Query 032166
Match_columns 146
No_of_seqs 239 out of 1094
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 10:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 99.9 2E-26 4.3E-31 157.8 11.5 89 18-107 3-93 (94)
2 cd01389 MATA_HMG-box MATA_HMG- 99.9 8.6E-22 1.9E-26 129.8 8.3 73 37-110 1-73 (77)
3 cd01388 SOX-TCF_HMG-box SOX-TC 99.9 3.5E-21 7.7E-26 125.4 8.4 69 38-107 2-70 (72)
4 PF00505 HMG_box: HMG (high mo 99.8 7.4E-21 1.6E-25 122.0 9.2 69 38-107 1-69 (69)
5 cd01390 HMGB-UBF_HMG-box HMGB- 99.8 1.9E-20 4E-25 119.0 9.2 65 38-103 1-65 (66)
6 smart00398 HMG high mobility g 99.8 2.8E-20 6E-25 119.0 9.3 70 37-107 1-70 (70)
7 COG5648 NHP6B Chromatin-associ 99.8 8.9E-21 1.9E-25 144.6 7.9 89 26-115 59-147 (211)
8 PF09011 HMG_box_2: HMG-box do 99.8 3.9E-20 8.5E-25 120.8 9.3 72 35-107 1-73 (73)
9 KOG0381 HMG box-containing pro 99.8 2.3E-18 4.9E-23 117.4 11.1 76 34-110 17-95 (96)
10 cd00084 HMG-box High Mobility 99.8 1.9E-18 4.2E-23 109.2 9.2 65 38-103 1-65 (66)
11 KOG0526 Nucleosome-binding fac 99.7 7.6E-18 1.6E-22 142.7 7.6 79 25-108 523-601 (615)
12 KOG0527 HMG-box transcription 99.7 6.1E-18 1.3E-22 138.2 6.4 80 31-111 56-135 (331)
13 KOG3248 Transcription factor T 99.3 2.6E-12 5.6E-17 104.3 7.0 77 37-114 191-267 (421)
14 KOG4715 SWI/SNF-related matrix 99.3 1.5E-11 3.2E-16 99.2 7.2 79 31-110 58-136 (410)
15 KOG0528 HMG-box transcription 99.1 6.3E-11 1.4E-15 99.9 2.8 80 33-113 321-400 (511)
16 KOG2746 HMG-box transcription 98.7 2.1E-08 4.6E-13 87.6 4.9 80 22-102 166-247 (683)
17 PF14887 HMG_box_5: HMG (high 98.5 1.2E-06 2.6E-11 57.4 7.6 75 37-113 3-77 (85)
18 PF06382 DUF1074: Protein of u 97.8 0.0001 2.3E-09 55.5 7.4 49 42-95 83-131 (183)
19 PF04690 YABBY: YABBY protein; 97.6 0.00016 3.4E-09 54.4 5.8 49 32-81 116-164 (170)
20 COG5648 NHP6B Chromatin-associ 97.2 0.00027 5.8E-09 54.6 3.1 70 34-104 140-209 (211)
21 PF08073 CHDNT: CHDNT (NUC034) 97.0 0.00084 1.8E-08 41.4 3.4 40 42-82 13-52 (55)
22 PF04769 MAT_Alpha1: Mating-ty 95.6 0.035 7.5E-07 42.9 5.7 56 31-93 37-92 (201)
23 PF06244 DUF1014: Protein of u 95.5 0.024 5.2E-07 40.5 4.1 50 33-83 68-117 (122)
24 TIGR03481 HpnM hopanoid biosyn 90.0 1 2.2E-05 34.5 5.8 46 64-109 64-111 (198)
25 PRK15117 ABC transporter perip 87.5 1.9 4.2E-05 33.3 5.8 46 64-109 68-115 (211)
26 KOG3223 Uncharacterized conser 85.7 0.49 1.1E-05 36.4 1.6 50 39-92 166-215 (221)
27 PF05494 Tol_Tol_Ttg2: Toluene 79.9 2.4 5.2E-05 31.2 3.4 45 64-108 38-84 (170)
28 PF12881 NUT_N: NUT protein N 78.6 6.9 0.00015 32.3 5.9 66 42-108 229-295 (328)
29 PHA02608 67 prohead core prote 76.9 8.2 0.00018 25.4 4.7 38 78-115 11-49 (80)
30 PF13875 DUF4202: Domain of un 72.2 8 0.00017 29.6 4.4 40 44-87 131-170 (185)
31 COG2854 Ttg2D ABC-type transpo 63.9 10 0.00022 29.4 3.6 45 70-114 77-122 (202)
32 PF11304 DUF3106: Protein of u 63.2 35 0.00077 23.5 5.9 39 69-107 12-57 (107)
33 PF15243 ANAPC15: Anaphase-pro 53.4 13 0.00029 25.2 2.3 31 75-111 15-45 (92)
34 PF10446 DUF2457: Protein of u 52.3 4 8.7E-05 35.2 -0.4 7 64-70 26-32 (458)
35 PF04871 Uso1_p115_C: Uso1 / p 49.1 15 0.00033 26.5 2.3 9 103-111 100-108 (136)
36 PF01352 KRAB: KRAB box; Inte 47.9 16 0.00034 20.9 1.8 28 66-93 3-31 (41)
37 PRK09706 transcriptional repre 47.8 62 0.0013 22.7 5.3 44 68-111 87-130 (135)
38 PF06945 DUF1289: Protein of u 43.5 36 0.00079 20.2 3.0 25 65-94 23-47 (51)
39 PRK10236 hypothetical protein; 43.0 26 0.00056 27.9 2.8 26 69-94 118-143 (237)
40 PRK12750 cpxP periplasmic repr 41.4 1.1E+02 0.0024 22.9 5.9 33 71-103 128-160 (170)
41 PF09164 VitD-bind_III: Vitami 40.1 99 0.0021 19.7 4.9 33 43-76 9-41 (68)
42 PF00887 ACBP: Acyl CoA bindin 39.6 1.1E+02 0.0023 19.9 5.1 53 45-99 30-86 (87)
43 PRK12751 cpxP periplasmic stre 38.5 84 0.0018 23.4 4.9 31 70-100 120-150 (162)
44 PRK10363 cpxP periplasmic repr 36.8 1E+02 0.0023 23.1 5.1 39 68-107 112-150 (166)
45 KOG1834 Calsyntenin [Extracell 36.5 20 0.00043 32.9 1.4 10 102-111 883-892 (952)
46 KOG0416 Ubiquitin-protein liga 30.3 63 0.0014 24.6 3.0 23 93-115 129-151 (189)
47 TIGR00787 dctP tripartite ATP- 28.8 1.3E+02 0.0029 23.2 4.9 28 74-101 213-240 (257)
48 cd07081 ALDH_F20_ACDH_EutE-lik 28.3 1.5E+02 0.0033 25.3 5.5 44 68-111 6-49 (439)
49 PF12650 DUF3784: Domain of un 28.2 42 0.00091 22.3 1.7 15 77-91 26-40 (97)
50 PTZ00037 DnaJ_C chaperone prot 26.5 1.4E+02 0.0031 25.6 4.9 43 49-91 46-88 (421)
51 KOG3838 Mannose lectin ERGIC-5 25.8 77 0.0017 27.4 3.1 36 80-115 269-304 (497)
52 smart00271 DnaJ DnaJ molecular 25.4 1.3E+02 0.0027 17.4 3.4 34 50-83 20-58 (60)
53 cd07133 ALDH_CALDH_CalB Conife 24.3 2.1E+02 0.0045 24.3 5.6 45 67-111 4-48 (434)
54 KOG1610 Corticosteroid 11-beta 23.9 2.1E+02 0.0046 23.8 5.3 58 47-107 187-256 (322)
55 PRK14291 chaperone protein Dna 23.6 1.6E+02 0.0035 24.7 4.7 41 50-91 22-66 (382)
56 cd07132 ALDH_F3AB Aldehyde deh 23.0 2.1E+02 0.0046 24.3 5.4 44 68-111 5-48 (443)
57 KOG1827 Chromatin remodeling c 22.2 5 0.00011 36.1 -4.8 44 41-85 552-595 (629)
58 COG1638 DctP TRAP-type C4-dica 22.0 2.1E+02 0.0045 23.7 4.9 37 72-108 242-278 (332)
59 PF15581 Imm35: Immunity prote 21.8 1.9E+02 0.004 19.6 3.7 26 65-90 31-56 (93)
60 cd07122 ALDH_F20_ACDH Coenzyme 21.8 2.4E+02 0.0052 24.2 5.4 42 68-109 6-47 (436)
61 PRK10455 periplasmic protein; 21.6 2E+02 0.0044 21.2 4.4 26 69-94 119-144 (161)
62 PRK14296 chaperone protein Dna 21.4 1.8E+02 0.004 24.3 4.6 41 50-91 23-67 (372)
63 PF03480 SBP_bac_7: Bacterial 21.4 1.8E+02 0.0038 22.8 4.4 31 74-104 213-243 (286)
64 cd07085 ALDH_F6_MMSDH Methylma 20.9 2.6E+02 0.0056 24.0 5.5 39 70-108 47-85 (478)
65 cd07087 ALDH_F3-13-14_CALDH-li 20.8 2.5E+02 0.0054 23.7 5.3 43 68-110 5-47 (426)
66 PF05388 Carbpep_Y_N: Carboxyp 20.7 1.6E+02 0.0035 20.6 3.5 29 66-94 45-73 (113)
67 PRK14279 chaperone protein Dna 20.6 1.5E+02 0.0033 25.0 4.0 42 50-92 28-74 (392)
68 KOG0493 Transcription factor E 20.6 3.3E+02 0.0071 22.3 5.6 24 34-60 242-265 (342)
69 PRK10266 curved DNA-binding pr 20.5 2.3E+02 0.005 22.9 4.9 40 50-90 23-66 (306)
70 PF07813 LTXXQ: LTXXQ motif fa 20.4 1.8E+02 0.0039 18.6 3.6 25 67-91 75-99 (100)
71 KOG2880 SMAD6 interacting prot 20.2 4.7E+02 0.01 22.4 6.6 65 42-110 52-119 (424)
72 PF00226 DnaJ: DnaJ domain; I 20.1 1E+02 0.0023 18.2 2.2 36 50-85 19-59 (64)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.94 E-value=2e-26 Score=157.77 Aligned_cols=89 Identities=44% Similarity=0.696 Sum_probs=83.3
Q ss_pred cCCCCccCccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHhHHHHHHHH
Q 032166 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (146)
Q Consensus 18 ~k~~~~~~kk~~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~ 95 (146)
++.+.+.+++++++.+||++||||+|||||||+++|..|..+||+ ++ +++|+++||++|+.||+++|.+|.++|..+
T Consensus 3 ~~~~~~~~k~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~-~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~d 81 (94)
T PTZ00199 3 KKQGKVLVRKNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPE-LAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQED 81 (94)
T ss_pred ccccCccccccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356777778888889999999999999999999999999999999 64 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhH
Q 032166 96 KVEYEKDMKNYN 107 (146)
Q Consensus 96 k~~Y~~e~~~y~ 107 (146)
+.+|..+|..|+
T Consensus 82 k~rY~~e~~~Y~ 93 (94)
T PTZ00199 82 KVRYEKEKAEYA 93 (94)
T ss_pred HHHHHHHHHHHh
Confidence 999999999996
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.86 E-value=8.6e-22 Score=129.83 Aligned_cols=73 Identities=26% Similarity=0.423 Sum_probs=70.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhc
Q 032166 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (146)
Q Consensus 37 ~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~ 110 (146)
.|+||+||||||+++.|..|+.+||+ +++++|+++||.+|+.|++++|++|.++|..++++|..+++.|+-..
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p 73 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPG-LTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKYTP 73 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcccC
Confidence 48999999999999999999999999 99999999999999999999999999999999999999999998643
No 3
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.85 E-value=3.5e-21 Score=125.41 Aligned_cols=69 Identities=33% Similarity=0.552 Sum_probs=67.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhH
Q 032166 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (146)
Q Consensus 38 PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 107 (146)
.|||+||||+||+++|..++.+||+ +++.+|+++||.+|+.||+++|++|.++|..++++|..+++.|+
T Consensus 2 iKrP~naf~~F~~~~r~~~~~~~p~-~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~ 70 (72)
T cd01388 2 IKRPMNAFMLFSKRHRRKVLQEYPL-KENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYK 70 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999986
No 4
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.85 E-value=7.4e-21 Score=122.01 Aligned_cols=69 Identities=42% Similarity=0.758 Sum_probs=65.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhH
Q 032166 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (146)
Q Consensus 38 PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 107 (146)
|+||+|||+|||++++..|+..||+ +++.+|+++||.+|++||+++|.+|.+.|..++.+|..+|..|+
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~-~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPD-LSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTT-STHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcc-cccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999 99999999999999999999999999999999999999999995
No 5
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.84 E-value=1.9e-20 Score=119.04 Aligned_cols=65 Identities=54% Similarity=0.844 Sum_probs=63.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHH
Q 032166 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 103 (146)
Q Consensus 38 PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~ 103 (146)
||+|+|||++|++++|..++..||+ +++.+|++.||.+|+.||+++|.+|.+.|..++.+|..+|
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~-~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPD-ASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999 9999999999999999999999999999999999999887
No 6
>smart00398 HMG high mobility group.
Probab=99.84 E-value=2.8e-20 Score=119.02 Aligned_cols=70 Identities=49% Similarity=0.806 Sum_probs=68.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhH
Q 032166 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (146)
Q Consensus 37 ~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 107 (146)
+|++|+|||++|++++|..+...||+ +++.+|+++||.+|+.|++++|.+|.++|..++.+|..++..|+
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~-~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPD-LSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999 99999999999999999999999999999999999999999884
No 7
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.83 E-value=8.9e-21 Score=144.55 Aligned_cols=89 Identities=34% Similarity=0.710 Sum_probs=84.9
Q ss_pred ccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHH
Q 032166 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (146)
Q Consensus 26 kk~~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~ 105 (146)
+..+++.+||+.||||+||||+|+.++|..|+..+|. ++|.+|+++||++|++|++++|++|...|..++++|+.++..
T Consensus 59 k~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~-l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~ 137 (211)
T COG5648 59 KRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPK-LTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEE 137 (211)
T ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHh
Confidence 5567788999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred hHHhcCCCCC
Q 032166 106 YNRRQAEGTK 115 (146)
Q Consensus 106 y~~k~~~~~~ 115 (146)
|..+++++.-
T Consensus 138 y~~k~~~~~~ 147 (211)
T COG5648 138 YNKKLPNKAP 147 (211)
T ss_pred hhcccCCCCC
Confidence 9999988765
No 8
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.83 E-value=3.9e-20 Score=120.78 Aligned_cols=72 Identities=46% Similarity=0.807 Sum_probs=63.9
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhH
Q 032166 35 PNKPKRPASAFFVFMEEFREQYKKD-HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (146)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~~~~-~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 107 (146)
|++||+|+|||+||+.+++..++.. ++. .++.++++.|+..|++||+++|.+|.++|..++.+|..+|..|+
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~-~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~~ 73 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQK-QSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEWN 73 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T--SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999988 665 78999999999999999999999999999999999999999985
No 9
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.78 E-value=2.3e-18 Score=117.41 Aligned_cols=76 Identities=47% Similarity=0.788 Sum_probs=72.6
Q ss_pred CC--CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHH-HhHHhc
Q 032166 34 DP--NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK-NYNRRQ 110 (146)
Q Consensus 34 dp--~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~-~y~~k~ 110 (146)
+| +.|+||+|||++|+.++|..++..||+ +++.+|+++||.+|++|++++|.+|...|..++.+|..+|. .|+..+
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~-~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~~~~ 95 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPG-LSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYKASL 95 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56 599999999999999999999999999 99999999999999999999999999999999999999999 998754
No 10
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.78 E-value=1.9e-18 Score=109.24 Aligned_cols=65 Identities=51% Similarity=0.812 Sum_probs=63.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHH
Q 032166 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 103 (146)
Q Consensus 38 PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~ 103 (146)
|+||+|||++|++++|..+...||+ +++.+|++.||.+|+.|++++|.+|.++|..++..|..++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~-~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~ 65 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPG-LSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999 8999999999999999999999999999999999999875
No 11
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=99.73 E-value=7.6e-18 Score=142.67 Aligned_cols=79 Identities=46% Similarity=0.731 Sum_probs=74.1
Q ss_pred CccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHH
Q 032166 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (146)
Q Consensus 25 ~kk~~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~ 104 (146)
+.++.|+.+||++||||+||||||++..|..|+.. + +++++|++.+|.+|+.|+. |.+|.+.|+.++++|+.+|.
T Consensus 523 ~~k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--g-i~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~ 597 (615)
T KOG0526|consen 523 KKKKGKKKKDPNAPKRATSAYMLWLNASRESIKED--G-ISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMK 597 (615)
T ss_pred cccCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--C-chHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHH
Confidence 34667788999999999999999999999999987 5 8999999999999999999 99999999999999999999
Q ss_pred HhHH
Q 032166 105 NYNR 108 (146)
Q Consensus 105 ~y~~ 108 (146)
+|+.
T Consensus 598 ~yk~ 601 (615)
T KOG0526|consen 598 EYKN 601 (615)
T ss_pred hhcC
Confidence 9993
No 12
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.72 E-value=6.1e-18 Score=138.20 Aligned_cols=80 Identities=30% Similarity=0.555 Sum_probs=75.2
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhc
Q 032166 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (146)
Q Consensus 31 ~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~ 110 (146)
.+......||||||||+|.+..|.+|..+||. +.+.||+|+||.+|+.|+++||.+|+++|++++..|.+++.+|+.+-
T Consensus 56 ~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~-mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKYRP 134 (331)
T KOG0527|consen 56 DKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPK-MHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKYRP 134 (331)
T ss_pred CCCCccccCCCcchhhhhhHHHHHHHHHhCcc-hhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCccccc
Confidence 44566789999999999999999999999999 99999999999999999999999999999999999999999999765
Q ss_pred C
Q 032166 111 A 111 (146)
Q Consensus 111 ~ 111 (146)
.
T Consensus 135 R 135 (331)
T KOG0527|consen 135 R 135 (331)
T ss_pred c
Confidence 3
No 13
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=99.33 E-value=2.6e-12 Score=104.29 Aligned_cols=77 Identities=25% Similarity=0.443 Sum_probs=70.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhcCCCC
Q 032166 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 114 (146)
Q Consensus 37 ~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~~~~~ 114 (146)
..|+|+||||||+++.|..|..++.- ....+|.++||.+|..||-+|..+|.++|+++++.|..-+..|.+....+.
T Consensus 191 hiKKPLNAFmlyMKEmRa~vvaEctl-KeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSARdNYgK 267 (421)
T KOG3248|consen 191 HIKKPLNAFMLYMKEMRAKVVAECTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGK 267 (421)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhh
Confidence 67899999999999999999999975 567899999999999999999999999999999999999999988765553
No 14
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=99.26 E-value=1.5e-11 Score=99.20 Aligned_cols=79 Identities=25% Similarity=0.562 Sum_probs=74.2
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhc
Q 032166 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (146)
Q Consensus 31 ~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~ 110 (146)
..+.|.+|-+|+-+||.|++..+.+|+..||. +.+.+|.++||.||..|++++|+-|...++..+..|.+.|..|....
T Consensus 58 ~pkpPkppekpl~pymrySrkvWd~VkA~nPe-~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~sp 136 (410)
T KOG4715|consen 58 RPKPPKPPEKPLMPYMRYSRKVWDQVKASNPE-LKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNSP 136 (410)
T ss_pred CCCCCCCCCcccchhhHHhhhhhhhhhccCcc-hHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 34567788899999999999999999999999 99999999999999999999999999999999999999999998754
No 15
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=99.07 E-value=6.3e-11 Score=99.94 Aligned_cols=80 Identities=23% Similarity=0.416 Sum_probs=72.5
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhcCC
Q 032166 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112 (146)
Q Consensus 33 ~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~~~ 112 (146)
..+...||||||||+|.++.|.+|...+|+ +....|+++||.+|+.|+..||++|.+.-.++-..|...++.|+.+-..
T Consensus 321 ss~PHIKRPMNAFMVWAkDERRKILqA~PD-MHNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYrYkPRP 399 (511)
T KOG0528|consen 321 SSEPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYRYKPRP 399 (511)
T ss_pred CCCccccCCcchhhcccchhhhhhhhcCcc-ccccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccccCCCC
Confidence 344577999999999999999999999999 8889999999999999999999999999999988999999999987644
Q ss_pred C
Q 032166 113 G 113 (146)
Q Consensus 113 ~ 113 (146)
+
T Consensus 400 K 400 (511)
T KOG0528|consen 400 K 400 (511)
T ss_pred C
Confidence 3
No 16
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=98.68 E-value=2.1e-08 Score=87.62 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=71.2
Q ss_pred CccCccCCCCCCCCCCCCCCCcHHHHHHHHHH--HHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHH
Q 032166 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFR--EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99 (146)
Q Consensus 22 ~~~~kk~~k~~~dp~~PKrP~say~lF~~e~r--~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y 99 (146)
...+..+-..+++....+||||||+||++.+| ..+...||+ .....|++|||+.|-.|-+.||+.|.++|.+.+..|
T Consensus 166 Ss~kdgrspnkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn-~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ah 244 (683)
T KOG2746|consen 166 SSEKDGRSPNKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPN-QDNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAH 244 (683)
T ss_pred ccccccCCCCcCcchhhhhhhHHHHHHHhhcCCccchhccCcc-ccchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHH
Confidence 33445555666777789999999999999999 889999999 889999999999999999999999999999999998
Q ss_pred HHH
Q 032166 100 EKD 102 (146)
Q Consensus 100 ~~e 102 (146)
.++
T Consensus 245 fka 247 (683)
T KOG2746|consen 245 FKA 247 (683)
T ss_pred hhh
Confidence 887
No 17
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=98.47 E-value=1.2e-06 Score=57.39 Aligned_cols=75 Identities=20% Similarity=0.385 Sum_probs=61.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhcCCC
Q 032166 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113 (146)
Q Consensus 37 ~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~~~~ 113 (146)
.|-.|-||--||.+..+..+...++. -...+ .+.+...|++|++.+|-+|...|.++..+|+.+|.+|+..++..
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~-dr~K~-~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~~~~~~ 77 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRN-DRKKA-LKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRSAPADA 77 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTS-THHHH-HHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-CCCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhH-hHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 57788999999999999999999987 44444 55899999999999999999999999999999999999877643
No 18
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.81 E-value=0.0001 Score=55.46 Aligned_cols=49 Identities=29% Similarity=0.435 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHH
Q 032166 42 ASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (146)
Q Consensus 42 ~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~ 95 (146)
-+||+-|+.++|. .|.+ ++..++....+.+|..|++.+|..|..++...
T Consensus 83 nnaYLNFLReFRr----kh~~-L~p~dlI~~AAraW~rLSe~eK~rYrr~~~~~ 131 (183)
T PF06382_consen 83 NNAYLNFLREFRR----KHCG-LSPQDLIQRAARAWCRLSEAEKNRYRRMAPSV 131 (183)
T ss_pred chHHHHHHHHHHH----HccC-CCHHHHHHHHHHHHHhCCHHHHHHHHhhcchh
Confidence 5789999999765 5667 89999999999999999999999999976644
No 19
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=97.61 E-value=0.00016 Score=54.43 Aligned_cols=49 Identities=29% Similarity=0.430 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCC
Q 032166 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81 (146)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls 81 (146)
.+.|.+-.|-+|||..|+++....|+..||+ ++..|+....+..|...+
T Consensus 116 ~kPPEKRqR~psaYn~f~k~ei~rik~~~p~-ishkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 116 NKPPEKRQRVPSAYNRFMKEEIQRIKAENPD-ISHKEAFSAAAKNWAHFP 164 (170)
T ss_pred cCCccccCCCchhHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHhhhhCc
Confidence 4455666788999999999999999999999 999999999999998775
No 20
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=97.23 E-value=0.00027 Score=54.56 Aligned_cols=70 Identities=23% Similarity=0.342 Sum_probs=63.0
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHH
Q 032166 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (146)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~ 104 (146)
...+|+.|..+|+-|-..+|..+...+|. .+..+++++++..|.+|++.-|.+|.+.+..++..|...++
T Consensus 140 ~k~~~~~~~~~~~e~~~~~r~~~~~~~~~-~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~ 209 (211)
T COG5648 140 KKLPNKAPIGPFIENEPKIRPKVEGPSPD-KALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYP 209 (211)
T ss_pred cccCCCCCCchhhhccHHhccccCCCCcc-hhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhcc
Confidence 34577888999999999999999999998 78899999999999999999999999999999999987664
No 21
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.04 E-value=0.00084 Score=41.37 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=36.3
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCh
Q 032166 42 ASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82 (146)
Q Consensus 42 ~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~ 82 (146)
+|.|-+|.+..|+.|...||+ +..+.|..+++.+|+..+.
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk-~~~sKl~~l~~AKwrEF~~ 52 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPK-APMSKLMMLLQAKWREFQE 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCC-CcHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999 9999999999999987553
No 22
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=95.59 E-value=0.035 Score=42.94 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHH
Q 032166 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93 (146)
Q Consensus 31 ~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~ 93 (146)
.+.....++||+|+||+|..=.- ...|+ ....+++..|+..|..=+. |..|.-+|.
T Consensus 37 ~~~~~~~~kr~lN~Fm~FRsyy~----~~~~~-~~Qk~~S~~l~~lW~~dp~--k~~W~l~ak 92 (201)
T PF04769_consen 37 RKRSPEKAKRPLNGFMAFRSYYS----PIFPP-LPQKELSGILTKLWEKDPF--KNKWSLMAK 92 (201)
T ss_pred ccccccccccchhHHHHHHHHHH----hhcCC-cCHHHHHHHHHHHHhCCcc--HhHHHHHhh
Confidence 34455678999999999986553 44566 7789999999999987443 455655554
No 23
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=95.47 E-value=0.024 Score=40.51 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=43.0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChH
Q 032166 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83 (146)
Q Consensus 33 ~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~ 83 (146)
.|..+-+|-.-||.-|.....+.|+.+||+ +..+++..+|-..|...+++
T Consensus 68 ~drHPErR~KAAy~afeE~~Lp~lK~E~Pg-LrlsQ~kq~l~K~w~KSPeN 117 (122)
T PF06244_consen 68 IDRHPERRMKAAYKAFEERRLPELKEENPG-LRLSQYKQMLWKEWQKSPEN 117 (122)
T ss_pred CCCCcchhHHHHHHHHHHHHhHHHHhhCCC-chHHHHHHHHHHHHhcCCCC
Confidence 444445666689999999999999999999 99999999999999988764
No 24
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=89.97 E-value=1 Score=34.54 Aligned_cols=46 Identities=17% Similarity=0.432 Sum_probs=40.1
Q ss_pred CCHHHHHH-HHHHHhcCCChHhhHhHHHHHHH-HHHHHHHHHHHhHHh
Q 032166 64 KSVAAVGK-AGGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNRR 109 (146)
Q Consensus 64 ~~~~ei~k-~l~~~Wk~ls~~eK~~y~~~A~~-~k~~Y~~e~~~y~~k 109 (146)
..+..+++ .||..|+.+|+++|+.|...... ....|-..+..|...
T Consensus 64 ~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y~~~ 111 (198)
T TIGR03481 64 FDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYAGE 111 (198)
T ss_pred CCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 56777776 68999999999999999999998 678899999999764
No 25
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=87.46 E-value=1.9 Score=33.34 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=39.0
Q ss_pred CCHHHHHH-HHHHHhcCCChHhhHhHHHHHHHH-HHHHHHHHHHhHHh
Q 032166 64 KSVAAVGK-AGGEKWKSMSEADKAPYVAKAEKR-KVEYEKDMKNYNRR 109 (146)
Q Consensus 64 ~~~~ei~k-~l~~~Wk~ls~~eK~~y~~~A~~~-k~~Y~~e~~~y~~k 109 (146)
..+..+++ .||..|+.+|+++|..|....... ..-|-..+..|...
T Consensus 68 ~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~~q 115 (211)
T PRK15117 68 VQVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYHGQ 115 (211)
T ss_pred CCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 56777766 689999999999999999988874 67899999999754
No 26
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.67 E-value=0.49 Score=36.37 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=43.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHH
Q 032166 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92 (146)
Q Consensus 39 KrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A 92 (146)
+|-.-||.-|-....+.|+.+||+ +.++++-.+|-.+|...+++ ||.+.+
T Consensus 166 kRmrAA~~afEe~~LPrLK~e~P~-lrlsQ~Kqll~Kew~KsPDN---P~Nq~~ 215 (221)
T KOG3223|consen 166 KRMRAAFKAFEEARLPRLKKENPG-LRLSQYKQLLKKEWQKSPDN---PFNQAA 215 (221)
T ss_pred HHHHHHHHHHHHhhchhhhhcCCC-ccHHHHHHHHHHHHhhCCCC---hhhHHh
Confidence 555678999999999999999999 99999999999999998876 666544
No 27
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=79.85 E-value=2.4 Score=31.25 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=35.1
Q ss_pred CCHHHHHH-HHHHHhcCCChHhhHhHHHHHHH-HHHHHHHHHHHhHH
Q 032166 64 KSVAAVGK-AGGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNR 108 (146)
Q Consensus 64 ~~~~ei~k-~l~~~Wk~ls~~eK~~y~~~A~~-~k~~Y~~e~~~y~~ 108 (146)
..+..+++ .||..|+.||+++++.|...... ....|-..+..|..
T Consensus 38 ~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~~ 84 (170)
T PF05494_consen 38 FDFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYSG 84 (170)
T ss_dssp B-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-SS
T ss_pred CCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 56777766 47889999999999999998887 46778888999885
No 28
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=78.58 E-value=6.9 Score=32.29 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHH-HHHHHhHH
Q 032166 42 ASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE-KDMKNYNR 108 (146)
Q Consensus 42 ~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~-~e~~~y~~ 108 (146)
..||-+|+.-....+....|. ++.-|-..+.-+.|...|.=+|..|+++|++-.+-=. ++|+.-+-
T Consensus 229 ~EAlSCFLIpvLrsLar~kPt-MtlEeGl~ra~qEW~~~SnfdRmifyemaekFmEFEaeEEmq~q~l 295 (328)
T PF12881_consen 229 AEALSCFLIPVLRSLARLKPT-MTLEEGLWRAVQEWQHTSNFDRMIFYEMAEKFMEFEAEEEMQIQKL 295 (328)
T ss_pred hhhhhhhHHHHHHHHHhcCCC-ccHHHHHHHHHHHhhccccccHHHHHHHHHHHccCCcHHHHHHHHH
Confidence 345555555555555566677 7888888888899999999999999999998653222 34444433
No 29
>PHA02608 67 prohead core protein; Provisional
Probab=76.93 E-value=8.2 Score=25.39 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=22.2
Q ss_pred cCCChHhhHhHHHHHHHHHHHHHHHHHHhHHh-cCCCCC
Q 032166 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR-QAEGTK 115 (146)
Q Consensus 78 k~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k-~~~~~~ 115 (146)
+.|-...|..|..++.+--..++.+..+.-.. +.++..
T Consensus 11 ~DLV~akK~F~~~Me~rt~~li~e~k~eIA~sv~iEGEe 49 (80)
T PHA02608 11 GDLVEAKKEFASIMEARTEALIEEEKVEIARSVMIEGEE 49 (80)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 45666777777777776655555554444333 444544
No 30
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=72.22 E-value=8 Score=29.58 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHh
Q 032166 44 AFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87 (146)
Q Consensus 44 ay~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~ 87 (146)
+-++|+..+...+...|.. ..+..+|..-|+.||+..++.
T Consensus 131 acLVFL~~~f~~F~~~~de----eK~v~Il~KTw~KMS~~g~~~ 170 (185)
T PF13875_consen 131 ACLVFLEYYFEDFAAKHDE----EKIVDILRKTWRKMSERGHEA 170 (185)
T ss_pred HHHHhHHHHHHHHHhcCCH----HHHHHHHHHHHHHCCHHHHHH
Confidence 5788999999999888833 578899999999999988753
No 31
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.87 E-value=10 Score=29.42 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCChHhhHhHHHHHHH-HHHHHHHHHHHhHHhcCCCC
Q 032166 70 GKAGGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNRRQAEGT 114 (146)
Q Consensus 70 ~k~l~~~Wk~ls~~eK~~y~~~A~~-~k~~Y~~e~~~y~~k~~~~~ 114 (146)
...||.-|+.+|+++++.|...... ....|-..|..|+.+.....
T Consensus 77 ~~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~~Y~~q~~~v~ 122 (202)
T COG2854 77 KLVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLDYKGQTLKVK 122 (202)
T ss_pred HHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCceeC
Confidence 3458899999999999999998887 46789999999998765433
No 32
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=63.19 E-value=35 Score=23.49 Aligned_cols=39 Identities=15% Similarity=0.402 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCChHhhHhHHHHHHH-------HHHHHHHHHHHhH
Q 032166 69 VGKAGGEKWKSMSEADKAPYVAKAEK-------RKVEYEKDMKNYN 107 (146)
Q Consensus 69 i~k~l~~~Wk~ls~~eK~~y~~~A~~-------~k~~Y~~e~~~y~ 107 (146)
+..-+...|+.|++..+..+...|.. ...++...|..|.
T Consensus 12 ~L~pl~~~W~~l~~~qr~k~l~~a~r~~~mspeqq~r~~~rm~~W~ 57 (107)
T PF11304_consen 12 ALAPLAERWNSLPPEQRRKWLQIAERWPSMSPEQQQRLRERMRRWA 57 (107)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 44445555555555555554444432 3444444444444
No 33
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=53.44 E-value=13 Score=25.20 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=19.0
Q ss_pred HHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhcC
Q 032166 75 EKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (146)
Q Consensus 75 ~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~~ 111 (146)
..|=+|. +|+.+.+.. .+++.++++|.....
T Consensus 15 ~lwf~~d----~pc~dE~EL--~~~Eq~~q~Wl~sI~ 45 (92)
T PF15243_consen 15 PLWFNLD----RPCVDETEL--QQQEQQHQAWLQSIA 45 (92)
T ss_pred cccccCC----CccchHHHH--HHHHHHHHHHHHHHH
Confidence 4577775 566665553 356667777766543
No 34
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=52.27 E-value=4 Score=35.17 Aligned_cols=7 Identities=0% Similarity=-0.116 Sum_probs=2.9
Q ss_pred CCHHHHH
Q 032166 64 KSVAAVG 70 (146)
Q Consensus 64 ~~~~ei~ 70 (146)
+++.+.+
T Consensus 26 lTi~Dtl 32 (458)
T PF10446_consen 26 LTINDTL 32 (458)
T ss_pred ccHHHHH
Confidence 3444443
No 35
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=49.08 E-value=15 Score=26.48 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=4.1
Q ss_pred HHHhHHhcC
Q 032166 103 MKNYNRRQA 111 (146)
Q Consensus 103 ~~~y~~k~~ 111 (146)
+..|+..+.
T Consensus 100 ~~kyk~rLk 108 (136)
T PF04871_consen 100 RKKYKERLK 108 (136)
T ss_pred HHHHHHHHH
Confidence 344555444
No 36
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=47.94 E-value=16 Score=20.89 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=15.9
Q ss_pred HHHHHHHHH-HHhcCCChHhhHhHHHHHH
Q 032166 66 VAAVGKAGG-EKWKSMSEADKAPYVAKAE 93 (146)
Q Consensus 66 ~~ei~k~l~-~~Wk~ls~~eK~~y~~~A~ 93 (146)
|.+|+.-++ +.|..|.+.+|.-|.+...
T Consensus 3 f~Dvav~fs~eEW~~L~~~Qk~ly~dvm~ 31 (41)
T PF01352_consen 3 FEDVAVYFSQEEWELLDPAQKNLYRDVML 31 (41)
T ss_dssp ----TT---HHHHHTS-HHHHHHHHHHHH
T ss_pred EEEEEEEcChhhcccccceecccchhHHH
Confidence 445554444 5599999999999987654
No 37
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=47.80 E-value=62 Score=22.72 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhcC
Q 032166 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (146)
Q Consensus 68 ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~~ 111 (146)
.-...|-..|+.|+++++.............|..-+++|-.+..
T Consensus 87 ~~~~~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 130 (135)
T PRK09706 87 EDQKELLELFDALPESEQDAQLSEMRARVENFNKLFEELLKARK 130 (135)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999999987643
No 38
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=43.52 E-value=36 Score=20.20 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHhcCCChHhhHhHHHHHHH
Q 032166 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94 (146)
Q Consensus 65 ~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~ 94 (146)
+..||.. |..|++++|.........
T Consensus 23 T~dEI~~-----W~~~s~~er~~i~~~l~~ 47 (51)
T PF06945_consen 23 TLDEIRD-----WKSMSDDERRAILARLRA 47 (51)
T ss_pred cHHHHHH-----HhhCCHHHHHHHHHHHHH
Confidence 5566665 999999998876655443
No 39
>PRK10236 hypothetical protein; Provisional
Probab=43.01 E-value=26 Score=27.88 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCChHhhHhHHHHHHH
Q 032166 69 VGKAGGEKWKSMSEADKAPYVAKAEK 94 (146)
Q Consensus 69 i~k~l~~~Wk~ls~~eK~~y~~~A~~ 94 (146)
+.+++...|..||+++++.+...-..
T Consensus 118 l~kll~~a~~kms~eE~~~L~~~l~~ 143 (237)
T PRK10236 118 LEQFLRNTWKKMDEEHKQEFLHAVDA 143 (237)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHhh
Confidence 67889999999999999888765443
No 40
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=41.40 E-value=1.1e+02 Score=22.87 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=27.9
Q ss_pred HHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHH
Q 032166 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 103 (146)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~ 103 (146)
+..-+++..|++++|..|.++..+-...+...+
T Consensus 128 ~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~ 160 (170)
T PRK12750 128 EKRHQMLSILTPEQKAKFQELQQERMQECQDKM 160 (170)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568999999999999999988888888777
No 41
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=40.12 E-value=99 Score=19.74 Aligned_cols=33 Identities=9% Similarity=0.260 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 032166 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76 (146)
Q Consensus 43 say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~ 76 (146)
+.|.-|-+.....++...|+ .+..+|..++.++
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~-at~~~l~~lve~R 41 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPD-ATPTELKELVEKR 41 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TT-S-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHH
Confidence 46788888889999999999 8888888777654
No 42
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=39.57 E-value=1.1e+02 Score=19.91 Aligned_cols=53 Identities=15% Similarity=0.310 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCC----hHhhHhHHHHHHHHHHHH
Q 032166 45 FFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS----EADKAPYVAKAEKRKVEY 99 (146)
Q Consensus 45 y~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls----~~eK~~y~~~A~~~k~~Y 99 (146)
|-||.+.....+....|+...+... .--..|+.|. ++-++.|..........|
T Consensus 30 YalyKQAt~Gd~~~~~P~~~d~~~~--~K~~AW~~l~gms~~eA~~~Yi~~v~~~~~~~ 86 (87)
T PF00887_consen 30 YALYKQATHGDCDTPRPGFFDIEGR--AKWDAWKALKGMSKEEAMREYIELVEELIPKY 86 (87)
T ss_dssp HHHHHHHHTSS--S-CTTTTCHHHH--HHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCCCcchhHHHH--HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 6677776655555556663333333 3356798776 444566777666665554
No 43
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=38.49 E-value=84 Score=23.41 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCChHhhHhHHHHHHHHHHHHH
Q 032166 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 100 (146)
Q Consensus 70 ~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~ 100 (146)
.+..-++++.|++++|..|.+..++-.....
T Consensus 120 ~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~ 150 (162)
T PRK12751 120 AKVRNQMYNLLTPEQKEALNKKHQERIEKLQ 150 (162)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4455678899999999999988776655553
No 44
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=36.85 E-value=1e+02 Score=23.14 Aligned_cols=39 Identities=10% Similarity=0.268 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhH
Q 032166 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (146)
Q Consensus 68 ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 107 (146)
+..++--++++-|++++|..|......-...+.. +..+.
T Consensus 112 em~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~-~~~~q 150 (166)
T PRK10363 112 EMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRD-VTQWQ 150 (166)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHhcC
Confidence 4566677899999999999999888877766644 44443
No 45
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=36.47 E-value=20 Score=32.86 Aligned_cols=10 Identities=20% Similarity=0.584 Sum_probs=5.5
Q ss_pred HHHHhHHhcC
Q 032166 102 DMKNYNRRQA 111 (146)
Q Consensus 102 e~~~y~~k~~ 111 (146)
-|..|.....
T Consensus 883 Pme~~e~~gs 892 (952)
T KOG1834|consen 883 PMEDYEKGGS 892 (952)
T ss_pred chHhcccCCc
Confidence 4566666443
No 46
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.33 E-value=63 Score=24.55 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhHHhcCCCCC
Q 032166 93 EKRKVEYEKDMKNYNRRQAEGTK 115 (146)
Q Consensus 93 ~~~k~~Y~~e~~~y~~k~~~~~~ 115 (146)
..+.+.|.+.+.+|-++.+...+
T Consensus 129 l~~~~~Y~~~v~eY~~kYA~~~~ 151 (189)
T KOG0416|consen 129 LRDPEEYEEKVKEYIKKYATPEA 151 (189)
T ss_pred hcCHHHHHHHHHHHHHHhcChhh
Confidence 34578899999999988876654
No 47
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=28.79 E-value=1.3e+02 Score=23.22 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=21.8
Q ss_pred HHHhcCCChHhhHhHHHHHHHHHHHHHH
Q 032166 74 GEKWKSMSEADKAPYVAKAEKRKVEYEK 101 (146)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~ 101 (146)
...|..||++.|....+.+...-..+..
T Consensus 213 ~~~~~~L~~e~q~~i~~a~~~~~~~~~~ 240 (257)
T TIGR00787 213 KAFWKSLPPDLQAVVKEAAKEAGEYQRK 240 (257)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 5779999999999998877776544443
No 48
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=28.32 E-value=1.5e+02 Score=25.33 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhcC
Q 032166 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (146)
Q Consensus 68 ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~~ 111 (146)
+.++..-..|+.++..+|..+...+....+.+..++........
T Consensus 6 ~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~E~ 49 (439)
T cd07081 6 AAAKVAQQGLSCKSQEMVDLIFRAAAEAAEDARIDLAKLAVSET 49 (439)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555667899999999999999999999999999888765543
No 49
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=28.20 E-value=42 Score=22.29 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=13.1
Q ss_pred hcCCChHhhHhHHHH
Q 032166 77 WKSMSEADKAPYVAK 91 (146)
Q Consensus 77 Wk~ls~~eK~~y~~~ 91 (146)
|+.||++||+.|...
T Consensus 26 yntms~eEk~~~D~~ 40 (97)
T PF12650_consen 26 YNTMSKEEKEKYDKK 40 (97)
T ss_pred cccCCHHHHHHhhHH
Confidence 899999999999754
No 50
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=26.53 E-value=1.4e+02 Score=25.56 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHH
Q 032166 49 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91 (146)
Q Consensus 49 ~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~ 91 (146)
-+.+|...++-||+.....+..+.|.+.|..|++.+|...++.
T Consensus 46 KkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 46 KKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 3556667778899932345788899999999998886655554
No 51
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.76 E-value=77 Score=27.35 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=27.9
Q ss_pred CChHhhHhHHHHHHHHHHHHHHHHHHhHHhcCCCCC
Q 032166 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115 (146)
Q Consensus 80 ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~~~~~~ 115 (146)
+.+.+|++|.+..+.....|.++..+|++.+++.-.
T Consensus 269 ~qe~ek~kyqeEfe~~q~elek~k~efkk~hpd~~~ 304 (497)
T KOG3838|consen 269 MQELEKAKYQEEFEWAQLELEKRKDEFKKSHPDAQG 304 (497)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhHhhhccCCchhhc
Confidence 445678888888888888888888888888775433
No 52
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=25.39 E-value=1.3e+02 Score=17.44 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCCCC-----HHHHHHHHHHHhcCCChH
Q 032166 50 EEFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEA 83 (146)
Q Consensus 50 ~e~r~~~~~~~p~~~~-----~~ei~k~l~~~Wk~ls~~ 83 (146)
+..+..++.-||+... ..+....|...|..|.+.
T Consensus 20 ~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 20 KAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred HHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence 3345555667888333 346677777777777654
No 53
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=24.33 E-value=2.1e+02 Score=24.30 Aligned_cols=45 Identities=7% Similarity=-0.074 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhcC
Q 032166 67 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (146)
Q Consensus 67 ~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~~ 111 (146)
-+.++..-..|+.++..+|..+...+....+.+..++........
T Consensus 4 ~~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~ 48 (434)
T cd07133 4 LERQKAAFLANPPPSLEERRDRLDRLKALLLDNQDALAEAISADF 48 (434)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667899999999999999999999999999888765443
No 54
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=23.88 E-value=2.1e+02 Score=23.79 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhC-------CCC-----CCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhH
Q 032166 47 VFMEEFREQYKKDH-------PKN-----KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (146)
Q Consensus 47 lF~~e~r~~~~~~~-------p~~-----~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 107 (146)
.|+...|.++..-. |+. .....+.+.+.++|..|+++.|+-|-+.+..+ |...+..|.
T Consensus 187 af~D~lR~EL~~fGV~VsiiePG~f~T~l~~~~~~~~~~~~~w~~l~~e~k~~YGedy~~~---~~~~~~~~~ 256 (322)
T KOG1610|consen 187 AFSDSLRRELRPFGVKVSIIEPGFFKTNLANPEKLEKRMKEIWERLPQETKDEYGEDYFED---YKKSLEKYL 256 (322)
T ss_pred HHHHHHHHHHHhcCcEEEEeccCccccccCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---HHHHHHhhh
Confidence 36666666665321 321 24577889999999999999999998777644 444444444
No 55
>PRK14291 chaperone protein DnaJ; Provisional
Probab=23.58 E-value=1.6e+02 Score=24.68 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHhcCCChHhhHhHHHH
Q 032166 50 EEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVAK 91 (146)
Q Consensus 50 ~e~r~~~~~~~p~~~~----~~ei~k~l~~~Wk~ls~~eK~~y~~~ 91 (146)
+.+|...+.-||+ .+ ..+..+.|.+.|..|++..|..-.+.
T Consensus 22 ~ayr~la~~~HPD-~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~ 66 (382)
T PRK14291 22 KAYRRLARKYHPD-FNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQ 66 (382)
T ss_pred HHHHHHHHHHCCC-CCCCccHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 4456666777888 43 35778899999999998876554443
No 56
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=22.96 E-value=2.1e+02 Score=24.34 Aligned_cols=44 Identities=7% Similarity=-0.073 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhcC
Q 032166 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (146)
Q Consensus 68 ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~~ 111 (146)
+.++..-..|..++..+|..+...+....+.+..++..-.....
T Consensus 5 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~ 48 (443)
T cd07132 5 RRAREAFSSGKTRPLEFRIQQLEALLRMLEENEDEIVEALAKDL 48 (443)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 44556667899999999999999999999999988888765543
No 57
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=22.22 E-value=5 Score=36.12 Aligned_cols=44 Identities=16% Similarity=0.276 Sum_probs=39.6
Q ss_pred CCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhh
Q 032166 41 PASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85 (146)
Q Consensus 41 P~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK 85 (146)
-+++|++|+.+.+..+...+|+ ..+++++.++|.-|..|+...|
T Consensus 552 ~~~~~~~~s~~~~~~~~~~np~-v~~~~~~~~vg~~~~~lp~~~k 595 (629)
T KOG1827|consen 552 SPEPYILDSIENRTIIWFENPT-VGFGEVSIIVGNDWDKLPNINK 595 (629)
T ss_pred CCccccccccccCceeeeeCCC-cccceeEEeecCCcccCccccc
Confidence 5788999999999999999999 8999999999999999994333
No 58
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=22.04 E-value=2.1e+02 Score=23.68 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=28.3
Q ss_pred HHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHH
Q 032166 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (146)
Q Consensus 72 ~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~ 108 (146)
+-...|..||++.|....+.|.+..........++..
T Consensus 242 ~s~~~w~~L~~e~q~il~~aa~e~~~~~~~~~~~~e~ 278 (332)
T COG1638 242 VSKAFWDSLPEEDQTILLEAAKEAAEEQRKLVEELED 278 (332)
T ss_pred EcHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999988876666655555444
No 59
>PF15581 Imm35: Immunity protein 35
Probab=21.79 E-value=1.9e+02 Score=19.57 Aligned_cols=26 Identities=8% Similarity=0.240 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHhcCCChHhhHhHHH
Q 032166 65 SVAAVGKAGGEKWKSMSEADKAPYVA 90 (146)
Q Consensus 65 ~~~ei~k~l~~~Wk~ls~~eK~~y~~ 90 (146)
+..-+..+|...|+.|+.++=..-..
T Consensus 31 ~i~~l~~lIe~eWRGl~~~qV~~kl~ 56 (93)
T PF15581_consen 31 TIRNLESLIEHEWRGLPEEQVLYKLE 56 (93)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45567889999999999886544333
No 60
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=21.76 E-value=2.4e+02 Score=24.19 Aligned_cols=42 Identities=5% Similarity=0.113 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHh
Q 032166 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (146)
Q Consensus 68 ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k 109 (146)
+.++..-..|..++..+|..+...+......+..++......
T Consensus 6 ~~A~~A~~~W~~~~~~eR~~~L~~~a~~l~~~~eela~~~~~ 47 (436)
T cd07122 6 ERARKAQREFATFSQEQVDKIVEAVAWAAADAAEELAKMAVE 47 (436)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667999999999999999999999999988877644
No 61
>PRK10455 periplasmic protein; Reviewed
Probab=21.61 E-value=2e+02 Score=21.25 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCChHhhHhHHHHHHH
Q 032166 69 VGKAGGEKWKSMSEADKAPYVAKAEK 94 (146)
Q Consensus 69 i~k~l~~~Wk~ls~~eK~~y~~~A~~ 94 (146)
..+....++..|++++|..|.+..++
T Consensus 119 ~~~~~~qiy~vLTPEQr~q~~~~~ek 144 (161)
T PRK10455 119 HMETQNKIYNVLTPEQKKQFNANFEK 144 (161)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455678999999999998876543
No 62
>PRK14296 chaperone protein DnaJ; Provisional
Probab=21.39 E-value=1.8e+02 Score=24.30 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHhcCCChHhhHhHHHH
Q 032166 50 EEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVAK 91 (146)
Q Consensus 50 ~e~r~~~~~~~p~~~~----~~ei~k~l~~~Wk~ls~~eK~~y~~~ 91 (146)
+.+|...++-||+ .+ ..+..+.|.+.|..|++.+|..-.+.
T Consensus 23 ~ayrkla~~~HPD-~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~ 67 (372)
T PRK14296 23 QAYRKLAKQYHPD-LNKSPDAHDKMVEINEAADVLLDKDKRKQYDQ 67 (372)
T ss_pred HHHHHHHHHHCcC-CCCCchHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 3445555677888 43 44677889999999998887654444
No 63
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=21.39 E-value=1.8e+02 Score=22.85 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=21.7
Q ss_pred HHHhcCCChHhhHhHHHHHHHHHHHHHHHHH
Q 032166 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (146)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~ 104 (146)
...|..||++.|+.+.+.+.+....+...+.
T Consensus 213 ~~~w~~L~~e~q~~l~~~~~~~~~~~~~~~~ 243 (286)
T PF03480_consen 213 KDWWDSLPDEDQEALDDAADEAEARAREYYE 243 (286)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999887776544444333
No 64
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=20.94 E-value=2.6e+02 Score=23.97 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHH
Q 032166 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (146)
Q Consensus 70 ~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~ 108 (146)
++.....|+.++..+|..+...+......+..++..-..
T Consensus 47 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~ 85 (478)
T cd07085 47 AKAAFPAWSATPVLKRQQVMFKFRQLLEENLDELARLIT 85 (478)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556799999999999999999888888877776543
No 65
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=20.78 E-value=2.5e+02 Score=23.67 Aligned_cols=43 Identities=12% Similarity=-0.086 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhc
Q 032166 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (146)
Q Consensus 68 ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~ 110 (146)
+.++..-..|..++..+|..+...+....+.+..++.......
T Consensus 5 ~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e 47 (426)
T cd07087 5 ARLRETFLTGKTRSLEWRKAQLKALKRMLTENEEEIAAALYAD 47 (426)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455566779999999999999999999999998888776543
No 66
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=20.71 E-value=1.6e+02 Score=20.57 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCChHhhHhHHHHHHH
Q 032166 66 VAAVGKAGGEKWKSMSEADKAPYVAKAEK 94 (146)
Q Consensus 66 ~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~ 94 (146)
+.-+++.+++.++.|+.+-|+.|.++...
T Consensus 45 ~~~~~~~l~e~l~~Lt~e~k~~W~E~~~~ 73 (113)
T PF05388_consen 45 LEKISKYLNEPLKSLTSEAKALWDEMMLL 73 (113)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45577778999999999999999998875
No 67
>PRK14279 chaperone protein DnaJ; Provisional
Probab=20.62 E-value=1.5e+02 Score=24.95 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCCC-----HHHHHHHHHHHhcCCChHhhHhHHHHH
Q 032166 50 EEFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEADKAPYVAKA 92 (146)
Q Consensus 50 ~e~r~~~~~~~p~~~~-----~~ei~k~l~~~Wk~ls~~eK~~y~~~A 92 (146)
+.+|...+.-||+ .+ ..+..+.|.+.|..|++.+|..-.+.+
T Consensus 28 ~ayr~la~~~HPD-~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~ 74 (392)
T PRK14279 28 KAYRKLARELHPD-ANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDET 74 (392)
T ss_pred HHHHHHHHHHCcC-CCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHh
Confidence 3456666778998 42 346778899999999988876555543
No 68
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=20.58 E-value=3.3e+02 Score=22.33 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=14.0
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhC
Q 032166 34 DPNKPKRPASAFFVFMEEFREQYKKDH 60 (146)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~~~~~ 60 (146)
..+--|||+|||. .++...|+.++
T Consensus 242 ~~~eeKRPRTAFt---aeQL~RLK~EF 265 (342)
T KOG0493|consen 242 SSKEEKRPRTAFT---AEQLQRLKAEF 265 (342)
T ss_pred ccchhcCcccccc---HHHHHHHHHHH
Confidence 3445589999964 44444454444
No 69
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=20.53 E-value=2.3e+02 Score=22.89 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHhcCCChHhhHhHHH
Q 032166 50 EEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVA 90 (146)
Q Consensus 50 ~e~r~~~~~~~p~~~~----~~ei~k~l~~~Wk~ls~~eK~~y~~ 90 (146)
+.+|...+.-||+ .+ ..+..+.|.+.|..|++..+..-.+
T Consensus 23 ~ayr~la~k~HPD-~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD 66 (306)
T PRK10266 23 TAYRRLARKYHPD-VSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66 (306)
T ss_pred HHHHHHHHHHCcC-CCCCccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3455556777888 43 5678889999999999766554433
No 70
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=20.42 E-value=1.8e+02 Score=18.58 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCChHhhHhHHHH
Q 032166 67 AAVGKAGGEKWKSMSEADKAPYVAK 91 (146)
Q Consensus 67 ~ei~k~l~~~Wk~ls~~eK~~y~~~ 91 (146)
..+.......+..|++++|..|..+
T Consensus 75 ~~~~~~~~~~~~vLt~eQk~~~~~l 99 (100)
T PF07813_consen 75 EERAKAQHALYAVLTPEQKEKFDQL 99 (100)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 3566677889999999999988754
No 71
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=20.25 E-value=4.7e+02 Score=22.38 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=36.3
Q ss_pred CcHHHHHHHHH---HHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhc
Q 032166 42 ASAFFVFMEEF---REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (146)
Q Consensus 42 ~say~lF~~e~---r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~ 110 (146)
-+||+||.+=. ..++ ..||+ . ..+....-...+.|-+..-..-..+..+++.+|..++.+|....
T Consensus 52 enafvLy~ry~tLfiEki-pkHrD-y--~s~k~ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~K 119 (424)
T KOG2880|consen 52 ENAFVLYLRYITLFIEKI-PKHRD-Y--RSVKPEKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHSK 119 (424)
T ss_pred chhhhHHHHHHHHHHHhc-ccCcc-h--hhhchhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 46777765322 2222 24555 2 22323333333344455555566777788889999888887654
No 72
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=20.09 E-value=1e+02 Score=18.22 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCC-CH----HHHHHHHHHHhcCCChHhh
Q 032166 50 EEFREQYKKDHPKNK-SV----AAVGKAGGEKWKSMSEADK 85 (146)
Q Consensus 50 ~e~r~~~~~~~p~~~-~~----~ei~k~l~~~Wk~ls~~eK 85 (146)
+..+..++.-||+.. .. .++...|...|..|+...+
T Consensus 19 ~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~ 59 (64)
T PF00226_consen 19 KAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPER 59 (64)
T ss_dssp HHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHH
Confidence 445556677788832 22 3688889999999876655
Done!