Query 032166
Match_columns 146
No_of_seqs 239 out of 1094
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:57:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 7.9E-27 2.7E-31 160.8 12.6 90 25-115 5-94 (102)
2 2eqz_A High mobility group pro 99.9 9.5E-26 3.2E-30 150.7 11.8 79 28-107 6-86 (86)
3 1k99_A Upstream binding factor 99.9 2.7E-26 9.4E-31 157.4 9.0 84 29-113 2-85 (99)
4 1hme_A High mobility group pro 99.9 1.1E-25 3.8E-30 147.2 7.8 76 32-108 1-76 (77)
5 1cg7_A Protein (NON histone pr 99.9 3.3E-26 1.1E-30 155.1 5.4 83 27-110 10-92 (93)
6 2e6o_A HMG box-containing prot 99.9 3E-25 1E-29 148.7 8.7 77 30-107 10-86 (87)
7 2crj_A SWI/SNF-related matrix- 99.9 7.6E-25 2.6E-29 148.1 10.6 78 32-110 2-79 (92)
8 2lhj_A High mobility group pro 99.9 4.4E-26 1.5E-30 155.6 4.5 83 27-110 12-96 (97)
9 1wgf_A Upstream binding factor 99.9 7.5E-26 2.6E-30 152.5 4.9 80 25-105 8-87 (90)
10 2cs1_A PMS1 protein homolog 1; 99.9 7.9E-25 2.7E-29 148.0 9.4 80 32-112 2-81 (92)
11 3nm9_A HMG-D, high mobility gr 99.9 2.4E-24 8.1E-29 139.7 9.8 72 35-109 1-72 (73)
12 1aab_A High mobility group pro 99.9 4E-25 1.4E-29 146.6 5.2 78 32-110 2-81 (83)
13 1hry_A Human SRY; DNA, DNA-bin 99.9 1.3E-24 4.5E-29 141.7 6.7 74 34-108 1-74 (76)
14 1wxl_A Single-strand recogniti 99.9 4.3E-24 1.5E-28 138.5 7.7 72 35-109 1-72 (73)
15 1ckt_A High mobility group 1 p 99.9 1.1E-23 3.7E-28 135.6 8.0 69 37-106 1-71 (71)
16 1j46_A SRY, sex-determining re 99.9 1.5E-23 5.2E-28 139.7 8.8 76 34-110 1-76 (85)
17 2gzk_A Sex-determining region 99.9 2.9E-23 9.8E-28 152.6 10.8 79 29-108 80-158 (159)
18 1wz6_A HMG-box transcription f 99.9 4.4E-24 1.5E-28 141.3 5.3 77 33-110 3-79 (82)
19 4a3n_A Transcription factor SO 99.9 9.1E-24 3.1E-28 135.7 6.3 71 36-107 1-71 (71)
20 1v64_A Nucleolar transcription 99.9 5.1E-23 1.8E-27 143.1 10.5 81 27-112 6-87 (108)
21 1gt0_D Transcription factor SO 99.9 3.2E-23 1.1E-27 136.4 8.1 74 36-110 1-74 (80)
22 3f27_D Transcription factor SO 99.9 2.8E-23 9.5E-28 137.5 7.6 75 34-109 3-77 (83)
23 4euw_A Transcription factor SO 99.9 3.7E-23 1.3E-27 143.3 8.6 80 30-110 22-101 (106)
24 2lef_A LEF-1 HMG, protein (lym 99.9 5.9E-23 2E-27 137.0 8.7 75 36-111 1-75 (86)
25 3u2b_C Transcription factor SO 99.9 5.2E-23 1.8E-27 134.9 7.2 73 36-109 1-73 (79)
26 2yrq_A High mobility group pro 99.9 1.8E-22 6E-27 150.4 10.9 80 29-109 93-172 (173)
27 1i11_A Transcription factor SO 99.9 6.4E-23 2.2E-27 135.3 6.6 74 35-109 2-75 (81)
28 1l8y_A Upstream binding factor 99.9 2.1E-22 7.2E-27 135.8 8.9 75 36-112 3-77 (91)
29 3fgh_A Transcription factor A, 99.9 1.1E-22 3.7E-27 129.7 6.8 66 36-106 1-66 (67)
30 2yrq_A High mobility group pro 99.9 9.9E-22 3.4E-26 146.3 10.4 84 28-111 6-90 (173)
31 1v63_A Nucleolar transcription 99.9 1.4E-21 4.9E-26 134.3 10.4 80 33-115 4-83 (101)
32 2d7l_A WD repeat and HMG-box D 99.8 1.5E-21 5.1E-26 129.3 6.7 61 34-95 2-63 (81)
33 3tmm_A Transcription factor A, 99.8 5.9E-21 2E-25 149.1 8.4 80 31-111 35-114 (238)
34 3tq6_A Transcription factor A, 99.8 1.8E-20 6E-25 144.3 9.4 77 34-111 6-82 (214)
35 2yuk_A Myeloid/lymphoid or mix 99.8 9.1E-22 3.1E-26 132.6 -0.2 68 30-102 15-84 (90)
36 2cto_A Novel protein; high mob 99.8 1.3E-20 4.4E-25 127.8 4.6 70 32-104 5-77 (93)
37 3tq6_A Transcription factor A, 99.8 2.5E-21 8.6E-26 149.0 -0.4 81 29-114 106-186 (214)
38 3tmm_A Transcription factor A, 99.8 4.2E-21 1.4E-25 149.9 -0.8 81 29-114 138-218 (238)
39 2gzk_A Sex-determining region 99.8 2.1E-18 7.1E-23 126.5 8.0 74 35-109 2-75 (159)
40 2qgu_A Probable signal peptide 73.6 2.9 9.9E-05 31.1 3.5 47 64-110 72-120 (211)
41 2yua_A Williams-beuren syndrom 37.1 73 0.0025 20.1 5.0 38 50-87 36-77 (99)
42 1j1d_B Troponin T, TNT; THIN f 36.2 93 0.0032 20.6 6.0 53 47-102 28-80 (106)
43 2nqb_D Histone H2B; nucleosome 32.7 46 0.0016 22.8 3.5 18 42-62 32-49 (123)
44 2o37_A Protein SIS1; HSP40, J- 27.9 84 0.0029 19.6 4.1 39 50-88 27-66 (92)
45 1tzy_B Histone H2B; histone-fo 27.4 58 0.002 22.4 3.3 19 41-62 34-52 (126)
46 3mhp_C TIC62_peptide, ferredox 26.3 8 0.00027 19.2 -0.9 11 38-48 2-12 (26)
47 2och_A Hypothetical protein DN 24.8 81 0.0028 18.6 3.4 37 50-86 27-64 (73)
48 3o39_A Periplasmic protein rel 24.7 93 0.0032 20.5 3.9 26 69-94 80-105 (108)
49 1hdj_A Human HSP40, HDJ-1; mol 24.4 1.2E+02 0.004 18.0 4.8 38 50-87 22-62 (77)
50 2dn9_A DNAJ homolog subfamily 23.5 73 0.0025 19.0 3.1 37 50-86 26-66 (79)
51 2ctw_A DNAJ homolog subfamily 22.4 1E+02 0.0034 19.9 3.7 51 40-90 15-80 (109)
52 1ayz_A UBC2, ubiquitin-conjuga 21.9 21 0.00071 25.4 0.2 15 85-99 134-148 (169)
53 2lkw_A Membrane fusion protein 21.7 19 0.00065 17.4 -0.0 11 36-46 9-19 (26)
54 3itf_A Periplasmic adaptor pro 20.7 1.1E+02 0.0039 21.1 3.9 30 69-98 108-137 (145)
55 2cug_A Mkiaa0962 protein; DNAJ 20.5 1.3E+02 0.0043 18.5 3.8 46 40-85 15-74 (88)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=7.9e-27 Score=160.75 Aligned_cols=90 Identities=28% Similarity=0.493 Sum_probs=83.6
Q ss_pred CccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHH
Q 032166 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (146)
Q Consensus 25 ~kk~~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~ 104 (146)
..+++++.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|..++++|..+|.
T Consensus 5 ~~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 83 (102)
T 2co9_A 5 SSGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPN-ATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLA 83 (102)
T ss_dssp CCCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677899999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HhHHhcCCCCC
Q 032166 105 NYNRRQAEGTK 115 (146)
Q Consensus 105 ~y~~k~~~~~~ 115 (146)
.|+.++.....
T Consensus 84 ~Y~~~~~~~~~ 94 (102)
T 2co9_A 84 AYRASLVSKSY 94 (102)
T ss_dssp HHHHHHTSSCC
T ss_pred HHHhhcccccc
Confidence 99999876554
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=9.5e-26 Score=150.72 Aligned_cols=79 Identities=39% Similarity=0.671 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHH
Q 032166 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (146)
Q Consensus 28 ~~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~ 105 (146)
+++.++||++||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|++|++++|++|.++|..++++|..+|..
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPE-VPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTT-SCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999 65 7999999999999999999999999999999999999999
Q ss_pred hH
Q 032166 106 YN 107 (146)
Q Consensus 106 y~ 107 (146)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 94
No 3
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.93 E-value=2.7e-26 Score=157.35 Aligned_cols=84 Identities=29% Similarity=0.534 Sum_probs=80.2
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHH
Q 032166 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (146)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~ 108 (146)
+++.+||++||||+|||||||+++|..|+.+||+ +++++|+++||++|++||+++|++|.++|..++++|..+|..|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPE-MSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTT-SCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hcCCC
Q 032166 109 RQAEG 113 (146)
Q Consensus 109 k~~~~ 113 (146)
.++.-
T Consensus 81 ~~P~~ 85 (99)
T 1k99_A 81 DHPDL 85 (99)
T ss_dssp CCCCC
T ss_pred HCCCc
Confidence 87753
No 4
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.92 E-value=1.1e-25 Score=147.19 Aligned_cols=76 Identities=49% Similarity=0.819 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHH
Q 032166 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (146)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~ 108 (146)
++||++|+||+|||||||+++|..|+..||+ +++.+|+++||.+|+.||+++|++|.++|..++.+|..+|..|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999 999999999999999999999999999999999999999999975
No 5
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.92 E-value=3.3e-26 Score=155.14 Aligned_cols=83 Identities=39% Similarity=0.687 Sum_probs=78.7
Q ss_pred cCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHh
Q 032166 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (146)
Q Consensus 27 k~~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 106 (146)
+++++.+||+.|+||+|||||||+++|..|+.+||+ +++.+|+++||++|++||+++|++|.++|..++++|..+|..|
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPD-ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTT-SCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 032166 107 NRRQ 110 (146)
Q Consensus 107 ~~k~ 110 (146)
..+.
T Consensus 89 ~~~~ 92 (93)
T 1cg7_A 89 NATL 92 (93)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 9764
No 6
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.92 E-value=3e-25 Score=148.65 Aligned_cols=77 Identities=29% Similarity=0.486 Sum_probs=74.2
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhH
Q 032166 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (146)
Q Consensus 30 k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 107 (146)
+..+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|..++++|..++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 466899999999999999999999999999999 99999999999999999999999999999999999999999885
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.92 E-value=7.6e-25 Score=148.08 Aligned_cols=78 Identities=29% Similarity=0.591 Sum_probs=75.4
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhc
Q 032166 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (146)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~ 110 (146)
.+||++||||+|||||||+++|..|+..||+ +++.+|+++||++|++||+++|++|.++|..++++|..+|..|+.+.
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~ 79 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSE 79 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 4799999999999999999999999999999 99999999999999999999999999999999999999999999754
No 8
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.92 E-value=4.4e-26 Score=155.56 Aligned_cols=83 Identities=36% Similarity=0.711 Sum_probs=78.3
Q ss_pred cCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHH
Q 032166 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (146)
Q Consensus 27 k~~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~ 104 (146)
+++++.+||++|+||+|||||||+++|..|+.+||+ ++ +.+|+++||++|++||+++|++|.++|..++.+|..+|.
T Consensus 12 ~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 90 (97)
T 2lhj_A 12 RPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPE-IAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKA 90 (97)
T ss_dssp CTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTT-STTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999 88 999999999999999999999999999999999999999
Q ss_pred HhHHhc
Q 032166 105 NYNRRQ 110 (146)
Q Consensus 105 ~y~~k~ 110 (146)
.|+.+.
T Consensus 91 ~y~~~~ 96 (97)
T 2lhj_A 91 EYAQRK 96 (97)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999763
No 9
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.92 E-value=7.5e-26 Score=152.54 Aligned_cols=80 Identities=30% Similarity=0.470 Sum_probs=73.9
Q ss_pred CccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHH
Q 032166 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (146)
Q Consensus 25 ~kk~~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~ 104 (146)
+++++++.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|..++++|..+|.
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677899999999999999999999999999999 99999999999999999999999999999999999987765
Q ss_pred H
Q 032166 105 N 105 (146)
Q Consensus 105 ~ 105 (146)
.
T Consensus 87 ~ 87 (90)
T 1wgf_A 87 P 87 (90)
T ss_dssp S
T ss_pred H
Confidence 4
No 10
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=7.9e-25 Score=148.00 Aligned_cols=80 Identities=29% Similarity=0.444 Sum_probs=76.7
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhcC
Q 032166 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (146)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~~ 111 (146)
..+|++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|..++++|..+|..|..++.
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPK-TSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3689999999999999999999999999999 999999999999999999999999999999999999999999998875
Q ss_pred C
Q 032166 112 E 112 (146)
Q Consensus 112 ~ 112 (146)
.
T Consensus 81 ~ 81 (92)
T 2cs1_A 81 Q 81 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.91 E-value=2.4e-24 Score=139.71 Aligned_cols=72 Identities=38% Similarity=0.733 Sum_probs=69.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHh
Q 032166 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (146)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k 109 (146)
+++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++ |++|.++|..++++|..+|++|+.+
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPG-IKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999 9999999999999999998 9999999999999999999999875
No 12
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.91 E-value=4e-25 Score=146.59 Aligned_cols=78 Identities=35% Similarity=0.618 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHh
Q 032166 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (146)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k 109 (146)
++||++||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|++||+++|++|.++|..++++|..+|..|...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTT-TCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999999999 65 59999999999999999999999999999999999999999865
Q ss_pred c
Q 032166 110 Q 110 (146)
Q Consensus 110 ~ 110 (146)
.
T Consensus 81 ~ 81 (83)
T 1aab_A 81 K 81 (83)
T ss_dssp S
T ss_pred C
Confidence 3
No 13
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.91 E-value=1.3e-24 Score=141.72 Aligned_cols=74 Identities=27% Similarity=0.505 Sum_probs=70.2
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHH
Q 032166 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (146)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~ 108 (146)
||++||||+|||||||+++|..|+.+||+ +++++|+++||++|++||+++|++|.++|..++++|..+|..|+.
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 74 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSC-CSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 68999999999999999999999999999 999999999999999999999999999999999999999999864
No 14
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.90 E-value=4.3e-24 Score=138.50 Aligned_cols=72 Identities=35% Similarity=0.714 Sum_probs=69.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHh
Q 032166 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (146)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k 109 (146)
|++||||+|||||||+++|..|+..||+ +++++|+++||++|++| ++|++|.++|..++++|..+|..|+.+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPG-IKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7899999999999999999999999999 99999999999999999 899999999999999999999999864
No 15
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.90 E-value=1.1e-23 Score=135.56 Aligned_cols=69 Identities=36% Similarity=0.667 Sum_probs=66.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHh
Q 032166 37 KPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (146)
Q Consensus 37 ~PKrP~say~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 106 (146)
+||||+|||||||+++|..|+..||+ ++ +++|+++||++|++||+++|++|.++|..++++|..+|..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTT-CCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999 64 69999999999999999999999999999999999999887
No 16
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.90 E-value=1.5e-23 Score=139.67 Aligned_cols=76 Identities=28% Similarity=0.511 Sum_probs=73.0
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhc
Q 032166 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (146)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~ 110 (146)
.|+.|+||+|||||||+++|..|+..||+ +++.+|+++||++|++||+++|++|.++|..++++|..+|.+|+...
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 76 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 37899999999999999999999999999 99999999999999999999999999999999999999999998654
No 17
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.89 E-value=2.9e-23 Score=152.57 Aligned_cols=79 Identities=48% Similarity=0.795 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHH
Q 032166 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (146)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~ 108 (146)
+++.+||++||||+|||||||+++|..|+.+||+ +++++|+++||++|++||+++|++|.++|..++++|..+|.+|+.
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999999999 999999999999999999999999999999999999999999985
No 18
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.89 E-value=4.4e-24 Score=141.26 Aligned_cols=77 Identities=21% Similarity=0.412 Sum_probs=73.8
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhc
Q 032166 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (146)
Q Consensus 33 ~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~ 110 (146)
.++++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++||+++|++|.++|..++++|..+|..|+.+.
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p 79 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPR-LDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGP 79 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSS-SCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 578999999999999999999999999999 99999999999999999999999999999999999999999997653
No 19
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.89 E-value=9.1e-24 Score=135.74 Aligned_cols=71 Identities=31% Similarity=0.597 Sum_probs=63.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhH
Q 032166 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (146)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 107 (146)
+.||||+|||||||+++|..|+..||+ +++.+|+++||++|+.||+++|++|.++|..++.+|..+|+.|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 579999999999999999999999999 99999999999999999999999999999999999999999885
No 20
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=5.1e-23 Score=143.14 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=75.1
Q ss_pred cCCCCCCCCCCC-CCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHH
Q 032166 27 KSGKAAKDPNKP-KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (146)
Q Consensus 27 k~~k~~~dp~~P-KrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~ 105 (146)
.+.++.+||++| |||+|||||||+++|..|+ + +++.+|+++||++|+.|++++|++|.++|..++.+|..+|..
T Consensus 6 ~~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~-~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~ 80 (108)
T 1v64_A 6 SGQLKDKFDGRPTKPPPNSYSLYCAELMANMK----D-VPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLR 80 (108)
T ss_dssp SCCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----T-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHh----C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667899999 9999999999999999886 5 899999999999999999999999999999999999999999
Q ss_pred hHHhcCC
Q 032166 106 YNRRQAE 112 (146)
Q Consensus 106 y~~k~~~ 112 (146)
|..++..
T Consensus 81 Y~~~~~~ 87 (108)
T 1v64_A 81 FLESLPE 87 (108)
T ss_dssp HHHHSCH
T ss_pred HHhhCCH
Confidence 9998863
No 21
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.89 E-value=3.2e-23 Score=136.39 Aligned_cols=74 Identities=28% Similarity=0.565 Sum_probs=71.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhc
Q 032166 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (146)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~ 110 (146)
+.|+||+|||||||+++|..|+..||+ +++.+|+++||.+|+.||+++|++|.++|..++++|..+|+.|+...
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPK-MHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 74 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 479999999999999999999999999 99999999999999999999999999999999999999999998653
No 22
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.89 E-value=2.8e-23 Score=137.51 Aligned_cols=75 Identities=31% Similarity=0.572 Sum_probs=69.2
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHh
Q 032166 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (146)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k 109 (146)
.++.||||+|||||||+++|..|+..||+ +++++|+++||++|+.|++++|++|.++|..++++|..+|++|+-+
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 77 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYR 77 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 46789999999999999999999999999 9999999999999999999999999999999999999999999754
No 23
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.89 E-value=3.7e-23 Score=143.31 Aligned_cols=80 Identities=29% Similarity=0.555 Sum_probs=70.8
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHh
Q 032166 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (146)
Q Consensus 30 k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k 109 (146)
...++++.||||+|||||||+++|..|+..||+ +++.+|+++||++|+.|++++|++|.++|..++++|..+|+.|+..
T Consensus 22 ~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 22 QSSKNKPHVKRPMNAFMVWAQAARRKLADQYPH-LHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp ------CCCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 345789999999999999999999999999999 9999999999999999999999999999999999999999999864
Q ss_pred c
Q 032166 110 Q 110 (146)
Q Consensus 110 ~ 110 (146)
.
T Consensus 101 P 101 (106)
T 4euw_A 101 P 101 (106)
T ss_dssp -
T ss_pred C
Confidence 3
No 24
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=5.9e-23 Score=137.00 Aligned_cols=75 Identities=24% Similarity=0.429 Sum_probs=71.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhcC
Q 032166 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (146)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~~ 111 (146)
+.|+||+|||||||+++|..|+.+||+ +++++|+++||++|++||+++|++|.++|..++++|..+|+.|.....
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~ 75 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDN 75 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCC
Confidence 479999999999999999999999999 999999999999999999999999999999999999999999986544
No 25
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=5.2e-23 Score=134.92 Aligned_cols=73 Identities=29% Similarity=0.559 Sum_probs=70.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHh
Q 032166 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (146)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k 109 (146)
|.||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++++|..++++|+-.
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~ 73 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPD-MHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYR 73 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 579999999999999999999999999 9999999999999999999999999999999999999999999854
No 26
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=150.40 Aligned_cols=80 Identities=48% Similarity=0.796 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHH
Q 032166 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (146)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~ 108 (146)
+++.+||++|+||+|||||||+++|..|+.+||+ +++.+|+++||.+|++||+++|++|.++|..++++|..+|..|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556799999999999999999999999999999 999999999999999999999999999999999999999999986
Q ss_pred h
Q 032166 109 R 109 (146)
Q Consensus 109 k 109 (146)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 4
No 27
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=6.4e-23 Score=135.33 Aligned_cols=74 Identities=23% Similarity=0.473 Sum_probs=68.8
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHh
Q 032166 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (146)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k 109 (146)
++.|+||+|||||||+++|..|+..||+ +++.+|+++||.+|++||+++|++|.++|..++.+|..++++|+-.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~ 75 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSS-CCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeec
Confidence 4789999999999999999999999999 9999999999999999999999999999999999999999999864
No 28
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.88 E-value=2.1e-22 Score=135.83 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=72.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhcCC
Q 032166 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112 (146)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~~~ 112 (146)
++|+||+|||+||++++|..++..||+ ++++|++.||++|++|++.+|++|+++|..++.+|..+|..|+.+...
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 689999999999999999999999998 789999999999999999999999999999999999999999987664
No 29
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=129.75 Aligned_cols=66 Identities=35% Similarity=0.633 Sum_probs=62.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHh
Q 032166 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (146)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 106 (146)
|+||||+|||+|||+++|..++..|| ++|+++||++|++||+++|++|.++|..++.+|..+|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999976655 5999999999999999999999999999999999999998
No 30
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=9.9e-22 Score=146.32 Aligned_cols=84 Identities=33% Similarity=0.604 Sum_probs=77.8
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHh
Q 032166 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (146)
Q Consensus 28 ~~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~-~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 106 (146)
.++.++||++||||+|||||||+++|..|+..||+. +++.+|+++||++|+.||+++|++|.++|..++.+|..+|..|
T Consensus 6 ~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 85 (173)
T 2yrq_A 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 85 (173)
T ss_dssp CSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 335668999999999999999999999999999994 4899999999999999999999999999999999999999999
Q ss_pred HHhcC
Q 032166 107 NRRQA 111 (146)
Q Consensus 107 ~~k~~ 111 (146)
.....
T Consensus 86 ~~~~~ 90 (173)
T 2yrq_A 86 IPPKG 90 (173)
T ss_dssp CCCCC
T ss_pred hhhhh
Confidence 87544
No 31
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=1.4e-21 Score=134.30 Aligned_cols=80 Identities=15% Similarity=0.300 Sum_probs=71.0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhcCC
Q 032166 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112 (146)
Q Consensus 33 ~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~~~ 112 (146)
....+||||+|||||||++++. ...+++ +++.+|+++||++|+.|++++|++|.++|..++++|..+|..|..++..
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~-~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~ 80 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNH-LPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSP 80 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 4567999999999999999964 234555 7899999999999999999999999999999999999999999999876
Q ss_pred CCC
Q 032166 113 GTK 115 (146)
Q Consensus 113 ~~~ 115 (146)
...
T Consensus 81 ~~~ 83 (101)
T 1v63_A 81 QDR 83 (101)
T ss_dssp THH
T ss_pred HHH
Confidence 543
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=129.29 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=59.1
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCChHhhHhHHHHHHHH
Q 032166 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (146)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~-~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~ 95 (146)
++++||||+|||||||+++|..|+.+||+ ++ +++|+++||++|++|++++|++|.++|..+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~-~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPD-FSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTT-CCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999 87 999999999999999999999999999876
No 33
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.83 E-value=5.9e-21 Score=149.06 Aligned_cols=80 Identities=15% Similarity=0.377 Sum_probs=76.9
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhc
Q 032166 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (146)
Q Consensus 31 ~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~ 110 (146)
...+|++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|.+|.++|..++++|..+|..|...+
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 113 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999999999999 99999999999999999999999999999999999999999999877
Q ss_pred C
Q 032166 111 A 111 (146)
Q Consensus 111 ~ 111 (146)
+
T Consensus 114 ~ 114 (238)
T 3tmm_A 114 T 114 (238)
T ss_dssp C
T ss_pred C
Confidence 5
No 34
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=144.29 Aligned_cols=77 Identities=16% Similarity=0.390 Sum_probs=74.4
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHhcC
Q 032166 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (146)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k~~ 111 (146)
.|++||||+|||||||+++|..|+.+||+ +++++|+++||++|+.||+++|.+|.++|..++++|..+|..|...++
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~t 82 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLT 82 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 47899999999999999999999999999 999999999999999999999999999999999999999999998775
No 35
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.81 E-value=9.1e-22 Score=132.60 Aligned_cols=68 Identities=21% Similarity=0.350 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHH
Q 032166 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102 (146)
Q Consensus 30 k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e 102 (146)
+..+||++||||+|||||||+++|..|+.+||+ ++ +++|+ ++|+.|++++|++|+++|..+++.|...
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~-~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPD-WTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCS-HHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcC-ccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 445699999999999999999999999999999 88 88887 9999999999999999999999998753
No 36
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-20 Score=127.79 Aligned_cols=70 Identities=21% Similarity=0.339 Sum_probs=65.3
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHhcCCChHhhHhHHHHHHHHHHHHHHHHH
Q 032166 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAG---GEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (146)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l---~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~ 104 (146)
..++++||||+|||||||+++|..|+.+ + +++.+|+++| |++|++|++++|++|+++|..+++.|..++.
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~-~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--G-LPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--T-CCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--C-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 4678899999999999999999999988 5 8889999999 9999999999999999999999999998763
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.80 E-value=2.5e-21 Score=149.01 Aligned_cols=81 Identities=31% Similarity=0.495 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHH
Q 032166 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (146)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~ 108 (146)
++..+||++||||+|||||||+++|..|+..|| .+|+++||++|++|++++|++|..+|..++++|..+|.+|+.
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999998865544 599999999999999999999999999999999999999999
Q ss_pred hcCCCC
Q 032166 109 RQAEGT 114 (146)
Q Consensus 109 k~~~~~ 114 (146)
+++...
T Consensus 181 ~~~~~~ 186 (214)
T 3tq6_A 181 QMIEVG 186 (214)
T ss_dssp HHHHTT
T ss_pred hCcccc
Confidence 985433
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.79 E-value=4.2e-21 Score=149.86 Aligned_cols=81 Identities=31% Similarity=0.495 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHH
Q 032166 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (146)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~ 108 (146)
++..+||++||||+|||||||+++|..|+..|| .+|+++||++|++|++++|++|.++|..++++|..+|.+|+.
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH-----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999998875554 499999999999999999999999999999999999999999
Q ss_pred hcCCCC
Q 032166 109 RQAEGT 114 (146)
Q Consensus 109 k~~~~~ 114 (146)
++....
T Consensus 213 k~~~~~ 218 (238)
T 3tmm_A 213 QMIEVG 218 (238)
T ss_dssp HHHHTT
T ss_pred hCcccc
Confidence 985443
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.75 E-value=2.1e-18 Score=126.52 Aligned_cols=74 Identities=28% Similarity=0.539 Sum_probs=71.3
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHhHHh
Q 032166 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (146)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~~k 109 (146)
|+.|+||+||||||+++.|..|...||+ +++.+|+++||.+|++||+++|++|.++|..++.+|..+|..|...
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 75 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccc
Confidence 6789999999999999999999999999 9999999999999999999999999999999999999999999754
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=73.56 E-value=2.9 Score=31.13 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=37.7
Q ss_pred CCHHHHHHH-HHHHhcCCChHhhHhHHHHHHHH-HHHHHHHHHHhHHhc
Q 032166 64 KSVAAVGKA-GGEKWKSMSEADKAPYVAKAEKR-KVEYEKDMKNYNRRQ 110 (146)
Q Consensus 64 ~~~~ei~k~-l~~~Wk~ls~~eK~~y~~~A~~~-k~~Y~~e~~~y~~k~ 110 (146)
..+..+++. ||..|+.+|+++++.|.+..... ...|-..+..|....
T Consensus 72 ~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q~ 120 (211)
T 2qgu_A 72 ADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQT 120 (211)
T ss_dssp BCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred cCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 456666654 68999999999999999988874 567888999998543
No 41
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.05 E-value=73 Score=20.15 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHhcCCChHhhHh
Q 032166 50 EEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAP 87 (146)
Q Consensus 50 ~e~r~~~~~~~p~~~~----~~ei~k~l~~~Wk~ls~~eK~~ 87 (146)
+.+|..++.-||+... ..+..+.|.+.|..|++..+..
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 77 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4455666778998321 3678889999999999776543
No 42
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=36.23 E-value=93 Score=20.60 Aligned_cols=53 Identities=11% Similarity=0.241 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHH
Q 032166 47 VFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102 (146)
Q Consensus 47 lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e 102 (146)
.|+.+++.-+. .++ ++..++..+|-+.|..+..-+=..|.-.+...+..|...
T Consensus 28 kiLaER~kpL~--id~-l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~ 80 (106)
T 1j1d_B 28 KILAERRKVLA--IDH-LNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEIN 80 (106)
T ss_dssp HHHHHHHHHHH--HTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCC--CCC-CCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHH
Confidence 45566665552 344 788999999999999888777777988888888877644
No 43
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=32.73 E-value=46 Score=22.80 Aligned_cols=18 Identities=17% Similarity=0.512 Sum_probs=11.7
Q ss_pred CcHHHHHHHHHHHHHHHhCCC
Q 032166 42 ASAFFVFMEEFREQYKKDHPK 62 (146)
Q Consensus 42 ~say~lF~~e~r~~~~~~~p~ 62 (146)
...|.+|+-.. |++-||+
T Consensus 32 ~esy~~YIyKV---LKQVhpd 49 (123)
T 2nqb_D 32 KESYAIYIYTV---LKQVHPD 49 (123)
T ss_dssp CCCSHHHHHHH---HHHHCTT
T ss_pred cchHHHHHHHH---HHHhCCC
Confidence 34577777555 5556888
No 44
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=27.89 E-value=84 Score=19.56 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCChHhhHhH
Q 032166 50 EEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPY 88 (146)
Q Consensus 50 ~e~r~~~~~~~p~~~-~~~ei~k~l~~~Wk~ls~~eK~~y 88 (146)
+..|..++.-||+.. ...+..+.|.+.|..|++..+..-
T Consensus 27 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~ 66 (92)
T 2o37_A 27 KGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREI 66 (92)
T ss_dssp HHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHH
Confidence 445566677899832 245788899999999987665443
No 45
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=27.39 E-value=58 Score=22.40 Aligned_cols=19 Identities=16% Similarity=0.468 Sum_probs=12.1
Q ss_pred CCcHHHHHHHHHHHHHHHhCCC
Q 032166 41 PASAFFVFMEEFREQYKKDHPK 62 (146)
Q Consensus 41 P~say~lF~~e~r~~~~~~~p~ 62 (146)
....|-+|+-.. |++-||+
T Consensus 34 ~~esy~~YIyKV---LKQVhpd 52 (126)
T 1tzy_B 34 RKESYSIYVYKV---LKQVHPD 52 (126)
T ss_dssp CCCCCHHHHHHH---HHHHCTT
T ss_pred ccccHHHHHHHH---HHHhCCC
Confidence 345577777555 5556888
No 46
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=26.34 E-value=8 Score=19.25 Aligned_cols=11 Identities=18% Similarity=0.600 Sum_probs=7.5
Q ss_pred CCCCCcHHHHH
Q 032166 38 PKRPASAFFVF 48 (146)
Q Consensus 38 PKrP~say~lF 48 (146)
..||+|+|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 35788887655
No 47
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=24.84 E-value=81 Score=18.57 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCChHhhH
Q 032166 50 EEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKA 86 (146)
Q Consensus 50 ~e~r~~~~~~~p~~~~-~~ei~k~l~~~Wk~ls~~eK~ 86 (146)
+..|...+.-||+... ..+....|...|..|++..+.
T Consensus 27 ~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R 64 (73)
T 2och_A 27 KAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKR 64 (73)
T ss_dssp HHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHH
Confidence 3445556677888221 247788899999998866554
No 48
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=24.66 E-value=93 Score=20.52 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCChHhhHhHHHHHHH
Q 032166 69 VGKAGGEKWKSMSEADKAPYVAKAEK 94 (146)
Q Consensus 69 i~k~l~~~Wk~ls~~eK~~y~~~A~~ 94 (146)
.++.-..++.-|++++|..|....++
T Consensus 80 ~~r~~~qmy~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 80 HMETQNKIYNILTPEQKKQFNANFEK 105 (108)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45556789999999999999886653
No 49
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=24.43 E-value=1.2e+02 Score=17.99 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCCC---CHHHHHHHHHHHhcCCChHhhHh
Q 032166 50 EEFREQYKKDHPKNK---SVAAVGKAGGEKWKSMSEADKAP 87 (146)
Q Consensus 50 ~e~r~~~~~~~p~~~---~~~ei~k~l~~~Wk~ls~~eK~~ 87 (146)
+..|..++.-||+.. ...+....|.+.|..|++..+..
T Consensus 22 ~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 62 (77)
T 1hdj_A 22 RAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62 (77)
T ss_dssp HHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence 344555666788832 24678889999999998766543
No 50
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.52 E-value=73 Score=19.03 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCCC----CHHHHHHHHHHHhcCCChHhhH
Q 032166 50 EEFREQYKKDHPKNK----SVAAVGKAGGEKWKSMSEADKA 86 (146)
Q Consensus 50 ~e~r~~~~~~~p~~~----~~~ei~k~l~~~Wk~ls~~eK~ 86 (146)
+..|..++.-||+.. ...+....|.+.|..|++..+.
T Consensus 26 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 66 (79)
T 2dn9_A 26 KAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKR 66 (79)
T ss_dssp HHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 444555667788722 1256778888888888765543
No 51
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.38 E-value=1e+02 Score=19.92 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=33.2
Q ss_pred CCCcHHHHH-----------HHHHHHHHHHhCCCCCC----HHHHHHHHHHHhcCCChHhhHhHHH
Q 032166 40 RPASAFFVF-----------MEEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVA 90 (146)
Q Consensus 40 rP~say~lF-----------~~e~r~~~~~~~p~~~~----~~ei~k~l~~~Wk~ls~~eK~~y~~ 90 (146)
...++|-++ .+..|...+.-||+... ..+....|.+.|..|++..+....+
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD 80 (109)
T 2ctw_A 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYD 80 (109)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 345677665 24455666778998322 2567889999999998766554333
No 52
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=21.86 E-value=21 Score=25.44 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=6.7
Q ss_pred hHhHHHHHHHHHHHH
Q 032166 85 KAPYVAKAEKRKVEY 99 (146)
Q Consensus 85 K~~y~~~A~~~k~~Y 99 (146)
+..|...|+.-..+|
T Consensus 134 ~~~y~~~~r~~~~~~ 148 (169)
T 1ayz_A 134 KSQYVKRVKETVEKS 148 (169)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555544443333
No 53
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=21.73 E-value=19 Score=17.43 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=8.1
Q ss_pred CCCCCCCcHHH
Q 032166 36 NKPKRPASAFF 46 (146)
Q Consensus 36 ~~PKrP~say~ 46 (146)
.+|-.|++||+
T Consensus 9 qppapppnafv 19 (26)
T 2lkw_A 9 QPPAPPPNAFV 19 (26)
T ss_pred cCCCcCCCeeE
Confidence 46777888875
No 54
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=20.71 E-value=1.1e+02 Score=21.15 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCChHhhHhHHHHHHHHHHH
Q 032166 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98 (146)
Q Consensus 69 i~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~ 98 (146)
.++.-.+++.-|++++|..|.+...+-...
T Consensus 108 r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~ 137 (145)
T 3itf_A 108 MAKVRNQMYRLLTPEQQAVLNEKHQQRMEQ 137 (145)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 345556889999999999998876655443
No 55
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=20.52 E-value=1.3e+02 Score=18.46 Aligned_cols=46 Identities=11% Similarity=0.168 Sum_probs=30.2
Q ss_pred CCCcHHHHHH-----------HHHHHHHHHhCCCCC---CHHHHHHHHHHHhcCCChHhh
Q 032166 40 RPASAFFVFM-----------EEFREQYKKDHPKNK---SVAAVGKAGGEKWKSMSEADK 85 (146)
Q Consensus 40 rP~say~lF~-----------~e~r~~~~~~~p~~~---~~~ei~k~l~~~Wk~ls~~eK 85 (146)
...++|-++. +.+|..++.-||+.. ...+....|.+.|..|++..+
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 74 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEK 74 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHH
Confidence 4567777662 444555666788832 256778888888888876554
Done!