Query 032168
Match_columns 146
No_of_seqs 122 out of 1109
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 10:30:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02945 nicotinamide-nucleoti 100.0 9.3E-41 2E-45 265.7 13.0 134 1-134 1-144 (236)
2 COG1057 NadD Nicotinic acid mo 100.0 1.2E-38 2.5E-43 248.0 12.5 122 19-144 2-127 (197)
3 PRK06973 nicotinic acid mononu 100.0 3E-37 6.5E-42 246.8 12.8 121 18-144 20-148 (243)
4 TIGR00482 nicotinate (nicotina 100.0 3.1E-37 6.7E-42 238.3 11.1 116 25-143 1-119 (193)
5 PRK00071 nadD nicotinic acid m 100.0 5.1E-36 1.1E-40 233.0 12.5 121 19-143 3-126 (203)
6 PRK07152 nadD putative nicotin 100.0 1.5E-35 3.3E-40 246.4 11.9 121 20-144 1-124 (342)
7 PRK08887 nicotinic acid mononu 100.0 5.1E-35 1.1E-39 223.4 12.3 116 20-144 2-125 (174)
8 cd09286 NMNAT_Eukarya Nicotina 100.0 3.9E-35 8.5E-40 232.2 10.9 122 22-143 1-150 (225)
9 cd02165 NMNAT Nicotinamide/nic 100.0 3E-34 6.5E-39 221.1 11.5 118 22-144 1-121 (192)
10 TIGR01510 coaD_prev_kdtB pante 99.9 8E-26 1.7E-30 169.5 9.7 99 22-141 1-99 (155)
11 KOG3199 Nicotinamide mononucle 99.9 1.6E-25 3.4E-30 173.9 9.5 120 15-134 2-137 (234)
12 PF01467 CTP_transf_2: Cytidyl 99.9 4E-26 8.7E-31 166.2 5.3 104 25-143 1-107 (157)
13 cd02163 PPAT Phosphopantethein 99.9 1.3E-24 2.8E-29 162.8 8.9 93 22-134 1-93 (153)
14 PRK00168 coaD phosphopantethei 99.9 4.4E-23 9.6E-28 155.3 10.8 98 20-138 1-98 (159)
15 cd02167 NMNAT_NadR Nicotinamid 99.8 4.9E-18 1.1E-22 128.0 11.2 74 22-101 1-74 (158)
16 PRK13964 coaD phosphopantethei 99.8 1.3E-17 2.7E-22 123.8 11.8 69 20-97 1-69 (140)
17 cd02039 cytidylyltransferase_l 99.7 1.4E-17 3E-22 120.3 10.1 109 22-137 1-111 (143)
18 TIGR01526 nadR_NMN_Atrans nico 99.7 8.5E-17 1.8E-21 133.4 8.9 74 20-99 1-75 (325)
19 cd02166 NMNAT_Archaea Nicotina 99.7 1.4E-15 2.9E-20 115.1 11.4 99 23-132 2-105 (163)
20 COG0669 CoaD Phosphopantethein 99.6 4.4E-16 9.6E-21 116.6 7.9 71 20-99 2-72 (159)
21 TIGR01527 arch_NMN_Atrans nico 99.6 8.1E-15 1.7E-19 111.4 11.2 100 23-131 2-102 (165)
22 cd02168 NMNAT_Nudix Nicotinami 99.6 5.9E-15 1.3E-19 113.6 10.2 101 23-129 2-108 (181)
23 PRK01153 nicotinamide-nucleoti 99.6 1.4E-14 3E-19 110.9 10.8 62 22-90 2-64 (174)
24 PRK05379 bifunctional nicotina 99.6 1.2E-14 2.5E-19 121.3 11.1 106 19-130 5-114 (340)
25 TIGR00125 cyt_tran_rel cytidyl 99.6 9.5E-15 2.1E-19 93.8 6.6 62 23-90 2-65 (66)
26 TIGR00339 sopT ATP sulphurylas 99.5 7.8E-14 1.7E-18 118.2 10.8 108 11-130 175-289 (383)
27 PRK08099 bifunctional DNA-bind 99.5 2.5E-13 5.4E-18 115.7 11.5 78 19-99 51-132 (399)
28 PRK00777 phosphopantetheine ad 99.5 5.7E-13 1.2E-17 100.0 10.2 64 21-88 2-65 (153)
29 cd02169 Citrate_lyase_ligase C 99.5 1.3E-13 2.8E-18 113.4 6.8 69 20-99 114-182 (297)
30 cd02164 PPAT_CoAS phosphopante 99.4 1.2E-12 2.6E-17 97.3 8.5 63 23-89 2-66 (143)
31 TIGR00124 cit_ly_ligase [citra 99.4 6.3E-13 1.4E-17 110.8 7.7 69 20-99 139-207 (332)
32 cd02170 cytidylyltransferase c 99.4 1.4E-12 3E-17 95.1 7.8 103 20-139 1-105 (136)
33 smart00764 Citrate_ly_lig Citr 99.3 2.7E-12 5.7E-17 98.9 7.4 59 29-97 7-65 (182)
34 cd02156 nt_trans nucleotidyl t 99.2 1.7E-11 3.8E-16 85.8 6.3 56 25-85 3-58 (105)
35 PRK13671 hypothetical protein; 99.1 1.5E-10 3.3E-15 95.3 7.2 60 21-85 2-61 (298)
36 cd02174 CCT CTP:phosphocholine 99.1 4.7E-10 1E-14 84.0 8.9 109 21-143 3-112 (150)
37 PRK13793 nicotinamide-nucleoti 99.1 7.7E-10 1.7E-14 86.3 9.9 63 21-89 5-67 (196)
38 cd02171 G3P_Cytidylyltransfera 99.1 4.8E-10 1E-14 81.0 7.5 94 20-129 1-94 (129)
39 cd02173 ECT CTP:phosphoethanol 99.0 1.2E-09 2.5E-14 82.0 8.3 95 20-131 2-99 (152)
40 PLN02406 ethanolamine-phosphat 99.0 3.5E-09 7.5E-14 90.7 11.1 114 2-129 36-150 (418)
41 COG1056 NadR Nicotinamide mono 98.9 2.7E-09 5.9E-14 81.6 6.2 64 19-88 2-65 (172)
42 cd02064 FAD_synthetase_N FAD s 98.8 3.4E-08 7.3E-13 75.5 8.8 97 26-129 4-108 (180)
43 PTZ00308 ethanolamine-phosphat 98.7 6.8E-08 1.5E-12 81.4 9.3 94 20-130 192-288 (353)
44 COG1019 Predicted nucleotidylt 98.3 1.2E-06 2.5E-11 65.8 5.5 63 18-88 3-69 (158)
45 PRK01170 phosphopantetheine ad 98.3 1.8E-06 3.9E-11 72.0 6.6 58 22-88 2-63 (322)
46 PLN02388 phosphopantetheine ad 98.3 3.1E-06 6.7E-11 65.1 6.7 66 19-89 18-86 (177)
47 cd02172 RfaE_N N-terminal doma 98.2 5.6E-06 1.2E-10 61.4 6.7 59 20-84 4-64 (144)
48 TIGR01518 g3p_cytidyltrns glyc 98.2 3.1E-06 6.6E-11 61.0 5.2 56 26-84 3-58 (125)
49 COG0615 TagD Cytidylyltransfer 98.0 7.4E-06 1.6E-10 60.8 4.7 56 23-84 4-62 (140)
50 PF08218 Citrate_ly_lig: Citra 98.0 2.1E-05 4.6E-10 60.5 6.0 57 29-95 7-63 (182)
51 TIGR02199 rfaE_dom_II rfaE bif 97.9 1.9E-05 4.1E-10 58.5 5.2 70 20-94 11-82 (144)
52 PTZ00308 ethanolamine-phosphat 97.9 6.3E-05 1.4E-09 63.5 8.1 59 20-84 11-71 (353)
53 PF01747 ATP-sulfurylase: ATP- 97.7 0.00041 8.9E-09 54.9 10.1 113 9-130 10-125 (215)
54 PF06574 FAD_syn: FAD syntheta 97.7 6.1E-05 1.3E-09 56.7 4.5 105 19-129 4-115 (157)
55 PLN02413 choline-phosphate cyt 97.7 0.00026 5.7E-09 58.2 8.5 73 18-92 24-96 (294)
56 TIGR00083 ribF riboflavin kina 97.5 0.00039 8.5E-09 57.2 7.7 97 26-129 3-107 (288)
57 PRK11316 bifunctional heptose 97.5 0.00051 1.1E-08 59.2 8.4 68 20-92 340-409 (473)
58 cd00517 ATPS ATP-sulfurylase. 97.5 0.0025 5.4E-08 53.9 11.9 110 11-130 148-262 (353)
59 PRK13670 hypothetical protein; 97.4 0.001 2.2E-08 56.9 9.4 99 28-134 8-110 (388)
60 PRK05627 bifunctional riboflav 97.4 0.00081 1.7E-08 55.8 8.5 102 22-130 15-124 (305)
61 PLN02406 ethanolamine-phosphat 97.4 0.00074 1.6E-08 58.3 7.6 85 19-114 250-336 (418)
62 PRK07143 hypothetical protein; 97.3 0.0018 3.9E-08 53.1 9.3 102 16-129 11-116 (279)
63 COG2046 MET3 ATP sulfurylase ( 97.3 0.0019 4.1E-08 54.9 9.3 110 9-130 173-287 (397)
64 PRK04149 sat sulfate adenylylt 97.1 0.01 2.2E-07 50.9 11.8 111 10-130 177-290 (391)
65 COG3053 CitC Citrate lyase syn 97.1 0.0021 4.6E-08 53.3 6.8 66 18-95 143-209 (352)
66 PRK05537 bifunctional sulfate 96.9 0.018 3.9E-07 51.6 11.6 110 11-129 178-289 (568)
67 PF05636 HIGH_NTase1: HIGH Nuc 96.7 0.0026 5.7E-08 54.4 5.2 51 28-84 8-61 (388)
68 KOG3351 Predicted nucleotidylt 96.7 0.0021 4.5E-08 52.1 4.2 68 16-90 138-210 (293)
69 COG1323 Predicted nucleotidylt 96.2 0.006 1.3E-07 51.8 4.3 53 28-84 8-61 (358)
70 COG0196 RibF FAD synthase [Coe 95.7 0.059 1.3E-06 44.8 7.9 102 20-129 15-124 (304)
71 KOG2803 Choline phosphate cyti 95.1 0.046 9.9E-07 45.8 5.2 56 22-84 9-68 (358)
72 PLN02660 pantoate--beta-alanin 93.8 0.21 4.5E-06 41.3 6.4 58 20-85 21-84 (284)
73 cd00560 PanC Pantoate-beta-ala 92.8 0.4 8.8E-06 39.4 6.5 61 19-85 21-85 (277)
74 KOG4238 Bifunctional ATP sulfu 92.2 0.6 1.3E-05 40.5 6.9 99 23-129 417-526 (627)
75 PRK00380 panC pantoate--beta-a 91.6 0.6 1.3E-05 38.4 6.2 50 33-85 33-85 (281)
76 TIGR00018 panC pantoate--beta- 91.4 0.69 1.5E-05 38.1 6.3 60 20-85 22-85 (282)
77 KOG2804 Phosphorylcholine tran 90.5 0.82 1.8E-05 38.3 6.0 67 16-84 58-125 (348)
78 KOG2803 Choline phosphate cyti 89.7 0.7 1.5E-05 38.9 5.0 56 20-79 198-255 (358)
79 COG1908 FrhD Coenzyme F420-red 89.5 0.88 1.9E-05 33.2 4.7 64 16-89 27-90 (132)
80 PF00837 T4_deiodinase: Iodoth 85.8 4.7 0.0001 32.5 7.4 82 16-98 99-191 (237)
81 PF02569 Pantoate_ligase: Pant 85.0 0.84 1.8E-05 37.6 2.8 64 17-85 19-85 (280)
82 COG2870 RfaE ADP-heptose synth 81.8 4.2 9.1E-05 35.5 5.9 67 22-94 334-403 (467)
83 COG0414 PanC Panthothenate syn 80.0 6.3 0.00014 32.6 6.1 65 16-85 18-85 (285)
84 PRK13477 bifunctional pantoate 78.6 5.5 0.00012 35.5 5.8 60 21-85 21-83 (512)
85 TIGR02069 cyanophycinase cyano 69.0 53 0.0011 26.3 8.9 95 23-136 2-101 (250)
86 COG1167 ARO8 Transcriptional r 66.3 19 0.0004 31.3 6.1 71 52-128 229-313 (459)
87 COG1519 KdtA 3-deoxy-D-manno-o 65.0 17 0.00036 31.8 5.4 96 9-128 222-326 (419)
88 TIGR02321 Pphn_pyruv_hyd phosp 63.2 40 0.00087 27.8 7.2 95 9-115 6-100 (290)
89 KOG3988 Protein-tyrosine sulfo 61.7 17 0.00036 30.7 4.6 25 102-126 159-183 (378)
90 PRK13397 3-deoxy-7-phosphohept 58.9 36 0.00077 27.6 6.1 14 21-34 42-55 (250)
91 cd03145 GAT1_cyanophycinase Ty 56.1 94 0.002 24.1 9.9 97 22-137 2-103 (217)
92 PF00532 Peripla_BP_1: Peripla 54.3 1.1E+02 0.0024 24.4 8.7 103 19-132 79-192 (279)
93 PF02608 Bmp: Basic membrane p 53.8 1.2E+02 0.0025 24.7 8.5 87 19-126 1-91 (306)
94 PRK10906 DNA-binding transcrip 51.6 44 0.00096 26.7 5.5 52 10-62 125-177 (252)
95 PF00578 AhpC-TSA: AhpC/TSA fa 51.3 59 0.0013 21.8 5.5 41 17-57 24-64 (124)
96 COG1036 Archaeal flavoproteins 50.3 40 0.00086 26.1 4.7 21 103-123 21-41 (187)
97 cd00802 class_I_aaRS_core cata 49.0 63 0.0014 23.0 5.6 19 124-142 97-117 (143)
98 cd06300 PBP1_ABC_sugar_binding 48.5 1.2E+02 0.0026 23.1 8.6 57 74-130 139-195 (272)
99 PF00455 DeoRC: DeoR C termina 47.3 23 0.0005 26.3 3.1 67 11-86 54-123 (161)
100 PF13905 Thioredoxin_8: Thiore 44.7 78 0.0017 20.3 5.1 37 20-56 2-39 (95)
101 cd02970 PRX_like2 Peroxiredoxi 44.3 70 0.0015 22.2 5.1 40 18-57 23-62 (149)
102 PRK00553 ribose-phosphate pyro 43.5 2E+02 0.0043 24.2 9.5 80 5-85 41-125 (332)
103 KOG2550 IMP dehydrogenase/GMP 43.4 35 0.00077 30.1 3.9 43 75-122 252-294 (503)
104 PF13344 Hydrolase_6: Haloacid 43.2 25 0.00054 24.0 2.5 30 104-133 64-93 (101)
105 PF13778 DUF4174: Domain of un 42.7 37 0.00081 24.0 3.5 42 103-144 58-110 (118)
106 PRK11320 prpB 2-methylisocitra 42.7 1.4E+02 0.003 24.8 7.2 97 8-115 7-103 (292)
107 PF09949 DUF2183: Uncharacteri 42.6 30 0.00065 24.0 2.9 29 105-133 49-77 (100)
108 KOG3042 Panthothenate syntheta 42.3 23 0.0005 28.6 2.5 43 16-63 20-62 (283)
109 cd02969 PRX_like1 Peroxiredoxi 41.7 78 0.0017 23.0 5.2 42 18-59 24-65 (171)
110 KOG0564 5,10-methylenetetrahyd 40.9 24 0.00052 31.7 2.6 37 85-121 111-147 (590)
111 TIGR02317 prpB methylisocitrat 40.7 1.9E+02 0.0041 23.8 7.7 99 6-116 1-99 (285)
112 PF02662 FlpD: Methyl-viologen 40.2 1.4E+02 0.0029 21.3 6.1 64 16-89 26-89 (124)
113 COG4242 CphB Cyanophycinase an 39.9 61 0.0013 26.8 4.6 103 17-137 20-126 (293)
114 COG0528 PyrH Uridylate kinase 39.9 31 0.00068 27.9 2.9 30 18-47 123-152 (238)
115 cd06353 PBP1_BmpA_Med_like Per 38.1 2E+02 0.0043 22.7 10.0 93 21-134 1-99 (258)
116 PF07429 Glyco_transf_56: 4-al 38.0 53 0.0011 28.2 4.1 39 18-58 183-221 (360)
117 cd06323 PBP1_ribose_binding Pe 37.5 1.8E+02 0.0038 21.9 9.4 59 74-132 135-193 (268)
118 PRK10681 DNA-binding transcrip 36.7 55 0.0012 26.0 3.9 50 12-62 128-178 (252)
119 PRK14536 cysS cysteinyl-tRNA s 36.6 29 0.00063 30.8 2.5 40 16-56 18-65 (490)
120 COG1902 NemA NADH:flavin oxido 36.6 2.1E+02 0.0046 24.3 7.6 81 36-117 150-249 (363)
121 PF13793 Pribosyltran_N: N-ter 36.3 1.5E+02 0.0033 20.8 7.5 79 5-84 32-114 (116)
122 cd06320 PBP1_allose_binding Pe 35.7 2E+02 0.0043 21.9 9.3 59 73-131 135-193 (275)
123 PRK09701 D-allose transporter 35.6 2.3E+02 0.0049 22.6 9.1 59 73-131 169-227 (311)
124 cd05535 POLBc_epsilon DNA poly 34.4 1.3E+02 0.0027 27.8 6.1 84 26-117 141-234 (621)
125 PRK14534 cysS cysteinyl-tRNA s 34.3 29 0.00063 30.8 2.1 36 20-56 20-63 (481)
126 PRK00979 tetrahydromethanopter 34.2 1.4E+02 0.0031 25.0 6.0 65 74-140 161-238 (308)
127 PRK13509 transcriptional repre 34.1 49 0.0011 26.3 3.3 38 20-61 136-176 (251)
128 cd03146 GAT1_Peptidase_E Type 33.9 2.2E+02 0.0047 21.9 8.3 94 22-137 2-100 (212)
129 cd00672 CysRS_core catalytic c 33.4 35 0.00076 26.7 2.3 42 16-58 17-64 (213)
130 PRK14568 vanB D-alanine--D-lac 33.4 93 0.002 25.7 4.9 43 18-61 2-44 (343)
131 PF07767 Nop53: Nop53 (60S rib 33.2 37 0.00081 28.8 2.5 23 26-48 183-205 (387)
132 KOG0741 AAA+-type ATPase [Post 32.7 2.1E+02 0.0045 26.5 7.1 94 32-134 546-653 (744)
133 COG0529 CysC Adenylylsulfate k 32.3 1.1E+02 0.0024 24.0 4.8 33 51-95 94-126 (197)
134 PF08747 DUF1788: Domain of un 32.1 26 0.00055 25.4 1.2 27 18-44 60-87 (126)
135 PRK13608 diacylglycerol glucos 31.9 1.1E+02 0.0024 25.6 5.2 27 20-47 202-228 (391)
136 PF02698 DUF218: DUF218 domain 31.4 1.4E+02 0.0029 21.3 5.0 30 28-57 16-45 (155)
137 PRK05096 guanosine 5'-monophos 31.3 1E+02 0.0022 26.4 4.7 44 76-122 110-153 (346)
138 PF01820 Dala_Dala_lig_N: D-al 31.2 1.1E+02 0.0023 21.4 4.3 44 20-64 1-44 (117)
139 TIGR02319 CPEP_Pphonmut carbox 30.7 2.8E+02 0.006 23.0 7.2 96 9-115 7-102 (294)
140 PF00534 Glycos_transf_1: Glyc 30.4 64 0.0014 22.9 3.1 38 9-48 4-41 (172)
141 COG0647 NagD Predicted sugar p 29.9 1.9E+02 0.0041 23.6 6.1 30 105-134 76-105 (269)
142 PRK15480 glucose-1-phosphate t 29.8 3.1E+02 0.0067 22.3 7.5 34 101-134 83-117 (292)
143 PF08386 Abhydrolase_4: TAP-li 29.2 45 0.00097 22.7 2.0 39 17-58 32-70 (103)
144 PRK02797 4-alpha-L-fucosyltran 28.9 1.3E+02 0.0028 25.5 5.0 37 21-58 146-182 (322)
145 PRK12595 bifunctional 3-deoxy- 28.8 2.1E+02 0.0045 24.3 6.3 12 24-35 148-159 (360)
146 PRK11475 DNA-binding transcrip 28.6 2E+02 0.0043 22.1 5.8 42 87-129 35-78 (207)
147 COG2813 RsmC 16S RNA G1207 met 27.9 53 0.0012 27.4 2.5 28 31-58 231-267 (300)
148 PF08897 DUF1841: Domain of un 27.3 54 0.0012 24.3 2.2 18 27-44 59-78 (137)
149 cd06308 PBP1_sensor_kinase_lik 27.1 2.8E+02 0.0061 21.0 8.9 60 73-132 135-194 (270)
150 COG0162 TyrS Tyrosyl-tRNA synt 26.9 4.2E+02 0.0092 23.0 8.4 37 29-65 42-80 (401)
151 COG1323 Predicted nucleotidylt 26.8 3.8E+02 0.0082 23.0 7.5 48 16-64 28-78 (358)
152 cd06310 PBP1_ABC_sugar_binding 26.5 2.9E+02 0.0062 20.9 9.1 59 73-131 136-194 (273)
153 cd03812 GT1_CapH_like This fam 26.3 1.5E+02 0.0033 23.3 4.9 30 101-130 204-233 (358)
154 PRK10434 srlR DNA-bindng trans 26.2 1.6E+02 0.0034 23.5 4.9 40 20-62 136-178 (256)
155 COG2390 DeoR Transcriptional r 25.9 47 0.001 27.9 1.9 48 8-58 41-88 (321)
156 cd04198 eIF-2B_gamma_N The N-t 25.6 3E+02 0.0064 20.8 8.9 32 102-134 84-115 (214)
157 PRK14535 cysS cysteinyl-tRNA s 25.5 51 0.0011 30.7 2.2 41 17-58 244-292 (699)
158 COG3618 Predicted metal-depend 25.4 3.9E+02 0.0085 22.1 7.5 57 70-129 175-236 (279)
159 COG4753 Response regulator con 25.2 2E+02 0.0044 25.6 5.7 53 78-133 37-90 (475)
160 CHL00163 ycf65 putative riboso 25.0 69 0.0015 22.5 2.3 43 70-122 52-94 (99)
161 PRK09257 aromatic amino acid a 24.9 3.1E+02 0.0068 22.7 6.7 31 52-88 174-204 (396)
162 cd00805 TyrRS_core catalytic c 24.8 2.4E+02 0.0052 22.7 5.8 33 28-60 9-43 (269)
163 PF04522 DUF585: Protein of un 24.8 36 0.00078 27.4 0.9 13 20-34 62-74 (248)
164 KOG1573 Aldehyde reductase [Ge 24.6 1.4E+02 0.003 23.1 4.0 44 73-122 73-116 (204)
165 TIGR02193 heptsyl_trn_I lipopo 24.1 79 0.0017 25.4 2.9 26 102-127 11-37 (319)
166 TIGR03447 mycothiol_MshC cyste 24.0 44 0.00096 29.0 1.4 37 21-58 36-80 (411)
167 cd00671 ArgRS_core catalytic c 23.8 23 0.0005 27.4 -0.3 18 124-141 163-182 (212)
168 PF12119 DUF3581: Protein of u 23.8 30 0.00065 27.6 0.3 23 27-50 29-60 (218)
169 COG0763 LpxB Lipid A disacchar 23.7 2E+02 0.0043 24.9 5.3 43 76-123 72-114 (381)
170 KOG2655 Septin family protein 23.6 1.4E+02 0.0029 25.8 4.2 59 69-131 167-227 (366)
171 PLN02289 ribulose-bisphosphate 23.5 50 0.0011 25.5 1.5 24 110-133 141-164 (176)
172 cd03789 GT1_LPS_heptosyltransf 23.4 93 0.002 24.5 3.1 28 102-129 11-39 (279)
173 PRK03092 ribose-phosphate pyro 23.4 4.2E+02 0.0092 21.8 9.4 123 5-130 21-157 (304)
174 cd00158 RHOD Rhodanese Homolog 23.4 1.9E+02 0.0041 17.7 4.2 49 5-59 33-84 (89)
175 PRK15481 transcriptional regul 23.3 2.9E+02 0.0063 23.2 6.3 30 53-88 215-244 (431)
176 PLN02404 6,7-dimethyl-8-ribity 23.2 2.1E+02 0.0046 21.1 4.7 43 16-59 4-51 (141)
177 PF02016 Peptidase_S66: LD-car 22.9 2.6E+02 0.0057 22.6 5.7 62 22-90 1-62 (284)
178 PRK13354 tyrosyl-tRNA syntheta 22.7 5E+02 0.011 22.4 7.7 44 20-63 32-79 (410)
179 PF10264 Stork_head: Winged he 22.5 68 0.0015 21.6 1.8 25 98-122 22-47 (80)
180 PRK05799 coproporphyrinogen II 22.2 4.6E+02 0.0099 21.8 9.3 29 21-49 53-81 (374)
181 PLN02946 cysteine-tRNA ligase 22.2 59 0.0013 29.4 1.9 42 16-58 75-124 (557)
182 PRK10964 ADP-heptose:LPS hepto 22.1 78 0.0017 25.6 2.5 27 102-128 12-39 (322)
183 cd06313 PBP1_ABC_sugar_binding 21.8 3.7E+02 0.0081 20.6 9.1 60 73-132 136-195 (272)
184 COG2138 Sirohydrochlorin ferro 21.7 1.2E+02 0.0026 24.4 3.4 38 27-64 31-75 (245)
185 KOG1838 Alpha/beta hydrolase [ 21.7 81 0.0018 27.5 2.6 20 110-129 187-206 (409)
186 PRK15411 rcsA colanic acid cap 21.6 3.2E+02 0.0068 20.8 5.7 52 73-130 34-88 (207)
187 CHL00130 rbcS ribulose-1,5-bis 21.4 61 0.0013 24.0 1.5 24 110-133 67-90 (138)
188 cd07025 Peptidase_S66 LD-Carbo 21.4 2.7E+02 0.0059 22.4 5.5 48 39-89 14-61 (282)
189 PRK10411 DNA-binding transcrip 21.4 1.2E+02 0.0027 23.9 3.5 40 20-62 136-178 (240)
190 cd03018 PRX_AhpE_like Peroxire 21.4 2.2E+02 0.0047 19.7 4.5 36 21-56 31-66 (149)
191 TIGR02981 phageshock_pspE phag 21.3 2E+02 0.0044 19.5 4.1 50 4-59 40-92 (101)
192 COG1844 Uncharacterized protei 21.3 85 0.0019 22.8 2.2 34 108-141 69-107 (125)
193 PF14034 Spore_YtrH: Sporulati 21.2 37 0.00079 24.0 0.3 11 23-34 50-60 (102)
194 PRK10916 ADP-heptose:LPS hepto 21.2 1E+02 0.0022 25.2 3.1 28 102-129 12-40 (348)
195 PTZ00056 glutathione peroxidas 21.2 2.5E+02 0.0054 21.4 5.0 38 20-57 40-77 (199)
196 COG1611 Predicted Rossmann fol 20.9 2E+02 0.0044 22.4 4.5 42 16-57 11-52 (205)
197 COG0036 Rpe Pentose-5-phosphat 20.9 4.4E+02 0.0095 21.0 6.8 86 26-130 112-200 (220)
198 TIGR02201 heptsyl_trn_III lipo 20.8 1.2E+02 0.0026 24.7 3.4 27 102-128 11-38 (344)
199 cd06288 PBP1_sucrose_transcrip 20.7 3.7E+02 0.008 20.1 6.5 58 74-131 130-188 (269)
200 PF13407 Peripla_BP_4: Peripla 20.7 3.7E+02 0.0079 20.2 5.9 71 39-119 110-182 (257)
201 cd03012 TlpA_like_DipZ_like Tl 20.1 2.9E+02 0.0064 18.7 5.2 38 20-57 24-61 (126)
No 1
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=100.00 E-value=9.3e-41 Score=265.74 Aligned_cols=134 Identities=70% Similarity=1.101 Sum_probs=128.0
Q ss_pred CCCCCChhhhhcccc-cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHH
Q 032168 1 MDVPLPLEKLSLESK-TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRI 79 (146)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~ 79 (146)
||+|+|..|++..+. .++|..++++|||||||||+||+.+++.|.+.+++|++++|+++++|+++++.|+..+++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl 80 (236)
T PLN02945 1 MDVPLPTEKLSCGANSTGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKKGLASAEHRI 80 (236)
T ss_pred CCCCchHHHHhhhhcCccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccccCCCCCHHHHH
Confidence 899999999999996 7788999999999999999999999999999999999999999999999998888899999999
Q ss_pred HHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcC--------CCCe-eeeeccchHHH
Q 032168 80 NLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLI--------EAGL-ISTGMDHMQKF 134 (146)
Q Consensus 80 ~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p--------~~~~-~liG~D~l~~l 134 (146)
+|+++|+++++++.|++||+++++++||++||++++++|| +.+| ||||+|++.+|
T Consensus 81 ~Ml~lai~~~~~~~V~~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l 144 (236)
T PLN02945 81 QMCQLACEDSDFIMVDPWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDLLESF 144 (236)
T ss_pred HHHHHHhcCCCCeEecHHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhHHHhc
Confidence 9999999999999999999999999999999999999984 6788 99999999999
No 2
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-38 Score=247.96 Aligned_cols=122 Identities=26% Similarity=0.408 Sum_probs=113.0
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeccc
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E 98 (146)
.++|++ |||||||||.||+.++++|.+.+++|+|+++|+.++|+++ +++.+|.+||++|+++|+++.+.+.|+++|
T Consensus 2 ~~~i~l-fGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p~k~---~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e 77 (197)
T COG1057 2 MKKIAL-FGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKK---KKELASAEHRLAMLELAIEDNPRFEVSDRE 77 (197)
T ss_pred CceEEE-eccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCCCCC---CccCCCHHHHHHHHHHHHhcCCCcceeHHH
Confidence 467777 7999999999999999999999999999999999999872 368999999999999999999999999999
Q ss_pred ccCCCccchHHHHHHHH-HHcCCCCe-eeeeccchHHH--HHHHHHHHhh
Q 032168 99 ANQSGYQRTLTVLSRVK-NFLIEAGL-ISTGMDHMQKF--WCDLYTQRRT 144 (146)
Q Consensus 99 ~~~~~~~yT~~tl~~l~-~~~p~~~~-~liG~D~l~~l--W~~~~~~~~~ 144 (146)
..+++++||++||++++ +.+|+.+| ||||+|++.+| |+++.+++..
T Consensus 78 ~~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~~~ell~~ 127 (197)
T COG1057 78 IKRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYDWDELLKL 127 (197)
T ss_pred HHcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhhHHHHHHh
Confidence 99999999999999999 66789899 99999999999 9888887753
No 3
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=3e-37 Score=246.83 Aligned_cols=121 Identities=22% Similarity=0.258 Sum_probs=108.4
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC----CCeE
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS----DFIM 93 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~----~~i~ 93 (146)
.+++|++ |||||||||+||+.++++|.+++++|+|+|||++.+|+ |+..+++++|++|+++|+++. +++.
T Consensus 20 ~~~~Igi-fGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp~-----K~~~~~~~~Rl~M~~lAi~~~~~~~~~~~ 93 (243)
T PRK06973 20 RPRRIGI-LGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPWQ-----KADVSAAEHRLAMTRAAAASLVLPGVTVR 93 (243)
T ss_pred CCceEEE-ECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCCC-----CCCCCCHHHHHHHHHHHHHhccCCCceEE
Confidence 4457777 69999999999999999999999999999999987665 356789999999999999964 4899
Q ss_pred EecccccCCCccchHHHHHHHHHHc-CCCCe-eeeeccchHHH--HHHHHHHHhh
Q 032168 94 VDPWEANQSGYQRTLTVLSRVKNFL-IEAGL-ISTGMDHMQKF--WCDLYTQRRT 144 (146)
Q Consensus 94 v~~~E~~~~~~~yT~~tl~~l~~~~-p~~~~-~liG~D~l~~l--W~~~~~~~~~ 144 (146)
|+++|+++++++||++||++++++| |+.+| ||||+|++.+| |++..++++.
T Consensus 94 v~~~Ei~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~~~~~L~~~ 148 (243)
T PRK06973 94 VATDEIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWRDWRRLFDY 148 (243)
T ss_pred EeHhhhhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhcCCcccHHHHHHh
Confidence 9999999999999999999999999 89999 99999999999 8777766653
No 4
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=100.00 E-value=3.1e-37 Score=238.32 Aligned_cols=116 Identities=25% Similarity=0.361 Sum_probs=107.8
Q ss_pred EeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccCCCc
Q 032168 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGY 104 (146)
Q Consensus 25 lfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~ 104 (146)
+|||||||||+||+.+++.|++.+++|+++|+|++.+|+++ +...+++++|++|+++|+++++++.|+++|.+++++
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p~k~---~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~ 77 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKK---TYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGP 77 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCC---CCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCC
Confidence 37999999999999999999999999999999999999873 245689999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCCCCe-eeeeccchHHH--HHHHHHHHh
Q 032168 105 QRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF--WCDLYTQRR 143 (146)
Q Consensus 105 ~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l--W~~~~~~~~ 143 (146)
+||++||++++++||+.+| ||||+|++.+| |++..+.++
T Consensus 78 syT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~ 119 (193)
T TIGR00482 78 SYTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLE 119 (193)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHH
Confidence 9999999999999999999 99999999999 887777665
No 5
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=5.1e-36 Score=232.98 Aligned_cols=121 Identities=21% Similarity=0.319 Sum_probs=110.5
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeccc
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E 98 (146)
+++|++ |||||||||+||+.+++.|++.+++|+++++|+..+|.+. ++..++.++|++|+++|+++.+++.|+++|
T Consensus 3 ~~~i~i-~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~~k~---~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E 78 (203)
T PRK00071 3 MKRIGL-FGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKP---QKPLAPLEHRLAMLELAIADNPRFSVSDIE 78 (203)
T ss_pred CcEEEE-EeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCC---CCCCCCHHHHHHHHHHHhcCCCceEEeHHH
Confidence 467777 6999999999999999999999999999999988777652 236899999999999999999999999999
Q ss_pred ccCCCccchHHHHHHHHHHcCCCCe-eeeeccchHHH--HHHHHHHHh
Q 032168 99 ANQSGYQRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF--WCDLYTQRR 143 (146)
Q Consensus 99 ~~~~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l--W~~~~~~~~ 143 (146)
+++++++||++||++++++||+.+| ||||+|++.+| |++..+.++
T Consensus 79 ~~~~~~syT~~tl~~l~~~~p~~~~~fiiG~D~l~~l~~W~~~~~i~~ 126 (203)
T PRK00071 79 LERPGPSYTIDTLRELRARYPDVELVFIIGADALAQLPRWKRWEEILD 126 (203)
T ss_pred HhCCCCCCHHHHHHHHHHHCCCCcEEEEEcHHHhhhcccccCHHHHHH
Confidence 9999999999999999999999999 99999999999 887776665
No 6
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=100.00 E-value=1.5e-35 Score=246.42 Aligned_cols=121 Identities=21% Similarity=0.362 Sum_probs=109.5
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
|+|++ |||||||||+||+.+++.|++.+++|+|+|+|+..+|+|. +....++++|++|+++|+++++++.|+++|+
T Consensus 1 m~i~i-~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~p~K~---~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~ 76 (342)
T PRK07152 1 MKIAI-FGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKK---KQKASNGEHRLNMLKLALKNLPKMEVSDFEI 76 (342)
T ss_pred CeEEE-EeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCC---CCCCCCHHHHHHHHHHHHhhCCCeEEeHHHH
Confidence 46777 6999999999999999999999999999999999888862 2344556999999999999999999999999
Q ss_pred cCCCccchHHHHHHHHHHcCCCCe-eeeeccchHHH--HHHHHHHHhh
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF--WCDLYTQRRT 144 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l--W~~~~~~~~~ 144 (146)
++++++||++||++++++||+.+| ||||+|++.+| |++..+.++.
T Consensus 77 ~~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~~W~~~~~l~~~ 124 (342)
T PRK07152 77 KRQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKNIEEILKK 124 (342)
T ss_pred hCCCCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcccccCHHHHHHh
Confidence 999999999999999999999999 99999999999 8887776653
No 7
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=5.1e-35 Score=223.45 Aligned_cols=116 Identities=17% Similarity=0.245 Sum_probs=102.1
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC--CCeEEecc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS--DFIMVDPW 97 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~--~~i~v~~~ 97 (146)
++|++ |||||||||+||+.+++++ . .+|+|+|+|+...|.+ +..+++++|++|+++|+++. +++.|+++
T Consensus 2 ~~i~i-fGGSFDP~H~GHl~ia~~~-~--~~d~v~~vP~~~~~~~-----k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~ 72 (174)
T PRK08887 2 KKIAV-FGSAFNPPSLGHKSVIESL-S--HFDLVLLVPSIAHAWG-----KTMLDYETRCQLVDAFIQDLGLSNVQRSDI 72 (174)
T ss_pred CeEEE-eCCCCCCCCHHHHHHHHHh-h--cCCEEEEEECCCCccc-----CCCCCHHHHHHHHHHHHhccCCCceEEehH
Confidence 46777 6999999999999999984 2 5799999998754443 37789999999999999985 79999999
Q ss_pred cccC---CCccchHHHHHHHHHHcCCCCe-eeeeccchHHH--HHHHHHHHhh
Q 032168 98 EANQ---SGYQRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF--WCDLYTQRRT 144 (146)
Q Consensus 98 E~~~---~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l--W~~~~~~~~~ 144 (146)
|.++ ++++||++||++++++||+.+| ||||+|++.+| |++..+.+++
T Consensus 73 E~~~~~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~ 125 (174)
T PRK08887 73 EQELYAPDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKFYKADEITQR 125 (174)
T ss_pred HhhhccCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHHhCCHHHHHhh
Confidence 9988 7899999999999999999999 99999999999 8887776654
No 8
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=100.00 E-value=3.9e-35 Score=232.17 Aligned_cols=122 Identities=52% Similarity=0.841 Sum_probs=111.4
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHHHhhCCCc-EEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeccccc
Q 032168 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (146)
Q Consensus 22 i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~-v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~ 100 (146)
|+++|||||||||+||+.+++.|.+.++.++ +.+++++++|.++++.|+..+++++|++|+++|++++++++|++||.+
T Consensus 1 ~~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E~~ 80 (225)
T cd09286 1 VVLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCRLAVQSSDWIRVDDWESL 80 (225)
T ss_pred CEEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHHHHHccCCCEEEEehhcc
Confidence 5778999999999999999999999998877 678888889988888888889999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHHHcC-------------------CCCe-eeeeccchHHH-----HHH--HHHHHh
Q 032168 101 QSGYQRTLTVLSRVKNFLI-------------------EAGL-ISTGMDHMQKF-----WCD--LYTQRR 143 (146)
Q Consensus 101 ~~~~~yT~~tl~~l~~~~p-------------------~~~~-~liG~D~l~~l-----W~~--~~~~~~ 143 (146)
+++++||++||++++++|| +.+| ||||+|++.+| |++ ..++++
T Consensus 81 ~~~~syT~~TL~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~e~ll~ 150 (225)
T cd09286 81 QPEWMRTAKVLRHHREEINNKYGGIEGAAKRVLDGSRREVKIMLLCGADLLESFGIPGLWKDADLEEILG 150 (225)
T ss_pred CCccccHHHHHHHHHHHhcccccccccccccccccccCCceEEEEecHhHHHhcCCCCcCCHHHHHHHHH
Confidence 9999999999999999998 6889 99999999998 873 566554
No 9
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=100.00 E-value=3e-34 Score=221.07 Aligned_cols=118 Identities=25% Similarity=0.348 Sum_probs=107.7
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccC
Q 032168 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQ 101 (146)
Q Consensus 22 i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~ 101 (146)
|++ |||||||||+||+.+++.|++.++.|+|+|+|+..+|.+ +...+++++|++|+++++++.+++.|+++|.++
T Consensus 1 i~i-~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~~k----~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~ 75 (192)
T cd02165 1 IAL-FGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPPHK----PPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKR 75 (192)
T ss_pred CeE-EeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCC----CCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhC
Confidence 355 799999999999999999999999999999998766643 357889999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHcCCCCe-eeeeccchHHH--HHHHHHHHhh
Q 032168 102 SGYQRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF--WCDLYTQRRT 144 (146)
Q Consensus 102 ~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l--W~~~~~~~~~ 144 (146)
++++||++||++++++||+.+| ||||+|++.+| |++..+.++.
T Consensus 76 ~~~~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~~~W~~~~~i~~~ 121 (192)
T cd02165 76 DGPSYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWEELLSL 121 (192)
T ss_pred CCCCCHHHHHHHHHHhccCCCEEEEEcHHHhhhcccccCHHHHHHh
Confidence 9999999999999999999999 99999999999 8888776653
No 10
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.93 E-value=8e-26 Score=169.51 Aligned_cols=99 Identities=22% Similarity=0.267 Sum_probs=84.0
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccC
Q 032168 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQ 101 (146)
Q Consensus 22 i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~ 101 (146)
||+ |||||||+|+||+.++++|++.+ |+++++|+ .+|.+ +..++.++|++|+++|+++.+++.|+++|
T Consensus 1 i~l-~gGsFdP~H~GHl~l~~~a~~~~--d~v~~~~~-~~p~k-----~~~~~~~~R~~m~~~a~~~~~~~~v~~~e--- 68 (155)
T TIGR01510 1 IAL-YPGSFDPVTNGHLDIIKRAAALF--DEVIVAVA-KNPSK-----KPLFSLEERVELIKDATKHLPNVRVDVFD--- 68 (155)
T ss_pred CEE-EEeecCCCcHHHHHHHHHHHHhC--CEEEEEEc-CCCCC-----CCCcCHHHHHHHHHHHHhhCCCeEEcCcc---
Confidence 456 79999999999999999999996 89999987 45543 46799999999999999999999999998
Q ss_pred CCccchHHHHHHHHHHcCCCCeeeeeccchHHHHHHHHHH
Q 032168 102 SGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKFWCDLYTQ 141 (146)
Q Consensus 102 ~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~lW~~~~~~ 141 (146)
+||++|+++++.. +|++|.|++.+ |..+.++
T Consensus 69 ---~yt~dt~~~l~~~-----~~i~G~~~~~~-~~~~~~~ 99 (155)
T TIGR01510 69 ---GLLVDYAKELGAT-----FIVRGLRAATD-FEYELQM 99 (155)
T ss_pred ---chHHHHHHHcCCC-----EEEecCcchhh-HHHHHHH
Confidence 6999999999843 38899999888 5544433
No 11
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=99.93 E-value=1.6e-25 Score=173.95 Aligned_cols=120 Identities=48% Similarity=0.747 Sum_probs=110.9
Q ss_pred ccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhh-CCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeE
Q 032168 15 KTQGKTYVVLVATGSFNPPTFMHLRMFELARDTL-NSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIM 93 (146)
Q Consensus 15 ~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~-~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~ 93 (146)
+++++.+++++.+||||||+++|+.|.+.|++++ +-.+..|+.|++||.+|+|+|++++++-||+.|+++|.++.+|+.
T Consensus 2 ~~~~~~~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkKKgLipa~hrv~~~ElAt~~Skwl~ 81 (234)
T KOG3199|consen 2 EDSEKTPVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKKKGLIPAYHRVRMVELATETSKWLM 81 (234)
T ss_pred CCcccceEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecccchhhhccccchhhhHHHHHHhhhcccccee
Confidence 3678899999999999999999999999999999 667899999999999999999999999999999999999999999
Q ss_pred EecccccCCCccchHHHHHHHHHHc--------------CCCCe-eeeeccchHHH
Q 032168 94 VDPWEANQSGYQRTLTVLSRVKNFL--------------IEAGL-ISTGMDHMQKF 134 (146)
Q Consensus 94 v~~~E~~~~~~~yT~~tl~~l~~~~--------------p~~~~-~liG~D~l~~l 134 (146)
+++||.-|+.+..|+++|+|+.++. .+.++ +++|+|.+.+|
T Consensus 82 vD~weslQ~~wt~T~~vlrHhqe~~~~kr~~~~~~~~~k~~~kVmLlcG~Dliesf 137 (234)
T KOG3199|consen 82 VDGWESLQKEWTRTVKVLRHHQEELNRKRGGTELSPGTKSDVKVMLLCGGDLIESF 137 (234)
T ss_pred cchhhhccHHHhhhhHHHHHHHHHHHHHhccccccccccCCceEEEEeCchHHHhc
Confidence 9999999999999999999998622 23456 78999999999
No 12
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.92 E-value=4e-26 Score=166.21 Aligned_cols=104 Identities=30% Similarity=0.487 Sum_probs=88.4
Q ss_pred EeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccCCCc
Q 032168 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGY 104 (146)
Q Consensus 25 lfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~ 104 (146)
+|||||||||.||+.+++.|++.++.+.++++++..+|.++ ++..++.++|++|++.+++..+++.|++||.++.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~---~~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~-- 75 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKD---KKPIFSFEERLEMLRAAFKDDPNIEVDDWELEQD-- 75 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHST---TSSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSS--
T ss_pred CeeeEcCcccHHHHHHHHHHHHhcccccccccccccccccc---ccccCcHHHHHHHHHHHHhhcCCccccchhHHhH--
Confidence 47999999999999999999999987779999999888763 2478999999999999999999999999999887
Q ss_pred cchHHHHHHHHHHcCCCCe-eeeeccchHHH--HHHHHHHHh
Q 032168 105 QRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF--WCDLYTQRR 143 (146)
Q Consensus 105 ~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l--W~~~~~~~~ 143 (146)
++.+|+.++ |++|+|++.++ |++..+.+.
T Consensus 76 ----------~~~~~~~~~~~v~g~D~~~~~~~~~~~~~~~~ 107 (157)
T PF01467_consen 76 ----------KKKYPDVKIYFVIGADNLRNFPKWRDWQEILK 107 (157)
T ss_dssp ----------HHHSTSSCEEEEEECTHHEEEEESTTHHHHHH
T ss_pred ----------hhhccccccceeccCCceeeecCCCcHHHHHH
Confidence 889999999 99999998888 666655554
No 13
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.91 E-value=1.3e-24 Score=162.77 Aligned_cols=93 Identities=26% Similarity=0.347 Sum_probs=82.0
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccC
Q 032168 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQ 101 (146)
Q Consensus 22 i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~ 101 (146)
|++ |||||||+|.||+.++++|.+.+ |+++|+|+. +|. |+..++.++|++|+++|+++.+++.|+++|
T Consensus 1 i~i-~gGsFdP~H~GHl~l~~~a~~~~--d~v~v~~~~-~~~-----k~~~~~~~~R~~ml~~a~~~~~~~~v~~~e--- 68 (153)
T cd02163 1 IAV-YPGSFDPITNGHLDIIERASKLF--DEVIVAVAV-NPS-----KKPLFSLEERVELIREATKHLPNVEVDGFD--- 68 (153)
T ss_pred CEE-EEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcC-CCC-----CCCCCCHHHHHHHHHHHHcCCCCEEecCCc---
Confidence 355 79999999999999999999986 899999873 342 457899999999999999999999999886
Q ss_pred CCccchHHHHHHHHHHcCCCCeeeeeccchHHH
Q 032168 102 SGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF 134 (146)
Q Consensus 102 ~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l 134 (146)
+||++|+++++..| |++|.|++.++
T Consensus 69 ---s~t~~~l~~l~~~~-----~i~G~d~~~~~ 93 (153)
T cd02163 69 ---GLLVDFARKHGANV-----IVRGLRAVSDF 93 (153)
T ss_pred ---chHHHHHHHcCCCE-----EEECCcchhhH
Confidence 89999999998765 89999999885
No 14
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.89 E-value=4.4e-23 Score=155.30 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=82.5
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
|++|+ |||||||+|.||+.++++|.+.+ |+++|+++. +|. |+..+++++|++|+++|+++.+++.|+++|
T Consensus 1 ~~igi-~gGsFdP~H~GHl~~~~~a~~~~--d~v~v~~~~-~~~-----k~~~~~~~~R~~ml~~a~~~~~~v~v~~~e- 70 (159)
T PRK00168 1 MKIAI-YPGSFDPITNGHLDIIERASRLF--DEVIVAVAI-NPS-----KKPLFSLEERVELIREATAHLPNVEVVSFD- 70 (159)
T ss_pred CcEEE-EeeecCCCCHHHHHHHHHHHHHC--CEEEEEECC-CCC-----CCCCCCHHHHHHHHHHHHcCCCCEEEecCC-
Confidence 46788 69999999999999999999997 899988764 342 467899999999999999999999999887
Q ss_pred cCCCccchHHHHHHHHHHcCCCCeeeeeccchHHHHHHH
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKFWCDL 138 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~lW~~~ 138 (146)
+||++|+++++.. +|+.|.|++.+ |...
T Consensus 71 -----~~t~~~~~~~~~~-----~~~~gl~~w~d-~e~~ 98 (159)
T PRK00168 71 -----GLLVDFAREVGAT-----VIVRGLRAVSD-FEYE 98 (159)
T ss_pred -----ccHHHHHHHcCCC-----EEEecCcchhh-HHHH
Confidence 7899999877643 38999998777 5544
No 15
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.77 E-value=4.9e-18 Score=127.98 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=64.8
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccC
Q 032168 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQ 101 (146)
Q Consensus 22 i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~ 101 (146)
+++ |||||||+|+||+.++++|++.+ |+++|+++..++.+ .++..++.++|++|++.++++.+++.|+.+|...
T Consensus 1 igl-~~G~F~P~H~GHl~li~~a~~~~--d~v~vi~~~~~~~~---~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d 74 (158)
T cd02167 1 IGI-VFGKFAPLHTGHVYLIYKALSQV--DELLIIVGSDDTRD---DARTGLPLEKRLRWLREIFPDQENIVVHTLNEPD 74 (158)
T ss_pred CEE-EeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCccc---ccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 355 69999999999999999999996 89999998776665 2467899999999999999999999999998754
No 16
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.76 E-value=1.3e-17 Score=123.76 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=59.4
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPW 97 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~ 97 (146)
|++++ |||||||+|+||+.++++|.+.+ |+++|+++. +|. |+..++.++|++|+++++++.++++|..+
T Consensus 1 mkiai-~~GSFDPih~GHl~ii~~A~~~~--D~v~v~v~~-np~-----K~~~~s~e~R~~~l~~~~~~~~~v~v~~~ 69 (140)
T PRK13964 1 MKIAI-YPGSFDPFHKGHLNILKKALKLF--DKVYVVVSI-NPD-----KSNASDLDSRFKNVKNKLKDFKNVEVLIN 69 (140)
T ss_pred CeEEE-EeeeeCCCCHHHHHHHHHHHHhC--CEEEEEecc-CCC-----CCCCCCHHHHHHHHHHHHcCCCCcEEecC
Confidence 45777 69999999999999999999986 799998874 453 45679999999999999999999988754
No 17
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.74 E-value=1.4e-17 Score=120.33 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=81.1
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccC
Q 032168 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQ 101 (146)
Q Consensus 22 i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~ 101 (146)
|++ +||||||+|.||++++++|++.. .++++|+++...|.+.. .+...+.++|++|++.+.++.. .+..++.+.
T Consensus 1 ~~~-~~G~Fdp~H~GH~~ll~~a~~~~-~~~~~v~~~~~~~~~~~--~~~~~~~~~R~~~l~~~~~~~~--~v~~~~~~~ 74 (143)
T cd02039 1 VGI-IIGRFEPFHLGHLKLIKEALEEA-LDEVIIIIVSNPPKKKR--NKDPFSLHERVEMLKEILKDRL--KVVPVDFPE 74 (143)
T ss_pred CeE-EeeccCCcCHHHHHHHHHHHHHc-CCceEEEEcCCChhhcc--cccCCCHHHHHHHHHHhccCCc--EEEEEecCh
Confidence 355 69999999999999999999987 57888887654443210 2478999999999999988333 455566655
Q ss_pred CCccchHHHHHHHHHHcCCCCeeeeeccchHHH--HHH
Q 032168 102 SGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF--WCD 137 (146)
Q Consensus 102 ~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l--W~~ 137 (146)
..++++.+.+..+...++ ...+++|+|....+ |.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~-~~~~v~G~d~~~~~~~~~~ 111 (143)
T cd02039 75 VKILLAVVFILKILLKVG-PDKVVVGEDFAFGKNASYN 111 (143)
T ss_pred hhccCHHHHHHHHHHHcC-CcEEEECCccccCCchhhh
Confidence 566778766665555543 34499999999999 984
No 18
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=99.69 E-value=8.5e-17 Score=133.44 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=64.6
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCC-eEEeccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDF-IMVDPWE 98 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~-i~v~~~E 98 (146)
|++++ |||||||+|+||+.+++.|++.+ |+++|+|+..+|.. +++..++.++|++|+++++++.+. ++|.+++
T Consensus 1 ~~i~i-~~GsFdP~H~GHl~ii~~a~~~~--d~v~v~~~~~~~~~---~~~~~~~~~~R~~~l~~~~~~~~~~v~v~~~~ 74 (325)
T TIGR01526 1 KTIGV-VFGKFYPLHTGHIYLIYEAFSKV--DELHIVVGSLFYDS---KAKRPPPVQDRLRWLREIFKYQKNQIFIHHLN 74 (325)
T ss_pred CcEEE-EeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCcCc---cCCCCCCHHHHHHHHHHHhccCCCeEEEEEcC
Confidence 45777 69999999999999999999995 89999998766653 246789999999999999999999 9999888
Q ss_pred c
Q 032168 99 A 99 (146)
Q Consensus 99 ~ 99 (146)
-
T Consensus 75 ~ 75 (325)
T TIGR01526 75 E 75 (325)
T ss_pred C
Confidence 4
No 19
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.66 E-value=1.4e-15 Score=115.11 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=67.9
Q ss_pred EEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEE-EecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC----CeEEecc
Q 032168 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCV-IGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD----FIMVDPW 97 (146)
Q Consensus 23 ~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~v-vp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~----~i~v~~~ 97 (146)
++ |||||||+|+||+.+++.|++.+ |+++| +++..+|.+ ++..+++++|++|+++++++.+ .+.+...
T Consensus 2 ~v-~~G~FdP~H~GHl~~i~~a~~~~--d~l~v~v~s~~~~~~----~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~ 74 (163)
T cd02166 2 AL-FIGRFQPFHLGHLKVIKWILEEV--DELIIGIGSAQESHT----LENPFTAGERVLMIRRALEEEGIDLSRYYIIPV 74 (163)
T ss_pred eE-EeeccCCCCHHHHHHHHHHHHHC--CEEEEEecCCCCCCC----CCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEec
Confidence 45 79999999999999999999997 89887 555555543 4566899999999999998753 5555443
Q ss_pred cccCCCccchHHHHHHHHHHcCCCCeeeeeccchH
Q 032168 98 EANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQ 132 (146)
Q Consensus 98 E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~ 132 (146)
+. ....-.-..++++.-|..++.++|.+...
T Consensus 75 ~d----~~~~~~w~~~v~~~vp~~div~~g~~~~~ 105 (163)
T cd02166 75 PD----IERNSLWVSYVESLTPPFDVVYSGNPLVA 105 (163)
T ss_pred CC----CCchHHHHHHHHHHCCCCCEEEECchHHH
Confidence 21 11112233444555566777555766443
No 20
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.65 E-value=4.4e-16 Score=116.59 Aligned_cols=71 Identities=27% Similarity=0.318 Sum_probs=61.9
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
+++++ |.|||||+|+||+.++++|...+ |+|+|.- ..+|. |+++++.++|++|++.++++.++++|..|+.
T Consensus 2 ~~iav-ypGSFDPiTnGHlDii~RA~~~F--d~viVaV-~~np~-----K~plFsleER~~l~~~~~~~l~nV~V~~f~~ 72 (159)
T COG0669 2 MKIAV-YPGSFDPITNGHLDIIKRASALF--DEVIVAV-AINPS-----KKPLFSLEERVELIREATKHLPNVEVVGFSG 72 (159)
T ss_pred CeeEE-eCCCCCCCccchHHHHHHHHHhc--cEEEEEE-EeCCC-----cCCCcCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 56777 69999999999999999999998 6886643 35665 5899999999999999999999999998875
No 21
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.61 E-value=8.1e-15 Score=111.40 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=65.7
Q ss_pred EEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEE-EecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccC
Q 032168 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCV-IGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQ 101 (146)
Q Consensus 23 ~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~v-vp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~ 101 (146)
++ |||||||+|+||+.+++.|++.+ |+++| +++...+++ ++..+++++|++|++.++++.+...+...-.
T Consensus 2 gl-~~G~FdP~H~GHl~ii~~a~~~~--D~lii~i~s~~~~~k----~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~-- 72 (165)
T TIGR01527 2 GF-YIGRFQPFHLGHLEVIKKIAEEV--DELIIGIGSAQESHT----LENPFTAGERILMITQSLKEVGDLTYYIIPI-- 72 (165)
T ss_pred eE-EEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCCCCCC----CCCCCCHHHHHHHHHHHHhcCCCceEEEEec--
Confidence 45 69999999999999999999996 89888 566544443 4667888999999999999876332222111
Q ss_pred CCccchHHHHHHHHHHcCCCCeeeeeccch
Q 032168 102 SGYQRTLTVLSRVKNFLIEAGLISTGMDHM 131 (146)
Q Consensus 102 ~~~~yT~~tl~~l~~~~p~~~~~liG~D~l 131 (146)
+.....-.=..+++..-|..+.+..|.+..
T Consensus 73 ~d~~~~~~w~~~v~~~~p~~D~vf~~~~~~ 102 (165)
T TIGR01527 73 EDIERNSIWVSYVESMTPPFDVVYSNNPLV 102 (165)
T ss_pred CCccHHHHHHHHHHHhCCCCCEEEECCHHH
Confidence 111111112345555557556555665433
No 22
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.60 E-value=5.9e-15 Score=113.56 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=65.9
Q ss_pred EEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC----CCeEEeccc
Q 032168 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS----DFIMVDPWE 98 (146)
Q Consensus 23 ~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~----~~i~v~~~E 98 (146)
++ |||||||+|+||+.+++.|++.++ +++|+++...+.+ .+++.+++++|++|+++++.+. ..+.+...+
T Consensus 2 ~l-~~GrF~P~H~GHl~~i~~a~~~~~--~vii~i~s~~~~~---~~~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~ 75 (181)
T cd02168 2 LV-YIGRFQPFHNGHLAVVLIALEKAK--KVIILIGSARTAR---NIKNPWTSEEREVMIEAALSDAGADLARVHFRPLR 75 (181)
T ss_pred eE-EeeccCCCCHHHHHHHHHHHHHCC--eEEEEeCCCCCCC---CCCCCcCHHHHHHHHHHHHhccCCCcceEEEEecC
Confidence 44 799999999999999999999974 8888654332222 2457799999999999998774 246666555
Q ss_pred ccC-CCccchHHHHHHHHHHc-CCCCeeeeecc
Q 032168 99 ANQ-SGYQRTLTVLSRVKNFL-IEAGLISTGMD 129 (146)
Q Consensus 99 ~~~-~~~~yT~~tl~~l~~~~-p~~~~~liG~D 129 (146)
... ....+..++-+.....+ ++.++.++|.|
T Consensus 76 D~~~~~~~W~~~v~~~v~~~~~~~~~i~~~g~~ 108 (181)
T cd02168 76 DHLYSDNLWLAEVQQQVLEIAGGSASVGLVGHR 108 (181)
T ss_pred CCCCChHHHHHHHHHhChHhhCCCCcEEEeCCc
Confidence 432 22222323323334333 23355555754
No 23
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.59 E-value=1.4e-14 Score=110.90 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=49.1
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe-cccCCCCcccccCCCCCHHHHHHHHHHHhcCCC
Q 032168 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG-GYMSPVNDAYKKRGLISAEHRINLCNLACKSSD 90 (146)
Q Consensus 22 i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp-~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~ 90 (146)
+++ |||||||+|+||+.++++|++. .|+++|++ +...|.+ +++.+++++|++|++.++++.+
T Consensus 2 ~gl-~~G~F~P~H~GHl~~i~~a~~~--~d~v~v~i~s~~~~~~----~~~p~~~~~R~~mi~~a~~~~~ 64 (174)
T PRK01153 2 RAL-FIGRFQPFHKGHLEVIKWILEE--VDELIIGIGSAQESHT----LKNPFTAGERILMIRKALEEEG 64 (174)
T ss_pred EEE-EeeccCCCCHHHHHHHHHHHHh--CCEEEEEecCCCCCCC----CCCCCCHHHHHHHHHHHHhcCC
Confidence 466 6999999999999999999995 58998854 3333332 4566899999999999997543
No 24
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.59 E-value=1.2e-14 Score=121.35 Aligned_cols=106 Identities=16% Similarity=0.117 Sum_probs=71.1
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC--CCeEEec
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS--DFIMVDP 96 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~--~~i~v~~ 96 (146)
+.++++ |||||||+|+||+.+++.|++.+ |+++|+++...+. +.+++.+++++|++|++.++++. ..+.+-.
T Consensus 5 ~~~~~~-~~G~F~P~H~GHl~~i~~a~~~~--d~l~v~i~s~~~~---~~~~~~~~~~~R~~mi~~~~~~~~~~r~~~~p 78 (340)
T PRK05379 5 RYDYLV-FIGRFQPFHNGHLAVIREALSRA--KKVIVLIGSADLA---RSIKNPFSFEERAQMIRAALAGIDLARVTIRP 78 (340)
T ss_pred cceEEE-EeeccCCCCHHHHHHHHHHHHHC--CEEEEEEccCCCC---CcCCCCCCHHHHHHHHHHHhhcCCCceEEEEE
Confidence 466777 69999999999999999999997 7999998742221 12456799999999999999854 3566655
Q ss_pred ccccC-CCccchHHHHHHHHHH-cCCCCeeeeeccc
Q 032168 97 WEANQ-SGYQRTLTVLSRVKNF-LIEAGLISTGMDH 130 (146)
Q Consensus 97 ~E~~~-~~~~yT~~tl~~l~~~-~p~~~~~liG~D~ 130 (146)
.+... ....+..++-+..++. .|+.++.++|.|.
T Consensus 79 i~d~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~ 114 (340)
T PRK05379 79 LRDSLYNDSLWLAEVQAAVAEHAGADARIGLIGHEK 114 (340)
T ss_pred CCCCCcChHHHHHHHHHHHHhccCCCCcEEEECCcC
Confidence 55432 2222222332223222 2566665668553
No 25
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.56 E-value=9.5e-15 Score=93.82 Aligned_cols=62 Identities=23% Similarity=0.451 Sum_probs=47.2
Q ss_pred EEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec--ccCCCCcccccCCCCCHHHHHHHHHHHhcCCC
Q 032168 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG--YMSPVNDAYKKRGLISAEHRINLCNLACKSSD 90 (146)
Q Consensus 23 ~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~--~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~ 90 (146)
++ +||||||+|.||+.++++|++..+ +.++++++ ..++.+ +....+.++|.+|++.+...++
T Consensus 2 ~~-~~G~Fdp~H~GH~~~l~~a~~~~~-~~vv~i~~~~~~~~~~----~~~~~~~~~R~~~~~~~~~~~~ 65 (66)
T TIGR00125 2 VI-FVGTFDPFHLGHLDLLERAKELFD-ELIVGVGSDQFVNPLK----GEPVFSLEERLEMLKALKYVDE 65 (66)
T ss_pred EE-EcCccCCCCHHHHHHHHHHHHhCC-EEEEEECchHhccccC----CCCCCCHHHHHHHHHHhccccC
Confidence 55 699999999999999999999986 44555544 222322 2378999999999999876543
No 26
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=99.52 E-value=7.8e-14 Score=118.23 Aligned_cols=108 Identities=20% Similarity=0.140 Sum_probs=90.4
Q ss_pred hcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC
Q 032168 11 SLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD 90 (146)
Q Consensus 11 ~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~ 90 (146)
|+.....+=++|+. -=||||+|+||.++++.|++.++.|+++|+|... |++ .+.++++.|++|++.++++.+
T Consensus 175 r~~f~~~gw~~Vva--fqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g-~~k-----~~~~~~~~R~~~~~~~~~~~~ 246 (383)
T TIGR00339 175 REEFKERGWDTVVA--FQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVG-LTK-----PGDIPAEVRMRAYEVLKEGYP 246 (383)
T ss_pred HHHHHHcCCCeEEE--eccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCC-CCC-----CCCCCHHHHHHHHHHHHhhCC
Confidence 44443444467766 4899999999999999999998889999999865 654 588999999999999999876
Q ss_pred C-----eEEecccccCCCccchHHHHHH--HHHHcCCCCeeeeeccc
Q 032168 91 F-----IMVDPWEANQSGYQRTLTVLSR--VKNFLIEAGLISTGMDH 130 (146)
Q Consensus 91 ~-----i~v~~~E~~~~~~~yT~~tl~~--l~~~~p~~~~~liG~D~ 130 (146)
. +.+.++|....+++ ++|.+ +++.|+.. .||+|.|.
T Consensus 247 ~~~~~~l~~~~~em~~agpr---eall~Aiir~nyG~t-h~IiG~Dh 289 (383)
T TIGR00339 247 NPERVMLTFLPLAMRYAGPR---EAIWHAIIRKNYGAT-HFIVGRDH 289 (383)
T ss_pred CCCceEEEecchHhhcCCcH---HHHHHHHHHHHCCCC-EEEECCCC
Confidence 5 88889999888887 99999 99999765 59999886
No 27
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.49 E-value=2.5e-13 Score=115.68 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=64.0
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc----ccCCCCCHHHHHHHHHHHhcCCCCeEE
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY----KKRGLISAEHRINLCNLACKSSDFIMV 94 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~----~k~~~~~~~~R~~Ml~lai~~~~~i~v 94 (146)
+.++++ ++|+|||+|+||+.+++.|++.+ |+++|+.+...|..... +++..++.++|++|++.++++.+++.|
T Consensus 51 ~~~~~v-~~G~FdP~H~GH~~lI~~A~~~~--d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v 127 (399)
T PRK08099 51 MKKIGV-VFGKFYPLHTGHIYLIQRACSQV--DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKI 127 (399)
T ss_pred cCcEEE-EEEecCCCCHHHHHHHHHHHHHC--CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 345777 69999999999999999999996 68988887766543221 235689999999999999999999999
Q ss_pred ecccc
Q 032168 95 DPWEA 99 (146)
Q Consensus 95 ~~~E~ 99 (146)
..++.
T Consensus 128 ~~~~~ 132 (399)
T PRK08099 128 HAFNE 132 (399)
T ss_pred EecCC
Confidence 98776
No 28
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.46 E-value=5.7e-13 Score=100.04 Aligned_cols=64 Identities=19% Similarity=0.108 Sum_probs=47.5
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 032168 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (146)
Q Consensus 21 ~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~ 88 (146)
+.++ +||||||+|.||+.+++.|++.. |+++|+.+.-. .-.++++....|+++|++|++.++++
T Consensus 2 ~~v~-~gGtFDplH~GH~~ll~~A~~~~--d~livgi~~d~-~~~~~K~~~i~~~e~R~~~v~~~~~~ 65 (153)
T PRK00777 2 MKVA-VGGTFDPLHDGHRALLRKAFELG--KRVTIGLTSDE-FAKSYKKHKVRPYEVRLKNLKKFLKA 65 (153)
T ss_pred cEEE-EecccCCCCHHHHHHHHHHHHcC--CEEEEEEcCCc-cccccCCCCCCCHHHHHHHHHHHHHh
Confidence 3566 59999999999999999999884 67877433211 00112235688999999999999876
No 29
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.45 E-value=1.3e-13 Score=113.41 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=60.1
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
++++.+ -|||||+|+||+.++++|++.++.+.|+++|+ ++..+|+++|++|+++++++.+++.|..++.
T Consensus 114 ~~~~~~-~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~----------~~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~ 182 (297)
T cd02169 114 KKIAAI-VMNANPFTLGHRYLVEKAAAENDWVHLFVVSE----------DKSLFSFADRFKLVKKGTKHLKNVTVHSGGD 182 (297)
T ss_pred CceEEE-EecCCCCchHHHHHHHHHHhhCCeEEEEEEcC----------CCCCCCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 577775 89999999999999999999998888877753 2456899999999999999999999888775
No 30
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.41 E-value=1.2e-12 Score=97.32 Aligned_cols=63 Identities=16% Similarity=-0.005 Sum_probs=47.1
Q ss_pred EEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccccc--CCCCCHHHHHHHHHHHhcCC
Q 032168 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK--RGLISAEHRINLCNLACKSS 89 (146)
Q Consensus 23 ~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k--~~~~~~~~R~~Ml~lai~~~ 89 (146)
++ +||||||+|.||..+++.|++..+ ++++++.+.-.+.+. ++ ..+.++++|++|++.++++.
T Consensus 2 v~-~GGtFD~lH~GH~~Ll~~a~~~~~-d~v~vgvt~d~~~~~--k~~~~~i~s~e~R~~~l~~~l~~~ 66 (143)
T cd02164 2 VA-VGGTFDRLHDGHKILLSVAFLLAG-EKLIIGVTSDELLKN--KSLKELIEPYEERIANLHEFLVDL 66 (143)
T ss_pred EE-EcccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeCchhccc--CCCCCCCCCHHHHHHHHHHHHHhc
Confidence 45 599999999999999999999986 677764332221211 11 23679999999999999874
No 31
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.40 E-value=6.3e-13 Score=110.85 Aligned_cols=69 Identities=19% Similarity=0.103 Sum_probs=57.5
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
.++++ +||||||+|+||+.++++|.+.++.+.|+|+ . . ++..+|+++|++|++.++++.+++.|..+..
T Consensus 139 ~~i~~-~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~----~--~----~~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~ 207 (332)
T TIGR00124 139 NKIGS-IVMNANPFTNGHRYLIEQAARQCDWLHLFVV----K--E----DASLFSYDERFALVKQGIQDLSNVTVHNGSA 207 (332)
T ss_pred CcEEE-EEeCcCCCchHHHHHHHHHHHHCCEEEEEEE----e--C----CCCCCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 58888 5999999999999999999999865445443 1 1 4668999999999999999999998876544
No 32
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.39 E-value=1.4e-12 Score=95.14 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=68.6
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
+++++ ++|+|||+|.||+.+++.|.+.. +.++++++.- +.-..+++..+.+.++|.+|++. ++..+.+.+.
T Consensus 1 ~~~v~-~~G~FD~~H~GH~~ll~~a~~~~--~~l~v~v~~~-~~~~~~~~~~~~~~~eR~~~l~~-~~~vd~v~~~---- 71 (136)
T cd02170 1 MKRVY-AAGTFDIIHPGHIRFLEEAKKLG--DYLIVGVARD-ETVAKIKRRPILPEEQRAEVVEA-LKYVDEVILG---- 71 (136)
T ss_pred CeEEE-EcCccCCCCHHHHHHHHHHHHhC--CEEEEEECCc-HHHHhcCCCCCCCHHHHHHHHHc-CCCcCEEEEC----
Confidence 45666 59999999999999999999986 4666665421 11011233478999999999996 5555544432
Q ss_pred cCCCccchHHHHHHHHHHcCCCCeeeeeccchHHH--HHHHH
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF--WCDLY 139 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l--W~~~~ 139 (146)
. +.++++.+.+.+| +.+++|.|..... |.++.
T Consensus 72 -~-----~~~~~~~l~~~~~--~~vv~G~d~~fg~~~~~~~~ 105 (136)
T cd02170 72 -H-----PWSYFKPLEELKP--DVIVLGDDQKNGVDEEEVYE 105 (136)
T ss_pred -C-----CCCHhHHHHHHCC--CEEEECCCCCCCCcchhHHH
Confidence 1 4455566666666 4588999974433 55443
No 33
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.35 E-value=2.7e-12 Score=98.94 Aligned_cols=59 Identities=24% Similarity=0.212 Sum_probs=51.1
Q ss_pred CCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecc
Q 032168 29 SFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPW 97 (146)
Q Consensus 29 SFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~ 97 (146)
+|||+|+||+.+++.|++.++.+.|+|+|+ ++..+++++|++|+++|+++.+++.|..+
T Consensus 7 ~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~----------~~~~~s~e~R~~Mi~~a~~~~~~v~v~~~ 65 (182)
T smart00764 7 NANPFTLGHRYLVEQAAAECDWVHLFVVSE----------DASLFSFDERFALVKKGTKDLDNVTVHSG 65 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHCCceEEEEEeC----------CCCCCCHHHHHHHHHHHhccCCCEEEEec
Confidence 899999999999999999998888888764 23568999999999999999998776543
No 34
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.24 E-value=1.7e-11 Score=85.81 Aligned_cols=56 Identities=14% Similarity=-0.006 Sum_probs=45.3
Q ss_pred EeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHH
Q 032168 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLA 85 (146)
Q Consensus 25 lfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~la 85 (146)
++||||||+|.||+.+++.|.+.. |++++.++..++.+ .+....+.++|+++++..
T Consensus 3 ~~~G~Fdp~H~GH~~l~~~a~~~~--d~~i~~i~~~~~~~---~~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 3 RFPGEPGYLHIGHAKLICRAKGIA--DQCVVRIDDNPPVK---VWQDPHELEERKESIEED 58 (105)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHhC--CcEEEEEcCCCccc---ccCChHHHHHHHHHHHHH
Confidence 369999999999999999999987 67888766544433 133578899999999986
No 35
>PRK13671 hypothetical protein; Provisional
Probab=99.12 E-value=1.5e-10 Score=95.28 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=50.5
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHH
Q 032168 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLA 85 (146)
Q Consensus 21 ~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~la 85 (146)
-+|++ -+|||+|+||+.+++.|++.++.|.|+++|+...|.+ .+...++..+|.+|++..
T Consensus 2 ~~GII--aeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~~qr---g~pa~~~~~~R~~ma~~~ 61 (298)
T PRK13671 2 AIGII--AEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYTQR---GEIAVASFEKRKKIALKY 61 (298)
T ss_pred ceeEE--eeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCCCCC---CCCCCCCHHHHHHHHHHc
Confidence 35554 6999999999999999999999999999998877665 134566999999999885
No 36
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.11 E-value=4.7e-10 Score=84.02 Aligned_cols=109 Identities=18% Similarity=0.165 Sum_probs=66.2
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeccccc
Q 032168 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (146)
Q Consensus 21 ~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~ 100 (146)
+.++ .+|||||+|.||+.++++|++..+-|.++|. ..-...-..++.+.+.+.++|.+|++. ++-.+.+.+.
T Consensus 3 ~rV~-~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVg-V~sD~~~~~~k~~pi~~~~eR~~~l~~-~~~Vd~Vi~~----- 74 (150)
T cd02174 3 VRVY-VDGCFDLFHYGHANALRQAKKLGPNDYLIVG-VHSDEEIHKHKGPPVMTEEERYEAVRH-CKWVDEVVEG----- 74 (150)
T ss_pred eEEE-EeCccCCCCHHHHHHHHHHHHhCCCCEEEEE-EecCHHHhhcCCCCcCCHHHHHHHHHh-cCCCCeEEEC-----
Confidence 3455 5999999999999999999988632455443 111110011333488999999999996 4555555442
Q ss_pred CCCccchHHHHHHHHHHcCCCCeeeeeccchHHH-HHHHHHHHh
Q 032168 101 QSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF-WCDLYTQRR 143 (146)
Q Consensus 101 ~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l-W~~~~~~~~ 143 (146)
.....+.+.++.++ .++++.|.|...+. +.++.+.++
T Consensus 75 -~~~~~~~~~i~~~~-----~d~vv~G~d~~~~~~~~~~~~~~~ 112 (150)
T cd02174 75 -APYVTTPEFLDKYK-----CDYVAHGDDIYLDADGEDCYQEVK 112 (150)
T ss_pred -CCCCChHHHHHHhC-----CCEEEECCCCCCCCCchhHHHHHH
Confidence 22345666665443 34577898843222 344444443
No 37
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.10 E-value=7.7e-10 Score=86.26 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=49.1
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC
Q 032168 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS 89 (146)
Q Consensus 21 ~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~ 89 (146)
.+++ |.|.|+|+|+||+.+++.|++.+ |+++|+-|.-.. +...++.+++.+|..|++.++.+.
T Consensus 5 d~~v-~iGRFQPfH~GHl~~I~~al~~~--devII~IGSA~~---s~t~~NPFTa~ER~~MI~~aL~e~ 67 (196)
T PRK13793 5 DYLV-FIGRFQPFHLAHMQTIEIALQQS--RYVILALGSAQM---ERNIKNPFLAIEREQMILSNFSLD 67 (196)
T ss_pred eEEE-EEecCCCCcHHHHHHHHHHHHhC--CEEEEEEccCCC---CCCCCCCCCHHHHHHHHHHhcchh
Confidence 4556 69999999999999999999997 587665443222 223567899999999999999653
No 38
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.08 E-value=4.8e-10 Score=81.00 Aligned_cols=94 Identities=19% Similarity=0.305 Sum_probs=57.9
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
|++++ ++|+|||+|.||..++++|.+.. +++.++... .+......++.+.|.++|+++++.. ...+.+ +
T Consensus 1 ~~~v~-~~G~FDgvH~GH~~ll~~a~~~~--~~l~v~v~~-d~~~~~~~~~~~~~~~~R~~~l~~~-~~vd~v-~----- 69 (129)
T cd02171 1 MKVVI-TYGTFDLLHIGHLNLLERAKALG--DKLIVAVST-DEFNAGKGKKAVIPYEQRAEILESI-RYVDLV-I----- 69 (129)
T ss_pred CcEEE-EeeeeccCCHHHHHHHHHHHHhC--CEEEEEEec-cHhHHhcCCCCCCCHHHHHHHHHcC-CccCEE-e-----
Confidence 45666 59999999999999999999886 455554332 1221111234688999999998763 222222 1
Q ss_pred cCCCccchHHHHHHHHHHcCCCCeeeeecc
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGLISTGMD 129 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~~liG~D 129 (146)
....+...++.+ + .+ +.+.+++|.|
T Consensus 70 ~~~~~~~f~~~~---~-~l-~~~~vv~G~d 94 (129)
T cd02171 70 PETNWEQKIEDI---K-KY-NVDVFVMGDD 94 (129)
T ss_pred cCCCccChHHHH---H-Hh-CCCEEEECCC
Confidence 112333445544 2 22 2345788999
No 39
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.04 E-value=1.2e-09 Score=82.01 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=61.0
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCC-Cccccc--CCCCCHHHHHHHHHHHhcCCCCeEEec
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPV-NDAYKK--RGLISAEHRINLCNLACKSSDFIMVDP 96 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~-~~~~~k--~~~~~~~~R~~Ml~lai~~~~~i~v~~ 96 (146)
+++++ +.|||||+|.||+.++++|++.. |.++|. . .+-. -..++. .++.+.++|++|+ .+++..+.+.+..
T Consensus 2 ~~iv~-~~G~FD~~H~GHi~~L~~A~~lg--d~liVg-V-~~D~~~~~~K~~~~pi~~~~eR~~~v-~~~~~Vd~V~v~~ 75 (152)
T cd02173 2 DKVVY-VDGAFDLFHIGHIEFLEKARELG--DYLIVG-V-HDDQTVNEYKGSNYPIMNLHERVLSV-LACRYVDEVVIGA 75 (152)
T ss_pred CeEEE-EcCcccCCCHHHHHHHHHHHHcC--CEEEEE-E-eCcHHHHhhcCCCCCCCCHHHHHHHH-HhcCCCCEEEECC
Confidence 35666 59999999999999999999874 455443 1 1110 011221 3689999999999 6688877776642
Q ss_pred ccccCCCccchHHHHHHHHHHcCCCCeeeeeccch
Q 032168 97 WEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHM 131 (146)
Q Consensus 97 ~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l 131 (146)
.+ ..+.+.++.++ .++++.|.|..
T Consensus 76 ~~------~~~~~~~~~~~-----~d~vv~G~d~~ 99 (152)
T cd02173 76 PY------VITKELIEHFK-----IDVVVHGKTEE 99 (152)
T ss_pred CC------cchHHHHHHhC-----CCEEEECCCCc
Confidence 21 23444444332 24467787754
No 40
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.01 E-value=3.5e-09 Score=90.73 Aligned_cols=114 Identities=19% Similarity=0.133 Sum_probs=69.2
Q ss_pred CCCCChhhhhcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCC-CCcccccCCCCCHHHHHH
Q 032168 2 DVPLPLEKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSP-VNDAYKKRGLISAEHRIN 80 (146)
Q Consensus 2 ~~~~~~~~~~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p-~~~~~~k~~~~~~~~R~~ 80 (146)
.+.||...+...- ++.+...++ .+|+|||+|.||+.++++|++.. |.++|. . .+- .-..++...+.+.++|++
T Consensus 36 ~~~~~~~~~~~~~-~~~~~~rV~-~~G~FDllH~GH~~~L~qAk~lG--d~LIVG-V-~SDe~i~~~Kg~PV~~~eER~~ 109 (418)
T PLN02406 36 PYAWPDLGIFKKK-KKKKPVRVY-MDGCFDMMHYGHANALRQARALG--DELVVG-V-VSDEEIIANKGPPVTPMHERMI 109 (418)
T ss_pred cccchhhhhhccc-cCCCceEEE-EcCeeCCCCHHHHHHHHHHHHhC--CEEEEE-E-ecChhhhccCCCCcCCHHHHHH
Confidence 4566666665222 233333344 69999999999999999999975 445432 2 111 001233457899999999
Q ss_pred HHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeecc
Q 032168 81 LCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMD 129 (146)
Q Consensus 81 Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D 129 (146)
|++. ++-.+.+.+. .....+.+++..+-+++ +.++++.|.|
T Consensus 110 ~v~a-lk~VD~Vv~~------apy~~~~d~~~~li~~~-~~D~vVhGdD 150 (418)
T PLN02406 110 MVSG-VKWVDEVIPD------APYAITEEFMNKLFNEY-NIDYIIHGDD 150 (418)
T ss_pred HHHh-cCCCceEEeC------CccccchHHHHHHHHHh-CCCEEEECCC
Confidence 9987 6655554442 12234555665443344 3344677887
No 41
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.91 E-value=2.7e-09 Score=81.56 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=51.6
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~ 88 (146)
+++.++ +-|.|.|+|.||+.+++.|+++. |+++|+-|+- ..++..++..++.+|+.|++.++++
T Consensus 2 ~~~rgv-~~GRFqP~H~GHl~vi~~al~~v--DeliI~iGSa---~~~~t~~nPfTagER~~mi~~~L~~ 65 (172)
T COG1056 2 RMKRGV-YFGRFQPLHTGHLYVIKRALSKV--DELIIVIGSA---QESHTLKNPFTAGERIPMIRDRLRE 65 (172)
T ss_pred CceEEE-EEeccCCccHhHHHHHHHHHHhC--CEEEEEEccC---cccccccCCCCccchhHHHHHHHHh
Confidence 466777 58999999999999999999995 7987765542 2333456778999999999999984
No 42
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=98.80 E-value=3.4e-08 Score=75.52 Aligned_cols=97 Identities=16% Similarity=0.262 Sum_probs=58.9
Q ss_pred eCCCCchhhHHHHHHHHHHHHhhC---CCcEEEEecccCCCCcc----cc-cCCCCCHHHHHHHHHHHhcCCCCeEEecc
Q 032168 26 ATGSFNPPTFMHLRMFELARDTLN---SEGYCVIGGYMSPVNDA----YK-KRGLISAEHRINLCNLACKSSDFIMVDPW 97 (146)
Q Consensus 26 fGGSFnP~H~GHl~l~~~a~~~~~---~d~v~vvp~~~~p~~~~----~~-k~~~~~~~~R~~Ml~lai~~~~~i~v~~~ 97 (146)
.-|+|||+|.||..+++.|.+..+ ++.+.+. +.|+... .+ ...+.+.++|++|++.. . .+.+.+.+|
T Consensus 4 ~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~---f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l-~-vd~v~~~~f 78 (180)
T cd02064 4 AIGNFDGVHLGHQALIKTLKKIARERGLPSAVLT---FDPHPREVFLPDKAPPRLTTLEEKLELLESL-G-VDYLLVLPF 78 (180)
T ss_pred EEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEE---ECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc-C-CCEEEEeCC
Confidence 479999999999999999999863 3344443 2332210 11 24578999999999983 3 566666665
Q ss_pred cccCCCccchHHHHHHHHHHcCCCCeeeeecc
Q 032168 98 EANQSGYQRTLTVLSRVKNFLIEAGLISTGMD 129 (146)
Q Consensus 98 E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D 129 (146)
+.+-..-+ .-+-++.+.... +.+.+++|.|
T Consensus 79 ~~~~~~~s-~~~Fi~~il~~~-~~~~ivvG~D 108 (180)
T cd02064 79 DKEFASLS-AEEFVEDLLVKL-NAKHVVVGFD 108 (180)
T ss_pred CHHHHcCC-HHHHHHHHHhhc-CCeEEEEccC
Confidence 43221111 112333333333 4444888988
No 43
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=98.73 E-value=6.8e-08 Score=81.38 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=60.3
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec---ccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEec
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG---YMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDP 96 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~---~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~ 96 (146)
.++++ +.|+|||+|.||+.++++|++.. |.++|.-. ..+..+. ...++.+.++|++++. +++..+.+.+..
T Consensus 192 ~kiv~-~~G~FDl~H~GHi~~L~~A~~lg--d~LIVgV~sD~~v~~~Kg--~~~Pi~~~~eR~~~v~-a~~~Vd~Vvi~~ 265 (353)
T PTZ00308 192 DRIVY-VDGSFDLFHIGHIRVLQKARELG--DYLIVGVHEDQVVNEQKG--SNYPIMNLNERVLGVL-SCRYVDEVVIGA 265 (353)
T ss_pred CeEEE-ECCccCCCCHHHHHHHHHHHHhC--CEEEEEEcchHHhHhhcC--CCCCCCCHHHHHHHHH-hhCCCCeEEEcC
Confidence 46666 69999999999999999999875 45544311 0111110 0136899999999995 788877776642
Q ss_pred ccccCCCccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 97 WEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 97 ~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
. ...+.+.++.++ .++++-|.|.
T Consensus 266 ~------~~~~~~~i~~~~-----~d~vv~G~d~ 288 (353)
T PTZ00308 266 P------FDVTKEVIDSLH-----INVVVGGKFS 288 (353)
T ss_pred C------CCChHHHHHHhC-----CCEEEECCCC
Confidence 2 234555554442 2345667764
No 44
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.32 E-value=1.2e-06 Score=65.76 Aligned_cols=63 Identities=21% Similarity=0.120 Sum_probs=47.5
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc----cCCCCCHHHHHHHHHHHhcC
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK----KRGLISAEHRINLCNLACKS 88 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~----k~~~~~~~~R~~Ml~lai~~ 88 (146)
.|.+++++ |||||+.|.||-.|++.|.+..+ ++.+. -++|.+. +..+.|++.|++-++..+..
T Consensus 3 ~kfm~vav-GGTFd~LH~GHk~LL~~A~~~G~--~v~IG-----lTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~ 69 (158)
T COG1019 3 IKFMKVAV-GGTFDRLHDGHKKLLEVAFEIGD--RVTIG-----LTSDELAKKKKKEKIEPYEVRLRNLRNFLES 69 (158)
T ss_pred ccceEEEe-cccchhhhhhHHHHHHHHHHhCC--eEEEE-----EccHHHHHHhccccCCcHHHHHHHHHHHHHH
Confidence 45566775 99999999999999999999763 44332 1445443 34689999999999887765
No 45
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=98.29 E-value=1.8e-06 Score=71.99 Aligned_cols=58 Identities=21% Similarity=0.127 Sum_probs=42.2
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcc----cccCCCCCHHHHHHHHHHHhcC
Q 032168 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDA----YKKRGLISAEHRINLCNLACKS 88 (146)
Q Consensus 22 i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~----~~k~~~~~~~~R~~Ml~lai~~ 88 (146)
++++ |||||..|.||..+++.|.+.. |.++|.- +.|. +++.. .|+++|+++++..++.
T Consensus 2 ~V~v-gGTFD~lH~GH~~lL~~A~~~g--d~LiVgv-----t~D~~~~~~k~~~-~~~e~R~~~v~~fl~~ 63 (322)
T PRK01170 2 ITVV-GGTFSKLHKGHKALLKKAIETG--DEVVIGL-----TSDEYVRKNKVYP-IPYEDRKRKLENFIKK 63 (322)
T ss_pred EEEE-ccccccCChHHHHHHHHHHHcC--CEEEEEE-----ccHHHHHhcCCCC-CCHHHHHHHHHHHHHh
Confidence 4664 9999999999999999998753 4554431 1222 12224 9999999999998854
No 46
>PLN02388 phosphopantetheine adenylyltransferase
Probab=98.25 E-value=3.1e-06 Score=65.14 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=45.8
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCC--cccc-cCCCCCHHHHHHHHHHHhcCC
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVN--DAYK-KRGLISAEHRINLCNLACKSS 89 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~--~~~~-k~~~~~~~~R~~Ml~lai~~~ 89 (146)
..+.+++ ||+||.+|.||..+++.|.+... +.+ +++ +.+.. .+.+ ...+.+.++|.++++..+...
T Consensus 18 ~~~~Vv~-gGtFDgLH~GHq~LL~~A~~~a~-~~v-vIg--ft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~ 86 (177)
T PLN02388 18 SYGAVVL-GGTFDRLHDGHRLFLKAAAELAR-DRI-VIG--VCDGPMLSKKQFAELIQPIEERMHNVEEYIKSI 86 (177)
T ss_pred cCCeEEE-EecCCccCHHHHHHHHHHHHhhh-cCE-EEe--cCCChhhcccCCCcccCCHHHHHHHHHHHHHHc
Confidence 3566774 99999999999999999998763 233 232 22221 1111 124789999999999999864
No 47
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=98.19 E-value=5.6e-06 Score=61.36 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=41.0
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCC--cccccCCCCCHHHHHHHHHH
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVN--DAYKKRGLISAEHRINLCNL 84 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~--~~~~k~~~~~~~~R~~Ml~l 84 (146)
+++++ .-|+||++|.||.++++.|.+... .+.+. +.|.. .+.+.+.+.+.++|.++++.
T Consensus 4 ~~~vv-~~G~FDgvH~GH~~ll~~a~~~~~--~~vv~---~~~d~~~~~~~~~~i~~~~eR~~~l~~ 64 (144)
T cd02172 4 KTVVL-CHGVFDLLHPGHVRHLQAARSLGD--ILVVS---LTSDRYVNKGPGRPIFPEDLRAEVLAA 64 (144)
T ss_pred CEEEE-EecccCCCCHHHHHHHHHHHHhCC--eEEEE---EeChHHhccCCCCCCCCHHHHHHHHHc
Confidence 45666 589999999999999999999863 43332 22221 01112468899999999855
No 48
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=98.19 E-value=3.1e-06 Score=60.97 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=38.4
Q ss_pred eCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHH
Q 032168 26 ATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNL 84 (146)
Q Consensus 26 fGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~l 84 (146)
..|+||++|.||.+++++|.+.. +.+.+.-+ ..|....+++..+.+.++|.++++.
T Consensus 3 ~~G~FDg~H~GH~~~l~~a~~~~--~~~iv~v~-~d~~~~~~~~~~i~~~eeR~~~l~~ 58 (125)
T TIGR01518 3 TYGTFDLLHWGHINLLERAKQLG--DYLIVALS-TDEFNLQKQKKAYHSYEHRKLILET 58 (125)
T ss_pred EcceeCCCCHHHHHHHHHHHHcC--CEEEEEEe-chHHHhhcCCCCCCCHHHHHHHHHc
Confidence 47999999999999999999875 34433211 1222212234567899999888765
No 49
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=98.03 E-value=7.4e-06 Score=60.80 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=42.8
Q ss_pred EEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcc---cccCCCCCHHHHHHHHHH
Q 032168 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDA---YKKRGLISAEHRINLCNL 84 (146)
Q Consensus 23 ~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~---~~k~~~~~~~~R~~Ml~l 84 (146)
++ .+|+||=.|.||++.+++|++.. |+++|+.+ +.... -+++...+.++|+++++.
T Consensus 4 V~-~~GtFDilH~GHi~~L~~Ak~lG--d~liVv~a---~de~~~~~~k~~pi~~~~qR~evl~s 62 (140)
T COG0615 4 VW-ADGTFDILHPGHIEFLRQAKKLG--DELIVVVA---RDETVIKRKKRKPIMPEEQRAEVLES 62 (140)
T ss_pred EE-EeeEEEEechhHHHHHHHHHHhC--CeEEEEEe---ccHHHHHhcCCCCCCCHHHHHHHHHc
Confidence 55 49999999999999999999986 67776633 32211 134578999999999765
No 50
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=97.96 E-value=2.1e-05 Score=60.52 Aligned_cols=57 Identities=21% Similarity=0.190 Sum_probs=46.4
Q ss_pred CCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEe
Q 032168 29 SFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVD 95 (146)
Q Consensus 29 SFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~ 95 (146)
.-||.|+||..|+++|.+.. |.+.+.- + .. .+..+|+++|.+|++.-+++.+++.|-
T Consensus 7 NaNPFT~GH~yLiE~Aa~~~--d~l~vFV--V--~e----D~S~Fpf~~R~~LVk~G~~~L~NV~V~ 63 (182)
T PF08218_consen 7 NANPFTLGHRYLIEQAAKEC--DWLHVFV--V--SE----DRSLFPFADRYELVKEGTADLPNVTVH 63 (182)
T ss_pred cCCCCccHHHHHHHHHHHhC--CEEEEEE--E--cc----ccCcCCHHHHHHHHHHHhCcCCCEEEE
Confidence 46999999999999999997 5654321 1 11 367899999999999999999998776
No 51
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=97.92 E-value=1.9e-05 Score=58.46 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=45.7
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccccc--CCCCCHHHHHHHHHHHhcCCCCeEE
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK--RGLISAEHRINLCNLACKSSDFIMV 94 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k--~~~~~~~~R~~Ml~lai~~~~~i~v 94 (146)
+++++ ..|+||-+|.||.++++.|.+..+ .+.++- ...|+...+++ ..+.+.++|.++++. ++..+.+.+
T Consensus 11 ~~~v~-~~G~FDgvH~GH~~ll~~a~~~~~--~~~v~v-~~d~~~~~~k~~~~~l~~~eeR~~~l~~-~~~VD~vi~ 82 (144)
T TIGR02199 11 KKIVF-TNGCFDILHAGHVSYLQQARALGD--RLVVGV-NSDASVKRLKGETRPINPEEDRAEVLAA-LSSVDYVVI 82 (144)
T ss_pred CCEEE-EeCcccccCHHHHHHHHHHHHhCC--ccEEEE-ECCcCHHHhCCCCCCcCCHHHHHHHHHh-cCCCCEEEE
Confidence 56666 499999999999999999998864 333321 12232111222 358899999999887 433334433
No 52
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=97.88 E-value=6.3e-05 Score=63.54 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=41.4
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCc--ccccCCCCCHHHHHHHHHH
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVND--AYKKRGLISAEHRINLCNL 84 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~--~~~k~~~~~~~~R~~Ml~l 84 (146)
+++++ ..|+||-+|.||..++++|++.. +.+.|-+ .|... .++...+.+.++|+++++.
T Consensus 11 ~~~v~-~~G~FD~vH~GH~~~L~qAk~~g--~~Livgv---~~d~~i~~~K~~pi~~~eeR~~~l~~ 71 (353)
T PTZ00308 11 TIRVW-VDGCFDMLHFGHANALRQARALG--DELFVGC---HSDEEIMRNKGPPVMHQEERYEALRA 71 (353)
T ss_pred cEEEE-EEeecccCCHHHHHHHHHHHHhC--CEEEEEe---CCHHHHhhcCCCCCCCHHHHHHHHHh
Confidence 35555 59999999999999999999986 3454432 22110 1123368999999999876
No 53
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=97.73 E-value=0.00041 Score=54.94 Aligned_cols=113 Identities=18% Similarity=0.136 Sum_probs=72.8
Q ss_pred hhhcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 032168 9 KLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (146)
Q Consensus 9 ~~~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~ 88 (146)
.+++.++..+-++|+.+ - |-||+|.||..+.+.|++.+ .|.+.+.|. +.+. |.+-++.+-|++-.+..+++
T Consensus 10 e~r~~~~~~gw~~Vvaf-q-trnPlHraHe~l~~~a~e~~-~~~lll~pl-vG~~-----k~~d~~~~~r~~~~~~~~~~ 80 (215)
T PF01747_consen 10 ETRELFKEKGWRRVVAF-Q-TRNPLHRAHEYLMRRALEKA-GDGLLLHPL-VGPT-----KPGDIPYEVRVRCYEALIDN 80 (215)
T ss_dssp HHHHHHHHTT-SSEEEE-E-ESS---HHHHHHHHHHHHHH-TSEEEEEEB-ESB------STTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEE-E-eCCCCCHHHHHHHHHHHHHh-cCcEEEEec-cCCC-----CcCCCCHHHHHHHHHHHHHH
Confidence 34555556666788885 3 39999999999999999998 467877764 3332 56789999999999999988
Q ss_pred C---CCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 89 S---DFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 89 ~---~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
. +.+.++.+....---...=..+..+-.++-++.-||+|-|.
T Consensus 81 y~p~~~v~l~~lp~~mr~aGPrEallhAiirkN~GcTh~IvGrdh 125 (215)
T PF01747_consen 81 YFPKNRVLLSPLPLPMRYAGPREALLHAIIRKNYGCTHFIVGRDH 125 (215)
T ss_dssp CSSTTGEEEEBBESB---SHHHHHHHHHHHHHHTT-SEEEE-TTT
T ss_pred hCCCCcEEEeccCchhcccCcHHHHHHHHHHHHCCCceEEeCCcC
Confidence 3 45777666554322222333555555555577669998874
No 54
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=97.68 E-value=6.1e-05 Score=56.72 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=52.1
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcE-EEEecccCCCCccc-----ccCCCCCHHHHHHHHHHHhcCCCCe
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGY-CVIGGYMSPVNDAY-----KKRGLISAEHRINLCNLACKSSDFI 92 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v-~vvp~~~~p~~~~~-----~k~~~~~~~~R~~Ml~lai~~~~~i 92 (146)
.++.++ .=|+||=+|.||..+++.|.+.....+. .++-+ +.|+.... ....+.+.++|+++++.. ..+.+
T Consensus 4 ~~~~~v-~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~t-F~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~--Gvd~~ 79 (157)
T PF06574_consen 4 NKKSVV-AIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLT-FDPHPKEVLNPDKPPKLLTSLEEKLELLESL--GVDYV 79 (157)
T ss_dssp -S-EEE-EES--TT--HHHHHHHHHHHHHHHHCT-EEEEEE-ESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT--TESEE
T ss_pred CCCcEE-EEeCCCCccHHHHHHHHHHhhhhhhcccceEEEE-cccCHHHHhcCCCcccCCCCHHHHHHHHHHc--CCCEE
Confidence 344455 3799999999999999999988743332 22222 34432111 113489999999998873 22344
Q ss_pred EEecccccCCCccchHHHHHH-HHHHcCCCCeeeeecc
Q 032168 93 MVDPWEANQSGYQRTLTVLSR-VKNFLIEAGLISTGMD 129 (146)
Q Consensus 93 ~v~~~E~~~~~~~yT~~tl~~-l~~~~p~~~~~liG~D 129 (146)
.+-+|+.+-.. .-.-+-++. |++.. +.+-+++|.|
T Consensus 80 ~~~~F~~~~~~-ls~~~Fi~~iL~~~l-~~~~ivvG~D 115 (157)
T PF06574_consen 80 IVIPFTEEFAN-LSPEDFIEKILKEKL-NVKHIVVGED 115 (157)
T ss_dssp EEE-CCCHHCC-S-HHHHHHHHCCCHC-TEEEEEEETT
T ss_pred EEecchHHHHc-CCHHHHHHHHHHhcC-CccEEEEccC
Confidence 45555533111 112233333 22222 2222788888
No 55
>PLN02413 choline-phosphate cytidylyltransferase
Probab=97.68 E-value=0.00026 Score=58.18 Aligned_cols=73 Identities=21% Similarity=0.317 Sum_probs=46.7
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCe
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFI 92 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i 92 (146)
..+++.++.-|+||=.|.||+..+++|++..+-+.+ ||+..--..-..++...+.+.++|.++++. ++-.+.+
T Consensus 24 ~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~L-IVGV~sDe~v~~~KGrPIm~~~ER~e~V~a-cKyVDeV 96 (294)
T PLN02413 24 SDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYL-LVGCCNDELTHKYKGKTVMTEDERYESLRH-CKWVDEV 96 (294)
T ss_pred CCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEE-EEEecccHHHHhcCCCCCCCHHHHHHHHHh-cccccEE
Confidence 334444446999999999999999999998643333 333211111112334578999999999875 4444443
No 56
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=97.53 E-value=0.00039 Score=57.21 Aligned_cols=97 Identities=12% Similarity=0.231 Sum_probs=54.4
Q ss_pred eCCCCchhhHHHHHHHHHHHHhhC---CCcEEEEecccCCCCccc----ccCCCCCHHHHHHHHHHHhcCCCCeEEeccc
Q 032168 26 ATGSFNPPTFMHLRMFELARDTLN---SEGYCVIGGYMSPVNDAY----KKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (146)
Q Consensus 26 fGGSFnP~H~GHl~l~~~a~~~~~---~d~v~vvp~~~~p~~~~~----~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E 98 (146)
.-|+||.+|.||..+++.|.+... +..+.+. +.|+.... ....+.+.++|+++++.. ..+.+.+-+|.
T Consensus 3 aiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~t---F~phP~~~~~~~~~~~l~~~~~k~~~l~~~--Gvd~~~~~~F~ 77 (288)
T TIGR00083 3 AIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLL---FEPHPSEQFNWLTAPALTPLEDKARQLQIK--GVEQLLVVVFD 77 (288)
T ss_pred EEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEE---eCCChHHHhCccCCCCCCCHHHHHHHHHHc--CCCEEEEeCCC
Confidence 369999999999999999987653 2333332 33432111 011278899999998773 34555566664
Q ss_pred ccCCCccchHHHHHH-HHHHcCCCCeeeeecc
Q 032168 99 ANQSGYQRTLTVLSR-VKNFLIEAGLISTGMD 129 (146)
Q Consensus 99 ~~~~~~~yT~~tl~~-l~~~~p~~~~~liG~D 129 (146)
.+-...+. -+-++. +.+.. +.+-+++|.|
T Consensus 78 ~~~a~ls~-e~Fi~~~l~~~l-~~~~ivvG~D 107 (288)
T TIGR00083 78 EEFANLSA-LQFIDQLIVKHL-HVKFLVVGDD 107 (288)
T ss_pred HHHHcCCH-HHHHHHHHHhcc-CCcEEEECCC
Confidence 33222211 112222 22222 3333778887
No 57
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=97.50 E-value=0.00051 Score=59.20 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=46.7
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccccc--CCCCCHHHHHHHHHHHhcCCCCe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK--RGLISAEHRINLCNLACKSSDFI 92 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k--~~~~~~~~R~~Ml~lai~~~~~i 92 (146)
.++++ ..|+||..|.||+++++.|++..+ .+.+.-+ ..+.-..+++ ..+.+.++|.+++ .+++..+++
T Consensus 340 ~~iv~-~~G~fD~~H~GH~~~l~~a~~~~~--~l~v~v~-~d~~~~~~k~~~~pi~~~~~R~~~~-~~~~~vd~v 409 (473)
T PRK11316 340 EKIVM-TNGCFDILHAGHVSYLANARKLGD--RLIVAVN-SDASVKRLKGEGRPVNPLEQRMAVL-AALEAVDWV 409 (473)
T ss_pred CeEEE-EecccccCCHHHHHHHHHHHHhCC--eeEEEEe-CchhHHHhCCCCCCCCCHHHHHHHH-HhcCcCCEE
Confidence 57776 599999999999999999999863 4444322 1221111222 3589999999998 346666665
No 58
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=97.47 E-value=0.0025 Score=53.93 Aligned_cols=110 Identities=17% Similarity=0.085 Sum_probs=73.9
Q ss_pred hcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC
Q 032168 11 SLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD 90 (146)
Q Consensus 11 ~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~ 90 (146)
|...+..+-++|+. -=|-||+|.||..+++.|++.++-+.+.+.|- +.+ .|.+-++.+-|++-.+.++++..
T Consensus 148 R~~f~~~gw~~Vva--fqtrnP~HraHe~l~~~a~~~~~~~~lll~pl-vG~-----~k~~d~~~~~r~~~~~~l~~~y~ 219 (353)
T cd00517 148 RALFKERGWRRVVA--FQTRNPMHRAHEELMKRAAEKLLNDGLLLHPL-VGW-----TKPGDVPDEVRMRAYEALLEEYY 219 (353)
T ss_pred HHHHHHcCCCeEEE--eecCCCCchhhHHHHHHHHHHcCCCcEEEEec-cCC-----CCCCCCCHHHHHHHHHHHHHhCC
Confidence 44444444457666 37899999999999999999875456666553 222 25678999999999999998854
Q ss_pred ---CeEEeccccc--CCCccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 91 ---FIMVDPWEAN--QSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 91 ---~i~v~~~E~~--~~~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
.+.+..+... -.+| .=..+..+-.+.-++.-||+|-|.
T Consensus 220 ~~~~~~l~~lp~~mryAGP--rEallhAiirkN~GcThfIvGrDH 262 (353)
T cd00517 220 LPERTVLAILPLPMRYAGP--REALWHAIIRKNYGATHFIVGRDH 262 (353)
T ss_pred CCCcEEEEeccchhcccCc--HHHHHHHHHHHhCCCCeEEECCCC
Confidence 4555555443 2333 223444444555567669998773
No 59
>PRK13670 hypothetical protein; Provisional
Probab=97.45 E-value=0.001 Score=56.89 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=59.0
Q ss_pred CCCchhhHHHHHHHHHHHHhhCCCc-EEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccCCCccc
Q 032168 28 GSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQR 106 (146)
Q Consensus 28 GSFnP~H~GHl~l~~~a~~~~~~d~-v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~y 106 (146)
--|||+|+||..++++|++..+.+- +.|+|+.+---. ...+.+..+|.+|+... +.+.+..-.|..-...+..
T Consensus 8 aEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qrg----~p~i~~~~~R~~~a~~~--GvD~vielpf~~a~~sae~ 81 (388)
T PRK13670 8 VEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRG----EPAIVDKWTRAKMALEN--GVDLVVELPFLYSVQSADF 81 (388)
T ss_pred eeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCCC----CCCCCCHHHHHHHHHHc--CCCEEEEeCCchHhCCHHH
Confidence 6899999999999999999886543 456766432111 12389999999987663 2333433344322222222
Q ss_pred hH-HHHHHHHHHcCCCCeeeeecc--chHHH
Q 032168 107 TL-TVLSRVKNFLIEAGLISTGMD--HMQKF 134 (146)
Q Consensus 107 T~-~tl~~l~~~~p~~~~~liG~D--~l~~l 134 (146)
.+ .-++-| +... .+.+++|+| ++..|
T Consensus 82 F~~~aV~iL-~~l~-v~~lv~G~e~g~~~~L 110 (388)
T PRK13670 82 FAEGAVSIL-DALG-VDSLVFGSESGDIEDF 110 (388)
T ss_pred HHHhHHHHH-HHcC-CCEEEEcCCCCCHHHH
Confidence 22 222334 3333 555889999 44444
No 60
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=97.44 E-value=0.00081 Score=55.76 Aligned_cols=102 Identities=19% Similarity=0.281 Sum_probs=58.1
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHHHhhCCCcE-EEEecccCCCCccc-----ccCCCCCHHHHHHHHHHHhcCCCCeEEe
Q 032168 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGY-CVIGGYMSPVNDAY-----KKRGLISAEHRINLCNLACKSSDFIMVD 95 (146)
Q Consensus 22 i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v-~vvp~~~~p~~~~~-----~k~~~~~~~~R~~Ml~lai~~~~~i~v~ 95 (146)
.++ .-|+||-+|.||..+++.|.+..+...+ .++-+ +.|+.... ....+.+.++|+++++.. . .+.+.+-
T Consensus 15 ~vv-~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vit-Fd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~-g-VD~~~~~ 90 (305)
T PRK05627 15 CVL-TIGNFDGVHRGHQALLARAREIARERGLPSVVMT-FEPHPREVFAPDKAPARLTPLRDKAELLAEL-G-VDYVLVL 90 (305)
T ss_pred EEE-EEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEE-ecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc-C-CCEEEEe
Confidence 344 4799999999999999999987643222 11211 33432111 123588999999998764 3 5655555
Q ss_pred cccccCCCccchH-HHHHH-HHHHcCCCCeeeeeccc
Q 032168 96 PWEANQSGYQRTL-TVLSR-VKNFLIEAGLISTGMDH 130 (146)
Q Consensus 96 ~~E~~~~~~~yT~-~tl~~-l~~~~p~~~~~liG~D~ 130 (146)
+|..+-.. .|. +-++. +.+.+ +.+.+++|.|-
T Consensus 91 ~F~~~~~~--ls~e~Fi~~~l~~~l-~~~~iVvG~Df 124 (305)
T PRK05627 91 PFDEEFAK--LSAEEFIEDLLVKGL-NAKHVVVGFDF 124 (305)
T ss_pred cCCHHHhc--CCHHHHHHHHHHhcc-CCCEEEECCCC
Confidence 55322111 122 23333 22223 33337888883
No 61
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=97.37 E-value=0.00074 Score=58.28 Aligned_cols=85 Identities=15% Similarity=0.285 Sum_probs=52.7
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc--cCCCCCHHHHHHHHHHHhcCCCCeEEec
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK--KRGLISAEHRINLCNLACKSSDFIMVDP 96 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~--k~~~~~~~~R~~Ml~lai~~~~~i~v~~ 96 (146)
..+++. ..|+||=.|.||+..+++|++.. | ..+|+..--..-..++ ..++.+.++|.+++.. ++-.+.+-+.
T Consensus 250 ~~~iVy-v~G~FDlfH~GHi~~L~~Ak~lG--d-~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~a-ck~VD~VVi~- 323 (418)
T PLN02406 250 DARIVY-IDGAFDLFHAGHVEILRLARALG--D-FLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLA-CRYVDEVIIG- 323 (418)
T ss_pred CCeEEE-ECCeeccCCHHHHHHHHHHHHhC--C-EEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhc-cCcccEEEeC-
Confidence 356666 59999999999999999999864 3 4444321101001122 2578999999998766 5554544442
Q ss_pred ccccCCCccchHHHHHHH
Q 032168 97 WEANQSGYQRTLTVLSRV 114 (146)
Q Consensus 97 ~E~~~~~~~yT~~tl~~l 114 (146)
..+..|.+.|+++
T Consensus 324 -----ap~~~~~~~i~~~ 336 (418)
T PLN02406 324 -----APWEVSKDMITTF 336 (418)
T ss_pred -----CCCCCCHHHHHHh
Confidence 2234455655544
No 62
>PRK07143 hypothetical protein; Provisional
Probab=97.34 E-value=0.0018 Score=53.12 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=59.1
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccccc--CCCCCHHHHHHHHHHHhcCCCCeE
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK--RGLISAEHRINLCNLACKSSDFIM 93 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k--~~~~~~~~R~~Ml~lai~~~~~i~ 93 (146)
+..++++++ .-|.||-+|.||.++++.|.+.. +.. ++-++-.|..- +.+ ..+.+.++|+++++. + ..+.+.
T Consensus 11 ~~~~~~~vv-aiG~FDGvH~GHq~Ll~~a~~~~--~~~-vV~tF~~P~~~-~~~~~~~l~~~~er~~~l~~-~-Gvd~~~ 83 (279)
T PRK07143 11 NFKFEKPTF-VLGGFESFHLGHLELFKKAKESN--DEI-VIVIFKNPENL-PKNTNKKFSDLNSRLQTLAN-L-GFKNII 83 (279)
T ss_pred CCCCCCeEE-EEccCCcCCHHHHHHHHHHHHCC--CcE-EEEEeCChHHh-cccCcccCCCHHHHHHHHHH-C-CCCEEE
Confidence 344455555 47999999999999999999742 232 23222223221 111 247889999999865 2 335566
Q ss_pred Eeccccc--CCCccchHHHHHHHHHHcCCCCeeeeecc
Q 032168 94 VDPWEAN--QSGYQRTLTVLSRVKNFLIEAGLISTGMD 129 (146)
Q Consensus 94 v~~~E~~--~~~~~yT~~tl~~l~~~~p~~~~~liG~D 129 (146)
+-+|..+ +-.+.-.++ .+.+ .+.+.+++|.|
T Consensus 84 ~~~F~~~~a~ls~e~Fi~---~ll~--l~~~~iVvG~D 116 (279)
T PRK07143 84 LLDFNEELQNLSGNDFIE---KLTK--NQVSFFVVGKD 116 (279)
T ss_pred EeCCCHHHhCCCHHHHHH---HHHh--cCCCEEEECCC
Confidence 6666433 222322333 3333 23444788888
No 63
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.0019 Score=54.92 Aligned_cols=110 Identities=22% Similarity=0.166 Sum_probs=70.8
Q ss_pred hhhcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 032168 9 KLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (146)
Q Consensus 9 ~~~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~ 88 (146)
.+|...+.++-+.+++ --|+||+|.||-.|.+.|++.. |++.+.|- +.- +|.+-++++-|++-.+..++.
T Consensus 173 ~~R~~f~~kgwk~vva--fQTRNp~HraHEyl~K~Al~~v--dgllv~pl-VG~-----tk~gD~~~e~rm~~ye~l~~~ 242 (397)
T COG2046 173 ETREVFKEKGWKTVVA--FQTRNPPHRAHEYLQKRALEKV--DGLLVHPL-VGA-----TKPGDIPDEVRMEYYEALLKH 242 (397)
T ss_pred HHHHHHHhcCCeEEEE--EecCCCchHHHHHHHHHHHHhc--CcEEEEee-ecc-----ccCCCchHHHHHHHHHHHHHh
Confidence 3455555445455555 5899999999999999999997 56655432 111 256779999999999999987
Q ss_pred CC---C--eEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 89 SD---F--IMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 89 ~~---~--i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
.. . +.+..+...-.+|...+- =.-+|+.|.-.+ ||+|-|.
T Consensus 243 Yyp~dr~~Ls~~~~aMRyagPrEa~~-HaIIRkNyGcTH-fIVGRDH 287 (397)
T COG2046 243 YYPPDRVFLSVLPAAMRYAGPREALL-HAIIRKNYGCTH-FIVGRDH 287 (397)
T ss_pred CCCCCcEEEEecHHHhhhcCcHHHHH-HHHHHhhcCCee-eeecCCC
Confidence 42 2 344444444444433221 022455554445 8998885
No 64
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=97.11 E-value=0.01 Score=50.94 Aligned_cols=111 Identities=19% Similarity=0.127 Sum_probs=71.7
Q ss_pred hhcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC-
Q 032168 10 LSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS- 88 (146)
Q Consensus 10 ~~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~- 88 (146)
+|+..+..+-++|+. -=|-||+|.||..+.+.|++.. |.+.+-|- +.+ .|.+-++++-|++-.+.++++
T Consensus 177 ~r~~f~~~gw~~Vva--fqTrnP~HraHe~l~~~a~e~~--d~lll~pl-vG~-----~k~~di~~~~r~~~~~~~~~~y 246 (391)
T PRK04149 177 TRELFEEKGWKTVVA--FQTRNPPHRAHEYLQKCALEIV--DGLLLNPL-VGE-----TKSGDIPAEVRMEAYEALLKNY 246 (391)
T ss_pred HHHHHHHcCCCeEEE--eecCCCCchHHHHHHHHHHHhc--CeEEEecC-cCC-----CCCCCCCHHHHHHHHHHHHHhc
Confidence 344444444567666 4679999999999999999976 45544332 122 256789999999999999885
Q ss_pred C--CCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 89 S--DFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 89 ~--~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
. +.+.+..+...---....=..+..+-.+.-++.-||+|-|.
T Consensus 247 ~p~~~v~l~~lp~~mryAGPrEa~lhAivrkN~GcTh~IvGrDH 290 (391)
T PRK04149 247 YPKDRVLLSVTPAAMRYAGPREAIFHAIVRKNYGCTHFIVGRDH 290 (391)
T ss_pred CCCCcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCC
Confidence 2 34556655443221222333445555555577769999874
No 65
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.05 E-value=0.0021 Score=53.31 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=52.2
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEE-EecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEe
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCV-IGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVD 95 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~v-vp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~ 95 (146)
..++|+.+ -=--||.|+||-.++++|..++ |-+.+ | .+ .....+|+++|++|++.-+.+.+++.+.
T Consensus 143 ~gkkIgaI-VMNANPFTLGH~YLVEqAaaqc--DwlHLFv------V~---eD~S~f~y~~R~~Lv~~G~~~l~Nvt~H 209 (352)
T COG3053 143 PGKKIGAI-VMNANPFTLGHRYLVEQAAAQC--DWLHLFV------VK---EDSSLFPYEDRLDLVKKGTADLPNVTVH 209 (352)
T ss_pred CCCeeEEE-EEeCCCccchhHHHHHHHHhhC--CEEEEEE------Ee---cccccCCHHHHHHHHHHhhccCCceEEe
Confidence 34677776 6678999999999999999997 45532 2 11 1356899999999999999999987765
No 66
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.85 E-value=0.018 Score=51.58 Aligned_cols=110 Identities=14% Similarity=0.042 Sum_probs=71.7
Q ss_pred hcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC
Q 032168 11 SLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD 90 (146)
Q Consensus 11 ~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~ 90 (146)
+...+..+-++|+. -=|-||+|.||..+++.|++.++. .+.+ +|.- ...|.+-++++-|++-.+.++++.|
T Consensus 178 r~~f~~~gw~~v~a--fqtrnP~Hr~He~l~~~a~~~~d~-~lll-----~p~~-G~~k~~d~~~~~r~~~~~~~~~~~p 248 (568)
T PRK05537 178 RARFRKLGWRRVVA--FQTRNPLHRAHEELTKRAAREVGA-NLLI-----HPVV-GMTKPGDIDHFTRVRCYEALLDKYP 248 (568)
T ss_pred HHHHHHcCCCcEEE--EecCCCCcHHHHHHHHHHHHhcCC-eEEE-----ecCC-CCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 33333444466666 467999999999999999998742 3433 3321 1125678999999999999998866
Q ss_pred C--eEEecccccCCCccchHHHHHHHHHHcCCCCeeeeecc
Q 032168 91 F--IMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMD 129 (146)
Q Consensus 91 ~--i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D 129 (146)
. +.+..+...--.....=..+..+-.+.-++..||+|-|
T Consensus 249 ~~~~~l~~~p~~mryaGpreai~hAi~r~N~Gcth~ivGrd 289 (568)
T PRK05537 249 PATTLLSLLPLAMRMAGPREALWHAIIRRNYGCTHFIVGRD 289 (568)
T ss_pred CCcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCC
Confidence 3 44555544322222233355555555667777999866
No 67
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=96.74 E-value=0.0026 Score=54.43 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=29.6
Q ss_pred CCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccC---CCCCHHHHHHHHHH
Q 032168 28 GSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR---GLISAEHRINLCNL 84 (146)
Q Consensus 28 GSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~---~~~~~~~R~~Ml~l 84 (146)
--|||.|+||...++++++..+.|-+++|-+. +|-.. .+++--.|.+|.-.
T Consensus 8 aEYNPFHnGH~y~i~~~k~~~~ad~ii~vMSG------nFvQRGEPAi~dKw~RA~~AL~ 61 (388)
T PF05636_consen 8 AEYNPFHNGHLYQIEQAKKITGADVIIAVMSG------NFVQRGEPAIIDKWTRAEMALK 61 (388)
T ss_dssp ---TT--HHHHHHHHHHH---TSSEEEEEE--------TTSBTSSB-SS-HHHHHHHHHH
T ss_pred EeECCccHHHHHHHHHHhccCCCCEEEEEECC------CcccCCCeeeCCHHHHHHHHHH
Confidence 57999999999999999999998886655221 22233 47888899888433
No 68
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=96.73 E-value=0.0021 Score=52.10 Aligned_cols=68 Identities=25% Similarity=0.260 Sum_probs=47.8
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc-ccC----CCCCHHHHHHHHHHHhcCCC
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY-KKR----GLISAEHRINLCNLACKSSD 90 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~-~k~----~~~~~~~R~~Ml~lai~~~~ 90 (146)
+..+-.++++ |||||=.|+||--++..|.... .|++ |++. +.+.. +|+ -+-|.++|++-+...+.+..
T Consensus 138 ~a~~~~~~al-GGTFDrLH~gHKvLLs~aa~la-~~~l-VvGV----~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IK 210 (293)
T KOG3351|consen 138 PANKFMVVAL-GGTFDRLHDGHKVLLSVAAELA-SDRL-VVGV----TDDELLKKKVLKELIEPIEERKEHVSNFLKSIK 210 (293)
T ss_pred chhcceeEEe-ccchhhhccchHHHHHHHHHHh-hceE-EEEe----cChHHHHHhHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 4445567775 9999999999999999988765 3444 4432 22222 222 26788999999999988753
No 69
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=96.24 E-value=0.006 Score=51.77 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=37.7
Q ss_pred CCCchhhHHHHHHHHHHHHhhCCCcEE-EEecccCCCCcccccCCCCCHHHHHHHHHH
Q 032168 28 GSFNPPTFMHLRMFELARDTLNSEGYC-VIGGYMSPVNDAYKKRGLISAEHRINLCNL 84 (146)
Q Consensus 28 GSFnP~H~GHl~l~~~a~~~~~~d~v~-vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~l 84 (146)
--|||+|+||..+++.|.+..+.|.++ +|+|-+.-.+ ...+.+.-+|.+|.-.
T Consensus 8 ~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgdf~qRg----epai~~k~~r~~~aL~ 61 (358)
T COG1323 8 AEYNPFHNGHQYHINKAREEFKGDEIIAVMSGDFTQRG----EPAIGHKWERKKMALE 61 (358)
T ss_pred eecCcccccHHHHHHHHHHhccCCceEEeeecchhhcC----CCccccHHHHHhhhhh
Confidence 569999999999999999988767654 4555332222 3356777888877443
No 70
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=95.73 E-value=0.059 Score=44.83 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=58.9
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcE-EEEecccCCCCccccc-----CCCCCHHHHHHHHHHHhcCCCCeE
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGY-CVIGGYMSPVNDAYKK-----RGLISAEHRINLCNLACKSSDFIM 93 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v-~vvp~~~~p~~~~~~k-----~~~~~~~~R~~Ml~lai~~~~~i~ 93 (146)
...++ .=|.||=+|.||.++++.|.+....+.+ .+|-+ +.|+...+.. ..+.+.++|+++++.. ..+.+.
T Consensus 15 ~~~~l-~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~Vit-F~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~--gvd~~~ 90 (304)
T COG0196 15 RGCVL-TIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVIT-FEPHPRELLKPDKPPTRLTPLREKIRLLAGY--GVDALV 90 (304)
T ss_pred CCcEE-EEEcCCccchhHHHHHHHHHHHHHHhCCceEEEE-ecCCCHHHcCCCCCccccCCHHHHHHHHHhc--CCcEEE
Confidence 34444 4699999999999999999977654433 22222 4444322211 1378899999887652 234666
Q ss_pred EecccccCC--CccchHHHHHHHHHHcCCCCeeeeecc
Q 032168 94 VDPWEANQS--GYQRTLTVLSRVKNFLIEAGLISTGMD 129 (146)
Q Consensus 94 v~~~E~~~~--~~~yT~~tl~~l~~~~p~~~~~liG~D 129 (146)
+.+|..+-. .+...++ .+. +..+++..++|.|
T Consensus 91 v~~F~~~fa~ls~~~Fv~---~lv-~~l~~k~ivvG~D 124 (304)
T COG0196 91 VLDFDLEFANLSAEEFVE---LLV-EKLNVKHIVVGFD 124 (304)
T ss_pred EEeCCHhHhhCCHHHHHH---HHH-hccCCcEEEEecc
Confidence 777764422 2222333 111 2223444677877
No 71
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=95.11 E-value=0.046 Score=45.78 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=39.2
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc----ccCCCCCHHHHHHHHHH
Q 032168 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY----KKRGLISAEHRINLCNL 84 (146)
Q Consensus 22 i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~----~k~~~~~~~~R~~Ml~l 84 (146)
.-+..-|+||-+|.||.+.+.+|++.. |+++ ++. ++|.- +-.++.+.++|++|++.
T Consensus 9 ~rVw~DGCfDm~HyGHanaLrQAkalG--dkLi-vGV----HsDeeI~~nKGpPV~t~eERy~~v~~ 68 (358)
T KOG2803|consen 9 VRVWADGCFDMVHYGHANALRQAKALG--DKLI-VGV----HSDEEITLNKGPPVFTDEERYEMVKA 68 (358)
T ss_pred eeEEeccchhhhhhhhhHHHHHHHHhC--CeEE-EEe----cchHHHHhcCCCCcccHHHHHHHHhh
Confidence 334459999999999999999999764 3553 321 22211 12368999999999765
No 72
>PLN02660 pantoate--beta-alanine ligase
Probab=93.84 E-value=0.21 Score=41.25 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=38.2
Q ss_pred ceEEEEe-CCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc-----cCCCCCHHHHHHHHHHH
Q 032168 20 TYVVLVA-TGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK-----KRGLISAEHRINLCNLA 85 (146)
Q Consensus 20 ~~i~llf-GGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~-----k~~~~~~~~R~~Ml~la 85 (146)
++|+++- -|. .|.||..+++.|++..+ ..|+.-+.+|.. +. .+...+.++|+++++.+
T Consensus 21 ~~igfVpTmG~---LH~GH~~LI~~a~~~a~---~vVvTffvnP~q--f~~~ed~~~yp~tle~d~~ll~~~ 84 (284)
T PLN02660 21 KRIALVPTMGY---LHEGHLSLVRAARARAD---VVVVSIYVNPGQ--FAPGEDLDTYPRDFDGDLRKLAAL 84 (284)
T ss_pred CeEEEEEcCch---hhHHHHHHHHHHHHhCC---EEEEEEeCChHH--cCCccccccCCCCHHHHHHHHHHc
Confidence 4555542 233 99999999999999763 334433344443 21 23578899999998775
No 73
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=92.77 E-value=0.4 Score=39.35 Aligned_cols=61 Identities=20% Similarity=0.162 Sum_probs=39.1
Q ss_pred cceEEEE-eCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 032168 19 KTYVVLV-ATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (146)
Q Consensus 19 k~~i~ll-fGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~---~k~~~~~~~~R~~Ml~la 85 (146)
.++|+++ .-|. .|.||..+++.|++.. ...|+.-+.+|..=+. ..+...+.++++++++.+
T Consensus 21 ~~~ig~V~TmG~---LH~GH~~LI~~a~~~a---~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~ 85 (277)
T cd00560 21 GKTIGFVPTMGA---LHEGHLSLVRRARAEN---DVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA 85 (277)
T ss_pred CCeEEEEECCCc---ccHHHHHHHHHHHHhC---CEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC
Confidence 3456553 2333 9999999999999986 3444443444543110 123467899999998875
No 74
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=92.18 E-value=0.6 Score=40.45 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=57.9
Q ss_pred EEEeCCCCchhhHHHHHHHHHHHHhhC---CCc-EEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC---CC-CeEE
Q 032168 23 VLVATGSFNPPTFMHLRMFELARDTLN---SEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS---SD-FIMV 94 (146)
Q Consensus 23 ~llfGGSFnP~H~GHl~l~~~a~~~~~---~d~-v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~---~~-~i~v 94 (146)
+++.---=||+|+||..+++.-++++- .+. |.+ ..|.. .+.|.+-+|..-|+..-...++. +| +.-|
T Consensus 417 avfafqlrnpvhnghallm~dt~~~ll~~g~k~pvll----lhplg-gwtkdddvpl~~rmkqh~avl~e~vldpe~tvv 491 (627)
T KOG4238|consen 417 AVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLL----LHPLG-GWTKDDDVPLDWRMKQHAAVLEEGVLDPESTVV 491 (627)
T ss_pred eEEEeeecCccccchhhHhHhHHHHHHHhcccCceEE----EecCC-CCccCCCccchhhhHHHHHHHHhccCCccceEE
Confidence 333344569999999999988877762 222 433 34443 34466678888898877776665 33 3334
Q ss_pred eccccc--CCCccchHHHHHHHHHHc-CCCCeeeeecc
Q 032168 95 DPWEAN--QSGYQRTLTVLSRVKNFL-IEAGLISTGMD 129 (146)
Q Consensus 95 ~~~E~~--~~~~~yT~~tl~~l~~~~-p~~~~~liG~D 129 (146)
+-|-.- ..+| -++-=|.+.+. .+++|+|+|-|
T Consensus 492 aifpspmmyagp---tevqwh~rsrm~ag~~~yivgrd 526 (627)
T KOG4238|consen 492 AIFPSPMMYAGP---TEVQWHCRSRMIAGANFYIVGRD 526 (627)
T ss_pred EEcCCchhcCCc---hhhhhhHHHHhhccCeeEEeccC
Confidence 333221 1122 22333455544 57777888877
No 75
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=91.59 E-value=0.6 Score=38.40 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 032168 33 PTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (146)
Q Consensus 33 ~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~---~k~~~~~~~~R~~Ml~la 85 (146)
+|.||..+++.|++.. ...|+.-+.+|..=.. ..+...+.++|+++++.+
T Consensus 33 lH~GH~~Li~~a~~~a---~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~ 85 (281)
T PRK00380 33 LHEGHLSLVREARAEA---DIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA 85 (281)
T ss_pred eeHHHHHHHHHHHHhC---CEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc
Confidence 9999999999999876 3434433333432000 113467899999998875
No 76
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=91.40 E-value=0.69 Score=38.14 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=38.5
Q ss_pred ceEEEEe-CCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 032168 20 TYVVLVA-TGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (146)
Q Consensus 20 ~~i~llf-GGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~---~k~~~~~~~~R~~Ml~la 85 (146)
++|+++- -|. .|.||..+++.|++.. ...|+.-+.+|..=.. ..+...+.++|+++++.+
T Consensus 22 ~~ig~VpTmG~---LH~GH~~LI~~a~~~a---~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 85 (282)
T TIGR00018 22 KTVGFVPTMGN---LHDGHMSLIDRAVAEN---DVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL 85 (282)
T ss_pred CeEEEEECCCc---ccHHHHHHHHHHHHhC---CeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc
Confidence 4566542 333 9999999999999986 2444433344432100 123478899999998875
No 77
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=90.55 E-value=0.82 Score=38.29 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=46.9
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCC-CCcccccCCCCCHHHHHHHHHH
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSP-VNDAYKKRGLISAEHRINLCNL 84 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p-~~~~~~k~~~~~~~~R~~Ml~l 84 (146)
.|.-.+|-++.-|=||=.|.||..-+++|.+.+. .+.+|-|..+= ....++-..+.+..+|.+-++-
T Consensus 58 ~p~~RPVRVYADGIyDLFH~GHarqL~QaK~~FP--NvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrH 125 (348)
T KOG2804|consen 58 LPTDRPVRVYADGIYDLFHYGHARQLEQAKKLFP--NVYLIVGVCSDELTHKFKGRTVMNENERYEALRH 125 (348)
T ss_pred CCCCCceEEEccchHHHhhhhHHHHHHHHHHhCC--CeEEEEeecCchhhhhccCceecChHHHHHHhhh
Confidence 3456788888999999999999999999999986 46554332210 0012233457889999876654
No 78
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=89.73 E-value=0.7 Score=38.86 Aligned_cols=56 Identities=23% Similarity=0.355 Sum_probs=36.8
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccC--CCCCHHHHH
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRI 79 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~--~~~~~~~R~ 79 (146)
.+|+. .-|+||=.|.||+..++.|.+..+ ..+++-..-+.-+.|+.. ++.+..+|+
T Consensus 198 ~kvVY-vdGaFDLFH~GHl~~Le~ak~lgd---yLIvGI~~D~~vneykgs~~PiMnl~ER~ 255 (358)
T KOG2803|consen 198 DKVVY-VDGAFDLFHAGHLDFLEKAKRLGD---YLIVGIHTDQTVNEYKGSNYPIMNLHERV 255 (358)
T ss_pred CcEEE-EcCchhhhccchHHHHHHHHhccC---ceEEEeecCcchhhhccCCCccchHHHHH
Confidence 45555 499999999999999999999863 333332111222234333 477788885
No 79
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=89.45 E-value=0.88 Score=33.21 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=44.8
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS 89 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~ 89 (146)
++.-.-|-+...|++||. .+..|+.. +.|+|.|+++-+.-.+ -..+..-+..|++.++..++..
T Consensus 27 p~~vRiIrv~CsGrvn~~------fvl~Al~~-GaDGV~v~GC~~geCH---y~~GN~ka~rR~~~lke~l~el 90 (132)
T COG1908 27 PPNVRIIRVMCSGRVNPE------FVLKALRK-GADGVLVAGCKIGECH---YISGNYKAKRRMELLKELLKEL 90 (132)
T ss_pred CCceEEEEeeccCccCHH------HHHHHHHc-CCCeEEEeccccccee---eeccchHHHHHHHHHHHHHHHh
Confidence 444444555589999995 23344443 5699999988766554 2456688899999999988763
No 80
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=85.85 E-value=4.7 Score=32.53 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=55.8
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCC--c------c-cccCCCCCHHHHHHHHHHHh
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVN--D------A-YKKRGLISAEHRINLCNLAC 86 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~--~------~-~~k~~~~~~~~R~~Ml~lai 86 (146)
-++.+++|+-||..=.||-..++...+...+... |...++-.|+--.| | + +.=+..-+.++|+++.+...
T Consensus 99 ~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~-d~adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~ 177 (237)
T PF00837_consen 99 AKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFS-DVADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLK 177 (237)
T ss_pred ccCCCCeEEEcccccchHHHHHHHHHHHHHHHhh-hhhheehhhHhhhCcCCCccCCCCceeecCCCCHHHHHHHHHHHH
Confidence 3667889998888889999999999988877663 33344444553222 1 1 22234578999999999988
Q ss_pred cCCCC--eEEeccc
Q 032168 87 KSSDF--IMVDPWE 98 (146)
Q Consensus 87 ~~~~~--i~v~~~E 98 (146)
+..+. +-|++.+
T Consensus 178 ~~~~~~pi~vD~md 191 (237)
T PF00837_consen 178 EEFPQCPIVVDTMD 191 (237)
T ss_pred hhCCCCCEEEEccC
Confidence 77654 4555443
No 81
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=85.00 E-value=0.84 Score=37.63 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=35.7
Q ss_pred CCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc---cCCCCCHHHHHHHHHHH
Q 032168 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (146)
Q Consensus 17 ~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~---k~~~~~~~~R~~Ml~la 85 (146)
...+.|+++ -|=-=.|.||+.+++.|+... .+.|+.-+++|..=+.. .+...+.+.=+++++.+
T Consensus 19 ~~~~~igfV--PTMGaLHeGHlsLi~~A~~~~---d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~ 85 (280)
T PF02569_consen 19 KAGKTIGFV--PTMGALHEGHLSLIRRARAEN---DVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA 85 (280)
T ss_dssp HTTSSEEEE--EE-SS--HHHHHHHHHHHHHS---SEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT
T ss_pred HcCCeEEEE--CCCchhhHHHHHHHHHHHhCC---CEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc
Confidence 345677775 333345999999999999886 46677667777652111 12345566777777664
No 82
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=81.81 E-value=4.2 Score=35.53 Aligned_cols=67 Identities=24% Similarity=0.318 Sum_probs=44.3
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCc-cc--ccCCCCCHHHHHHHHHHHhcCCCCeEE
Q 032168 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVND-AY--KKRGLISAEHRINLCNLACKSSDFIMV 94 (146)
Q Consensus 22 i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~-~~--~k~~~~~~~~R~~Ml~lai~~~~~i~v 94 (146)
+++ .-|+||=.|.||+..+..|+... |.+ |++- .|-.+- .. ...++-+.+.|..++- +++..+|+-+
T Consensus 334 vvf-TNGcFDIlH~GHvsyL~~Ar~lg--d~L-ivg~-NsDaSvkrLKG~~RPin~~~~Ra~vLa-~L~~VD~vV~ 403 (467)
T COG2870 334 VVF-TNGCFDILHAGHVTYLAQARALG--DRL-IVGV-NSDASVKRLKGESRPINSEEDRAAVLA-ALESVDLVVI 403 (467)
T ss_pred EEE-ecchhhhccccHHHHHHHHHhhC--CeE-EEEe-ccchhhhhhcCCCCCCCcHHHHHHHHh-hcccceEEEE
Confidence 555 69999999999999999999986 344 4321 111110 00 0235778888887764 4788787543
No 83
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=80.01 E-value=6.3 Score=32.59 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=43.9
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc---cCCCCCHHHHHHHHHHH
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~---k~~~~~~~~R~~Ml~la 85 (146)
.+..++|+++ =|-.=.|.||+.+++.|++.. .+.|+..+++|..-... .+...+.++=+++++..
T Consensus 18 r~~gk~Vg~V--PTMG~LH~GHlsLVr~A~~~~---d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~ 85 (285)
T COG0414 18 RKEGKRVGLV--PTMGNLHEGHLSLVRRAKKEN---DVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKE 85 (285)
T ss_pred HHcCCEEEEE--cCCcccchHHHHHHHHHhhcC---CeEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhc
Confidence 5556778886 344557999999999999875 45566677888753211 12346667777777664
No 84
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=78.59 E-value=5.5 Score=35.52 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=42.1
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc---cCCCCCHHHHHHHHHHH
Q 032168 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (146)
Q Consensus 21 ~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~---k~~~~~~~~R~~Ml~la 85 (146)
+||++ -|=-=.|.||+.|++.|++.. .+.|+.-+++|..=+.. .+...+.+.=+++++.+
T Consensus 21 ~ig~V--PTMG~LH~GHlsLi~~A~~~~---d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~ 83 (512)
T PRK13477 21 TIGFV--PTMGALHQGHLSLIRRARQEN---DVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA 83 (512)
T ss_pred cEEEE--CCCcchhHHHHHHHHHHHHhC---CEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc
Confidence 77776 455557999999999999985 35666667787652211 23456778888887775
No 85
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=69.02 E-value=53 Score=26.32 Aligned_cols=95 Identities=8% Similarity=-0.038 Sum_probs=50.1
Q ss_pred EEEeCCCCchhhHHHHHHHHHHHHhhCC--CcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeccccc
Q 032168 23 VLVATGSFNPPTFMHLRMFELARDTLNS--EGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (146)
Q Consensus 23 ~llfGGSFnP~H~GHl~l~~~a~~~~~~--d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~ 100 (146)
+++ ||.-|...... +.++..+..+- .+|.|+|+. + .+++.-.+..+.+++....-.+....+.
T Consensus 2 ~~i-GG~~~~~~~~~--i~~~~~~lag~~~~rI~~iptA----S--------~~~~~~~~~~~~~~~~lG~~~v~~l~i~ 66 (250)
T TIGR02069 2 VII-GGAEDKVGDRE--ILREFVSRAGGEDAIIVIITSA----S--------EEPREVGERYITIFSRLGVKEVKILDVR 66 (250)
T ss_pred eEE-eCccccCChHH--HHHHHHHHhCCCCceEEEEeCC----C--------CChHHHHHHHHHHHHHcCCceeEEEecC
Confidence 454 88888755443 77777777653 257778753 1 1233444555555555442112222221
Q ss_pred CCCccchHHHHHHHHHHcCCCCe-eeeeccchHHH--HH
Q 032168 101 QSGYQRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF--WC 136 (146)
Q Consensus 101 ~~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l--W~ 136 (146)
......+-+.++.++ +++. |+.|.|++.-+ |+
T Consensus 67 ~r~~a~~~~~~~~l~----~ad~I~~~GGnq~~l~~~l~ 101 (250)
T TIGR02069 67 EREDASDENAIALLS----NATGIFFTGGDQLRITSLLG 101 (250)
T ss_pred ChHHccCHHHHHHHh----hCCEEEEeCCCHHHHHHHHc
Confidence 111112223344444 5577 99999988777 64
No 86
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=66.27 E-value=19 Score=31.33 Aligned_cols=71 Identities=21% Similarity=0.170 Sum_probs=43.6
Q ss_pred cEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccC---CCccchHHHHHH---------H-HHHc
Q 032168 52 GYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQ---SGYQRTLTVLSR---------V-KNFL 118 (146)
Q Consensus 52 ~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~---~~~~yT~~tl~~---------l-~~~~ 118 (146)
-++++|++++|+. ...|.+.|.+++++|=+..-+|.-+|+..+. +.+..+...+.. | |-..
T Consensus 229 ~~y~~P~~qNPtG------~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~ 302 (459)
T COG1167 229 AVYVTPTFQNPTG------VTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLA 302 (459)
T ss_pred EEEECCCCCCCCC------CccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcc
Confidence 4778888888865 5689999999999994444455555655542 122222222211 1 2345
Q ss_pred CCCCe-eeeec
Q 032168 119 IEAGL-ISTGM 128 (146)
Q Consensus 119 p~~~~-~liG~ 128 (146)
|..++ |+++.
T Consensus 303 PglRlG~vv~p 313 (459)
T COG1167 303 PGLRLGYVVAP 313 (459)
T ss_pred cccceeeeeCC
Confidence 77888 77755
No 87
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=65.01 E-value=17 Score=31.77 Aligned_cols=96 Identities=11% Similarity=0.026 Sum_probs=64.0
Q ss_pred hhhcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCC---Cc-EEEEecccCCCCcccccCCCCCHHHHHHHHHH
Q 032168 9 KLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNS---EG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNL 84 (146)
Q Consensus 9 ~~~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~---d~-v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~l 84 (146)
.++.+++.+ .++.+ +++| |.|=-+++..+...+.. +- +++| |-| -+|...++.
T Consensus 222 ~~r~~l~~~--r~v~i-aaST----H~GEeei~l~~~~~l~~~~~~~llIlV-----PRH-----------pERf~~v~~ 278 (419)
T COG1519 222 ALRRQLGGH--RPVWV-AAST----HEGEEEIILDAHQALKKQFPNLLLILV-----PRH-----------PERFKAVEN 278 (419)
T ss_pred HHHHhcCCC--CceEE-EecC----CCchHHHHHHHHHHHHhhCCCceEEEe-----cCC-----------hhhHHHHHH
Confidence 346666333 45555 5888 99999988888766632 22 4444 333 478888888
Q ss_pred HhcCCCCeEEeccccc----CCCccchHHHHHHHHHHcCCCCe-eeeec
Q 032168 85 ACKSSDFIMVDPWEAN----QSGYQRTLTVLSRVKNFLIEAGL-ISTGM 128 (146)
Q Consensus 85 ai~~~~~i~v~~~E~~----~~~~~yT~~tl~~l~~~~p~~~~-~liG~ 128 (146)
.++... +.+..+... .+...+-.||+-.+...|.-+++ ||=||
T Consensus 279 l~~~~g-l~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGS 326 (419)
T COG1519 279 LLKRKG-LSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGS 326 (419)
T ss_pred HHHHcC-CeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCc
Confidence 777654 445555544 33456778999999999998888 76543
No 88
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=63.17 E-value=40 Score=27.81 Aligned_cols=95 Identities=11% Similarity=0.090 Sum_probs=56.8
Q ss_pred hhhcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 032168 9 KLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (146)
Q Consensus 9 ~~~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~ 88 (146)
+||+.++.++ ++. ..|.|||.. -.+.+..+.+.++.-+..++.+ -.+..-+.++.++.++.++...+.
T Consensus 6 ~lr~~l~~~~---~~~-~pg~~D~lS-------Ari~e~aGf~ai~~ss~~va~s-lG~pD~g~l~~~e~~~~~~~I~~~ 73 (290)
T TIGR02321 6 ALRAALDSGR---LFT-AMAAHNPLV-------AKLAEQAGFGGIWGSGFELSAS-YAVPDANILSMSTHLEMMRAIAST 73 (290)
T ss_pred HHHHHHhCCC---CEE-eccccCHHH-------HHHHHHcCCCEEEECHHHHHHH-CCCCCcccCCHHHHHHHHHHHHhc
Confidence 5777775432 344 599999864 3445556777776544444432 233344689999999998887665
Q ss_pred CCCeEEecccccCCCccchHHHHHHHH
Q 032168 89 SDFIMVDPWEANQSGYQRTLTVLSRVK 115 (146)
Q Consensus 89 ~~~i~v~~~E~~~~~~~yT~~tl~~l~ 115 (146)
.+---+-|.|..-+++.-.+.|++.+-
T Consensus 74 ~~lPv~aD~d~GyG~~~~v~~tV~~~~ 100 (290)
T TIGR02321 74 VSIPLIADIDTGFGNAVNVHYVVPQYE 100 (290)
T ss_pred cCCCEEEECCCCCCCcHHHHHHHHHHH
Confidence 432233456655444444555665555
No 89
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=61.71 E-value=17 Score=30.66 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=21.2
Q ss_pred CCccchHHHHHHHHHHcCCCCeeee
Q 032168 102 SGYQRTLTVLSRVKNFLIEAGLIST 126 (146)
Q Consensus 102 ~~~~yT~~tl~~l~~~~p~~~~~li 126 (146)
+...||...+.++++.||+++|++|
T Consensus 159 NKDPftlk~~~yl~rLfPNAKfllM 183 (378)
T KOG3988|consen 159 NKDPFTLKSLVYLSRLFPNAKFLLM 183 (378)
T ss_pred cCCchHHHHHHHHHHHCCCceEEEE
Confidence 3556999999999999999999444
No 90
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=58.85 E-value=36 Score=27.64 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=11.0
Q ss_pred eEEEEeCCCCchhh
Q 032168 21 YVVLVATGSFNPPT 34 (146)
Q Consensus 21 ~i~llfGGSFnP~H 34 (146)
.+-+++||||+|-+
T Consensus 42 g~~~~r~g~~kpRt 55 (250)
T PRK13397 42 GYNYFRGGAYKPRT 55 (250)
T ss_pred CCCEEEecccCCCC
Confidence 35566899999977
No 91
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=56.11 E-value=94 Score=24.10 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=51.1
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHHHhhC--CCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 22 VVLVATGSFNPPTFMHLRMFELARDTLN--SEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 22 i~llfGGSFnP~H~GHl~l~~~a~~~~~--~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
++++ ||+=++ .....+.+...+..+ ..++.|+|+.- .+.++..+..+.+++....-.+.....
T Consensus 2 l~~i-GGg~~~--~~~~~i~~~~~~~ag~~~~~i~~iptA~------------~~~~~~~~~~~~~~~~lG~~~v~~~~~ 66 (217)
T cd03145 2 LVLI-GGAEDK--YDNRAILQRFVARAGGAGARIVVIPAAS------------EEPAEVGEEYRDVFERLGAREVEVLVI 66 (217)
T ss_pred EEEE-eCCCCC--cCHHHHHHHHHHHcCCCCCcEEEEeCCC------------cChhHHHHHHHHHHHHcCCceeEEecc
Confidence 5665 555433 245556677777765 34577776531 113555666666666543211211111
Q ss_pred cCCCccchHHHHHHHHHHcCCCCe-eeeeccchHHH--HHH
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF--WCD 137 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l--W~~ 137 (146)
.+.....+-+.++.++ +++. |+.|.|...-+ |++
T Consensus 67 ~~~~~a~~~~~~~~l~----~ad~I~~~GG~~~~~~~~l~~ 103 (217)
T cd03145 67 DSREAANDPEVVARLR----DADGIFFTGGDQLRITSALGG 103 (217)
T ss_pred CChHHcCCHHHHHHHH----hCCEEEEeCCcHHHHHHHHcC
Confidence 1111123334444444 5577 99999998887 764
No 92
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=54.28 E-value=1.1e+02 Score=24.35 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=59.3
Q ss_pred cceEEEEeCCCCchh------hHHHHHHHHHHHHhh---CCCc-EEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 032168 19 KTYVVLVATGSFNPP------TFMHLRMFELARDTL---NSEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (146)
Q Consensus 19 k~~i~llfGGSFnP~------H~GHl~l~~~a~~~~---~~d~-v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~ 88 (146)
..++|++ +..++-+ ..-+......|.+++ +.++ |.++.+ | ....+..+|.+=.+.|+++
T Consensus 79 ~iPvV~~-~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~---~-------~~~~~~~~R~~Gy~~Al~~ 147 (279)
T PF00532_consen 79 GIPVVLI-DRYIDNPEGVPSVYIDNYEAGYEATEYLIKKGHRRPIAFIGG---P-------EDSSTSRERLQGYRDALKE 147 (279)
T ss_dssp TSEEEEE-SS-SCTTCTSCEEEEEHHHHHHHHHHHHHHTTCCSTEEEEEE---S-------TTTHHHHHHHHHHHHHHHH
T ss_pred CCCEEEE-EeccCCcccCCEEEEcchHHHHHHHHHHHhcccCCeEEEEec---C-------cchHHHHHHHHHHHHHHHH
Confidence 5788885 7774433 233555555555554 4577 777654 1 2224678899888888888
Q ss_pred CCC-eEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccchH
Q 032168 89 SDF-IMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQ 132 (146)
Q Consensus 89 ~~~-i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~ 132 (146)
..- +.............-.++.++.+-+..|+.+.++.+.|.+.
T Consensus 148 ~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~~nd~~A 192 (279)
T PF00532_consen 148 AGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAIFCANDMMA 192 (279)
T ss_dssp TTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEESSHHHH
T ss_pred cCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEEEEeCHHHH
Confidence 643 22222211122233467788888888787665666666554
No 93
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=53.83 E-value=1.2e+02 Score=24.69 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=52.6
Q ss_pred cceEEEEeCCCCchh--hHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCC-CHHHHHHHHHHHhcCCCCeEEe
Q 032168 19 KTYVVLVATGSFNPP--TFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLI-SAEHRINLCNLACKSSDFIMVD 95 (146)
Q Consensus 19 k~~i~llfGGSFnP~--H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~-~~~~R~~Ml~lai~~~~~i~v~ 95 (146)
++++++++.|++|=- -..|..-++.+.+.+ +++.+.- . .... +.+...+.++.+.+..-.+.+.
T Consensus 1 ~~~v~~~~~g~~~D~g~n~~~~~G~~~~~~~~--~~i~~~~--~---------e~~~~~~~~~~~~~~~~~~~g~dlIi~ 67 (306)
T PF02608_consen 1 KKKVALLDPGGINDKGFNQSAYEGLKRAEKEL--DGIEIIY--V---------ENVPETDADYEEAIRQLADQGYDLIIG 67 (306)
T ss_dssp -EEEEEESSS-CCCSSHHHHHHHHHHHHHHHC--TTEEEEE--E---------ES-S-TCHHHHHHHHHHHHTT-SEEEE
T ss_pred CeEEEEEECCCCCCccHHHHHHHHHHHHHHHc--CCceEEE--E---------ecCCccHHHHHHHHHHHHHcCCCEEEE
Confidence 467888889988754 466666677777776 3343320 0 1111 4577778888887665554443
Q ss_pred -cccccCCCccchHHHHHHHHHHcCCCCeeee
Q 032168 96 -PWEANQSGYQRTLTVLSRVKNFLIEAGLIST 126 (146)
Q Consensus 96 -~~E~~~~~~~yT~~tl~~l~~~~p~~~~~li 126 (146)
.++ .-+.+..+.++||+..|+++
T Consensus 68 ~g~~--------~~~~~~~vA~~yPd~~F~~~ 91 (306)
T PF02608_consen 68 HGFE--------YSDALQEVAKEYPDTKFIII 91 (306)
T ss_dssp ESGG--------GHHHHHHHHTC-TTSEEEEE
T ss_pred ccHH--------HHHHHHHHHHHCCCCEEEEE
Confidence 332 33678889999999997444
No 94
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=51.64 E-value=44 Score=26.68 Aligned_cols=52 Identities=4% Similarity=-0.154 Sum_probs=32.2
Q ss_pred hhcccccCCcceEEEEeCCCCchhhHHHH-HHHHHHHHhhCCCcEEEEecccCC
Q 032168 10 LSLESKTQGKTYVVLVATGSFNPPTFMHL-RMFELARDTLNSEGYCVIGGYMSP 62 (146)
Q Consensus 10 ~~~~~~~~~k~~i~llfGGSFnP~H~GHl-~l~~~a~~~~~~d~v~vvp~~~~p 62 (146)
+..++.......++++ ||.++|.+.+=+ .++..+++.+..|...+-.+.+++
T Consensus 125 ia~~l~~~~~~~vill-GG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~ 177 (252)
T PRK10906 125 VANTLMAKEDFRIILA-GGELRSRDGGIIGEATLDFISQFRLDFGILGISGIDS 177 (252)
T ss_pred HHHHHhhCCCCEEEEE-CCEEecCCCccCCHHHHHHHHhccCCEEEEcCCEECC
Confidence 3444433333567664 999999985433 345566777777877665555554
No 95
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=51.31 E-value=59 Score=21.81 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=29.8
Q ss_pred CCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 17 ~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
++|-.++.++.++..|+-..++.-+..+.+.++.+++.++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~ 64 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIG 64 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeee
Confidence 44444455455559999999999999988887656777664
No 96
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=50.33 E-value=40 Score=26.06 Aligned_cols=21 Identities=10% Similarity=0.096 Sum_probs=18.1
Q ss_pred CccchHHHHHHHHHHcCCCCe
Q 032168 103 GYQRTLTVLSRVKNFLIEAGL 123 (146)
Q Consensus 103 ~~~yT~~tl~~l~~~~p~~~~ 123 (146)
.-..||+.+..++++|++.++
T Consensus 21 ~L~Et~~imk~lk~~~~~~~v 41 (187)
T COG1036 21 LLPETYQIMKELKKEYGDVEV 41 (187)
T ss_pred ccHHHHHHHHHHHhhcCCceE
Confidence 345799999999999999887
No 97
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=48.96 E-value=63 Score=22.96 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=14.3
Q ss_pred eeeeccchHHH--HHHHHHHH
Q 032168 124 ISTGMDHMQKF--WCDLYTQR 142 (146)
Q Consensus 124 ~liG~D~l~~l--W~~~~~~~ 142 (146)
.+.|.|+..++ +.++.+.+
T Consensus 97 ~~~G~Dq~~h~~~~~~i~~~~ 117 (143)
T cd00802 97 HLGGSDQLGHIELGLELLKKA 117 (143)
T ss_pred EEechhHHHHHHHHHHHHHHh
Confidence 67899998887 66666554
No 98
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=48.47 E-value=1.2e+02 Score=23.11 Aligned_cols=57 Identities=11% Similarity=-0.169 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 74 SAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 74 ~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
...+|.+-.+.+++.++.+.+...+.......-.++.++.+.+.+|+.+.+++..|.
T Consensus 139 ~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~ 195 (272)
T cd06300 139 VDEDRYAGAKEVLKEYPGIKIVGEVYGDWDQAVAQKAVADFLASNPDVDGIWTQGGD 195 (272)
T ss_pred chHHHHHHHHHHHHHCCCcEEEeecCCCCCHHHHHHHHHHHHHhCCCcCEEEecCCC
Confidence 447899999999988775554321111111122456777777777766665555554
No 99
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=47.31 E-value=23 Score=26.28 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=37.8
Q ss_pred hcccccCCcceEEEEeCCCCchhh---HHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHh
Q 032168 11 SLESKTQGKTYVVLVATGSFNPPT---FMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLAC 86 (146)
Q Consensus 11 ~~~~~~~~k~~i~llfGGSFnP~H---~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai 86 (146)
...+.......++++ ||.++|-+ .|.. +...++.+..|...+-++.+++. .++.....--..++.++
T Consensus 54 a~~l~~~~~~~vi~~-GG~~~~~~~~~~G~~--a~~~l~~~~~d~afi~~~gi~~~------~G~~~~~~~~a~vk~~~ 123 (161)
T PF00455_consen 54 ANELSENPNIEVILL-GGEVNPKSLSFVGPI--ALEALRQFRFDKAFIGADGISEE------GGLTTSDEEEAEVKRAM 123 (161)
T ss_pred HHHHHhcCceEEEEe-CCEEEcCCCcEECch--HHHHHHhhccceEEecccEecCC------CccccchHHHHHHHHHH
Confidence 334433345677774 99999976 4443 44556777777776655555552 34444444444444433
No 100
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=44.69 E-value=78 Score=20.31 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=29.3
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhC-CCcEEEE
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLN-SEGYCVI 56 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~-~d~v~vv 56 (146)
+.+++.|.+|.+|+-..-+..++.+.+.++ -+++.||
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v 39 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFV 39 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 456778999999998888888888888886 4677776
No 101
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=44.28 E-value=70 Score=22.16 Aligned_cols=40 Identities=20% Similarity=0.105 Sum_probs=29.5
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
++..++++|.+++.|+=..++.-+....+.+.-+++.++.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~ 62 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVA 62 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEE
Confidence 3445555568999999999998888888877545676653
No 102
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=43.50 E-value=2e+02 Score=24.16 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=45.8
Q ss_pred CChhhhhcccccCCc-ceEEEEeCCCCchh--hHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc--cCCCCCHHHHH
Q 032168 5 LPLEKLSLESKTQGK-TYVVLVATGSFNPP--TFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK--KRGLISAEHRI 79 (146)
Q Consensus 5 ~~~~~~~~~~~~~~k-~~i~llfGGSFnP~--H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~--k~~~~~~~~R~ 79 (146)
||=+.+..+++..=+ +.+.+ .....+|+ +.-.+.++..|++..+..++.+|--|++...+.-+ ....++...-.
T Consensus 41 FpdGE~~v~i~~~vrg~dV~i-vqs~~~p~nd~l~eLll~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA 119 (332)
T PRK00553 41 FADGETYIRFDESVRNKDVVI-FQSTCSPVNDSLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVA 119 (332)
T ss_pred CCCCCEEEEECCCCCCCEEEE-EcCCCCCCchHHHHHHHHHHHHHHcCCCeEEEEeeccccchhhcccCCCCCccHHHHH
Confidence 444445555542222 33444 46666676 45556667777887888888655445555543211 11367788878
Q ss_pred HHHHHH
Q 032168 80 NLCNLA 85 (146)
Q Consensus 80 ~Ml~la 85 (146)
+|++.+
T Consensus 120 ~ll~~~ 125 (332)
T PRK00553 120 DLLTKA 125 (332)
T ss_pred HHHHhc
Confidence 887764
No 103
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=43.43 E-value=35 Score=30.06 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCC
Q 032168 75 AEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAG 122 (146)
Q Consensus 75 ~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~ 122 (146)
.+.|++++-. ...+.+.+ +..|+...|-++.++++|+.||+.+
T Consensus 252 dK~rl~ll~~--aGvdvviL---DSSqGnS~~qiemik~iK~~yP~l~ 294 (503)
T KOG2550|consen 252 DKERLDLLVQ--AGVDVVIL---DSSQGNSIYQLEMIKYIKETYPDLQ 294 (503)
T ss_pred hhHHHHHhhh--cCCcEEEE---ecCCCcchhHHHHHHHHHhhCCCce
Confidence 4555555333 33444444 4457888899999999999999887
No 104
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=43.20 E-value=25 Score=23.98 Aligned_cols=30 Identities=10% Similarity=0.096 Sum_probs=23.2
Q ss_pred ccchHHHHHHHHHHcCCCCeeeeeccchHH
Q 032168 104 YQRTLTVLSRVKNFLIEAGLISTGMDHMQK 133 (146)
Q Consensus 104 ~~yT~~tl~~l~~~~p~~~~~liG~D~l~~ 133 (146)
.+....+.+++++.++..+++++|++.+.+
T Consensus 64 ~ts~~~~~~~l~~~~~~~~v~vlG~~~l~~ 93 (101)
T PF13344_consen 64 ITSGMAAAEYLKEHKGGKKVYVLGSDGLRE 93 (101)
T ss_dssp EEHHHHHHHHHHHHTTSSEEEEES-HHHHH
T ss_pred EChHHHHHHHHHhcCCCCEEEEEcCHHHHH
Confidence 345677889999988888889999997765
No 105
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=42.72 E-value=37 Score=23.96 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=29.1
Q ss_pred CccchHHHHHHHHHHcC--CCCe--eeeeccchHHH-------HHHHHHHHhh
Q 032168 103 GYQRTLTVLSRVKNFLI--EAGL--ISTGMDHMQKF-------WCDLYTQRRT 144 (146)
Q Consensus 103 ~~~yT~~tl~~l~~~~p--~~~~--~liG~D~l~~l-------W~~~~~~~~~ 144 (146)
+...+-..++.+++.|. ...| +|+|-|--..+ |.++.+.+-.
T Consensus 58 ~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 58 GKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred cCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhC
Confidence 34556678888888886 5566 68888855444 7777776644
No 106
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=42.67 E-value=1.4e+02 Score=24.76 Aligned_cols=97 Identities=8% Similarity=0.095 Sum_probs=54.7
Q ss_pred hhhhcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhc
Q 032168 8 EKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACK 87 (146)
Q Consensus 8 ~~~~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~ 87 (146)
.++|..++.++ .++ ..|.||+..- .+.+..+.+-+++-+..++-....+..-+.++.++.++.++....
T Consensus 7 ~~lr~ll~~~~---~l~-~p~~~Da~SA-------ri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~ 75 (292)
T PRK11320 7 ARFRAALAAEK---PLQ-IVGTINAYHA-------LLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITD 75 (292)
T ss_pred HHHHHHHcCCC---cEE-ecCCCCHHHH-------HHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHh
Confidence 34555564332 334 4999998652 344555777776554444312222333468999999999988776
Q ss_pred CCCCeEEecccccCCCccchHHHHHHHH
Q 032168 88 SSDFIMVDPWEANQSGYQRTLTVLSRVK 115 (146)
Q Consensus 88 ~~~~i~v~~~E~~~~~~~yT~~tl~~l~ 115 (146)
..+---+-|.|..-+++.-.+.|++.+-
T Consensus 76 ~~~iPviaD~d~GyG~~~~v~r~V~~~~ 103 (292)
T PRK11320 76 ACDLPLLVDIDTGFGGAFNIARTVKSMI 103 (292)
T ss_pred ccCCCEEEECCCCCCCHHHHHHHHHHHH
Confidence 5322123455554444444555555554
No 107
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=42.64 E-value=30 Score=24.01 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHcCCCCeeeeeccchHH
Q 032168 105 QRTLTVLSRVKNFLIEAGLISTGMDHMQK 133 (146)
Q Consensus 105 ~yT~~tl~~l~~~~p~~~~~liG~D~l~~ 133 (146)
.+=.+.|+++.+.||+.+|.++|.+.=.+
T Consensus 49 ~~K~~~i~~i~~~fP~~kfiLIGDsgq~D 77 (100)
T PF09949_consen 49 EHKRDNIERILRDFPERKFILIGDSGQHD 77 (100)
T ss_pred hHHHHHHHHHHHHCCCCcEEEEeeCCCcC
Confidence 36678999999999999988898875443
No 108
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=42.29 E-value=23 Score=28.61 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=29.4
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCC
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPV 63 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~ 63 (146)
.+..+.|+++ -|--=.|.||+.+++++.+.. .+.|+.-+++|.
T Consensus 20 R~~g~tIgfV--PTMG~LHeGH~SLvrqs~~~~---~~tVVSIfVNP~ 62 (283)
T KOG3042|consen 20 RETGETIGFV--PTMGCLHEGHASLVRQSVKEN---TYTVVSIFVNPS 62 (283)
T ss_pred HhcCCeEEEe--cccccccccHHHHHHHHHhhC---ceEEEEEEechh
Confidence 4456777775 445557999999999999886 344454455554
No 109
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=41.67 E-value=78 Score=23.04 Aligned_cols=42 Identities=10% Similarity=0.020 Sum_probs=30.0
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecc
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGY 59 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~ 59 (146)
+.+.++++|.+++.|...-.+.-+..+.+.++-+++.|+...
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is 65 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAIN 65 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEe
Confidence 446678888999999987766666777766654567776543
No 110
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=40.88 E-value=24 Score=31.70 Aligned_cols=37 Identities=14% Similarity=0.301 Sum_probs=27.7
Q ss_pred HhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCC
Q 032168 85 ACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEA 121 (146)
Q Consensus 85 ai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~ 121 (146)
|+...|-.--+.|+.+.++..|.+|.++|+|++|.+.
T Consensus 111 ALRGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGDy 147 (590)
T KOG0564|consen 111 ALRGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGDY 147 (590)
T ss_pred hhcCCCCCCccccccccCCchhHHHHHHHHHHHhCCe
Confidence 4455554444558877788999999999999999653
No 111
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=40.72 E-value=1.9e+02 Score=23.83 Aligned_cols=99 Identities=8% Similarity=0.119 Sum_probs=56.0
Q ss_pred ChhhhhcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHH
Q 032168 6 PLEKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLA 85 (146)
Q Consensus 6 ~~~~~~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~la 85 (146)
|-.++|+.++.++ .++ ..|.||+.. -.+.+..+++-++.-+..++- .-.+..-+.++.++.++.++..
T Consensus 1 ~~~~lr~l~~~~~---~l~-~p~~~Da~S-------Ari~e~aGf~Ai~~sg~~~a~-~lG~pD~g~lt~~e~~~~~~~I 68 (285)
T TIGR02317 1 PGKAFRAALAKED---ILQ-IPGAINAMA-------ALLAERAGFEAIYLSGAAVAA-SLGLPDLGITTLDEVAEDARRI 68 (285)
T ss_pred ChHHHHHHHhCCC---cEE-eCCCCCHHH-------HHHHHHcCCCEEEEcHHHHHH-hCCCCCCCCCCHHHHHHHHHHH
Confidence 3345666664432 344 499999864 223445577777665444443 2233333578999999988886
Q ss_pred hcCCCCeEEecccccCCCccchHHHHHHHHH
Q 032168 86 CKSSDFIMVDPWEANQSGYQRTLTVLSRVKN 116 (146)
Q Consensus 86 i~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~ 116 (146)
....+---+-|.|..-+++.-.+.|++.+-+
T Consensus 69 ~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~ 99 (285)
T TIGR02317 69 TRVTDLPLLVDADTGFGEAFNVARTVREMED 99 (285)
T ss_pred HhccCCCEEEECCCCCCCHHHHHHHHHHHHH
Confidence 6543322234555554445455555555543
No 112
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=40.23 E-value=1.4e+02 Score=21.34 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=43.9
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS 89 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~ 89 (146)
+++-+.|-+-..|+.||.|.-| |++. +.|+|.|+++.-.-.+ | ..+..-.+.|+++++..++..
T Consensus 26 p~~vriIrvpC~Grv~~~~il~------Af~~-GADGV~V~gC~~g~Ch--~-~~Gn~~a~~Rv~~~k~~L~~~ 89 (124)
T PF02662_consen 26 PPNVRIIRVPCSGRVDPEFILR------AFEK-GADGVLVAGCHPGDCH--Y-REGNYRAEKRVERLKKLLEEL 89 (124)
T ss_pred CCCeEEEEccCCCccCHHHHHH------HHHc-CCCEEEEeCCCCCCCC--c-chhhHHHHHHHHHHHHHHHHc
Confidence 4545566666899999988644 4544 5799999877422111 1 245567899999999998863
No 113
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=39.91 E-value=61 Score=26.76 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=51.9
Q ss_pred CCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCc-EEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEe
Q 032168 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVD 95 (146)
Q Consensus 17 ~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~-v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~ 95 (146)
..+.+++++ ||+=||.|-- .++..+....+-.+ +|+| .|... ......-+|..-+...+. ...+++-
T Consensus 20 ~~~~~llii-Ggaedk~~~~--~iL~~f~~r~g~~~A~i~I----~paas----~ep~~iG~~y~rife~~g-v~~v~il 87 (293)
T COG4242 20 AAKLALLII-GGAEDKVHDR--EILREFGGRAGGEKAYIVI----IPAAS----REPRAIGGNYIRIFEMMG-VEEVQIL 87 (293)
T ss_pred hccceEEEE-cCccccCCcH--HHHHHhccCCCCCceEEEE----EecCc----cChhhhccchhhHHHHhc-cceeEEE
Confidence 445666664 9999999976 66666655554433 4432 23221 111122222221222111 2345555
Q ss_pred cccccCCCccchHHHHHHHHHHcCCCCe-eeeeccchHHH--HHH
Q 032168 96 PWEANQSGYQRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF--WCD 137 (146)
Q Consensus 96 ~~E~~~~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l--W~~ 137 (146)
+.+..++..+-++ +.. ..++.- |..|.|+++-+ |++
T Consensus 88 dir~R~~a~~s~~--~~~----v~~a~gIfftGGDQ~ri~~~lkd 126 (293)
T COG4242 88 DIRNREDASSSDI--VAK----VENATGIFFTGGDQLRIIGSLKD 126 (293)
T ss_pred eeecccccchHHH--HHH----HHhCceEEEecCcceeeeeeccC
Confidence 5544333332222 222 224455 99999999888 874
No 114
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=39.90 E-value=31 Score=27.86 Aligned_cols=30 Identities=23% Similarity=0.132 Sum_probs=21.9
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHh
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDT 47 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~ 47 (146)
++.+|+++-|||+||-|-=--.-+..|.+.
T Consensus 123 ~~grVvIf~gGtg~P~fTTDt~AALrA~ei 152 (238)
T COG0528 123 EKGRVVIFGGGTGNPGFTTDTAAALRAEEI 152 (238)
T ss_pred HcCCEEEEeCCCCCCCCchHHHHHHHHHHh
Confidence 456888888999999986666666665553
No 115
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=38.09 E-value=2e+02 Score=22.66 Aligned_cols=93 Identities=8% Similarity=0.009 Sum_probs=53.4
Q ss_pred eEEEEeCCCCc--hhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeccc
Q 032168 21 YVVLVATGSFN--PPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (146)
Q Consensus 21 ~i~llfGGSFn--P~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E 98 (146)
||++++.|+.| +....|..=++.+.+.++. ++.++. + ..+.+.-.+.++.++++...+.|..
T Consensus 1 kva~l~~g~~~D~~~n~~~~~G~~~~~~~~gv-~~~~~e----~---------~~~~~~~~~~i~~~~~~g~dlIi~~-- 64 (258)
T cd06353 1 KVAFVYVGPIGDQGWNYAHDEGRKAAEKALGV-EVTYVE----N---------VPEGADAERVLRELAAQGYDLIFGT-- 64 (258)
T ss_pred CEEEEEeCCCCccchhHHHHHHHHHHHHhcCC-eEEEEe----c---------CCchHhHHHHHHHHHHcCCCEEEEC--
Confidence 46777777774 3456666777777666654 343331 1 1134555566777676655555541
Q ss_pred ccCCCccchHHHHHHHHHHcCCCCeeee----eccchHHH
Q 032168 99 ANQSGYQRTLTVLSRVKNFLIEAGLIST----GMDHMQKF 134 (146)
Q Consensus 99 ~~~~~~~yT~~tl~~l~~~~p~~~~~li----G~D~l~~l 134 (146)
..-.-+.+....++||+.+|.++ +.+++.++
T Consensus 65 -----g~~~~~~~~~vA~~~p~~~F~~~d~~~~~~Nv~~~ 99 (258)
T cd06353 65 -----SFGFMDAALKVAKEYPDVKFEHCSGYKTAPNVGSY 99 (258)
T ss_pred -----chhhhHHHHHHHHHCCCCEEEECCCCCCCCCeeeE
Confidence 11244566778889999887443 33565544
No 116
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=37.95 E-value=53 Score=28.18 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=27.4
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
+++..++ .|-|=|| .+-|+++++...++++-+--+++|-
T Consensus 183 ~~~ltIL-vGNSgd~-sNnHieaL~~L~~~~~~~~kIivPL 221 (360)
T PF07429_consen 183 KGKLTIL-VGNSGDP-SNNHIEALEALKQQFGDDVKIIVPL 221 (360)
T ss_pred CCceEEE-EcCCCCC-CccHHHHHHHHHHhcCCCeEEEEEC
Confidence 3345555 4999997 6789999998888776443445663
No 117
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=37.51 E-value=1.8e+02 Score=21.89 Aligned_cols=59 Identities=12% Similarity=-0.002 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccchH
Q 032168 74 SAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQ 132 (146)
Q Consensus 74 ~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~ 132 (146)
....|.+-.+.+++.++.+.+.............++.+..+.++.|+...++.+.|...
T Consensus 135 ~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a 193 (268)
T cd06323 135 AARERGKGFHEVVDKYPGLKVVASQPADFDRAKGLNVMENILQAHPDIKGVFAQNDEMA 193 (268)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEecccCCCCHHHHHHHHHHHHHHCCCcCEEEEcCCchH
Confidence 45789998888888765555443221111122245556666666676665666666443
No 118
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=36.75 E-value=55 Score=26.02 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=31.3
Q ss_pred cccccCCcceEEEEeCCCCchhhHHHHHH-HHHHHHhhCCCcEEEEecccCC
Q 032168 12 LESKTQGKTYVVLVATGSFNPPTFMHLRM-FELARDTLNSEGYCVIGGYMSP 62 (146)
Q Consensus 12 ~~~~~~~k~~i~llfGGSFnP~H~GHl~l-~~~a~~~~~~d~v~vvp~~~~p 62 (146)
.++.......++++ ||.++|-+.+..-. +...++.+..|...+-.+.+++
T Consensus 128 ~~l~~~~~~~vill-GG~~~~~~~~~~G~~~~~~l~~~~~D~afig~~gi~~ 178 (252)
T PRK10681 128 LALQEKPHCRAILC-GGEFHASNAIFKPLDFQQTLDNICPDIAFYSAAGVHV 178 (252)
T ss_pred HHHhhCCCCEEEEE-CcEEecCcceeeCHHHHHHHHhhCCCEEEEeCceecC
Confidence 34433333567774 99999987554443 3456777777877666555555
No 119
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=36.57 E-value=29 Score=30.85 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=25.9
Q ss_pred cCCcceEEEEeCC--CCchhhHHHHHH------HHHHHHhhCCCcEEEE
Q 032168 16 TQGKTYVVLVATG--SFNPPTFMHLRM------FELARDTLNSEGYCVI 56 (146)
Q Consensus 16 ~~~k~~i~llfGG--SFnP~H~GHl~l------~~~a~~~~~~d~v~vv 56 (146)
+....+|.++.|| -+||+|.||..- +.+.+++.+ .+|.+|
T Consensus 18 p~~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G-~~V~~v 65 (490)
T PRK14536 18 PIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLG-YRVTHV 65 (490)
T ss_pred cCCCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcC-CceEEE
Confidence 3344567777776 589999999875 344455544 356655
No 120
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=36.57 E-value=2.1e+02 Score=24.34 Aligned_cols=81 Identities=15% Similarity=0.196 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEec-------ccCCCCcccccCCCCCHHHHHHHHHHHhcC------CC---CeEEecccc
Q 032168 36 MHLRMFELARDTLNSEGYCVIGG-------YMSPVNDAYKKRGLISAEHRINLCNLACKS------SD---FIMVDPWEA 99 (146)
Q Consensus 36 GHl~l~~~a~~~~~~d~v~vvp~-------~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~------~~---~i~v~~~E~ 99 (146)
.+..-++.|.+ .+.|.|.+-.+ ++||..+.-..+.-=|.|.|...+...++. .. .++++..|.
T Consensus 150 ~f~~AA~rA~~-AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~ 228 (363)
T COG1902 150 DFARAARRAKE-AGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDF 228 (363)
T ss_pred HHHHHHHHHHH-cCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc
Confidence 34445556555 67899988765 567765321122345689999987665553 11 368887777
Q ss_pred -cCCCcc--chHHHHHHHHHH
Q 032168 100 -NQSGYQ--RTLTVLSRVKNF 117 (146)
Q Consensus 100 -~~~~~~--yT~~tl~~l~~~ 117 (146)
...+.+ .++..++.|.+.
T Consensus 229 ~~~~g~~~~e~~~la~~L~~~ 249 (363)
T COG1902 229 FDGGGLTIEEAVELAKALEEA 249 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHhc
Confidence 222322 345555556554
No 121
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=36.28 E-value=1.5e+02 Score=20.83 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=37.6
Q ss_pred CChhhhhcccccC-CcceEEEEeCCCCchhhHHHHHH--HHHHHHhhCCCcEEEEecccCCCCccccc-CCCCCHHHHHH
Q 032168 5 LPLEKLSLESKTQ-GKTYVVLVATGSFNPPTFMHLRM--FELARDTLNSEGYCVIGGYMSPVNDAYKK-RGLISAEHRIN 80 (146)
Q Consensus 5 ~~~~~~~~~~~~~-~k~~i~llfGGSFnP~H~GHl~l--~~~a~~~~~~d~v~vvp~~~~p~~~~~~k-~~~~~~~~R~~ 80 (146)
||-+.+..+++.. ..+.++++ ..+.+|++...+++ +..|++..+.++|.+|--|++...+.-.+ ...++...=.+
T Consensus 32 F~dGE~~v~i~~~v~g~dv~ii-qs~~~~~nd~lmeLll~i~a~r~~~a~~i~~ViPYl~YaRQDr~~~ge~isak~~a~ 110 (116)
T PF13793_consen 32 FPDGETYVRIPESVRGKDVFII-QSTSPPVNDNLMELLLLIDALRRAGAKRITLVIPYLPYARQDRRKPGEPISAKVVAK 110 (116)
T ss_dssp -TTS-EEEEESS--TTSEEEEE----SSSHHHHHHHHHHHHHHHHHTTBSEEEEEESS-TTTTSSSSSTTC--HHHHHHH
T ss_pred cCCCCEEEEecccccCCceEEE-EecCCchhHHHHHHHHHHHHHHHcCCcEEEEeccchhhhhhccCCCCCcchHHHHHH
Confidence 4444455555422 23456664 77778876555444 55556666777887665566655432111 12455555555
Q ss_pred HHHH
Q 032168 81 LCNL 84 (146)
Q Consensus 81 Ml~l 84 (146)
|++.
T Consensus 111 lL~~ 114 (116)
T PF13793_consen 111 LLSA 114 (116)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 122
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=35.67 E-value=2e+02 Score=21.92 Aligned_cols=59 Identities=19% Similarity=0.081 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccch
Q 032168 73 ISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHM 131 (146)
Q Consensus 73 ~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l 131 (146)
.+...|.+-.+.+++.++.+.+...+.......-.++.++.+.+.+|+...++...|.+
T Consensus 135 ~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~ 193 (275)
T cd06320 135 FAAEQRTEGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYCNNDTM 193 (275)
T ss_pred ccHHHHHHHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccEEEECCchh
Confidence 45678988888888877555443222111111223455556555666555444444443
No 123
>PRK09701 D-allose transporter subunit; Provisional
Probab=35.64 E-value=2.3e+02 Score=22.58 Aligned_cols=59 Identities=22% Similarity=0.079 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccch
Q 032168 73 ISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHM 131 (146)
Q Consensus 73 ~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l 131 (146)
....+|.+-.+.++++++.+.+...........-..+.++.+-+.+|+.+.++++.|..
T Consensus 169 ~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~I~~~~d~~ 227 (311)
T PRK09701 169 ASGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTM 227 (311)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCCCCEEEECCcch
Confidence 35688999999999887655443211111111123566666666666555455565643
No 124
>cd05535 POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) epsilon has been proposed to play a role in elongation of the leading strand during DNA replication. Pol epsilon might also have a role in DNA repair. The structure of pol epsilon is characteristic of this family with the exception that it contains a large c-terminal domain with an unclear function. Phylogenetic analyses indicate that Pol epsilon is the ortholog to the archaeal Pol B3 rather than to Pol alpha, delta, or zeta. This might be because pol epsilon is ancestral to both archaea and eukaryotes DNA polymerases type B.
Probab=34.36 E-value=1.3e+02 Score=27.80 Aligned_cols=84 Identities=12% Similarity=0.012 Sum_probs=53.3
Q ss_pred eCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC-----CeEEeccc--
Q 032168 26 ATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD-----FIMVDPWE-- 98 (146)
Q Consensus 26 fGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~-----~i~v~~~E-- 98 (146)
-=|.|-|...++..+++.+++.-. + |+. .|... .+.=.-++.+++.++++.-+++.+ .+.+...+
T Consensus 141 wrge~~p~~~~e~~~i~~~l~~e~---f---~~~-~~~~~-~~~~~~l~~~eq~~~l~~rl~~ys~k~y~k~~~~~~~~~ 212 (621)
T cd05535 141 WRGEYFPASRGEYERIKQQLESEK---F---PPL-FPGGP-PKSFHELSPEEQAEELKKRLKDYSRKVYKKTHVTKEEER 212 (621)
T ss_pred eeecccCCCHHHHHHHHHHHHhcc---c---CCc-CCCCC-CcchhhCCHHHHHHHHHHHHHHHHHHHhcccccceeEEE
Confidence 479999999999999999887532 1 110 12110 001135788888888888877632 22222211
Q ss_pred ---ccCCCccchHHHHHHHHHH
Q 032168 99 ---ANQSGYQRTLTVLSRVKNF 117 (146)
Q Consensus 99 ---~~~~~~~yT~~tl~~l~~~ 117 (146)
+.|-..++-++|++.||.+
T Consensus 213 ~~~vCqrEn~Fyvdtvr~Frdr 234 (621)
T cd05535 213 STTICQRENPFYVDTVRAFRDR 234 (621)
T ss_pred eeeeEeccCCcHHhhHHHHHHH
Confidence 2366778899999999854
No 125
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=34.31 E-value=29 Score=30.80 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=24.7
Q ss_pred ceEEEEeCCC--CchhhHHHHHH------HHHHHHhhCCCcEEEE
Q 032168 20 TYVVLVATGS--FNPPTFMHLRM------FELARDTLNSEGYCVI 56 (146)
Q Consensus 20 ~~i~llfGGS--FnP~H~GHl~l------~~~a~~~~~~d~v~vv 56 (146)
.+|.++.||- +|++|.||+.- +.+.++..+ .+|.+|
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G-~~V~~v 63 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLK-YNVNYA 63 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcC-CceEEE
Confidence 5778877875 99999999875 344455544 356554
No 126
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=34.21 E-value=1.4e+02 Score=25.04 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=44.9
Q ss_pred CHHHHHHHHHH--------HhcC-----CCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccchHHHHHHHHH
Q 032168 74 SAEHRINLCNL--------ACKS-----SDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKFWCDLYT 140 (146)
Q Consensus 74 ~~~~R~~Ml~l--------ai~~-----~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~lW~~~~~ 140 (146)
+.+.|+++++. .++. ...+-++..=..-.+..-|+++++.+|+++ +.. ..+|--|+..-|+-+-+
T Consensus 161 t~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpvs~~~~tl~aI~~iK~~~-G~p-t~~GlSNiS~~w~~lk~ 238 (308)
T PRK00979 161 SVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPLPGSGAAIRAIFAVKAKF-GYP-VGCAPHNAPSAWDWLRE 238 (308)
T ss_pred CHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcCccHHHHHHHHHHHHHHc-CCC-eEEEEeCCchHHHHHHH
Confidence 99999999997 3332 345555543333355668999999999998 333 78888877776655443
No 127
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=34.15 E-value=49 Score=26.34 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=24.5
Q ss_pred ceEEEEeCCCCchhh---HHHHHHHHHHHHhhCCCcEEEEecccC
Q 032168 20 TYVVLVATGSFNPPT---FMHLRMFELARDTLNSEGYCVIGGYMS 61 (146)
Q Consensus 20 ~~i~llfGGSFnP~H---~GHl~l~~~a~~~~~~d~v~vvp~~~~ 61 (146)
-.+++ .||.++|-. .|.. + ..++.+..|...+-.+.++
T Consensus 136 ~~v~l-~GG~~~~~~~~~~G~~--~-~~l~~~~~d~aFig~~gi~ 176 (251)
T PRK13509 136 DSVII-MGGQYNKSQSITLSPQ--G-SENSLYAGHWMFTSGKGLT 176 (251)
T ss_pred CEEEE-ECCeEcCCcceeECHH--H-HHHHhCcCCEEEECCCcCC
Confidence 46666 599999985 5664 3 5667777777655433433
No 128
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=33.93 E-value=2.2e+02 Score=21.87 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=47.2
Q ss_pred EEEEeCCCCchh-hHHHHHHHHHHHHhh-CCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 22 VVLVATGSFNPP-TFMHLRMFELARDTL-NSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 22 i~llfGGSFnP~-H~GHl~l~~~a~~~~-~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
+++ .||.++.. =.+.-.+.+.+.+.. ...++.+||+.- . +.++.....+.+++....+.+.....
T Consensus 2 l~~-igg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~IptAs----------~--~~~~~~~~~~~a~~~l~G~~~~~~~~ 68 (212)
T cd03146 2 LLL-TSGGGLGYLAHALPAIDDLLLSLTKARPKVLFVPTAS----------G--DRDEYTARFYAAFESLRGVEVSHLHL 68 (212)
T ss_pred EEE-EeCCcccccccchHHHHHHHHHhccCCCeEEEECCCC----------C--CHHHHHHHHHHHHhhccCcEEEEEec
Confidence 455 48888761 112223333333332 224577776531 1 34566777777777662223332211
Q ss_pred cCCCccchHHHHHHHHHHcCCCCe-eeeeccchHHH--HHH
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF--WCD 137 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l--W~~ 137 (146)
.. +-+..+.+ .+++. |+-|.|...-+ |++
T Consensus 69 ~~-----~~~~~~~l----~~ad~I~l~GG~~~~~~~~l~~ 100 (212)
T cd03146 69 FD-----TEDPLDAL----LEADVIYVGGGNTFNLLAQWRE 100 (212)
T ss_pred cC-----cccHHHHH----hcCCEEEECCchHHHHHHHHHH
Confidence 01 11223333 35677 88898877777 765
No 129
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=33.37 E-value=35 Score=26.68 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=23.2
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHH------HHHHHHhhCCCcEEEEec
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRM------FELARDTLNSEGYCVIGG 58 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l------~~~a~~~~~~d~v~vvp~ 58 (146)
.+++.++.+--..-++|+|.||+.- +.+.++..+ .+|.++-|
T Consensus 17 ~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G-~~V~~~~g 64 (213)
T cd00672 17 NPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLG-YKVRYVQN 64 (213)
T ss_pred CCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcC-CeeEEEee
Confidence 3444555553344567889999864 333344444 35655543
No 130
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=33.35 E-value=93 Score=25.70 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=31.2
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccC
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMS 61 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~ 61 (146)
+|++|+++||| --+=|.-=+.-++.+.+.+..+++.+++.++.
T Consensus 2 ~~~~i~vl~GG-~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~ 44 (343)
T PRK14568 2 NRIKVGILFGG-CSEEHPVSVKSAIEVARNLDTEKYEPFYIGIT 44 (343)
T ss_pred CCcEEEEEECC-CCCchHHHHHhHHHHHHhhcccCCeEEEEEEC
Confidence 36899999887 56667777777888888886666666665543
No 131
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=33.21 E-value=37 Score=28.81 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.0
Q ss_pred eCCCCchhhHHHHHHHHHHHHhh
Q 032168 26 ATGSFNPPTFMHLRMFELARDTL 48 (146)
Q Consensus 26 fGGSFnP~H~GHl~l~~~a~~~~ 48 (146)
-|-||||...-|-.++..|.+.-
T Consensus 183 ~G~SYNP~~edhqelL~~a~~~E 205 (387)
T PF07767_consen 183 PGQSYNPSFEDHQELLAKAVEKE 205 (387)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHH
Confidence 58999999999999998886653
No 132
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=32.74 E-value=2.1e+02 Score=26.52 Aligned_cols=94 Identities=15% Similarity=0.051 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC-----CCeEEeccccc----CC
Q 032168 32 PPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS-----DFIMVDPWEAN----QS 102 (146)
Q Consensus 32 P~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~-----~~i~v~~~E~~----~~ 102 (146)
||+.|-.++|..+...-+.-=|.+ +||-. ---.|...++.-++..+++- +-+-|++.|.- .-
T Consensus 546 p~~sGKTaLAA~iA~~S~FPFvKi----iSpe~-----miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI 616 (744)
T KOG0741|consen 546 PPGSGKTALAAKIALSSDFPFVKI----ISPED-----MIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI 616 (744)
T ss_pred CCCCChHHHHHHHHhhcCCCeEEE----eChHH-----ccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc
Confidence 899999999887766554333433 35532 23477788999888888862 23677777764 33
Q ss_pred CccchHHHHHHHH---HHcCCC--CeeeeeccchHHH
Q 032168 103 GYQRTLTVLSRVK---NFLIEA--GLISTGMDHMQKF 134 (146)
Q Consensus 103 ~~~yT~~tl~~l~---~~~p~~--~~~liG~D~l~~l 134 (146)
||.|+--+|+.|. ++-|.. ++||+|.-+-.++
T Consensus 617 GPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~v 653 (744)
T KOG0741|consen 617 GPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREV 653 (744)
T ss_pred CchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHH
Confidence 7888877777665 555544 6688887654443
No 133
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=32.28 E-value=1.1e+02 Score=23.99 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=22.6
Q ss_pred CcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEe
Q 032168 51 EGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVD 95 (146)
Q Consensus 51 d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~ 95 (146)
.+++++-+++||+. ++| +|.+..+....+++|-
T Consensus 94 aG~iviva~ISP~r-----------~~R-~~aR~~~~~~~FiEVy 126 (197)
T COG0529 94 AGLIVIVAFISPYR-----------EDR-QMARELLGEGEFIEVY 126 (197)
T ss_pred CCeEEEEEeeCccH-----------HHH-HHHHHHhCcCceEEEE
Confidence 46888888888875 344 5777777776665553
No 134
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=32.08 E-value=26 Score=25.41 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=18.1
Q ss_pred CcceEEEEeC-CCCchhhHHHHHHHHHH
Q 032168 18 GKTYVVLVAT-GSFNPPTFMHLRMFELA 44 (146)
Q Consensus 18 ~k~~i~llfG-GSFnP~H~GHl~l~~~a 44 (146)
+...++++.| |+.-|.-..|--+-+..
T Consensus 60 ~~~~vv~ltGvG~l~P~~R~h~lL~~l~ 87 (126)
T PF08747_consen 60 DDRDVVFLTGVGSLFPFIRSHELLNNLQ 87 (126)
T ss_pred CCCcEEEEeCcchhcchhhHHHHHHHHH
Confidence 3355666555 88899999997654443
No 135
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=31.89 E-value=1.1e+02 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=18.1
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHh
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDT 47 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~ 47 (146)
.++++++||++.+- .|+..+++.+.+.
T Consensus 202 ~~~ilv~~G~lg~~-k~~~~li~~~~~~ 228 (391)
T PRK13608 202 KQTILMSAGAFGVS-KGFDTMITDILAK 228 (391)
T ss_pred CCEEEEECCCcccc-hhHHHHHHHHHhc
Confidence 45566679999953 5677777765443
No 136
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=31.39 E-value=1.4e+02 Score=21.30 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=11.6
Q ss_pred CCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 28 GSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 28 GSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
|..+|.+..++.-+-.+.+.-....+++.+
T Consensus 16 ~~~~~~~~~R~~~a~~L~~~g~~~~il~SG 45 (155)
T PF02698_consen 16 GQLSPESRERLDEAARLYKAGYAPRILFSG 45 (155)
T ss_dssp -----S-HHHHHHHHHHHH-HHT--EEEE-
T ss_pred ccccHhHHHHHHHHHHHHhcCCCCeEEECC
Confidence 677777777776666665543333444443
No 137
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=31.29 E-value=1e+02 Score=26.36 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCC
Q 032168 76 EHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAG 122 (146)
Q Consensus 76 ~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~ 122 (146)
.+|++.+-.+....+.+.|+ .-++-..+.+++++++|+.||+..
T Consensus 110 ~er~~~L~~~~~g~D~iviD---~AhGhs~~~i~~ik~ik~~~P~~~ 153 (346)
T PRK05096 110 FEKTKQILALSPALNFICID---VANGYSEHFVQFVAKAREAWPDKT 153 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEE---CCCCcHHHHHHHHHHHHHhCCCCc
Confidence 45555443333344555554 335556689999999999999876
No 138
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=31.15 E-value=1.1e+02 Score=21.44 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=35.2
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCC
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVN 64 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~ 64 (146)
|+|+++||| ..+=|.==+.-++...+.+..+++.++|-++....
T Consensus 1 m~v~vlfGG-~S~EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k~g 44 (117)
T PF01820_consen 1 MRVAVLFGG-RSSEHEVSLRSARNVYEALDKEKYEVIPIYIDKDG 44 (117)
T ss_dssp EEEEEEEET-SSTTHHHHHHHHHHHHHHSHTTTEEEEEEEETTTS
T ss_pred CeEEEEecc-CchhHHHHHHHHHHHHHHHhhhcceEEEEeecCCC
Confidence 688998666 57778888888999999997788999888775543
No 139
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=30.67 E-value=2.8e+02 Score=22.98 Aligned_cols=96 Identities=6% Similarity=0.000 Sum_probs=53.5
Q ss_pred hhhcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 032168 9 KLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (146)
Q Consensus 9 ~~~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~ 88 (146)
++|..++.++ .++ ..|.||+.. -.+.+..+.+.++.-++..+-..-.+..-+.++.++.++.++.....
T Consensus 7 ~~r~l~~~~~---~l~-~p~v~Da~S-------Arl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~ 75 (294)
T TIGR02319 7 TFRELMNAPE---ILV-VPSAYDALS-------AKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLA 75 (294)
T ss_pred HHHHHhcCCC---cEE-eecCcCHHH-------HHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhc
Confidence 4555553322 334 499999854 34455567777765443333222222234689999999988887765
Q ss_pred CCCeEEecccccCCCccchHHHHHHHH
Q 032168 89 SDFIMVDPWEANQSGYQRTLTVLSRVK 115 (146)
Q Consensus 89 ~~~i~v~~~E~~~~~~~yT~~tl~~l~ 115 (146)
.+---+-|.|..-+++.-.+.|++.+.
T Consensus 76 ~~lPv~aD~dtGyG~~~~v~r~V~~~~ 102 (294)
T TIGR02319 76 VDVPVIMDADAGYGNAMSVWRATREFE 102 (294)
T ss_pred cCCCEEEECCCCCCCcHHHHHHHHHHH
Confidence 332233455555444444555555555
No 140
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=30.37 E-value=64 Score=22.87 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=25.5
Q ss_pred hhhcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhh
Q 032168 9 KLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTL 48 (146)
Q Consensus 9 ~~~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~ 48 (146)
+.+...+.+++.++++ +-|+++|- +|+..+++.+....
T Consensus 4 ~~~~~~~~~~~~~~il-~~g~~~~~-K~~~~li~a~~~l~ 41 (172)
T PF00534_consen 4 KLREKLKIPDKKKIIL-FIGRLDPE-KGIDLLIEAFKKLK 41 (172)
T ss_dssp HHHHHTTT-TTSEEEE-EESESSGG-GTHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCeEEE-EEecCccc-cCHHHHHHHHHHHH
Confidence 4445555555566555 69999994 88888888776553
No 141
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=29.93 E-value=1.9e+02 Score=23.64 Aligned_cols=30 Identities=3% Similarity=-0.082 Sum_probs=25.6
Q ss_pred cchHHHHHHHHHHcCCCCeeeeeccchHHH
Q 032168 105 QRTLTVLSRVKNFLIEAGLISTGMDHMQKF 134 (146)
Q Consensus 105 ~yT~~tl~~l~~~~p~~~~~liG~D~l~~l 134 (146)
+-+.-|..++++.++..++|++|.+.+...
T Consensus 76 TS~~at~~~l~~~~~~~kv~viG~~~l~~~ 105 (269)
T COG0647 76 TSGDATADYLAKQKPGKKVYVIGEEGLKEE 105 (269)
T ss_pred cHHHHHHHHHHhhCCCCEEEEECCcchHHH
Confidence 347789999999999988899999988665
No 142
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=29.79 E-value=3.1e+02 Score=22.33 Aligned_cols=34 Identities=9% Similarity=0.004 Sum_probs=21.9
Q ss_pred CCCccchHHHHHHHHHHcCCCCe-eeeeccchHHH
Q 032168 101 QSGYQRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF 134 (146)
Q Consensus 101 ~~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l 134 (146)
++.+.-|.+.+...++...+.++ ++.|.+.+.++
T Consensus 83 q~~~~Gta~Al~~a~~~i~~~~~~lv~gD~i~~~~ 117 (292)
T PRK15480 83 QPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGH 117 (292)
T ss_pred CCCCCCHHHHHHHHHHHhCCCCEEEEECCeeeecc
Confidence 45566788887777666655567 66676665444
No 143
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=29.15 E-value=45 Score=22.75 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=22.1
Q ss_pred CCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 17 ~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
++.-++.+ .+|++||++--+ -++.+.+.+.--.+..+.+
T Consensus 32 ~~~~piL~-l~~~~Dp~TP~~--~a~~~~~~l~~s~lvt~~g 70 (103)
T PF08386_consen 32 PGAPPILV-LGGTHDPVTPYE--GARAMAARLPGSRLVTVDG 70 (103)
T ss_pred CCCCCEEE-EecCcCCCCcHH--HHHHHHHHCCCceEEEEec
Confidence 33466666 599999997432 2344444454334555544
No 144
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=28.87 E-value=1.3e+02 Score=25.45 Aligned_cols=37 Identities=5% Similarity=0.065 Sum_probs=26.3
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 21 ~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
++.++.|-|=|| .+-|+++++.+.++.+-+--+++|=
T Consensus 146 ~~tIlvGNSgd~-SN~Hie~L~~l~~~~~~~v~ii~Pl 182 (322)
T PRK02797 146 KMTILVGNSGDR-SNRHIEALRALHQQFGDNVKIIVPM 182 (322)
T ss_pred ceEEEEeCCCCC-cccHHHHHHHHHHHhCCCeEEEEEC
Confidence 344445999997 6789999999999886332345653
No 145
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=28.81 E-value=2.1e+02 Score=24.34 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=7.3
Q ss_pred EEeCCCCchhhH
Q 032168 24 LVATGSFNPPTF 35 (146)
Q Consensus 24 llfGGSFnP~H~ 35 (146)
+++||+|+|-+.
T Consensus 148 ~~r~~~~kpRts 159 (360)
T PRK12595 148 LLRGGAFKPRTS 159 (360)
T ss_pred EEEccccCCCCC
Confidence 445777776653
No 146
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=28.62 E-value=2e+02 Score=22.12 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=27.7
Q ss_pred cCCCCeEEecc-cccCCCccchHHHHHHHHHHcCCCCe-eeeecc
Q 032168 87 KSSDFIMVDPW-EANQSGYQRTLTVLSRVKNFLIEAGL-ISTGMD 129 (146)
Q Consensus 87 ~~~~~i~v~~~-E~~~~~~~yT~~tl~~l~~~~p~~~~-~liG~D 129 (146)
+..|.+-+-++ +...++ .-.++.++.+++.+|+.++ ++.|.|
T Consensus 35 ~~~pd~vl~dl~d~~mp~-~~Gl~~~~~l~~~~p~~~iIvlt~~~ 78 (207)
T PRK11475 35 RISFSAVIFSLSAMRSER-REGLSCLTELAIKFPRMRRLVIADDD 78 (207)
T ss_pred cCCCCEEEeeccccCCCC-CCHHHHHHHHHHHCCCCCEEEEeCCC
Confidence 34566666443 322233 2368999999999999998 666655
No 147
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=27.95 E-value=53 Score=27.43 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=20.1
Q ss_pred chh-hHHHH-------HHHHHHHHhhCCC-cEEEEec
Q 032168 31 NPP-TFMHL-------RMFELARDTLNSE-GYCVIGG 58 (146)
Q Consensus 31 nP~-H~GHl-------~l~~~a~~~~~~d-~v~vvp~ 58 (146)
||| |.|+- +|++.|.+++... ++|+|..
T Consensus 231 NPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 231 NPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 566 98885 6678888888654 4777743
No 148
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=27.32 E-value=54 Score=24.32 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=12.3
Q ss_pred CCCCchh-hHH-HHHHHHHH
Q 032168 27 TGSFNPP-TFM-HLRMFELA 44 (146)
Q Consensus 27 GGSFnP~-H~G-Hl~l~~~a 44 (146)
+|..||. |.| |+.+.+++
T Consensus 59 ~G~tNPFLHlsmHLsI~EQ~ 78 (137)
T PF08897_consen 59 QGETNPFLHLSMHLSIQEQL 78 (137)
T ss_pred cCccchhHHHHHHHHHHHHH
Confidence 7999997 643 66665543
No 149
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=27.10 E-value=2.8e+02 Score=21.03 Aligned_cols=60 Identities=12% Similarity=-0.037 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccchH
Q 032168 73 ISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQ 132 (146)
Q Consensus 73 ~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~ 132 (146)
.+..+|.+=.+.++++++.+.+.............++.++.+-+.+++.+.++...|.+.
T Consensus 135 ~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~~a 194 (270)
T cd06308 135 SPAIERHDGFKEALSKYPKIKIVAQQDGDWLKEKAEEKMEELLQANPDIDLVYAHNDPMA 194 (270)
T ss_pred chHHHHHHHHHHHHHHCCCCEEEEecCCCccHHHHHHHHHHHHHhCCCCcEEEeCCcHHH
Confidence 355789988888998886554432111111122245666666666665554455555443
No 150
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.86 E-value=4.2e+02 Score=23.00 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=23.1
Q ss_pred CCchhhHHHHHHHHHHHHhhC--CCcEEEEecccCCCCc
Q 032168 29 SFNPPTFMHLRMFELARDTLN--SEGYCVIGGYMSPVND 65 (146)
Q Consensus 29 SFnP~H~GHl~l~~~a~~~~~--~d~v~vvp~~~~p~~~ 65 (146)
|-+-+|.||+-.+...+..-. .+-+.++++...-..|
T Consensus 42 Ta~slHlGhlv~l~kL~~fQ~aGh~~ivLigd~ta~IgD 80 (401)
T COG0162 42 TAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIGD 80 (401)
T ss_pred CCCccchhhHHHHHHHHHHHHCCCeEEEEecccceecCC
Confidence 334479999999888766543 3335556665554443
No 151
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=26.84 E-value=3.8e+02 Score=23.00 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=36.2
Q ss_pred cCCcceEEEEeCCCC---chhhHHHHHHHHHHHHhhCCCcEEEEecccCCCC
Q 032168 16 TQGKTYVVLVATGSF---NPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVN 64 (146)
Q Consensus 16 ~~~k~~i~llfGGSF---nP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~ 64 (146)
.++...++++ .|.| +|||.+|.....+..-..+.|-|+-+|...+-.+
T Consensus 28 ~~~d~~i~~m-sgdf~qRgepai~~k~~r~~~aL~~g~D~VIelP~~~s~q~ 78 (358)
T COG1323 28 FKGDEIIAVM-SGDFTQRGEPAIGHKWERKKMALEGGADLVIELPLERSGQG 78 (358)
T ss_pred ccCCceEEee-ecchhhcCCCccccHHHHHhhhhhcCceEEEEcceEEecCC
Confidence 5555666664 8888 8999999998777777777788887887766554
No 152
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.52 E-value=2.9e+02 Score=20.92 Aligned_cols=59 Identities=12% Similarity=-0.017 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccch
Q 032168 73 ISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHM 131 (146)
Q Consensus 73 ~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l 131 (146)
....+|.+-.+.+++..+.+.+...........-.++++..+.+++++.+.++.++|..
T Consensus 136 ~~~~~r~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~ 194 (273)
T cd06310 136 STTDQREEGFLEGLKEYPGIEIVATQYSDSDYAKALDITEDLLTANPDLKGIFGANEGS 194 (273)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEecccCCcCHHHHHHHHHHHHHhCCCceEEEecCchh
Confidence 35578988888888876444443211111111234566666655666545444555543
No 153
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=26.33 E-value=1.5e+02 Score=23.25 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=24.2
Q ss_pred CCCccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 101 QSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 101 ~~~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
.++...-++.+..+++++|+.++.++|.-.
T Consensus 204 ~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~ 233 (358)
T cd03812 204 QKNHEFLIEIFAELLKKNPNAKLLLVGDGE 233 (358)
T ss_pred ccChHHHHHHHHHHHHhCCCeEEEEEeCCc
Confidence 556777889999999999988887888543
No 154
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=26.22 E-value=1.6e+02 Score=23.49 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=26.5
Q ss_pred ceEEEEeCCCCchhhH---HHHHHHHHHHHhhCCCcEEEEecccCC
Q 032168 20 TYVVLVATGSFNPPTF---MHLRMFELARDTLNSEGYCVIGGYMSP 62 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~---GHl~l~~~a~~~~~~d~v~vvp~~~~p 62 (146)
-.+++ .||.++|-+. |+.+ ..+++.+..|...+-.+.+++
T Consensus 136 ~~v~l-~GG~~~~~~~~~~G~~a--~~~l~~~~~D~afi~~~gi~~ 178 (256)
T PRK10434 136 QTILM-PGGTFRKKSASFHGQLA--ENAFEHFTFDKLFIGTDGIDL 178 (256)
T ss_pred CEEEE-ECCEEeCCCCeEECHHH--HHHHHhCcCCEEEEcCceecC
Confidence 36666 4999999864 5544 466677777777655444444
No 155
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=25.92 E-value=47 Score=27.91 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=36.4
Q ss_pred hhhhcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 8 EKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 8 ~~~~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
.+++|-++...++-+|=+ +.+++..+=+.+.++..+++++++.+|+|+
T Consensus 41 ~~v~rlL~~Ar~~GiV~I---~i~~~~~~~~~Le~~L~~~fgL~~a~VVp~ 88 (321)
T COG2390 41 ATVSRLLAKAREEGIVKI---SINSPVEGCLELEQQLKERFGLKEAIVVPS 88 (321)
T ss_pred HHHHHHHHHHHHCCeEEE---EeCCCCcchHHHHHHHHHhcCCCeEEEEcC
Confidence 345666665555555554 566777888889999999999999999986
No 156
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=25.59 E-value=3e+02 Score=20.78 Aligned_cols=32 Identities=9% Similarity=0.173 Sum_probs=22.3
Q ss_pred CCccchHHHHHHHHHHcCCCCeeeeeccchHHH
Q 032168 102 SGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF 134 (146)
Q Consensus 102 ~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l 134 (146)
....-|.++|....+.. +..|+++..|.+.++
T Consensus 84 ~~~~gt~~al~~~~~~i-~~d~lv~~~D~i~~~ 115 (214)
T cd04198 84 DEDMGTADSLRHIRKKI-KKDFLVLSCDLITDL 115 (214)
T ss_pred CCCcChHHHHHHHHhhc-CCCEEEEeCcccccc
Confidence 44556888888888765 345777788876655
No 157
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=25.52 E-value=51 Score=30.72 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=25.7
Q ss_pred CCcceEEEEeCC--CCchhhHHHHHH------HHHHHHhhCCCcEEEEec
Q 032168 17 QGKTYVVLVATG--SFNPPTFMHLRM------FELARDTLNSEGYCVIGG 58 (146)
Q Consensus 17 ~~k~~i~llfGG--SFnP~H~GHl~l------~~~a~~~~~~d~v~vvp~ 58 (146)
....++.++.|| -+|++|.||..- +.+.++..+ -+|.+|-+
T Consensus 244 ~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~G-y~V~fV~N 292 (699)
T PRK14535 244 IDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECG-YPLTYVRN 292 (699)
T ss_pred CCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcC-CceEEEeC
Confidence 334556666666 599999999875 344445544 35666543
No 158
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=25.38 E-value=3.9e+02 Score=22.11 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCeEEec-ccccCCCccchHHHH----HHHHHHcCCCCeeeeecc
Q 032168 70 RGLISAEHRINLCNLACKSSDFIMVDP-WEANQSGYQRTLTVL----SRVKNFLIEAGLISTGMD 129 (146)
Q Consensus 70 ~~~~~~~~R~~Ml~lai~~~~~i~v~~-~E~~~~~~~yT~~tl----~~l~~~~p~~~~~liG~D 129 (146)
+.-....-|..|.+++-..+=++++|. +.....+ .|++++ +.+.+.++-.+ ++-|||
T Consensus 175 ~~~~~~~w~~~m~~la~~pNv~~KlSG~~~~~~~~--w~~~~v~p~~e~~i~~fg~dR-~vfGSd 236 (279)
T COG3618 175 KINLEDPWKAALARLARRPNVWAKLSGVYAYSDES--WTVEDVRPYVEELIELFGWDR-FVFGSD 236 (279)
T ss_pred cccccCHHHHHHHHHHhCCCeEEEEeeecccccCC--CCHHHHHHHHHHHHHhcCccc-eEecCC
Confidence 344556789999999888888888886 4443333 566665 55667777666 677887
No 159
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=25.20 E-value=2e+02 Score=25.62 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCe-eeeeccchHH
Q 032168 78 RINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGL-ISTGMDHMQK 133 (146)
Q Consensus 78 R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~ 133 (146)
=.+-++++-+..|.+.+.|+. -.-..-++.++.+++..|+.++ +|-|.|-+..
T Consensus 37 G~eAleli~e~~pDiviTDI~---MP~mdGLdLI~~ike~~p~~~~IILSGy~eFeY 90 (475)
T COG4753 37 GKEALELIQETQPDIVITDIN---MPGMDGLDLIKAIKEQSPDTEFIILSGYDEFEY 90 (475)
T ss_pred HHHHHHHHHhcCCCEEEEecC---CCCCcHHHHHHHHHHhCCCceEEEEeccchhHH
Confidence 344566777788999998763 3445789999999999999998 7789887654
No 160
>CHL00163 ycf65 putative ribosomal protein 3; Validated
Probab=24.97 E-value=69 Score=22.46 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCC
Q 032168 70 RGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAG 122 (146)
Q Consensus 70 ~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~ 122 (146)
+..++..+|+.++..+.+- |+-|..+.. . ..+..++.++|++.
T Consensus 52 K~WIs~~~~i~lLN~~Tei-----IN~Wqe~~~-~----~~~~e~~~kFp~~~ 94 (99)
T CHL00163 52 KPWISEDERIEILNKTTEI-----INYWQENKK-K----YSLSEAQSKFPDFI 94 (99)
T ss_pred CCCCCHHHHHHHHHHHHHH-----HHHHHHccC-C----CchHHHHhcCCCeE
Confidence 4578889999998887765 334433211 1 45678888888655
No 161
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=24.85 E-value=3.1e+02 Score=22.70 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=22.9
Q ss_pred cEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 032168 52 GYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (146)
Q Consensus 52 ~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~ 88 (146)
.++++|+..+|+. ...|.++|.++++.+-+.
T Consensus 174 ~~~i~~~p~NPTG------~~~s~~~~~~l~~~a~~~ 204 (396)
T PRK09257 174 VVLLHGCCHNPTG------ADLTPEQWDELAELLKER 204 (396)
T ss_pred EEEEeCCCCCCCC------CCCCHHHHHHHHHHHHhC
Confidence 4666777777764 468889999999887554
No 162
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=24.84 E-value=2.4e+02 Score=22.68 Aligned_cols=33 Identities=21% Similarity=0.110 Sum_probs=20.1
Q ss_pred CCCchhhHHHHHHHHHHHHhhC--CCcEEEEeccc
Q 032168 28 GSFNPPTFMHLRMFELARDTLN--SEGYCVIGGYM 60 (146)
Q Consensus 28 GSFnP~H~GHl~l~~~a~~~~~--~d~v~vvp~~~ 60 (146)
=|-+.+|.||+-.+..+....+ .+-+.+|....
T Consensus 9 PTg~~lHLG~~~~~~~~~~lq~~g~~~~ilI~D~~ 43 (269)
T cd00805 9 PTAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDAT 43 (269)
T ss_pred CCCCcccHHHHHHHHHHHHHHHCCCeEEEEECCCe
Confidence 3556799999987776655443 22344555543
No 163
>PF04522 DUF585: Protein of unknown function (DUF585); InterPro: IPR007610 This region represents the N-termini of Broad bean mottle virus, Gp1 (2a protein), and is always found N-terminal to a predicted RNA dependent RNA polymerase region (IPR001788 from INTERPRO).; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=24.76 E-value=36 Score=27.43 Aligned_cols=13 Identities=38% Similarity=0.812 Sum_probs=9.5
Q ss_pred ceEEEEeCCCCchhh
Q 032168 20 TYVVLVATGSFNPPT 34 (146)
Q Consensus 20 ~~i~llfGGSFnP~H 34 (146)
+++++ ||+|+||-
T Consensus 62 kPl~i--gG~~ePpf 74 (248)
T PF04522_consen 62 KPLVI--GGSYEPPF 74 (248)
T ss_pred cceee--cCccCCch
Confidence 34444 99999994
No 164
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=24.58 E-value=1.4e+02 Score=23.13 Aligned_cols=44 Identities=9% Similarity=0.079 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCC
Q 032168 73 ISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAG 122 (146)
Q Consensus 73 ~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~ 122 (146)
.+.-+=++|+...+.. ++=+...+...-.+.|.+.+|+.||+..
T Consensus 73 M~i~ec~ell~~~vDE------SDPDlDepni~Ha~QtAE~iR~~~Pd~d 116 (204)
T KOG1573|consen 73 MTIWECCELLNEVVDE------SDPDLDEPNIQHALQTAEAIRKDYPDED 116 (204)
T ss_pred eeHHHHHHHHHhhhcc------cCCCCchHHHHHHHHHHHHHHHhCCCcc
Confidence 4455666676665543 2223334566678999999999999998
No 165
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=24.07 E-value=79 Score=25.35 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=20.7
Q ss_pred CCccchHHHHHHHHHHcCCCCe-eeee
Q 032168 102 SGYQRTLTVLSRVKNFLIEAGL-ISTG 127 (146)
Q Consensus 102 ~~~~yT~~tl~~l~~~~p~~~~-~liG 127 (146)
+...-|.-+++.||+.||++++ +++.
T Consensus 11 GD~vl~~p~l~~Lr~~~P~a~I~~l~~ 37 (319)
T TIGR02193 11 GDVIHTLPALTDIKRALPDVEIDWVVE 37 (319)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 3445677889999999999999 7763
No 166
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=23.95 E-value=44 Score=29.04 Aligned_cols=37 Identities=5% Similarity=0.061 Sum_probs=21.9
Q ss_pred eEEEEeCC--CCchhhHHHHHH------HHHHHHhhCCCcEEEEec
Q 032168 21 YVVLVATG--SFNPPTFMHLRM------FELARDTLNSEGYCVIGG 58 (146)
Q Consensus 21 ~i~llfGG--SFnP~H~GHl~l------~~~a~~~~~~d~v~vvp~ 58 (146)
++.++.|| -+|++|.||+.- +.+.++..+ .+|.+|-+
T Consensus 36 ~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G-~~V~fV~n 80 (411)
T TIGR03447 36 EAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAG-HRVHYVQN 80 (411)
T ss_pred cceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcC-CceEEeeC
Confidence 34444444 479999999875 333444444 35666643
No 167
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=23.85 E-value=23 Score=27.35 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=13.1
Q ss_pred eeeeccchHHH--HHHHHHH
Q 032168 124 ISTGMDHMQKF--WCDLYTQ 141 (146)
Q Consensus 124 ~liG~D~l~~l--W~~~~~~ 141 (146)
.++|+|+...+ ...+.+.
T Consensus 163 ~v~g~~~~~~~~~~~~~~~~ 182 (212)
T cd00671 163 YVVGADHHGHFKRLFAALEL 182 (212)
T ss_pred EEECCCHHHHHHHHHHHHHH
Confidence 58899988887 6555544
No 168
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=23.82 E-value=30 Score=27.56 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=15.0
Q ss_pred CCCCchhhH---------HHHHHHHHHHHhhCC
Q 032168 27 TGSFNPPTF---------MHLRMFELARDTLNS 50 (146)
Q Consensus 27 GGSFnP~H~---------GHl~l~~~a~~~~~~ 50 (146)
.|-|||+|. |-+ +...++.+.++
T Consensus 29 AgDFNPIHD~DaKRFCVPGDL-LFalvL~~~Gl 60 (218)
T PF12119_consen 29 AGDFNPIHDPDAKRFCVPGDL-LFALVLAKYGL 60 (218)
T ss_pred ccCCCccCCCCCccccCccHH-HHHHHHHhcCc
Confidence 689999995 443 34445555665
No 169
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=23.72 E-value=2e+02 Score=24.95 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCe
Q 032168 76 EHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGL 123 (146)
Q Consensus 76 ~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~ 123 (146)
.-|-++++.++++.|.+-|. -+.|.+++...+++|+..|+..+
T Consensus 72 k~~~~~~~~i~~~kpD~~i~-----IDsPdFnl~vak~lrk~~p~i~i 114 (381)
T COG0763 72 KIRRELVRYILANKPDVLIL-----IDSPDFNLRVAKKLRKAGPKIKI 114 (381)
T ss_pred HHHHHHHHHHHhcCCCEEEE-----eCCCCCchHHHHHHHHhCCCCCe
Confidence 35667888888888876554 45788999999999999999886
No 170
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.56 E-value=1.4e+02 Score=25.76 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=35.4
Q ss_pred cCCCCCHHHHHHHHHHHhcCC--CCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccch
Q 032168 69 KRGLISAEHRINLCNLACKSS--DFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHM 131 (146)
Q Consensus 69 k~~~~~~~~R~~Ml~lai~~~--~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l 131 (146)
|.+.++.+++...-+...++. .+|.|..+..... ....++.-+.+++..| |.|+|++..
T Consensus 167 KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~~-d~~~~~~~~~l~~~~P---FAIigs~~~ 227 (366)
T KOG2655|consen 167 KADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDES-DEELKEEEQDLKSSIP---FAIIGSNTE 227 (366)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCcc-hhhhHHHHHHHhhcCC---eEEEecCce
Confidence 455677777666555544442 3566666554433 3345566777777655 468888764
No 171
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=23.52 E-value=50 Score=25.48 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCCCeeeeeccchHH
Q 032168 110 VLSRVKNFLIEAGLISTGMDHMQK 133 (146)
Q Consensus 110 tl~~l~~~~p~~~~~liG~D~l~~ 133 (146)
=|+..++.||++.+=|+|.|+..+
T Consensus 141 Ei~eC~kayP~~yIRiigFDn~rq 164 (176)
T PLN02289 141 ELEEAKKAYPNAFIRIIGFDNTRQ 164 (176)
T ss_pred HHHHHHHHCCcceEEEEEEECCCC
Confidence 457778999998877899998653
No 172
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=23.44 E-value=93 Score=24.48 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=21.7
Q ss_pred CCccchHHHHHHHHHHcCCCCe-eeeecc
Q 032168 102 SGYQRTLTVLSRVKNFLIEAGL-ISTGMD 129 (146)
Q Consensus 102 ~~~~yT~~tl~~l~~~~p~~~~-~liG~D 129 (146)
+....+.-.++.+++.||+.++ +++.++
T Consensus 11 GD~i~~~p~l~~Lk~~~P~~~I~~l~~~~ 39 (279)
T cd03789 11 GDVVLATPLLRALKARYPDARITVLAPPW 39 (279)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEChh
Confidence 3444577788999999999999 777654
No 173
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.40 E-value=4.2e+02 Score=21.79 Aligned_cols=123 Identities=15% Similarity=0.070 Sum_probs=62.4
Q ss_pred CChhhhhcccccCCc-ceEEEEeCCCCchhhHHH--HHHHHHHHHhhCCCcEEEEecccCCCCcccc--cCCCCCHHHHH
Q 032168 5 LPLEKLSLESKTQGK-TYVVLVATGSFNPPTFMH--LRMFELARDTLNSEGYCVIGGYMSPVNDAYK--KRGLISAEHRI 79 (146)
Q Consensus 5 ~~~~~~~~~~~~~~k-~~i~llfGGSFnP~H~GH--l~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~--k~~~~~~~~R~ 79 (146)
||=+.+..+++..=+ +.++++ .++..|++.-- +.++..|++..+.++|.+|--|+....+.-. ....++...-.
T Consensus 21 F~DGE~~vri~~~v~g~~v~ii-~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~va 99 (304)
T PRK03092 21 FANGEIYVRFEESVRGCDAFVL-QSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPYARQDKKHRGREPISARLVA 99 (304)
T ss_pred CCCCCEEEEECCCCCCCEEEEE-eCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEecccccccccccCCCCCccHHHHH
Confidence 444555455542222 345554 66666765443 4455666777777788655446655543211 12367888888
Q ss_pred HHHHHHhcCCCCe-EEeccccc-C---CCc---cchHH-HHHHHHHHcCCCCeeeeeccc
Q 032168 80 NLCNLACKSSDFI-MVDPWEAN-Q---SGY---QRTLT-VLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 80 ~Ml~lai~~~~~i-~v~~~E~~-~---~~~---~yT~~-tl~~l~~~~p~~~~~liG~D~ 130 (146)
+|++.+-- +++ .++--... + +.+ .+... ..+++++.+...++.++|-|.
T Consensus 100 ~lL~~~g~--d~vitvD~H~~~~~~~f~~p~~~l~~~~~la~~i~~~~~~~~~vvVspd~ 157 (304)
T PRK03092 100 DLFKTAGA--DRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRDKYDLDNVTVVSPDA 157 (304)
T ss_pred HHHHhcCC--CeEEEEecChHHHHhhcCCCeeeEechHHHHHHHHHhcCCCCcEEEEecC
Confidence 88876421 222 12111100 1 111 22322 356776666555666777663
No 174
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=23.36 E-value=1.9e+02 Score=17.72 Aligned_cols=49 Identities=12% Similarity=0.031 Sum_probs=23.7
Q ss_pred CChhhhhcc---cccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecc
Q 032168 5 LPLEKLSLE---SKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGY 59 (146)
Q Consensus 5 ~~~~~~~~~---~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~ 59 (146)
+|...+... ...+...++++ ++++ -+.+ ..+...+...+.+++.++.+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~vv~-~c~~---~~~a--~~~~~~l~~~G~~~v~~l~gG 84 (89)
T cd00158 33 IPLSELEERAALLELDKDKPIVV-YCRS---GNRS--ARAAKLLRKAGGTNVYNLEGG 84 (89)
T ss_pred cchHHHhhHHHhhccCCCCeEEE-EeCC---CchH--HHHHHHHHHhCcccEEEecCC
Confidence 455555443 22334456666 5766 1122 223344455566677666543
No 175
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=23.25 E-value=2.9e+02 Score=23.25 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=21.2
Q ss_pred EEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 032168 53 YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (146)
Q Consensus 53 v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~ 88 (146)
++++|+..+|+. ...|.+.|-+++++|-+.
T Consensus 215 i~~~p~p~NPTG------~~~s~~~~~~l~~la~~~ 244 (431)
T PRK15481 215 VILTPRAHNPTG------CSLSARRAAALRNLLARY 244 (431)
T ss_pred EEECCCCCCCCC------ccCCHHHHHHHHHHHHhc
Confidence 444556666654 568889999999987655
No 176
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=23.17 E-value=2.1e+02 Score=21.14 Aligned_cols=43 Identities=14% Similarity=-0.048 Sum_probs=28.1
Q ss_pred cCCcceEEEEeCCCCchh-hHHHHHHHHHHHHhhCCC----cEEEEecc
Q 032168 16 TQGKTYVVLVATGSFNPP-TFMHLRMFELARDTLNSE----GYCVIGGY 59 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~-H~GHl~l~~~a~~~~~~d----~v~vvp~~ 59 (146)
+.+..|++++ -+.||.- +..=+.-+...++..+.+ .++.|||.
T Consensus 4 ~~~~~ri~IV-~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa 51 (141)
T PLN02404 4 DGEGLRFGVV-VARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPGS 51 (141)
T ss_pred CCCCCEEEEE-EecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcH
Confidence 3455788887 8999986 555556666666666653 34456663
No 177
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=22.95 E-value=2.6e+02 Score=22.64 Aligned_cols=62 Identities=19% Similarity=0.071 Sum_probs=32.2
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC
Q 032168 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD 90 (146)
Q Consensus 22 i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~ 90 (146)
|+++..+ ..|+....+.-+...++.. ++.|.. .|+-..-.....-+.++|.+-+..|+.+..
T Consensus 1 I~ivaPS-~~~~~~~~l~~~~~~L~~~---G~~v~~---~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~ 62 (284)
T PF02016_consen 1 IGIVAPS-LSPIDPERLERGIKRLESW---GFKVVV---GPHVFKRDGYLAGSDEERAEDLNEAFADPE 62 (284)
T ss_dssp EEEE-SS-HHHHCHHHHHHHHHHHHHT---TEEEEE----TTTTS-BTTBSS-HHHHHHHHHHHHHSTT
T ss_pred CEEEeCC-CCccCHHHHHHHHHHHHhC---CCEEEE---CCcccccCCCcCCCHHHHHHHHHHHhcCCC
Confidence 3454344 3445555555555555554 454442 222110011235789999999999998843
No 178
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=22.70 E-value=5e+02 Score=22.41 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=24.9
Q ss_pred ceEEEEeC--CCCchhhHHHHHHHHHHHHhhC--CCcEEEEecccCCC
Q 032168 20 TYVVLVAT--GSFNPPTFMHLRMFELARDTLN--SEGYCVIGGYMSPV 63 (146)
Q Consensus 20 ~~i~llfG--GSFnP~H~GHl~l~~~a~~~~~--~d~v~vvp~~~~p~ 63 (146)
+++.++.| =|-+.+|.||+-.+..++..-. .+-+.++++...-.
T Consensus 32 ~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~~~~~ligd~ta~i 79 (410)
T PRK13354 32 KPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHRPVILIGGFTGKI 79 (410)
T ss_pred CCcEEEEcccCCCCCcchhhHHHHHHHHHHHHcCCeEEEEEccccccc
Confidence 44455323 2444589999877766654432 33456676655433
No 179
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=22.53 E-value=68 Score=21.59 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=18.3
Q ss_pred cccCCCccchHHHH-HHHHHHcCCCC
Q 032168 98 EANQSGYQRTLTVL-SRVKNFLIEAG 122 (146)
Q Consensus 98 E~~~~~~~yT~~tl-~~l~~~~p~~~ 122 (146)
+.++.+.+-|.++| ++|.+.||+..
T Consensus 22 dln~~~~~at~E~l~~~L~~~yp~i~ 47 (80)
T PF10264_consen 22 DLNAAGQPATQETLREHLRKHYPGIA 47 (80)
T ss_pred HHhccCCcchHHHHHHHHHHhCCCCC
Confidence 44566777788876 78889998754
No 180
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=22.23 E-value=4.6e+02 Score=21.77 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=15.7
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHHHHhhC
Q 032168 21 YVVLVATGSFNPPTFMHLRMFELARDTLN 49 (146)
Q Consensus 21 ~i~llfGGSFnP~H~GHl~l~~~a~~~~~ 49 (146)
+.+.+-|||++=....++..+..+...+.
T Consensus 53 ~~i~~gGGtps~l~~~~l~~L~~~i~~~~ 81 (374)
T PRK05799 53 KSIFIGGGTPTYLSLEALEILKETIKKLN 81 (374)
T ss_pred eEEEECCCcccCCCHHHHHHHHHHHHhCC
Confidence 34554577777445556655544444444
No 181
>PLN02946 cysteine-tRNA ligase
Probab=22.21 E-value=59 Score=29.43 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=26.2
Q ss_pred cCCcceEEEEeCC--CCchhhHHHHHH------HHHHHHhhCCCcEEEEec
Q 032168 16 TQGKTYVVLVATG--SFNPPTFMHLRM------FELARDTLNSEGYCVIGG 58 (146)
Q Consensus 16 ~~~k~~i~llfGG--SFnP~H~GHl~l------~~~a~~~~~~d~v~vvp~ 58 (146)
+....+|.++.|| -+|++|.||..- +.+.+++.+ .+|.+|-+
T Consensus 75 P~~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~G-y~V~~V~n 124 (557)
T PLN02946 75 PKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLG-YEVRYVRN 124 (557)
T ss_pred cCCCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcC-CcEEEEEC
Confidence 3344556666666 599999999875 444455555 35665543
No 182
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=22.13 E-value=78 Score=25.57 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=21.4
Q ss_pred CCccchHHHHHHHHHHcCCCCe-eeeec
Q 032168 102 SGYQRTLTVLSRVKNFLIEAGL-ISTGM 128 (146)
Q Consensus 102 ~~~~yT~~tl~~l~~~~p~~~~-~liG~ 128 (146)
++..-|.-+++.+|+.||++++ +++..
T Consensus 12 GD~v~~~p~~~~lk~~~P~a~I~~l~~~ 39 (322)
T PRK10964 12 GDVLHTLPALTDAQQAIPGIQFDWVVEE 39 (322)
T ss_pred HHHHhHHHHHHHHHHhCCCCEEEEEECH
Confidence 3445677889999999999999 88743
No 183
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.80 E-value=3.7e+02 Score=20.59 Aligned_cols=60 Identities=13% Similarity=-0.086 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccchH
Q 032168 73 ISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQ 132 (146)
Q Consensus 73 ~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~ 132 (146)
.+..+|.+=.+.+++..+.+.+...........-.++.++.+.+..|+.+.++...|.+.
T Consensus 136 ~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~a 195 (272)
T cd06313 136 TGAQGRAQGFNDVIKKYPDIEVVDEQPANWDVSKAARIWETWLTKYPQLDGAFCHNDSMA 195 (272)
T ss_pred cchhHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcHH
Confidence 345678888888888766544332111111222356677776666666554555555543
No 184
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=21.75 E-value=1.2e+02 Score=24.42 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=28.5
Q ss_pred CCCCchhhHHHHHHH----HHHHHhh---CCCcEEEEecccCCCC
Q 032168 27 TGSFNPPTFMHLRMF----ELARDTL---NSEGYCVIGGYMSPVN 64 (146)
Q Consensus 27 GGSFnP~H~GHl~l~----~~a~~~~---~~d~v~vvp~~~~p~~ 64 (146)
-++|+|+..|++++. +.+.+.+ +.+++.++|-+++...
T Consensus 31 ~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlfl~~g~ 75 (245)
T COG2138 31 RGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLFLAAGY 75 (245)
T ss_pred hcCCccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehhhccCc
Confidence 367899999999997 5555555 4567999998876543
No 185
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=21.72 E-value=81 Score=27.53 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=16.8
Q ss_pred HHHHHHHHcCCCCeeeeecc
Q 032168 110 VLSRVKNFLIEAGLISTGMD 129 (146)
Q Consensus 110 tl~~l~~~~p~~~~~liG~D 129 (146)
.++|++++||.++++.+|.-
T Consensus 187 ~v~~i~~~~P~a~l~avG~S 206 (409)
T KOG1838|consen 187 VVNHIKKRYPQAPLFAVGFS 206 (409)
T ss_pred HHHHHHHhCCCCceEEEEec
Confidence 78999999999998776544
No 186
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=21.57 E-value=3.2e+02 Score=20.79 Aligned_cols=52 Identities=4% Similarity=-0.001 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEeccc--ccCCCccchHHHHHHHHHHcCCCCe-eeeeccc
Q 032168 73 ISAEHRINLCNLACKSSDFIMVDPWE--ANQSGYQRTLTVLSRVKNFLIEAGL-ISTGMDH 130 (146)
Q Consensus 73 ~~~~~R~~Ml~lai~~~~~i~v~~~E--~~~~~~~yT~~tl~~l~~~~p~~~~-~liG~D~ 130 (146)
.+.++-++++ -+..|.+-+-|.+ ...+ -..+.++++++.+|+.++ ++.+.|.
T Consensus 34 ~~~~~~~~~~---~~~~pDlvLlDl~~~l~~~---~g~~~i~~i~~~~p~~~iivlt~~~~ 88 (207)
T PRK15411 34 ETVDDLAIAC---DSLRPSVVFINEDCFIHDA---SNSQRIKQIINQHPNTLFIVFMAIAN 88 (207)
T ss_pred CCHHHHHHHH---hccCCCEEEEeCcccCCCC---ChHHHHHHHHHHCCCCeEEEEECCCc
Confidence 3344444433 3345787777754 3222 134799999999999998 6656554
No 187
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=21.43 E-value=61 Score=24.05 Aligned_cols=24 Identities=4% Similarity=0.016 Sum_probs=18.7
Q ss_pred HHHHHHHHcCCCCeeeeeccchHH
Q 032168 110 VLSRVKNFLIEAGLISTGMDHMQK 133 (146)
Q Consensus 110 tl~~l~~~~p~~~~~liG~D~l~~ 133 (146)
=|+..++.||++.+=|+|.|+...
T Consensus 67 Ei~~CrkayP~~yIRl~gFDn~rq 90 (138)
T CHL00130 67 EINECRKQKPNGYIKVNAFDASRG 90 (138)
T ss_pred HHHHHHHHCCCcEEEEEEeeCCCc
Confidence 456777999998877889998654
No 188
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=21.41 E-value=2.7e+02 Score=22.43 Aligned_cols=48 Identities=27% Similarity=0.105 Sum_probs=27.4
Q ss_pred HHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC
Q 032168 39 RMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS 89 (146)
Q Consensus 39 ~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~ 89 (146)
..++.+.+.++.-++.|+.+ |+-..-......+.++|.+.+..|+.+.
T Consensus 14 ~~~~~~~~~L~~~G~~v~~~---~~~~~~~~~~a~s~~~Ra~dL~~a~~d~ 61 (282)
T cd07025 14 ERLERAIARLESLGLEVVVG---PHVLARDGYLAGTDEERAADLNAAFADP 61 (282)
T ss_pred HHHHHHHHHHHhCCCEEEec---cchhhhcCccCCCHHHHHHHHHHHhhCC
Confidence 55556666654334544422 2110000123578999999999999874
No 189
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=21.38 E-value=1.2e+02 Score=23.89 Aligned_cols=40 Identities=5% Similarity=-0.033 Sum_probs=26.8
Q ss_pred ceEEEEeCCCCchhh---HHHHHHHHHHHHhhCCCcEEEEecccCC
Q 032168 20 TYVVLVATGSFNPPT---FMHLRMFELARDTLNSEGYCVIGGYMSP 62 (146)
Q Consensus 20 ~~i~llfGGSFnP~H---~GHl~l~~~a~~~~~~d~v~vvp~~~~p 62 (146)
-.+++ .||.++|.+ .|+.. ...++.+..|...+-.+.+++
T Consensus 136 ~~vil-~GG~~~~~~~~~~G~~a--~~~l~~~~~d~afis~~gi~~ 178 (240)
T PRK10411 136 IQLIS-SGGTLERKYGCYVNPSL--ISQLKSLEIDLFIFSCEGIDS 178 (240)
T ss_pred CEEEE-ECCEEeCCCCceECHHH--HHHHHhcCCCEEEEeceeECC
Confidence 45666 599999986 45443 556677777877665555554
No 190
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=21.36 E-value=2.2e+02 Score=19.74 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=24.3
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEE
Q 032168 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVI 56 (146)
Q Consensus 21 ~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vv 56 (146)
.++.++.+++.|+=.-++.-++.+.+.++-+++.|+
T Consensus 31 ~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi 66 (149)
T cd03018 31 VVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVL 66 (149)
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEE
Confidence 344444699999966677777777777754456655
No 191
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=21.34 E-value=2e+02 Score=19.45 Aligned_cols=50 Identities=14% Similarity=0.041 Sum_probs=27.3
Q ss_pred CCChhhhhcccc--cC-CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecc
Q 032168 4 PLPLEKLSLESK--TQ-GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGY 59 (146)
Q Consensus 4 ~~~~~~~~~~~~--~~-~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~ 59 (146)
.+|...+...++ .+ +..++++ +|.+-+ -...+..++..++.+.+.+.+|+
T Consensus 40 nip~~~l~~~l~~~~~~~~~~vvl-yC~~G~-----rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 40 NIPLKEIKEHIATAVPDKNDTVKL-YCNAGR-----QSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred ECCHHHHHHHHHHhCCCCCCeEEE-EeCCCH-----HHHHHHHHHHHcCCCeEEecCCH
Confidence 456666655553 22 3345555 576631 22334455666777778766553
No 192
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.29 E-value=85 Score=22.77 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCCCeee--eeccchHHH---HHHHHHH
Q 032168 108 LTVLSRVKNFLIEAGLIS--TGMDHMQKF---WCDLYTQ 141 (146)
Q Consensus 108 ~~tl~~l~~~~p~~~~~l--iG~D~l~~l---W~~~~~~ 141 (146)
-..+.++++.+|.+.+.+ .+.|.+..| |..+.++
T Consensus 69 ~~aI~rIr~IHPPAHiIVIs~r~dvy~el~~~fgkl~el 107 (125)
T COG1844 69 SKAIGRIRKIHPPAHIIVISPRHDVYKELLRLFGKLPEL 107 (125)
T ss_pred HHHHHHHHhcCCCceEEEeCCCchHHHHHHHHhcccHhh
Confidence 357889999999999844 388998888 8776654
No 193
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=21.25 E-value=37 Score=23.96 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=8.4
Q ss_pred EEEeCCCCchhh
Q 032168 23 VLVATGSFNPPT 34 (146)
Q Consensus 23 ~llfGGSFnP~H 34 (146)
+.+ ||||||+-
T Consensus 50 aAi-GGTfd~~~ 60 (102)
T PF14034_consen 50 AAI-GGTFDTFR 60 (102)
T ss_pred HHH-hcCchHHH
Confidence 444 99999974
No 194
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=21.25 E-value=1e+02 Score=25.19 Aligned_cols=28 Identities=7% Similarity=-0.039 Sum_probs=22.0
Q ss_pred CCccchHHHHHHHHHHcCCCCe-eeeecc
Q 032168 102 SGYQRTLTVLSRVKNFLIEAGL-ISTGMD 129 (146)
Q Consensus 102 ~~~~yT~~tl~~l~~~~p~~~~-~liG~D 129 (146)
+...-|.-.++.||+.||++++ ++++..
T Consensus 12 GD~il~tP~l~~Lk~~~P~a~I~~l~~~~ 40 (348)
T PRK10916 12 GDMMMSQSLYRTLKARYPQAIIDVMAPAW 40 (348)
T ss_pred cHHHhHHHHHHHHHHHCCCCeEEEEechh
Confidence 3445677789999999999999 887544
No 195
>PTZ00056 glutathione peroxidase; Provisional
Probab=21.20 E-value=2.5e+02 Score=21.41 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=30.1
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|-+|..|+-...+-.+....+..+-+++.|+.
T Consensus 40 kvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvg 77 (199)
T PTZ00056 40 KVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILA 77 (199)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEE
Confidence 46777789999999998888888887777656677764
No 196
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=20.92 E-value=2e+02 Score=22.41 Aligned_cols=42 Identities=14% Similarity=0.069 Sum_probs=25.7
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
....+++++++||+.-+.+.+....++++-+.+...+..|+.
T Consensus 11 ~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~t 52 (205)
T COG1611 11 FIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVIT 52 (205)
T ss_pred ccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEe
Confidence 344567777666665566666777777776666544444443
No 197
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=20.89 E-value=4.4e+02 Score=21.04 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=52.8
Q ss_pred eCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCC-CHHHHHHHHHHHhcCC--CCeEEecccccCC
Q 032168 26 ATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLI-SAEHRINLCNLACKSS--DFIMVDPWEANQS 102 (146)
Q Consensus 26 fGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~-~~~~R~~Ml~lai~~~--~~i~v~~~E~~~~ 102 (146)
.|=+|||=|- +..++..++.+ |-|.+|. ++|-. .-+.+. +--+|++-++..+.+. ..++|+ +
T Consensus 112 aGv~lnP~Tp--~~~i~~~l~~v--D~VllMs--VnPGf---gGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVD------G 176 (220)
T COG0036 112 AGLVLNPATP--LEALEPVLDDV--DLVLLMS--VNPGF---GGQKFIPEVLEKIRELRAMIDERLDILIEVD------G 176 (220)
T ss_pred EEEEECCCCC--HHHHHHHHhhC--CEEEEEe--ECCCC---cccccCHHHHHHHHHHHHHhcccCCeEEEEe------C
Confidence 3456899873 56677777776 5666663 34432 233334 4678999999988862 123333 2
Q ss_pred CccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 103 GYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 103 ~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
|. +.+|+..+.+. ++++|++||=.
T Consensus 177 GI--~~~t~~~~~~A--Gad~~VaGSal 200 (220)
T COG0036 177 GI--NLETIKQLAAA--GADVFVAGSAL 200 (220)
T ss_pred Cc--CHHHHHHHHHc--CCCEEEEEEEE
Confidence 33 66777777755 55667887733
No 198
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=20.83 E-value=1.2e+02 Score=24.67 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=21.9
Q ss_pred CCccchHHHHHHHHHHcCCCCe-eeeec
Q 032168 102 SGYQRTLTVLSRVKNFLIEAGL-ISTGM 128 (146)
Q Consensus 102 ~~~~yT~~tl~~l~~~~p~~~~-~liG~ 128 (146)
+...-|.-+++.+|+.||++++ +++..
T Consensus 11 GD~vl~tp~l~~Lk~~~P~a~I~~l~~~ 38 (344)
T TIGR02201 11 GDMLLTTPVISSLKKNYPDAKIDVLLYQ 38 (344)
T ss_pred cceeeHHHHHHHHHHHCCCCEEEEEECc
Confidence 4556788899999999999999 77744
No 199
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.70 E-value=3.7e+02 Score=20.12 Aligned_cols=58 Identities=14% Similarity=0.019 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHhcCCC-CeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccch
Q 032168 74 SAEHRINLCNLACKSSD-FIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHM 131 (146)
Q Consensus 74 ~~~~R~~Ml~lai~~~~-~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l 131 (146)
...+|.+=.+.+++++. .+...............++.++.+-+.+|+.+.+++.+|..
T Consensus 130 ~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~ 188 (269)
T cd06288 130 AAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPTAIFCGNDRM 188 (269)
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCCEEEEeCcHH
Confidence 45678887777777653 11111000001112235566666666666555445555533
No 200
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=20.68 E-value=3.7e+02 Score=20.20 Aligned_cols=71 Identities=11% Similarity=0.059 Sum_probs=41.9
Q ss_pred HHHHHHHHhhCCC-cEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEec-ccccCCCccchHHHHHHHHH
Q 032168 39 RMFELARDTLNSE-GYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDP-WEANQSGYQRTLTVLSRVKN 116 (146)
Q Consensus 39 ~l~~~a~~~~~~d-~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~-~E~~~~~~~yT~~tl~~l~~ 116 (146)
.+++.+.+.++.+ ++.++.+ ........+|.+-.+.++++.+.+.+.. ++.......-..+.++.+-+
T Consensus 110 ~~a~~l~~~~~~~~~v~~~~~----------~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 179 (257)
T PF13407_consen 110 LAAEYLAEKLGAKGKVLILSG----------SPGNPNTQERLEGFRDALKEYPGVEIVDEYEYTDWDPEDARQAIENLLQ 179 (257)
T ss_dssp HHHHHHHHHHTTTEEEEEEES----------STTSHHHHHHHHHHHHHHHHCTTEEEEEEEEECTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCceEEeccC----------CCCchHHHHHHHHHHHHHhhcceeeeeeeeeccCCCHHHHHHHHHHhhh
Confidence 3456666666532 3444422 1233556789999999999877776654 22223444456666666666
Q ss_pred HcC
Q 032168 117 FLI 119 (146)
Q Consensus 117 ~~p 119 (146)
.+|
T Consensus 180 ~~~ 182 (257)
T PF13407_consen 180 ANP 182 (257)
T ss_dssp HTT
T ss_pred cCC
Confidence 665
No 201
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=20.15 E-value=2.9e+02 Score=18.75 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=29.3
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|-+|-+|+-...+.-++...+..+-+++.|+.
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~ 61 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIG 61 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEE
Confidence 56777788999999888888888888877655676664
Done!