasmodium berghei]
Length = 98
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP PKR SA+ ++++ R + ++ P+ K VA VGK GE W ++ A KAPY KA
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIQERPELAKEVAQVGKLIGEAWGQLTPAQKAPYEKKA 79
Query: 93 EKRKVEYEKDMKNYNR 108
E KV Y K+++ Y +
Sbjct: 80 ELDKVRYSKEIEEYRK 95
>gi|356506416|ref|XP_003521979.1| PREDICTED: FACT complex subunit SSRP1-like [Glycine max]
Length = 614
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KPAK K KDPN PKR S F F + RE KK +P S VG+ GEKWK
Sbjct: 515 KPAK---KESNKEKDPNAPKRAMSGFMFFSKLERENLKKTNP-GISFTDVGRVLGEKWKK 570
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
+S +K PY AKA + K Y ++ Y Q
Sbjct: 571 LSAEEKEPYEAKAREDKKRYMDEISGYKNPQ 601
>gi|67524855|ref|XP_660489.1| hypothetical protein AN2885.2 [Aspergillus nidulans FGSC A4]
gi|74597086|sp|Q5B995.1|NHP6_EMENI RecName: Full=Non-histone chromosomal protein 6
gi|40744280|gb|EAA63456.1| hypothetical protein AN2885.2 [Aspergillus nidulans FGSC A4]
gi|259486178|tpe|CBF83812.1| TPA: Non-histone chromosomal protein 6
[Source:UniProtKB/Swiss-Prot;Acc:Q5B995] [Aspergillus
nidulans FGSC A4]
Length = 106
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 22 AKAGRKSG-KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KA R++G + KDPN PKR SA+ F + R++ ++++P S VGK GEKWKS+
Sbjct: 10 TKATRETGGRKKKDPNAPKRGLSAYMFFANDNRDKVREENP-GISFGQVGKMLGEKWKSL 68
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEES 122
S+ ++ PY KA K YE + Y +AE E+EE S
Sbjct: 69 SDKERKPYEDKAAADKKRYEDEKAAYKAGEAE----EDEESS 106
>gi|336373684|gb|EGO02022.1| hypothetical protein SERLA73DRAFT_177720 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386499|gb|EGO27645.1| hypothetical protein SERLADRAFT_461466 [Serpula lacrymans var.
lacrymans S7.9]
Length = 365
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEF-------REQYKKDHPKNK-SVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ RE + ++ K SV A
Sbjct: 219 AQRKAGKSRKSNIKDPNAPKKPLSAYFMFLQRIRSEPALVREVFGEEQETTKQSVLAAA- 277
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
KW+SM++ ++ P++A+AE+ K++YE + Y
Sbjct: 278 ----KWRSMTDDERKPFLAQAEQEKLDYEAARRMY 308
>gi|253314412|ref|NP_001156579.1| structure specific recognition protein-like [Acyrthosiphon pisum]
Length = 755
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D +PKR A+A+ ++ E RE+ K D+P S + K GGE WK MS +DK+ Y KA
Sbjct: 547 DDGRPKRAATAYMIWFNEAREEIKSDNP-GISFVDIAKKGGELWKKMSTSDKSKYEEKAA 605
Query: 94 KRKVEYEKDMKNY 106
K K EY + MK +
Sbjct: 606 KSKEEYIEAMKEF 618
>gi|390601122|gb|EIN10516.1| hypothetical protein PUNSTDRAFT_132606 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 619
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 19/94 (20%)
Query: 26 RKSGKA----AKDPNKPKRPASAFFVFMEEFREQ---------YKKDHPKNKSVAAVGKA 72
RK+GK+ KDPN PK+P SA+F+F++ R ++ + K +AA
Sbjct: 455 RKAGKSRKGNIKDPNAPKKPLSAYFMFLQAIRSDPGLVREVFGHETETTKQSVLAA---- 510
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
KW+SM++ ++ P++A+AE+ K+EYE K Y
Sbjct: 511 --SKWRSMTDEERKPFLAQAEREKLEYETARKIY 542
>gi|291415373|ref|XP_002723927.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE S DK PY KA K
Sbjct: 117 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMRSEHSAKDKQPYEQKAAKL 175
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 176 KEKYEKDIAAY 186
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 25 GRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSE 82
GR+S K DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS
Sbjct: 19 GRRSVVMGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSA 78
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNY 106
+K+ + A+ K Y+++MKNY
Sbjct: 79 KEKSKFEDMAKSEKARYDREMKNY 102
>gi|194755944|ref|XP_001960239.1| GF11622 [Drosophila ananassae]
gi|190621537|gb|EDV37061.1| GF11622 [Drosophila ananassae]
Length = 111
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
+PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+ + DK+ + KA K K
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKSEWEQKAIKMK 61
Query: 97 VEYEKDMKNY 106
+Y K +K Y
Sbjct: 62 EDYNKAVKEY 71
>gi|183212221|gb|ACC54773.1| high-mobility group box 1 beta [Xenopus borealis]
Length = 95
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
K KDPN PKRP SAFF+F +FR + K ++P ++ + K GE W + + DK PY
Sbjct: 35 KKFKDPNAPKRPPSAFFLFCSDFRPKIKGEYP-GSTIGDIAKKLGEMWNNTATDDKLPY 92
>gi|449549519|gb|EMD40484.1| hypothetical protein CERSUDRAFT_111079 [Ceriporiopsis subvermispora
B]
Length = 596
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR---EQYKKDHPKNKSVAAVGKAGGEK 76
A R++GK+ KDPN PK+P SA+F+F++ R E ++ K
Sbjct: 447 AQRRAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRSDPELVREVFGDETETTKQSVLAAYK 506
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++ ++ P++A+AE+ K+EYE K Y
Sbjct: 507 WRSMTDDERKPFLAQAEQEKLEYEAARKMY 536
>gi|70953373|ref|XP_745792.1| high mobility group protein [Plasmodium chabaudi chabaudi]
gi|56526224|emb|CAH87922.1| high mobility group protein, putative [Plasmodium chabaudi
chabaudi]
Length = 98
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP PKR SA+ ++++ R + ++ P+ K VA VGK GE W ++ A KAPY KA
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIQERPELAKEVAQVGKLIGEAWGQLTPAQKAPYEKKA 79
Query: 93 EKRKVEYEKDMKNYNR 108
E KV Y K+++ Y +
Sbjct: 80 ELDKVRYSKEIEEYKK 95
>gi|412986017|emb|CCO17217.1| nucleosome binding protein [Bathycoccus prasinos]
Length = 346
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K+ S K KDPNKPK P + F+ RE+ K+ P S GK G++W+++S
Sbjct: 157 GKSTTSSTKEMKDPNKPKGPQGPYMCFVSHNREKIVKEFP-GISFGECGKKLGQRWQNLS 215
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNY 106
E K Y AEK K YEK+M+ Y
Sbjct: 216 EKGKEMYNEMAEKDKKRYEKEMEKY 240
>gi|29825377|gb|AAO92280.1| putative HMG-like protein [Dermacentor variabilis]
Length = 208
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K AKDPN PKRP SAFF F + R +++ P + SV V K G +W + + K+ Y
Sbjct: 88 KRAKDPNAPKRPLSAFFWFCNDERPNVRQESP-DASVGEVAKELGRRWNEVGDDVKSKYE 146
Query: 90 AKAEKRKVEYEKDMKNYNRRQAEGTKP 116
A K K YEK++K Y ++ + P
Sbjct: 147 GLAAKDKARYEKELKAYKGKKPKAASP 173
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
+KP+ SA+ F++ RE++KK HP +N A K E+WK+MSE++K + A+K
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPNENVVFAEFSKKCAERWKTMSESEKKRFHQMADK 64
Query: 95 RKVEYEKDMKNY 106
K ++ +M +Y
Sbjct: 65 DKKRFDTEMADY 76
>gi|1083056|pir||B61611 nonhistone chromosomal protein HMG-2 - bovine (fragments)
Length = 186
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 85 NAPKRPPSAFFLFSAEHRPKIKAEHP-GLSIGDTAKKLGEMWSQQSAKDKQPYEQKASKL 143
Query: 96 KVEYEK 101
K +YEK
Sbjct: 144 KEKYEK 149
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKP+ S++ F++ RE++KK HP A+V + E+WK+MS +K+ + A+
Sbjct: 4 DPNKPRGKMSSYAFFVQTSREEHKKKHPD----ASVNFS--ERWKTMSAKEKSKFEDMAK 57
Query: 94 KRKVEYEKDMKNY 106
K Y+++MKNY
Sbjct: 58 SDKARYDREMKNY 70
>gi|115445389|ref|NP_001046474.1| Os02g0258200 [Oryza sativa Japonica Group]
gi|113536005|dbj|BAF08388.1| Os02g0258200, partial [Oryza sativa Japonica Group]
Length = 269
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
+P SA+FV+ ++ R + K+V +G+ GE+WK+MSEA+KAP+ A A K++ EY
Sbjct: 52 QPMSAYFVYTQQRRAALVAE---KKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEY 108
Query: 100 EKDMKNYNRR 109
+ +M Y +R
Sbjct: 109 QVEMAAYRQR 118
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+PK+PAS+F +F +E R Q ++ P S + + KWK + EA+K + KA
Sbjct: 175 DPNRPKKPASSFLLFSKEARRQLAEERPGVAS-STLTALVSVKWKELGEAEKQAWNGKAA 233
Query: 94 KRKVEYEKDMKNYNR 108
+ Y++DM+ Y +
Sbjct: 234 EAMAAYKRDMEEYTK 248
>gi|302762326|ref|XP_002964585.1| hypothetical protein SELMODRAFT_166865 [Selaginella moellendorffii]
gi|300168314|gb|EFJ34918.1| hypothetical protein SELMODRAFT_166865 [Selaginella moellendorffii]
Length = 647
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKR S F F RE KK P S V K GE+WK+MS+ +K P+ ++A
Sbjct: 561 PNAPKRALSGFMYFSLAERENLKKSTP-GISFKDVAKTLGERWKAMSKDEKEPFESQARV 619
Query: 95 RKVEYEKDMKNYNRRQAEGTKPEEE 119
K Y K M+ YN+ A G+ ++E
Sbjct: 620 DKERYTKQMQGYNKGNAGGSTADDE 644
>gi|297297620|ref|XP_001106417.2| PREDICTED: high mobility group protein B2-like [Macaca mulatta]
Length = 210
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP++ + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPESSVNFAEFSKKCSERWKTMSAKEKSKFEGMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV Y+++MKNY
Sbjct: 65 KSDKVCYDREMKNY 78
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 36 NKPKRPASAFF-VFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
N PKRP SAFF F E R + K +HP S K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFL-FCSEHRPKIKSEHP-GLSTGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 95 RKVEYEKDMKNY 106
K +Y+KD+ Y
Sbjct: 151 LKEKYQKDIAAY 162
>gi|302814252|ref|XP_002988810.1| hypothetical protein SELMODRAFT_159743 [Selaginella moellendorffii]
gi|300143381|gb|EFJ10072.1| hypothetical protein SELMODRAFT_159743 [Selaginella moellendorffii]
Length = 647
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKR S F F RE KK P S V K GE+WK+MS+ +K P+ ++A
Sbjct: 561 PNAPKRALSGFMYFSLAERENLKKSTP-GISFKDVAKTLGERWKAMSKDEKEPFESQARV 619
Query: 95 RKVEYEKDMKNYNRRQAEGTKPEEE 119
K Y K M+ YN+ A G+ ++E
Sbjct: 620 DKERYTKQMQGYNKGNAGGSTADDE 644
>gi|444520312|gb|ELV12956.1| High mobility group protein B1 [Tupaia chinensis]
Length = 150
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP AFF+F E+ + K HP S K GE W + + DK PY
Sbjct: 75 KKFKDPNVPKRPPLAFFLFCFEYCPKIKGKHP-GLSTGVAAKKLGELWNNTAADDKQPYE 133
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 134 KKAAKLKEKYEKDIAAY 150
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S + F++ FRE++KK+H + + + K E+WK+MS +K + A+ YE+
Sbjct: 2 SPYTFFVQTFREEHKKEHSDVSVNFSEFSKKCSERWKTMSAKEKGKFEDMAKTDMALYER 61
Query: 102 DMKNY 106
+MK Y
Sbjct: 62 EMKTY 66
>gi|395732940|ref|XP_002813012.2| PREDICTED: nuclear autoantigen Sp-100-like [Pongo abelii]
Length = 263
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP AFF+F E+R + K +HP S+ V K W + + ADK Y KA
Sbjct: 150 DPNAPKRPPLAFFLFCSEYRPKIKGEHP-GLSIDDVVKKLAGMWNNTAAADKQFYENKAA 208
Query: 94 KRKVEYEKDMKNY 106
+ K +Y+KD+ Y
Sbjct: 209 RLKEKYKKDIAAY 221
>gi|302847869|ref|XP_002955468.1| hypothetical protein VOLCADRAFT_76727 [Volvox carteri f.
nagariensis]
gi|300259310|gb|EFJ43539.1| hypothetical protein VOLCADRAFT_76727 [Volvox carteri f.
nagariensis]
Length = 645
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PK+ + F F RE+ K ++P + +GK GE+WK M +KAPY A
Sbjct: 550 KDPNAPKKNLTGFMYFSNANREKVKAENP-GIAFGEIGKMLGERWKGMGADEKAPYEQMA 608
Query: 93 EKRKVEYEKDMKNYNRR 109
K KV Y + MK Y R
Sbjct: 609 AKDKVRYAEAMKAYKER 625
>gi|297665615|ref|XP_002811141.1| PREDICTED: high mobility group protein B4 [Pongo abelii]
Length = 189
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G+ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 79 VGKTKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSAATDL 137
Query: 84 DKAPYVAKAEKRKVEYEKDMKNY--NRRQAEGTK 115
+K PY +A + +Y ++++ Y R+Q K
Sbjct: 138 EKHPYEQRAALLRAKYFEELELYRKQRKQCNARK 171
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAA--VGKAGGEKWKSMSEADKAPYVAKAEK 94
KPK S++ F+ +R ++K+ P N V + EKW+S+S+ +KA Y A A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQP-NTYVGFEEFSRKCSEKWRSISKHEKAKYEALAKL 66
Query: 95 RKVEYEKDMKNY 106
K Y+++M NY
Sbjct: 67 DKARYQEEMMNY 78
>gi|312385331|gb|EFR29858.1| hypothetical protein AND_00899 [Anopheles darlingi]
Length = 174
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+KPKRP SA+ +++ REQ KK++P K V + K GGE W+ M DK+ + KA K
Sbjct: 65 SKPKRPLSAYMLWLNSAREQIKKENPGIK-VTEIAKKGGELWRGMK--DKSEWEFKAAKM 121
Query: 96 KVEYEKDMKNYNR 108
K EY K M+++ R
Sbjct: 122 KDEYNKQMQDFER 134
>gi|358060355|dbj|GAA93760.1| hypothetical protein E5Q_00406 [Mixia osmundae IAM 14324]
Length = 119
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+KSGK KDPN PKRP SA+ + ++ R Q K+D+P + S +GK G +WK + E++K
Sbjct: 35 KKSGKKEKDPNAPKRPLSAYMFYSQDKRTQVKEDNP-DASFGELGKILGAQWKDLDESEK 93
Query: 86 APYVAKAEKRKVEY 99
Y A + K Y
Sbjct: 94 KQYNDMATRDKERY 107
>gi|332267288|ref|XP_003282615.1| PREDICTED: high mobility group protein B3-like, partial [Nomascus
leucogenys]
Length = 103
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102
S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD
Sbjct: 1 SGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKD 59
Query: 103 MKNY 106
+ +Y
Sbjct: 60 VADY 63
>gi|440799045|gb|ELR20106.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 143
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
+A +K GK KDPN PKR +A+ +F E R + K D+P+ + K +KWK++S
Sbjct: 38 TRATKK-GKKEKDPNAPKRAKTAYIIFATEERPRAKADNPE-LGFGDLTKCVSDKWKALS 95
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112
+ +KAPY+ KA + K Y ++ YN+ +++
Sbjct: 96 DDEKAPYLEKAAQDKERYADEVSKYNKSKSD 126
>gi|440800724|gb|ELR21759.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 128
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP + + F E R + K+D+P + + K KWK MSE +K PY+ A+
Sbjct: 28 DPNAPKRPKTGYIFFSAEERVKVKEDNP-DLGFGDITKQVSAKWKDMSEEEKEPYLTLAK 86
Query: 94 KRKVEYEKDMKNY 106
K K YEK+M Y
Sbjct: 87 KDKERYEKEMSKY 99
>gi|268575214|ref|XP_002642586.1| C. briggsae CBR-HMG-4 protein [Caenorhabditis briggsae]
Length = 696
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+F + R K+D SVA V K G KWK++ DK + AKAE
Sbjct: 554 DPNAPKRAQSAYFHWFNANRLSLKED---GDSVADVAKKAGAKWKTLGAEDKKEWEAKAE 610
Query: 94 KRKVEYEKDMKNYNR 108
K K YE +MK Y +
Sbjct: 611 KDKTRYETEMKEYRK 625
>gi|401623234|gb|EJS41340.1| nhp6ap [Saccharomyces arboricola H-6]
Length = 93
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VGK GEKWK+++ +K PY AKA+
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENP-DITFGQVGKKLGEKWKALTPEEKLPYEAKAQ 75
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YE + + YN A
Sbjct: 76 ADKKRYESEKELYNATLA 93
>gi|992639|gb|AAB08831.1| high mobility group protein-2 (HMG-2) [Ambystoma mexicanum]
Length = 216
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP-YVAKA 92
DPN PKR SAFF+F E R + K D P S+ K GEKW + DK P + KA
Sbjct: 92 DPNAPKRLPSAFFLFCSEHRLKIKADCP-GLSIGDTAKKLGEKWSEQTPKDKIPSFEQKA 150
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 151 AKLKEKYEKDIAAY 164
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+M+ +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMNAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV Y+++MK+Y
Sbjct: 65 KGDKVRYDREMKSY 78
>gi|332017611|gb|EGI58308.1| Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit A [Acromyrmex echinatior]
Length = 1249
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+K KA +D P++P S +F+F+ + RE+ + +P + + + K +W + K
Sbjct: 65 KKRKKAPRDATAPRQPLSGYFLFLNDRREKVRNQNP-SLTFTEITKLLAAEWSKLPIDQK 123
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQA------EGTKPEEEEESEKSMSEVNDEDDDEE 137
Y+ AE+ K Y ++ +Y + +A + ++ + E + E++ +++N E +D++
Sbjct: 124 QRYLDAAEQDKERYNREFSDYKQTEAYRLFNEKQSERQNENKKERNGTDINTEQNDKD 181
>gi|384499401|gb|EIE89892.1| hypothetical protein RO3G_14603 [Rhizopus delemar RA 99-880]
Length = 352
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K R+ K K P PK P SA+ ++ E R + K P + +V + K EKW +M++
Sbjct: 186 KTARRVKKKIKSPGIPKHPLSAYMWYLTEVRPKTMKSFPSS-NVGQISKYCAEKWHTMTD 244
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNY 106
++AP+ KA+ K Y ++M+ Y
Sbjct: 245 EERAPWKTKAQVDKERYAREMQLY 268
>gi|255073265|ref|XP_002500307.1| set domain protein [Micromonas sp. RCC299]
gi|226515569|gb|ACO61565.1| set domain protein [Micromonas sp. RCC299]
Length = 1496
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
KRP +AFF+F +E R + P+ ++ ++AVGK GE+W+ +S+ +K PY KAE+ +
Sbjct: 674 KRPMTAFFIFSQEQRALLIEQRPELRTNISAVGKLMGERWRKLSDEEKFPYAIKAEEARH 733
Query: 98 EY 99
EY
Sbjct: 734 EY 735
>gi|221053558|ref|XP_002258153.1| high mobility group protein (HMG protein) [Plasmodium knowlesi
strain H]
gi|193807986|emb|CAQ38690.1| high mobility group protein (HMG protein),putative [Plasmodium
knowlesi strain H]
Length = 99
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP PKR SA+ ++++ R + K+ P+ ++VA VGK GE W +S A K PY K
Sbjct: 19 KDPLAPKRALSAYMFYVKDKRLELIKEKPELARNVAQVGKLVGEAWGKLSAAQKTPYEKK 78
Query: 92 AEKRKVEYEKDMKNYNR 108
A+ KV Y K+++ Y +
Sbjct: 79 AQLDKVRYSKEIEEYRK 95
>gi|302828472|ref|XP_002945803.1| hypothetical protein VOLCADRAFT_72419 [Volvox carteri f.
nagariensis]
gi|300268618|gb|EFJ52798.1| hypothetical protein VOLCADRAFT_72419 [Volvox carteri f.
nagariensis]
Length = 199
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDPN PK+ +AF F R++ K D+P S VGK GEKWKS+ +K+ Y K
Sbjct: 75 VKDPNAPKKNLTAFMYFSNAQRDKVKTDNP-GVSFGEVGKLLGEKWKSLGANEKSEYEEK 133
Query: 92 AEKRKVEYEKDMKNY 106
A+K K Y K+M+ Y
Sbjct: 134 AKKDKERYAKEMEAY 148
>gi|321461212|gb|EFX72246.1| hypothetical protein DAPPUDRAFT_201206 [Daphnia pulex]
Length = 759
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KD N+PKRP S++ +++ + REQ KKD+P SV + K GGE W+ + D++ + AKA
Sbjct: 578 KDANRPKRPQSSYMLWLNDSREQIKKDNP-GISVTDLMKKGGEMWQKVE--DRSIWEAKA 634
Query: 93 EKRKVEYEKDMKNYN 107
+ K Y+K MK Y
Sbjct: 635 KVAKEAYDKAMKEYT 649
>gi|151301198|ref|NP_001093087.1| mobility group protein 1B [Bombyx mori]
gi|95102634|gb|ABF51255.1| mobility group protein 1B [Bombyx mori]
Length = 119
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+KPKRP SA+ +++ REQ K ++P + V + K GGE WKSM DK + KA K
Sbjct: 3 DKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMK--DKTEWEQKAAKA 59
Query: 96 KVEYEKDMKNY 106
K +Y KD+++Y
Sbjct: 60 KEQYAKDLESY 70
>gi|426215132|ref|XP_004001831.1| PREDICTED: high mobility group protein B4 [Ovis aries]
Length = 196
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
GR+ + +DP+ P+RP S+F +F ++ Q K ++P + SV V KA G+ W + ++
Sbjct: 81 LGRRKKRRKRDPHAPRRPPSSFLLFCQDHYAQLKSENP-SWSVVQVAKASGKMWSAKTDV 139
Query: 84 DKAPYVAKAEKRKVEYEKDMKNY 106
DK PY +A + +Y +++ Y
Sbjct: 140 DKQPYEQRAALLRAKYREELSVY 162
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAK 91
+D KPK S++ F+ +R ++K+ P + EKW+S+S+ +KA Y A
Sbjct: 6 RDHLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEAL 65
Query: 92 AEKRKVEYEKDMKNY 106
A+ K Y+++M NY
Sbjct: 66 AKLDKARYQEEMMNY 80
>gi|367012149|ref|XP_003680575.1| hypothetical protein TDEL_0C04750 [Torulaspora delbrueckii]
gi|359748234|emb|CCE91364.1| hypothetical protein TDEL_0C04750 [Torulaspora delbrueckii]
Length = 93
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VG+ GE+WK+++ +K PY +KAE
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENP-DVTFGQVGRLLGERWKALTPDEKTPYESKAE 75
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YE + + YN +A
Sbjct: 76 ADKKRYESEKELYNATRA 93
>gi|405977513|gb|EKC41956.1| High mobility group protein B3 [Crassostrea gigas]
Length = 202
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 40/75 (53%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
AKDPN+PKR SA+F F+ + RE KK +A K KW M+E DK P+ K
Sbjct: 14 AKDPNRPKRATSAYFFFLSKMREDSKKAGKPITKIAEFTKECSAKWAKMNEKDKEPFAKK 73
Query: 92 AEKRKVEYEKDMKNY 106
A K Y+ +M Y
Sbjct: 74 ALTDKNRYDAEMAIY 88
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 33 KDPN---KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
KDPN KPKRP SA+F F+ +FR + K +K + K GE W+++ + +K P+
Sbjct: 91 KDPNDAGKPKRPQSAYFCFLADFRLKMKGKDIDHKEII---KMAGEAWRNLDDNEKKPFE 147
Query: 90 AKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
A+K + +YE+ + ++ R+ G P ++ + E
Sbjct: 148 KLAQKEQEKYEQALSDW-RKGGGGASPSKKPKQE 180
>gi|57232750|ref|NP_660206.2| high mobility group protein B4 [Homo sapiens]
gi|387912835|sp|Q8WW32.2|HMGB4_HUMAN RecName: Full=High mobility group protein B4
gi|189065201|dbj|BAG34924.1| unnamed protein product [Homo sapiens]
gi|208968483|dbj|BAG74080.1| high-mobility group box 4 [synthetic construct]
Length = 186
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ + +DP +P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 79 VGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDL 137
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
+K PY + + +Y ++++ Y R+Q K
Sbjct: 138 EKHPYEQRVALLRAKYFEELELY-RKQCNARK 168
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAA--VGKAGGEKWKSMSEADKAPYVAKAEK 94
KPK S++ F+ +R ++K+ P N V + EKW+S+S+ +KA Y A A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQP-NTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKL 66
Query: 95 RKVEYEKDMKNY 106
K Y+++M NY
Sbjct: 67 DKARYQEEMMNY 78
>gi|449685055|ref|XP_002156373.2| PREDICTED: high mobility group protein homolog TDP-1-like, partial
[Hydra magnipapillata]
Length = 218
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYK-KDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
K KDPNKPKR +A+F F+ +FREQ K K + + + A+ GEKW+SM++ +K Y
Sbjct: 98 KMGKDPNKPKRCQTAYFFFLHDFREQMKGKALLEGEKIPALA---GEKWRSMTDDEKKVY 154
Query: 89 VAKAEKRKVEYEKDM 103
+K K YEK M
Sbjct: 155 NDMVQKDKQRYEKAM 169
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
K+P SA+ F+ ++R KK V V K G W +M E +KAPY K K
Sbjct: 28 KKPTSAYIYFVSDYRLVLKKKGKATNKVNEVAKMCGTAWNAMKENEKAPYYEKYNIDKAR 87
Query: 99 YEKD 102
Y K+
Sbjct: 88 YLKE 91
>gi|6435676|pdb|1CG7|A Chain A, Hmg Protein Nhp6a From Saccharomyces Cerevisiae
Length = 93
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VGK GEKWK+++ +K PY AKA+
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENP-DITFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YE + + YN A
Sbjct: 76 ADKKRYESEKELYNATLA 93
>gi|223649078|gb|ACN11297.1| FACT complex subunit SSRP1 [Salmo salar]
Length = 711
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KD N PKRP S++ +++ RE+ K ++P S+ + K GE WK + + DK +
Sbjct: 535 KKQKDTNAPKRPMSSYMLWLNSSRERIKSENP-GISITEISKKAGEMWKQIGKEDKEEWD 593
Query: 90 AKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKS 125
KAE+ K YEK MK Y + P ++E +K+
Sbjct: 594 GKAEEAKKNYEKAMKEYRESGGGSSTPAKKESKKKA 629
>gi|451996730|gb|EMD89196.1| hypothetical protein COCHEDRAFT_1107529 [Cochliobolus
heterostrophus C5]
Length = 105
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E RE+ ++D+P K VGK GEKWK++++ + PY AKA
Sbjct: 23 DPNAPKRGLSAYMFFANEQREKVREDNPGIK-FGEVGKLLGEKWKALNDKQRQPYEAKAA 81
Query: 94 KRKVEYEKDMKNYN 107
K YE++ Y
Sbjct: 82 LDKKRYEQEKAAYT 95
>gi|151942838|gb|EDN61184.1| nonhistone chromosomal protein [Saccharomyces cerevisiae YJM789]
gi|190407991|gb|EDV11256.1| 11 kDa nonhistone chromosomal protein [Saccharomyces cerevisiae
RM11-1a]
gi|256268928|gb|EEU04275.1| Nhp6ap [Saccharomyces cerevisiae JAY291]
gi|259150205|emb|CAY87008.1| Nhp6ap [Saccharomyces cerevisiae EC1118]
gi|349581863|dbj|GAA27020.1| K7_Nhp6ap [Saccharomyces cerevisiae Kyokai no. 7]
Length = 93
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VGK GEKWK+++ +K PY AKA+
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENP-DITFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YE + + YN A
Sbjct: 76 ADKKRYESEKELYNATLA 93
>gi|23394916|gb|AAN31640.1|AF484963_1 high mobility group protein 1 [Biomphalaria glabrata]
Length = 215
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP +A+F+F+ ++R + ++K + K GE+W+S+S DK PY KA
Sbjct: 96 DPNKPKRPPTAYFLFLADYRIRMANKGIEHKELL---KMAGEEWRSLSNEDKKPYEKKAL 152
Query: 94 KRKVEYEKDMKNYNR 108
+ +YE M Y +
Sbjct: 153 EESKKYESAMTEYRK 167
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G+ S K KD NKPKR SA+F F+ + R++ K +A K EKWK++S
Sbjct: 9 GKNSKKKVKDVNKPKRATSAYFFFLAQCRKEAAKAGKAPTKIAEFTKEASEKWKALSADK 68
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKP 116
K P+ A A K YE +M Y + + KP
Sbjct: 69 KKPFEAAAADDKRRYETEMAVYKGKSVDPNKP 100
>gi|146412508|ref|XP_001482225.1| hypothetical protein PGUG_05245 [Meyerozyma guilliermondii ATCC
6260]
gi|146392989|gb|EDK41147.1| hypothetical protein PGUG_05245 [Meyerozyma guilliermondii ATCC
6260]
Length = 90
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR SA+ F E R+ + ++P + VGK GEKWK+M+ +K PY KAE
Sbjct: 13 DPDAPKRSLSAYMFFANENRDIIRAENP-GIAFGQVGKLLGEKWKAMNADEKVPYETKAE 71
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YEK+ Y +R +
Sbjct: 72 ADKKRYEKEKAEYAKRNS 89
>gi|444732719|gb|ELW72994.1| High mobility group protein B1 [Tupaia chinensis]
Length = 289
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP SV V K GE W + + +K PY KA
Sbjct: 91 DPNSPKRPPSAFFLFCSEYRPKIKGEHP-GLSVGDVTKKLGEMWNNTAADEKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 150 KLKEKYKKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAEEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|312385332|gb|EFR29859.1| hypothetical protein AND_00900 [Anopheles darlingi]
Length = 730
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D N PKRPA+AF ++M R+Q +KD+P S+ + K GGE WK + DK + AKA
Sbjct: 556 DANAPKRPATAFMLWMNATRDQIRKDNP-GLSITEIAKKGGELWKDLK--DKKDWEAKAA 612
Query: 94 KRKVEYEKDMKNY 106
K K Y + M Y
Sbjct: 613 KAKENYTEAMAAY 625
>gi|260824573|ref|XP_002607242.1| hypothetical protein BRAFLDRAFT_130806 [Branchiostoma floridae]
gi|229292588|gb|EEN63252.1| hypothetical protein BRAFLDRAFT_130806 [Branchiostoma floridae]
Length = 334
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQ----YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
KDPN PK+PA+AFF+F ++ R Q Y K+H + + K + W S+S DK Y
Sbjct: 184 KDPNAPKKPANAFFMFCQQRRSQVQESYYKEHKEEIGHHELTKRLAKSWNSLSSEDKKRY 243
Query: 89 VAKAEKRKVEYEKDMKNYN 107
EK K YE++M+ Y
Sbjct: 244 YDMYEKDKERYEREMREYT 262
>gi|47124491|gb|AAH70148.1| High-mobility group box 4 [Homo sapiens]
Length = 112
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 5 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDL 63
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
+K PY + + +Y ++++ Y R+Q K
Sbjct: 64 EKHPYEQRVALLRAKYFEELELY-RKQCNARK 94
>gi|6325309|ref|NP_015377.1| Nhp6ap [Saccharomyces cerevisiae S288c]
gi|128182|sp|P11632.1|NHP6A_YEAST RecName: Full=Non-histone chromosomal protein 6A
gi|24987379|pdb|1J5N|A Chain A, Solution Structure Of The Non-Sequence-Specific Hmgb
Protein Nhp6a In Complex With Sry Dna
gi|24987655|pdb|1LWM|A Chain A, Solution Structure Of The Sequence-Non-Specific Hmgb
Protein Nhp6a
gi|4034|emb|CAA33377.1| unnamed protein product [Saccharomyces cerevisiae]
gi|171883|gb|AAA34754.1| high mobility group non-histone protein [Saccharomyces cerevisiae]
gi|805034|emb|CAA89171.1| Nhp6ap [Saccharomyces cerevisiae]
gi|1314122|emb|CAA94998.1| Nhp6ap [Saccharomyces cerevisiae]
gi|51013911|gb|AAT93249.1| YPR052C [Saccharomyces cerevisiae]
gi|285815583|tpg|DAA11475.1| TPA: Nhp6ap [Saccharomyces cerevisiae S288c]
gi|392296063|gb|EIW07166.1| Nhp6ap [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 93
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VGK GEKWK+++ +K PY AKA+
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENP-DITFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YE + + YN A
Sbjct: 76 ADKKRYESEKELYNATLA 93
>gi|392300930|gb|EIW12019.1| Nhp6bp [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 162
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GE+WK
Sbjct: 71 KQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENP-DVTFGQVGRILGERWK 129
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111
+++ +K PY +KA+ K YE + + YN +A
Sbjct: 130 ALTAEEKQPYESKAQADKKRYESEKELYNATRA 162
>gi|50421411|ref|XP_459256.1| DEHA2D17710p [Debaryomyces hansenii CBS767]
gi|74631679|sp|Q6BRB4.1|NHP6_DEBHA RecName: Full=Non-histone chromosomal protein 6
gi|49654923|emb|CAG87430.1| DEHA2D17710p [Debaryomyces hansenii CBS767]
Length = 92
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR SA+ F E R+ + ++P S VGK GEKWK+++ DK PY KA+
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALTPEDKIPYENKAD 73
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YEK+ Y ++ A
Sbjct: 74 TDKKRYEKEKAEYAKKNA 91
>gi|401839076|gb|EJT42436.1| NHP6A-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 93
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VGK GEKWK+++ +K PY AKA+
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENP-DITFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YE + + YN A
Sbjct: 76 ADKKRYESEKELYNATLA 93
>gi|443895134|dbj|GAC72480.1| HMG box-containing protein [Pseudozyma antarctica T-34]
Length = 99
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+++ K+ KDP PKRP SA+ F ++ RE+ K+ +P+ VG+ G KWK MSEA+K
Sbjct: 16 KRTTKSKKDPAAPKRPLSAYMFFSQDHRERVKQANPEA-GFGDVGRLLGAKWKEMSEAEK 74
Query: 86 APY 88
PY
Sbjct: 75 KPY 77
>gi|18088957|gb|AAH21180.1| High-mobility group box 4 [Homo sapiens]
gi|312150396|gb|ADQ31710.1| high-mobility group box 4 [synthetic construct]
Length = 186
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDL 137
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
+K PY + + +Y ++++ Y R+Q K
Sbjct: 138 EKHPYEQRVALLRAKYFEELELY-RKQCNARK 168
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
KPK S++ F+ +R ++K+ P + EKW+S+S+ +KA Y A A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPSTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 96 KVEYEKDMKNY 106
K Y+++M NY
Sbjct: 68 KARYQEEMMNY 78
>gi|325181279|emb|CCA15692.1| high mobility group protein putative [Albugo laibachii Nc14]
Length = 231
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDP+ PKR +SAF + + R Q KK++P K+ + K GE W ++ KAPYV
Sbjct: 115 RAKKDPSAPKRASSAFLFYSQVMRPQLKKENPDLKNTD-ISKRLGEAWSKATDVQKAPYV 173
Query: 90 AKAEKRKVEYEKDMKNYN 107
K + + Y+++M+ +N
Sbjct: 174 EKEREDRSRYKREMEEWN 191
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
K P PKR S + +F + RE+ K P + V V +A + W MSE +K P+ + A
Sbjct: 32 KAPGAPKRGKSPYILFSMDKREEIKSHMPADAKVTDVMRAIADAWSKMSEDEKQPWKSAA 91
Query: 93 EKRKVEYEKDMKNYN 107
E K YE++M +Y+
Sbjct: 92 EVDKQRYEEEMASYD 106
>gi|407404609|gb|EKF29994.1| high mobility group protein, putative [Trypanosoma cruzi
marinkellei]
Length = 361
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 26 RKSGKA-AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
R GK KD N PKR SA+F F +FR K HP + SV KA G WK +S+
Sbjct: 283 RGGGKVKVKDENAPKRSMSAYFFFASDFR----KKHP-DLSVTETSKAAGAAWKELSDEM 337
Query: 85 KAPYVAKAEKRKVEYEKDM 103
K PY A A+K K Y+++M
Sbjct: 338 KKPYEAMAQKDKERYQREM 356
>gi|110808604|gb|ABB22048.1| HMBG4 [Homo sapiens]
gi|119627858|gb|EAX07453.1| high-mobility group box 4 [Homo sapiens]
Length = 186
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDL 137
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
+K PY + + +Y ++++ Y R+Q K
Sbjct: 138 EKHPYEQRVALLRAKYFEELELY-RKQCNARK 168
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAA--VGKAGGEKWKSMSEADKAPYVAKAEK 94
KPK S++ F+ +R ++K+ P N V + EKW+S+S+ +KA Y A A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQP-NTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKL 66
Query: 95 RKVEYEKDMKNY 106
K Y+++M NY
Sbjct: 67 DKARYQEEMMNY 78
>gi|426328852|ref|XP_004065350.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4
[Gorilla gorilla gorilla]
Length = 186
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDL 137
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
+K PY + + +Y ++++ Y R+Q K
Sbjct: 138 EKHPYEQRVALLRAKYFEELELY-RKQCNARK 168
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAA--VGKAGGEKWKSMSEADKAPYVAKAEK 94
KPK S++ F+ +R ++K+ P N V + EKW+S+S+ +KA Y A A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQP-NTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKL 66
Query: 95 RKVEYEKDMKNY 106
K Y+++M NY
Sbjct: 67 DKARYQEEMMNY 78
>gi|384501419|gb|EIE91910.1| hypothetical protein RO3G_16621 [Rhizopus delemar RA 99-880]
Length = 183
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 22 AKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
K GRKS A +DPN PK P + FF++ R+ K + P N+S+ V + G+K
Sbjct: 34 VKPGRKSNNPAANKKKRDPNAPKGPGNVFFLYCRMERDNIKDEVP-NESLGEVTRLLGQK 92
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
WK++++ +K Y +K EYE MK+Y
Sbjct: 93 WKALTKEEKQKYYDIYKKEMEEYESAMKSYT 123
>gi|241954210|ref|XP_002419826.1| high-mobility group non-histone chromosomal protein, putative
[Candida dubliniensis CD36]
gi|223643167|emb|CAX42041.1| high-mobility group non-histone chromosomal protein, putative
[Candida dubliniensis CD36]
Length = 92
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR SA+ F E R+ + ++P S VGK GEKWK+++ DK PY KAE
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALNSEDKLPYENKAE 73
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YEK+ Y ++ +
Sbjct: 74 ADKKRYEKEKAEYAKKNS 91
>gi|74638955|sp|Q9UVL1.1|NHP6_CANAL RecName: Full=Non-histone chromosomal protein 6
gi|6273391|gb|AAF06350.1|AF196333_1 nonhistone protein 6 [Candida albicans]
gi|238881668|gb|EEQ45306.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 92
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR SA+ F E R+ + ++P S VGK GEKWK+++ DK PY KAE
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALNSEDKLPYENKAE 73
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YEK+ Y ++ +
Sbjct: 74 ADKKRYEKEKAEYAKKNS 91
>gi|344230059|gb|EGV61944.1| HMG-box [Candida tenuis ATCC 10573]
Length = 259
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 18 NKKPAKAGRKSGKA---AKDPNKPKRPASAFFVFMEEFREQYKKDH--PKNKSVAAVGKA 72
NK+P K+ G +DPN PKRP +A+ +F E +E+ K + SV +GK
Sbjct: 93 NKRPKKSTAPKGTLKNRIRDPNLPKRPTNAYLIFCESEKERIKNETGDSSLSSVHDLGKN 152
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA---EGTKPEEEEESEKSMSEV 129
E WK++ E + PY E K Y ++M Y+ + + + T+ + E E
Sbjct: 153 LVEAWKNLDEEARKPYHKIFEDEKARYRREMIAYSLKNSDPLDATRADTEGEI------- 205
Query: 130 NDEDDDEEGSGEEDDD 145
D D + E G ED+D
Sbjct: 206 -DLDGEAEVEGNEDND 220
>gi|401624308|gb|EJS42370.1| abf2p [Saccharomyces arboricola H-6]
Length = 183
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKRP SA+F+F+++ R Q+ K++P + A + K GEKW+++ K Y+++ +K
Sbjct: 43 PKRPTSAYFLFLQDHRSQFVKENPTLRP-AEISKVAGEKWQTLDAGIKDKYLSQRKKLFS 101
Query: 98 EYEKDMKNYN 107
EY+K K Y+
Sbjct: 102 EYQKAKKEYD 111
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKRPA F + E R + HP +KS + K G+KW+S+ + K Y+
Sbjct: 116 PKRPAGPFIKYATEVRSKVFAQHP-DKSQLELMKIIGDKWQSLDKNTKEKYIQ------- 167
Query: 98 EYEKDMKNYN 107
EY+ ++ YN
Sbjct: 168 EYKTAIQEYN 177
>gi|359472717|ref|XP_003631191.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group B protein
6-like [Vitis vinifera]
Length = 502
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP K K P S FF F +E R + +K+V + K GE+WK+M+E K PY A+
Sbjct: 344 DPLKLKHPISTFFXFSKERRAALLAE---DKNVLEITKIAGEEWKNMTEKQKRPYEEIAK 400
Query: 94 KRKVEYEKDMKNYNRRQAEG 113
K K +Y+++MK Y +++ E
Sbjct: 401 KNKAKYQEEMKLYKQQKDEA 420
>gi|432915279|ref|XP_004079157.1| PREDICTED: TOX high mobility group box family member 4-A-like
[Oryzias latipes]
Length = 611
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
+V P K G+ KDPN+P++P SA+ +F + + K +P N S V K
Sbjct: 229 AVAPAPETTTAKKGRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNP-NASFGEVSKIVAS 287
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
W S++E K Y K E K EY K + Y Q EE E
Sbjct: 288 MWDSLAEDQKQVYKRKTEAAKKEYLKALAAYKANQLSQPSAEEME 332
>gi|126226|sp|P11873.1|HMGC_TETTH RecName: Full=High mobility group protein C; AltName:
Full=Non-histone chromosomal protein LG-1
Length = 100
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P PKRP SAFF+F + EQ KK++P N + + EKWK++ E +K Y +
Sbjct: 9 PAPPKRPLSAFFLFKQHNYEQVKKENP-NAKITELTSMIAEKWKAVGEKEKKKYETLQSE 67
Query: 95 RKVEYEKDMKNYNRR 109
K +YEKDM+ Y ++
Sbjct: 68 AKAKYEKDMQAYEKK 82
>gi|313227516|emb|CBY22663.1| unnamed protein product [Oikopleura dioica]
Length = 105
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK------SVAAVGKAGGEKWK 78
RK+ +AA KPKRP SAFF+F E R Q +KD KN V + K G WK
Sbjct: 7 ARKTKEAATGAPKPKRPLSAFFLFAAEHRPQVRKDLEKNTKEGVKVRVGDIAKKIGVMWK 66
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEE 118
++ +KA + A+ K +++ M YN +Q EG EE
Sbjct: 67 AIEADEKAKFQKLADAEKSKWQDAMAAYNAKQ-EGATAEE 105
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.299 0.120 0.322
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,429,860,660
Number of Sequences: 23463169
Number of extensions: 98509164
Number of successful extensions: 1722051
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9231
Number of HSP's successfully gapped in prelim test: 13781
Number of HSP's that attempted gapping in prelim test: 1398316
Number of HSP's gapped (non-prelim): 189962
length of query: 146
length of database: 8,064,228,071
effective HSP length: 110
effective length of query: 36
effective length of database: 9,778,246,777
effective search space: 352016883972
effective search space used: 352016883972
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 71 (32.0 bits)