BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032167
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 32 MDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVTGHVDPNKVLKKVRSTGKRAEFW 88
M C+ C V A+ + G + VEV+ ++ V G DP +++ V G +AE
Sbjct: 9 MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEVL 65
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 25 TVEIKVKMDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVTGHVDPNKVLKKVRSTGKR 84
T+E V+M C C VR ++ + G + VEV+ + V V + +V + TG++
Sbjct: 20 TLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQ 79
Query: 85 A 85
A
Sbjct: 80 A 80
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 33.5 bits (75), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 24 QTVEIKVK-MDCDGCERRVRHAVSSMKGAKSVEVN--RKQSRVTVTGHVDPNKVLKKVRS 80
QT+ ++++ MDC C + A++ + G +S +VN +Q+ V+ G P + V
Sbjct: 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61
Query: 81 TGKRA 85
G A
Sbjct: 62 AGYHA 66
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 32.3 bits (72), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 19 RRKPWQTVEIKVK-MDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVTGHVDPNKV 74
+ P +T +++V MDC C+ ++ ++ +KG V R+TVT DP +V
Sbjct: 3 QSSPLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT--YDPKQV 57
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 32.3 bits (72), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 22 PWQTVEIKVK-MDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVTGHVDPNKV 74
P +T +++V MDC C+ ++ ++ +KG V R+TVT DP +V
Sbjct: 1 PLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT--YDPKQV 52
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 30 VKMDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVTGHVDPNKVLKKVRSTGKRA 85
+ M C+ C ++ + ++ G S+ + +Q ++V V P+ ++ +R+ GK A
Sbjct: 13 IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDA 68
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 25 TVEIKV-KMDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVTGHVDPNKVLKKVRSTGK 83
T+++ V MDC C V AV + +V+V+ +VT+T + ++ + S G
Sbjct: 1 TIQLTVPTMDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGH 60
Query: 84 RAE 86
E
Sbjct: 61 EVE 63
>pdb|2CG9|X Chain X, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|Y Chain Y, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 134
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 33 DCDGCERRVRHAVSSMKGAK-----SVEVNRKQSRVTVTGHVDPNKVLKKVRSTGKR--- 84
DCD E ++ + +K V+ Q + + + P K + KV + G+
Sbjct: 33 DCDAPELTIKPSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMHKV-ANGQHYFL 91
Query: 85 --------AEFWPYVPYNLVAYPYVAQAYDK 107
+E+WP + V YPY+ +DK
Sbjct: 92 KLYKKDLESEYWPRLTKEKVKYPYIKTDFDK 122
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 22 PWQTVEIKVK-MDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVTGHVDPNKV 74
P +T +++V M C C + A+ +KG V R+TVT DP +V
Sbjct: 1 PLKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVT--YDPKQV 52
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 24 QTVEIKVK-MDCDGCERRVRHAVSSMKGAKSVEVN--RKQSRVTVTGHVDPNKVLKKVRS 80
QT+ ++++ M C C + A++ + G +S +VN +Q+ V+ G P + V
Sbjct: 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 62
Query: 81 TGKRA 85
G A
Sbjct: 63 AGYHA 67
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 24 QTVEIKVK-MDCDGCERRVRHAVSSMKGAKSVEVN--RKQSRVTVTGHVDPNKVLKKVRS 80
QT+ ++++ M C C + A++ + G +S +VN +Q+ V+ G P + V
Sbjct: 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 62
Query: 81 TGKRA 85
G A
Sbjct: 63 AGYHA 67
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Zn(Ii)-Form
Length = 73
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 32 MDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVTGHVDPNKVLKKVRSTGKRAEF 87
MDC C R+V +AV + G V+V ++ V N + +V S ++A +
Sbjct: 12 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDA---DNDIRAQVESALQKAGY 64
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 25 TVEIKV-KMDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVTGHVDPNKVLKKVRSTGK 83
T+++ V + C+ C V AV + +V+V+ +VT+T + ++ + S G
Sbjct: 2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGY 61
Query: 84 RAE 86
E
Sbjct: 62 EVE 64
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 25 TVEIKV-KMDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVTGHVDPNKVLKKVRSTGK 83
T+++ V + C+ C V AV + +V+V+ +VT+T + ++ + S G
Sbjct: 2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGH 61
Query: 84 RAE 86
E
Sbjct: 62 EVE 64
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 25 TVEIKV-KMDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVTGHVDPNKVLKKVRSTGK 83
T+++ V + C+ C V AV + +V+V+ +VT+T + ++ + S G
Sbjct: 1 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGH 60
Query: 84 RAE 86
E
Sbjct: 61 EVE 63
>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 68
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 27 EIKVKMDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVTGHVDPNKVLKKVRSTGKRAE 86
E V M C GC V ++ + G K +++ +V + + +L ++ TGK
Sbjct: 4 EFSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGKTVS 62
Query: 87 FW 88
+
Sbjct: 63 YL 64
>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
pdb|1TL5|A Chain A, Solution Structure Of Apohah1
pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Monomer)
pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
Length = 68
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 27 EIKVKMDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVTGHVDPNKVLKKVRSTGKRAE 86
E V M C GC V ++ + G K +++ +V + + +L ++ TGK
Sbjct: 5 EFSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGKTVS 63
Query: 87 FW 88
+
Sbjct: 64 YL 65
>pdb|2V25|A Chain A, Structure Of The Campylobacter Jejuni Antigen Peb1a, An
Aspartate And Glutamate Receptor With Bound Aspartate
pdb|2V25|B Chain B, Structure Of The Campylobacter Jejuni Antigen Peb1a, An
Aspartate And Glutamate Receptor With Bound Aspartate
Length = 259
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 16/127 (12%)
Query: 2 GVLDHLFDLFEITPRRKR----RKPWQTVEIKVKMDCDGCERRVRHAVSSMKGAKSVEVN 57
G +D + F ITP RKR +P+ I + + + + +++ MKGA ++ V
Sbjct: 100 GSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLV----LKEKKYKSLADMKGA-NIGVA 154
Query: 58 RKQSRVTVTGHVDPNKVLKKVRSTGKRAEF--WPYVPYNLVAYPYVAQAYDKKAPSGYVR 115
+ + G KK+ K +EF +P + L A A + DK GYV
Sbjct: 155 QAATTKKAIGE-----AAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVD 209
Query: 116 NVAQALP 122
+ ++ LP
Sbjct: 210 DKSEILP 216
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain
I In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain
I In Complex With Adp
Length = 242
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 47 SMKGAKSVEVNRKQSRVTVTGHVDPNKVL 75
SM+ A+ VE R+ +TV GH P VL
Sbjct: 1 SMRTAQEVETYRRSKEITVRGHNCPKPVL 29
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 32 MDCDGCERRVRHAVSSMKGAKSVEVN--RKQSRVTVTGHVDPNKVLKKVRSTGKRAEF 87
M CD C V+ A+ + G +S V+ + +++ + P+ + V G +A
Sbjct: 9 MTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKATL 66
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 32 MDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVTGHVDPNKV 74
+ C C + V ++G VN S++TVTG +V
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASIQQV 54
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 24 QTVEIKV-KMDCDGCERRVRHAVSSMKGAKSVEVNRKQSRVTVT 66
QTV + V M C C V+ A+S ++G V+V + + VT
Sbjct: 3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVT 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,138,245
Number of Sequences: 62578
Number of extensions: 140801
Number of successful extensions: 331
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 25
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)