BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032168
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KQN|A Chain A, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|B Chain B, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|C Chain C, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|D Chain D, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|E Chain E, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|F Chain F, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQO|A Chain A, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|B Chain B, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|C Chain C, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|D Chain D, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|E Chain E, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|F Chain F, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KR2|A Chain A, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|B Chain B, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|C Chain C, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|D Chain D, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|E Chain E, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|F Chain F, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
Length = 279
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 75/115 (65%), Gaps = 6/115 (5%)
Query: 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEH 77
KT VVL+A GSFNP T MHLR+FELA+D +N G Y V+ G +SPV DAYKK+GLI A H
Sbjct: 6 KTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYH 65
Query: 78 RINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQ 132
R+ + LA K+S ++ VD WE+ Q ++ TL VL + L ++ DH Q
Sbjct: 66 RVIMAELATKNSKWVEVDTWESLQKEWKETLKVLRH-----HQEKLEASDCDHQQ 115
>pdb|1NUP|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complex With Nmn
pdb|1NUP|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complex With Nmn
pdb|1NUQ|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Naad
pdb|1NUQ|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Naad
pdb|1NUR|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE
pdb|1NUR|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE
pdb|1NUS|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Atp Analog And Nmn
pdb|1NUS|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Atp Analog And Nmn
pdb|1NUT|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Atp Analog
pdb|1NUT|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Atp Analog
pdb|1NUU|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Nad
pdb|1NUU|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Nad
Length = 252
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Query: 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEHRIN 80
VVL+A GSFNP T MHLRMFE+ARD L+ G Y VI G +SPVND Y K+ L ++ HR+
Sbjct: 7 VVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVA 66
Query: 81 LCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130
+ LA ++SD+I VDPWE+ Q+ + T+ VL + L+ + G DH
Sbjct: 67 MARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDH 116
>pdb|1KKU|A Chain A, Crystal Structure Of Nuclear Human Nicotinamide
Mononucleotide Adenylyltransferase
Length = 279
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 75/115 (65%), Gaps = 6/115 (5%)
Query: 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEH 77
KT VVL+A GSFNP T MHLR+FELA+D +N G Y V+ G +SPV DAYKK+GLI A H
Sbjct: 6 KTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYH 65
Query: 78 RINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQ 132
R+ + LA K+S ++ VD WE+ Q ++ TL VL + L ++ DH Q
Sbjct: 66 RVIMAELATKNSKWVEVDTWESLQKEWKETLKVLRH-----HQEKLEASDCDHQQ 115
>pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|B Chain B, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|C Chain C, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
Length = 290
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 74/120 (61%), Gaps = 6/120 (5%)
Query: 14 SKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGL 72
S+ KT VVL+A GSFNP T HLR+FELA+D N G Y V+ G +SPV DAYKK+GL
Sbjct: 12 SENSEKTEVVLLACGSFNPITNXHLRLFELAKDYXNGTGRYTVVKGIISPVGDAYKKKGL 71
Query: 73 ISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQ 132
I A HR+ LA K+S ++ VD WE+ Q ++ TL VL + L ++ DH Q
Sbjct: 72 IPAYHRVIXAELATKNSKWVEVDTWESLQKEWKETLKVLRH-----HQEKLEASDCDHQQ 126
>pdb|3F3M|A Chain A, Six Crystal Structures Of Two Phosphopantetheine
Adenylyltransferases Reveal An Alternative Ligand
Binding Mode And An Associated Structural Change
Length = 168
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRIN 80
+ + V GSF+P T+ HL + E + D + CV+ KK G S E R++
Sbjct: 3 HTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKN--------SKKEGTFSLEERMD 54
Query: 81 LCNLACKSSDFIMVDPWEA------NQSGYQRTLTVLSRVKNFLIEAGLIS 125
L + K + V + Q G + + L V +F E L S
Sbjct: 55 LIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTS 105
>pdb|3DV2|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|C Chain C, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|D Chain D, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
Length = 201
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNL 84
+ G+F+PP + HL + LN E + + P R + S E R+ + L
Sbjct: 6 IIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQG---RNITSVESRLQMLEL 62
Query: 85 ACKSSDFIMVDPWEANQSGYQRTL-TVLSRVKNF 117
A ++ + + E ++ G T T+L K +
Sbjct: 63 ATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKY 96
>pdb|2QTR|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTR|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTR|C Chain C, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
Length = 189
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNL 84
+ G+F+PP + HL + LN E + + P R + S E R+ + L
Sbjct: 6 IIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQG---RNITSVESRLQMLEL 62
Query: 85 ACKSSDFIMVDPWEANQSGYQRTL-TVLSRVKNF 117
A ++ + + E ++ G T T+L K +
Sbjct: 63 ATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKY 96
>pdb|3HFJ|A Chain A, Bacillus Anthracis Nicotinate Mononucleotide
Adenylytransferase (Nadd) In Complex With Inhibitor Cid
3289443
pdb|3HFJ|B Chain B, Bacillus Anthracis Nicotinate Mononucleotide
Adenylytransferase (Nadd) In Complex With Inhibitor Cid
3289443
pdb|3MLA|A Chain A, Banadd In Complex With Inhibitor 1_02
pdb|3MLA|B Chain B, Banadd In Complex With Inhibitor 1_02
pdb|3MLB|A Chain A, Banadd In Complex With Inhibitor 1_02_1
pdb|3MLB|B Chain B, Banadd In Complex With Inhibitor 1_02_1
pdb|3MMX|A Chain A, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|B Chain B, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|C Chain C, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|D Chain D, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|E Chain E, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|F Chain F, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|G Chain G, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|H Chain H, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
Length = 191
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNL 84
+ G+F+PP + HL + LN E + + P R + S E R+ + L
Sbjct: 8 IIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQG---RNITSVESRLQMLEL 64
Query: 85 ACKSSDFIMVDPWEANQSGYQRTL-TVLSRVKNF 117
A ++ + + E ++ G T T+L K +
Sbjct: 65 ATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKY 98
>pdb|2QTM|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTM|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTN|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTN|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|3E27|A Chain A, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|B Chain B, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|C Chain C, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|D Chain D, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
Length = 189
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNL 84
+ G+F+PP + HL + LN E + + P R + S E R+ + L
Sbjct: 6 IIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQG---RDITSVESRLQMLEL 62
Query: 85 ACKSSDFIMVDPWEANQSGYQRTL-TVLSRVKNF 117
A ++ + + E ++ G T T+L K +
Sbjct: 63 ATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKY 96
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 4 PLPLEKLSLESKTQGKTYVVLVATG-----SFNPPTFMHLRMFELARDTLNSEGYCVI 56
P P++ + QG +V+ TG S+ P F+HL ++R+ N G V+
Sbjct: 43 PTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVL 100
>pdb|1O6B|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase With Adp
Length = 169
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 16/81 (19%)
Query: 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLC 82
+ V GSF+P T+ HL + + CV+ N++ KK L S E R L
Sbjct: 4 IAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVL-------NNSSKK-PLFSVEERCELL 55
Query: 83 --------NLACKSSDFIMVD 95
N+ ++S +++D
Sbjct: 56 REVTKDIPNITVETSQGLLID 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,122,951
Number of Sequences: 62578
Number of extensions: 150123
Number of successful extensions: 321
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 11
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)