Query 032168
Match_columns 146
No_of_seqs 122 out of 1109
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h05_A Uncharacterized protein 100.0 1.8E-35 6.2E-40 225.3 5.1 115 20-143 2-124 (177)
2 1yum_A 'probable nicotinate-nu 100.0 3.9E-32 1.3E-36 215.5 8.3 122 16-142 19-144 (242)
3 1nup_A FKSG76; NAD biosynthesi 100.0 9.4E-32 3.2E-36 214.1 9.1 123 20-143 6-158 (252)
4 1kqn_A Nmnat, nicotinamide mon 100.0 1.8E-31 6.1E-36 215.8 10.0 128 16-143 3-179 (279)
5 2h29_A Probable nicotinate-nuc 100.0 1.5E-31 5E-36 203.8 6.4 120 20-143 2-124 (189)
6 1kam_A Deamido-NAD(+), nicotin 100.0 1.7E-30 5.8E-35 198.7 11.1 120 20-143 7-129 (194)
7 1k4m_A NAMN adenylyltransferas 100.0 8.1E-30 2.8E-34 197.6 10.9 118 21-143 3-125 (213)
8 2qtr_A Nicotinate (nicotinamid 100.0 6.9E-30 2.4E-34 193.6 10.2 119 20-142 2-123 (189)
9 3f3m_A Phosphopantetheine aden 99.9 2.7E-24 9.4E-29 162.4 9.3 96 19-134 2-97 (168)
10 3nd5_A Phosphopantetheine aden 99.9 2.1E-23 7.3E-28 157.9 9.4 95 20-134 2-97 (171)
11 3nbk_A Phosphopantetheine aden 99.9 5.7E-22 1.9E-26 151.0 11.7 98 17-134 18-115 (177)
12 1qjc_A Phosphopantetheine aden 99.9 1.9E-22 6.5E-27 148.4 7.5 95 20-134 1-95 (158)
13 1o6b_A Phosphopantetheine aden 99.9 8.3E-22 2.8E-26 147.1 9.2 95 20-134 2-96 (169)
14 1vlh_A Phosphopantetheine aden 99.9 1.1E-21 3.8E-26 148.0 7.9 90 21-130 13-102 (173)
15 1od6_A PPAT, phosphopantethein 99.8 1.8E-21 6.2E-26 143.6 7.6 94 23-134 3-96 (160)
16 4f3r_A Phosphopantetheine aden 99.8 2.4E-20 8.1E-25 140.0 11.4 95 19-134 4-98 (162)
17 3k9w_A Phosphopantetheine aden 99.8 5.3E-20 1.8E-24 141.1 11.1 107 8-134 10-116 (187)
18 3nv7_A Phosphopantetheine aden 99.8 2.2E-18 7.4E-23 128.8 9.4 95 20-134 2-96 (157)
19 1jhd_A Sulfate adenylyltransfe 99.8 9.1E-19 3.1E-23 147.5 8.0 124 11-144 184-316 (396)
20 1f9a_A Hypothetical protein MJ 99.7 1.5E-17 5.3E-22 124.2 10.4 102 22-134 2-105 (168)
21 2qjt_B Nicotinamide-nucleotide 99.7 2.8E-17 9.5E-22 133.9 8.6 102 20-127 7-114 (352)
22 2b7l_A Glycerol-3-phosphate cy 99.7 1.7E-17 6E-22 119.0 6.4 95 20-130 1-95 (132)
23 1v47_A ATP sulfurylase; produc 99.7 1.7E-17 5.8E-22 137.8 6.9 122 11-144 147-277 (349)
24 1ej2_A Nicotinamide mononucleo 99.7 1.3E-16 4.6E-21 120.4 10.3 103 21-134 4-111 (181)
25 2qjo_A Bifunctional NMN adenyl 99.7 2.2E-17 7.7E-22 133.6 5.9 64 20-90 7-71 (341)
26 1coz_A Protein (glycerol-3-pho 99.7 3.8E-17 1.3E-21 116.7 5.5 93 20-130 1-95 (129)
27 1lw7_A Transcriptional regulat 99.7 4.4E-17 1.5E-21 134.2 4.9 82 20-105 2-88 (365)
28 3do8_A Phosphopantetheine aden 99.7 7.5E-17 2.6E-21 119.2 5.3 72 23-98 3-76 (148)
29 3glv_A Lipopolysaccharide core 99.3 6.4E-12 2.2E-16 91.6 6.1 94 20-130 2-95 (143)
30 3hl4_A Choline-phosphate cytid 99.2 1.2E-11 4.2E-16 97.6 4.4 75 17-94 73-147 (236)
31 3elb_A Ethanolamine-phosphate 99.0 6.4E-10 2.2E-14 92.0 6.4 94 20-129 198-295 (341)
32 3elb_A Ethanolamine-phosphate 98.9 1.7E-09 5.9E-14 89.4 5.1 72 17-93 4-75 (341)
33 2x0k_A Riboflavin biosynthesis 98.4 2.9E-07 9.8E-12 75.9 5.4 105 20-130 15-126 (338)
34 1r6x_A ATP:sulfate adenylyltra 98.2 8E-06 2.7E-10 68.7 9.3 108 12-131 180-292 (395)
35 1mrz_A Riboflavin kinase/FMN a 98.1 1.2E-06 4E-11 71.0 2.9 91 26-130 4-102 (293)
36 1g8f_A Sulfate adenylyltransfe 98.1 1.5E-05 5E-10 69.0 9.0 109 11-131 180-293 (511)
37 3gmi_A UPF0348 protein MJ0951; 97.8 5.9E-05 2E-09 62.6 7.4 72 18-97 50-122 (357)
38 2gks_A Bifunctional SAT/APS ki 97.7 0.00015 5.2E-09 62.9 9.6 102 16-129 160-267 (546)
39 3op1_A Macrolide-efflux protei 97.7 8.9E-05 3E-09 60.4 6.9 101 21-129 21-131 (308)
40 1m8p_A Sulfate adenylyltransfe 97.4 0.00061 2.1E-08 59.4 9.5 107 12-129 183-293 (573)
41 2ejc_A Pantoate--beta-alanine 97.0 0.00068 2.3E-08 54.5 4.5 62 19-85 21-85 (280)
42 3cr8_A Sulfate adenylyltranfer 96.8 0.013 4.3E-07 51.0 11.6 108 11-130 155-267 (552)
43 1x6v_B Bifunctional 3'-phospho 96.5 0.017 5.7E-07 51.1 10.2 107 14-130 407-524 (630)
44 3ag6_A Pantothenate synthetase 93.6 0.15 5E-06 41.0 6.2 59 20-85 23-86 (283)
45 1v8f_A Pantoate-beta-alanine l 91.7 0.56 1.9E-05 37.4 7.2 50 33-85 28-80 (276)
46 3inn_A Pantothenate synthetase 91.6 0.4 1.4E-05 39.0 6.4 61 18-85 41-106 (314)
47 3cov_A Pantothenate synthetase 90.5 0.51 1.7E-05 38.1 5.9 50 33-85 44-97 (301)
48 3uk2_A Pantothenate synthetase 88.6 0.51 1.7E-05 37.8 4.6 62 19-85 21-85 (283)
49 3q12_A Pantoate--beta-alanine 86.8 0.9 3.1E-05 36.4 5.0 62 18-85 23-88 (287)
50 3n8h_A Pantothenate synthetase 84.7 1 3.4E-05 35.8 4.3 63 18-85 22-87 (264)
51 3mxt_A Pantothenate synthetase 76.5 3.4 0.00012 33.0 4.8 62 18-85 23-87 (285)
52 3s99_A Basic membrane lipoprot 73.4 34 0.0012 27.4 10.3 99 9-126 11-116 (356)
53 3en0_A Cyanophycinase; serine 71.3 20 0.00068 28.4 8.1 100 16-134 23-125 (291)
54 3ksm_A ABC-type sugar transpor 64.3 33 0.0011 24.9 7.8 59 73-131 140-198 (276)
55 3l6u_A ABC-type sugar transpor 60.4 21 0.00073 26.3 6.1 102 19-131 89-206 (293)
56 1li5_A Cysrs, cysteinyl-tRNA s 55.7 10 0.00034 31.9 3.8 38 18-56 19-64 (461)
57 2ioy_A Periplasmic sugar-bindi 51.9 68 0.0023 23.5 8.0 84 38-131 110-194 (283)
58 3i12_A D-alanine-D-alanine lig 51.3 26 0.0009 27.8 5.5 43 18-61 2-44 (364)
59 3c8z_A Cysteinyl-tRNA syntheta 50.8 13 0.00045 30.5 3.7 39 19-58 37-83 (414)
60 4fu0_A D-alanine--D-alanine li 47.8 32 0.0011 27.1 5.5 44 18-62 2-45 (357)
61 3kfl_A Methionyl-tRNA syntheta 47.7 6 0.00021 33.9 1.2 49 8-58 10-71 (564)
62 3drn_A Peroxiredoxin, bacterio 46.5 34 0.0012 23.2 4.9 41 17-57 27-68 (161)
63 3k3p_A D-alanine--D-alanine li 45.6 34 0.0012 27.6 5.4 42 19-61 37-78 (383)
64 1gud_A ALBP, D-allose-binding 44.6 91 0.0031 23.0 7.4 83 39-131 120-204 (288)
65 3e5n_A D-alanine-D-alanine lig 44.5 38 0.0013 27.3 5.5 52 8-61 12-63 (386)
66 4fo5_A Thioredoxin-like protei 44.1 52 0.0018 21.5 5.5 38 20-57 33-70 (143)
67 4dlp_A Aminoacyl-tRNA syntheta 43.5 13 0.00045 31.4 2.7 32 8-40 10-47 (536)
68 4h86_A Peroxiredoxin type-2; o 42.8 23 0.00078 26.7 3.6 38 20-57 70-113 (199)
69 3kij_A Probable glutathione pe 42.2 59 0.002 22.4 5.7 40 20-59 39-78 (180)
70 3tvz_A Putative uncharacterize 42.0 16 0.00055 26.5 2.6 25 106-130 14-39 (172)
71 3ixr_A Bacterioferritin comigr 41.9 51 0.0017 23.0 5.3 40 17-57 50-90 (179)
72 2x7x_A Sensor protein; transfe 41.4 93 0.0032 23.4 7.1 83 39-131 116-199 (325)
73 2kwa_A Kinase A inhibitor; bac 40.9 66 0.0023 20.8 5.4 42 20-61 15-57 (101)
74 3sp1_A Cysteinyl-tRNA syntheta 40.6 41 0.0014 28.7 5.3 37 21-58 42-86 (501)
75 3tqo_A Cysteinyl-tRNA syntheta 40.5 24 0.00083 29.7 3.8 42 16-58 20-69 (462)
76 3lp8_A Phosphoribosylamine-gly 39.7 34 0.0012 28.1 4.5 45 8-58 10-54 (442)
77 1xvw_A Hypothetical protein RV 38.4 52 0.0018 21.9 4.8 41 17-57 34-75 (160)
78 3h99_A Methionyl-tRNA syntheta 37.8 25 0.00085 29.9 3.5 42 15-58 13-63 (560)
79 3erw_A Sporulation thiol-disul 37.6 79 0.0027 20.1 5.7 40 18-57 33-72 (145)
80 2v1m_A Glutathione peroxidase; 36.2 58 0.002 21.7 4.7 39 20-58 32-70 (169)
81 3fw2_A Thiol-disulfide oxidore 35.8 76 0.0026 20.8 5.2 39 19-57 33-74 (150)
82 3raz_A Thioredoxin-related pro 35.8 92 0.0032 20.4 5.7 39 19-57 24-62 (151)
83 4ae5_A Signal transduction pro 35.5 24 0.00082 25.7 2.6 25 106-130 9-34 (167)
84 3lor_A Thiol-disulfide isomera 35.1 70 0.0024 21.1 5.0 39 20-58 31-70 (160)
85 3eyt_A Uncharacterized protein 34.4 76 0.0026 20.9 5.1 40 20-59 29-69 (158)
86 3or5_A Thiol:disulfide interch 34.4 97 0.0033 20.4 5.6 38 20-57 35-72 (165)
87 3kcm_A Thioredoxin family prot 33.7 98 0.0034 20.1 5.7 39 19-57 28-66 (154)
88 2fn9_A Ribose ABC transporter, 33.4 1.4E+02 0.0047 21.7 8.4 58 74-131 145-202 (290)
89 1i5g_A Tryparedoxin II; electr 33.4 98 0.0034 20.0 5.6 39 19-57 28-67 (144)
90 2h3h_A Sugar ABC transporter, 33.3 1.5E+02 0.005 22.0 8.3 81 39-130 111-192 (313)
91 3gl3_A Putative thiol:disulfid 32.6 73 0.0025 20.7 4.7 39 19-57 28-66 (152)
92 1o8x_A Tryparedoxin, TRYX, TXN 32.5 1E+02 0.0035 20.0 5.5 39 19-57 28-67 (146)
93 3gkn_A Bacterioferritin comigr 32.4 58 0.002 21.8 4.2 40 17-57 34-74 (163)
94 3h75_A Periplasmic sugar-bindi 32.3 1.1E+02 0.0038 23.2 6.3 58 73-130 158-215 (350)
95 2lrn_A Thiol:disulfide interch 32.1 1E+02 0.0036 20.2 5.5 39 19-57 29-67 (152)
96 2rjo_A Twin-arginine transloca 31.9 1.3E+02 0.0044 22.6 6.5 83 38-130 123-207 (332)
97 3fj2_A Monooxygenase-like prot 31.8 30 0.001 25.6 2.7 25 106-130 28-53 (186)
98 1jfu_A Thiol:disulfide interch 31.8 91 0.0031 21.3 5.3 38 20-57 61-98 (186)
99 1o73_A Tryparedoxin; electron 31.4 1.1E+02 0.0036 19.8 5.6 39 19-57 28-67 (144)
100 2ywi_A Hypothetical conserved 31.2 73 0.0025 22.0 4.7 42 17-58 44-85 (196)
101 2pn8_A Peroxiredoxin-4; thiore 31.0 70 0.0024 23.1 4.7 38 20-57 49-87 (211)
102 3hdc_A Thioredoxin family prot 30.6 1.2E+02 0.004 20.1 7.0 39 20-58 42-80 (158)
103 1prx_A HORF6; peroxiredoxin, h 30.6 1.1E+02 0.0036 22.5 5.7 40 18-57 30-70 (224)
104 1e4e_A Vancomycin/teicoplanin 30.2 92 0.0032 24.1 5.5 43 19-62 3-45 (343)
105 3u5r_E Uncharacterized protein 29.4 96 0.0033 22.3 5.2 42 17-58 57-98 (218)
106 3fkf_A Thiol-disulfide oxidore 29.2 99 0.0034 19.8 4.8 39 19-57 33-72 (148)
107 1tp9_A Peroxiredoxin, PRX D (t 29.1 40 0.0014 23.1 2.9 37 20-56 36-75 (162)
108 2p31_A CL683, glutathione pero 28.9 86 0.0029 21.6 4.7 38 20-57 50-87 (181)
109 3ztl_A Thioredoxin peroxidase; 28.8 77 0.0026 23.0 4.6 38 20-57 70-108 (222)
110 3djh_A Macrophage migration in 28.5 20 0.00067 23.8 1.1 11 23-33 46-56 (114)
111 2obi_A PHGPX, GPX-4, phospholi 28.3 90 0.0031 21.5 4.7 38 20-57 48-85 (183)
112 2lrt_A Uncharacterized protein 28.1 79 0.0027 21.1 4.3 38 20-57 36-73 (152)
113 2gs3_A PHGPX, GPX-4, phospholi 28.0 91 0.0031 21.6 4.7 39 20-58 50-88 (185)
114 3hcz_A Possible thiol-disulfid 28.0 52 0.0018 21.2 3.2 39 19-57 31-69 (148)
115 3qhp_A Type 1 capsular polysac 27.5 46 0.0016 22.2 3.0 25 21-46 2-26 (166)
116 2bmx_A Alkyl hydroperoxidase C 27.3 92 0.0032 21.7 4.7 38 20-57 46-84 (195)
117 2p5q_A Glutathione peroxidase 27.1 96 0.0033 20.6 4.6 39 20-58 33-71 (170)
118 1xcc_A 1-Cys peroxiredoxin; un 27.1 1.1E+02 0.0037 22.4 5.1 42 17-58 29-71 (220)
119 2f8a_A Glutathione peroxidase 26.8 94 0.0032 22.4 4.7 38 20-57 48-85 (208)
120 3cmi_A Peroxiredoxin HYR1; thi 25.8 73 0.0025 21.6 3.8 38 20-58 33-70 (171)
121 1uul_A Tryparedoxin peroxidase 25.6 1E+02 0.0035 21.7 4.7 38 20-57 37-75 (202)
122 2zue_A Arginyl-tRNA synthetase 25.5 39 0.0013 29.5 2.7 22 18-40 117-141 (629)
123 2c0d_A Thioredoxin peroxidase 25.4 68 0.0023 23.5 3.7 38 20-57 57-95 (221)
124 2l5o_A Putative thioredoxin; s 25.3 1.3E+02 0.0044 19.5 4.9 38 20-57 29-66 (153)
125 2rli_A SCO2 protein homolog, m 25.2 1.2E+02 0.0039 20.2 4.7 43 20-62 27-74 (171)
126 1iq0_A Arginyl-tRNA synthetase 25.1 36 0.0012 29.3 2.4 20 21-40 104-125 (592)
127 1we0_A Alkyl hydroperoxide red 24.6 88 0.003 21.6 4.1 38 20-57 32-70 (187)
128 2ggt_A SCO1 protein homolog, m 24.5 1.2E+02 0.0042 19.8 4.8 40 20-59 24-68 (164)
129 2f9s_A Thiol-disulfide oxidore 24.4 1.2E+02 0.0039 19.8 4.5 39 19-57 26-64 (151)
130 2dlc_X Tyrosyl-tRNA synthetase 24.1 34 0.0012 28.0 2.0 48 8-58 27-79 (394)
131 4a1x_C CP5-46-A peptide; hydro 23.9 40 0.0014 16.7 1.4 16 21-36 6-21 (26)
132 3brs_A Periplasmic binding pro 23.9 1.8E+02 0.0062 21.0 5.9 82 39-131 119-201 (289)
133 1qmv_A Human thioredoxin perox 23.7 1.3E+02 0.0046 20.9 5.0 39 20-58 35-74 (197)
134 2d5b_A Methionyl-tRNA syntheta 23.4 54 0.0019 27.1 3.1 37 20-58 3-48 (500)
135 2h01_A 2-Cys peroxiredoxin; th 23.3 60 0.0021 22.7 3.0 38 20-57 32-70 (192)
136 3rot_A ABC sugar transporter, 23.1 2.2E+02 0.0076 20.8 7.3 57 73-131 143-199 (297)
137 2b5x_A YKUV protein, TRXY; thi 22.8 1.4E+02 0.0048 19.0 4.6 37 20-57 30-66 (148)
138 3ewl_A Uncharacterized conserv 22.6 1.2E+02 0.0042 19.3 4.3 39 19-57 27-68 (142)
139 2vup_A Glutathione peroxidase- 22.5 96 0.0033 21.5 4.0 38 20-57 49-86 (190)
140 1n8j_A AHPC, alkyl hydroperoxi 22.4 1.1E+02 0.0039 21.3 4.4 38 20-57 31-69 (186)
141 2a33_A Hypothetical protein; s 22.4 90 0.0031 23.3 3.9 31 18-48 11-41 (215)
142 1jg7_A BGT, DNA beta-glucosylt 22.3 39 0.0013 26.6 1.8 40 16-58 176-215 (351)
143 2gqt_A UDP-N-acetylenolpyruvyl 21.5 67 0.0023 24.9 3.1 59 26-88 196-257 (268)
144 2h30_A Thioredoxin, peptide me 21.5 1.4E+02 0.0049 19.5 4.6 39 19-57 38-76 (164)
145 2o6l_A UDP-glucuronosyltransfe 21.3 1.2E+02 0.0042 20.4 4.2 46 10-57 11-58 (170)
146 3m9w_A D-xylose-binding peripl 21.3 2.3E+02 0.0077 20.9 6.1 104 17-131 81-199 (313)
147 3uma_A Hypothetical peroxiredo 21.3 94 0.0032 22.1 3.7 40 17-56 55-96 (184)
148 2gt1_A Lipopolysaccharide hept 21.1 83 0.0029 23.9 3.6 26 104-129 14-40 (326)
149 2ji4_A Phosphoribosyl pyrophos 20.9 3.3E+02 0.011 21.9 10.2 120 5-129 64-199 (379)
150 1dku_A Protein (phosphoribosyl 20.5 3.1E+02 0.011 21.4 7.8 80 5-85 41-125 (317)
151 2i3y_A Epididymal secretory gl 20.5 99 0.0034 22.7 3.8 37 20-57 57-93 (215)
152 2lja_A Putative thiol-disulfid 20.4 1.8E+02 0.0062 18.7 5.1 39 19-57 30-68 (152)
153 2v2g_A Peroxiredoxin 6; oxidor 20.2 1.3E+02 0.0045 22.3 4.5 40 18-57 28-68 (233)
154 3foj_A Uncharacterized protein 20.2 1.6E+02 0.0056 18.1 5.9 50 4-60 40-90 (100)
155 1ehi_A LMDDL2, D-alanine:D-lac 20.2 99 0.0034 24.5 4.0 43 19-62 3-46 (377)
156 4e7p_A Response regulator; DNA 20.1 1.8E+02 0.0063 18.6 6.4 43 86-131 63-106 (150)
157 1vgv_A UDP-N-acetylglucosamine 20.1 1.3E+02 0.0044 22.8 4.5 28 20-47 205-232 (384)
No 1
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.8e-35 Score=225.29 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=95.6
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC--CeEEecc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD--FIMVDPW 97 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~--~i~v~~~ 97 (146)
++|++ |||||||||+||+.+++ |++.+ |+|+|+|+..+|. |+..+++++|++|+++|+++++ ++.|+++
T Consensus 2 ~~igi-~gGsFdPih~GHl~i~~-a~~~~--d~v~~~p~~~~~~-----k~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~ 72 (177)
T 3h05_A 2 KKIAI-FGSAFNPPSLGHKSVIE-SLSHF--DLVLLEPSIAHAW-----GKNMLDYPIRCKLVDAFIKDMGLSNVQRSDL 72 (177)
T ss_dssp CEEEE-EEECCSSCCHHHHHHHT-TCTTS--SEEEEEECC------------CCCHHHHHHHHHHHHHHHCCTTEEECCH
T ss_pred cEEEE-EEeccchhhHHHHHHHH-HHHHC--CEEEEEECCCCCC-----CCCCCCHHHHHHHHHHHHhcCCCCcEEEEeh
Confidence 56777 69999999999999998 77665 8999999875553 4678999999999999999875 8999999
Q ss_pred ccc--CCC-ccchHHHHHHHHHHcCCCCe-eeeeccchHHH--HHHHHHHHh
Q 032168 98 EAN--QSG-YQRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF--WCDLYTQRR 143 (146)
Q Consensus 98 E~~--~~~-~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l--W~~~~~~~~ 143 (146)
|.+ +++ ++||++||++++++||+.+| ||||+|++.+| |+++.++++
T Consensus 73 E~~l~~~~~~syT~dTl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~l~~ 124 (177)
T 3h05_A 73 EQALYQPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFAKFYKAEEITE 124 (177)
T ss_dssp HHHHC----CCCHHHHHHHHHHHSTTSEEEEEECHHHHHTGGGSTTHHHHHH
T ss_pred hhhcccCCCCcchHHHHHHHHHHhcCCCeEEEEecchhhhcccchhHHHHHH
Confidence 987 666 99999999999999999999 99999999999 888777664
No 2
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=99.97 E-value=3.9e-32 Score=215.53 Aligned_cols=122 Identities=19% Similarity=0.263 Sum_probs=107.4
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEe
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVD 95 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~ 95 (146)
++..+++++ |||||||+|+||+.+++.|++.+++|+|+|+|+..+|.+ +...+++++|++|+++|+++.+++.|+
T Consensus 19 ~~~~~~i~i-~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p~K----~~~~~~~~~R~~ml~~a~~~~~~v~v~ 93 (242)
T 1yum_A 19 SHMGKRIGL-FGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHR----ETPQVSAAQRLAMVERAVAGVERLTVD 93 (242)
T ss_dssp ---CCEEEE-EEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCGGG----SCTTCCHHHHHHHHHHHHTTCTTEEEC
T ss_pred CCCCceEEE-EEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCCCC----CCCCCCHHHHHHHHHHHhcCCCeEEEe
Confidence 344466777 699999999999999999999999999999998766553 246899999999999999999999999
Q ss_pred cccccCCCccchHHHHHHHHHHc-CCCCe-eeeeccchHHH--HHHHHHHH
Q 032168 96 PWEANQSGYQRTLTVLSRVKNFL-IEAGL-ISTGMDHMQKF--WCDLYTQR 142 (146)
Q Consensus 96 ~~E~~~~~~~yT~~tl~~l~~~~-p~~~~-~liG~D~l~~l--W~~~~~~~ 142 (146)
+||.++++++||++||++++++| |+.+| ||+|+|++.+| |++..+.+
T Consensus 94 ~~e~~~~~~sytvdtl~~l~~~~~p~~~~~fI~G~D~l~~l~~W~~~~~i~ 144 (242)
T 1yum_A 94 PRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALL 144 (242)
T ss_dssp CGGGGSSSSCCHHHHHHHHHHHSCTTCEEEEEEEHHHHTTGGGSTTGGGST
T ss_pred eeeecCCCCCCHHHHHHHHHHHhCCCCcEEEEEehhHhhhhhhhcCHHHHH
Confidence 99999999999999999999999 99999 99999999999 88765443
No 3
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=99.97 E-value=9.4e-32 Score=214.12 Aligned_cols=123 Identities=46% Similarity=0.761 Sum_probs=102.3
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCc-EEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~-v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E 98 (146)
+++++ |||||||||+||+.+++.|++.++.++ ..+|+..++|+.+++.|+..++.++|++|+++|+++++++.|++||
T Consensus 6 ~~i~i-~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~m~~~ai~~~~~~~v~~~E 84 (252)
T 1nup_A 6 PVVLL-ACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWE 84 (252)
T ss_dssp EEEEE-EEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHH
T ss_pred ceEEE-EEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccCCCCCCHHHHHHHHHHHhcCCCceEeehHH
Confidence 45555 799999999999999999999997764 2333334555555555667899999999999999999999999999
Q ss_pred ccCCCccchHHHHHHHHHHc-------------------CC--CCe-eeeeccchHHH-----HHH--HHHHHh
Q 032168 99 ANQSGYQRTLTVLSRVKNFL-------------------IE--AGL-ISTGMDHMQKF-----WCD--LYTQRR 143 (146)
Q Consensus 99 ~~~~~~~yT~~tl~~l~~~~-------------------p~--~~~-~liG~D~l~~l-----W~~--~~~~~~ 143 (146)
..+.+++||++||++++++| |+ .+| ||||+|++.+| |++ +.+.++
T Consensus 85 ~~~~~~syTidtL~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~fiiGaD~l~~l~~p~~W~~~~~~~i~~ 158 (252)
T 1nup_A 85 SEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVE 158 (252)
T ss_dssp HHSSSCCCHHHHHHHHHHHHC--------------------CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHhhccccccccccccccccCCCCCceEEEEEecchHhHCCCcCccCcchHHHHHh
Confidence 99999999999999999999 54 689 99999999999 876 555554
No 4
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=99.97 E-value=1.8e-31 Score=215.84 Aligned_cols=128 Identities=45% Similarity=0.738 Sum_probs=103.4
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCc-EEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEE
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMV 94 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~-v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v 94 (146)
++++.+.+++|||||||||+||+.+++.|++.++.|+ +.++.+.++|+.+++.|+..+++++|++|+++|+++.+++.|
T Consensus 3 ~~~~~~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~~K~~l~s~~~R~~ml~~ai~~~~~~~v 82 (279)
T 1kqn_A 3 NSEKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMAELATKNSKWVEV 82 (279)
T ss_dssp ---CEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCCTTCCCHHHHHHHHHHHTTTCSSEEE
T ss_pred CCCCCceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCCccccCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 3445455555799999999999999999999998765 123333355555555666789999999999999999999999
Q ss_pred ecccccCCCccchHHHHHHHHHHc--------------------------------------CC--CCe-eeeeccchHH
Q 032168 95 DPWEANQSGYQRTLTVLSRVKNFL--------------------------------------IE--AGL-ISTGMDHMQK 133 (146)
Q Consensus 95 ~~~E~~~~~~~yT~~tl~~l~~~~--------------------------------------p~--~~~-~liG~D~l~~ 133 (146)
++||.++.+++||++||++++++| |+ .++ ||||+|++.+
T Consensus 83 ~~~E~~~~~~syTidtL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~GaD~l~~ 162 (279)
T 1kqn_A 83 DTWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKSLEPKTKAVPKVKLLCGADLLES 162 (279)
T ss_dssp CCTGGGCSSCCCHHHHHHHHHHHHTC--------------------------------------CCCEEEEEEEHHHHHH
T ss_pred eccccccCCCCcHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCCccEEEEEehhhHhh
Confidence 999999999999999999999999 66 788 9999999999
Q ss_pred H-----HHH--HHHHHh
Q 032168 134 F-----WCD--LYTQRR 143 (146)
Q Consensus 134 l-----W~~--~~~~~~ 143 (146)
| |++ +.+.++
T Consensus 163 ~~~p~~W~~~~~e~il~ 179 (279)
T 1kqn_A 163 FAVPNLWKSEDITQIVA 179 (279)
T ss_dssp TTSTTTSCHHHHHHHHH
T ss_pred CcCccccCcchHHHHHh
Confidence 9 876 556554
No 5
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=99.97 E-value=1.5e-31 Score=203.84 Aligned_cols=120 Identities=19% Similarity=0.355 Sum_probs=107.5
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
+++++ +||||||+|+||+.+++.|++.+++|+++++|+..+|.+. ++..++.++|++|+++|+++.+++.|+++|.
T Consensus 2 ~~~~v-~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k~---~~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~ 77 (189)
T 2h29_A 2 KKIVL-YGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKK---HHDFIDVQHRLTMIQMIIDELGFGDICDDEI 77 (189)
T ss_dssp EEEEE-EEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCTTSC---CCSSCCCHHHHHHHHHHHHHHTCCEECCHHH
T ss_pred ceEEE-EEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCCCCc---CCCCCCHHHHHHHHHHHHcCCCCEEEehHHh
Confidence 46677 6999999999999999999999999999988887777652 2457899999999999999999999999999
Q ss_pred cCCCccchHHHHHHHHHHcCCCCe-eeeeccchHHH--HHHHHHHHh
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF--WCDLYTQRR 143 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l--W~~~~~~~~ 143 (146)
++++++||++||++++++||+.++ ||+|+|++.+| |++..+.++
T Consensus 78 ~~~~~syt~dtl~~l~~~~p~~~~~~i~G~D~~~~~~~W~~~~~i~~ 124 (189)
T 2h29_A 78 KRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKE 124 (189)
T ss_dssp HHCSBCCHHHHHHHHHHHSTTEEEEEEEEHHHHTTGGGSTTHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHCCCCcEEEEEecchhhhhccccCHHHHHh
Confidence 999999999999999999999999 99999999999 887766553
No 6
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=99.97 E-value=1.7e-30 Score=198.67 Aligned_cols=120 Identities=19% Similarity=0.265 Sum_probs=103.1
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
+++++ +||||||+|+||+.+++.|++.+++|+++|+|+..+|.+. .+..++.++|++|+++++++.+++.|++||.
T Consensus 7 ~~~~v-~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k~---~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~ 82 (194)
T 1kam_A 7 KKIGI-FGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQ---NEDYTDSFHRVEMLKLAIQSNPSFKLELVEM 82 (194)
T ss_dssp CEEEE-EEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC------------CHHHHHHHHHHHHTTCTTEEECCGGG
T ss_pred cEEEE-EEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCCCcC---CcCCCCHHHHHHHHHHHHcCCCCeEEeHHHh
Confidence 36666 6999999999999999999999988999999887766541 1468999999999999999999999999999
Q ss_pred cCCCccchHHHHHHHHHHcCCCCe-eeeeccchHHH--HHHHHHHHh
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF--WCDLYTQRR 143 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l--W~~~~~~~~ 143 (146)
++.+++||++|+++++++||+.++ ||+|+|++.+| |++..+.++
T Consensus 83 ~~~~~~~t~~~l~~l~~~~p~~~~~~v~G~D~~~~~~~W~~~e~i~~ 129 (194)
T 1kam_A 83 EREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLN 129 (194)
T ss_dssp STTCCCSHHHHHHHHHHHSTTSEEEEEEETTTTTTCCCCHHHHHHHH
T ss_pred cCCCCCChHHHHHHHHHHCCCCcEEEEEecchhhhhccccCHHHHHH
Confidence 999999999999999999999999 99999999999 998876653
No 7
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=99.96 E-value=8.1e-30 Score=197.60 Aligned_cols=118 Identities=19% Similarity=0.265 Sum_probs=105.2
Q ss_pred eE-EEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 21 YV-VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 21 ~i-~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
+| ++ +||||||+|+||+.+++.|.+.+++|+++|+|+..+|.+ ++..+++++|++|+++++++.+++.|++||.
T Consensus 3 ~i~~i-~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k----~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~ 77 (213)
T 1k4m_A 3 SLQAL-FGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHR----PQPEANSVQRKHMLELAIADKPLFTLDEREL 77 (213)
T ss_dssp CCEEE-EEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCTTS----CCCSSCHHHHHHHHHHHHTTCTTEEECCHHH
T ss_pred eEEEE-EEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCCCC----CCCCCCHHHHHHHHHHHhccCCCEEEeHHHh
Confidence 36 66 699999999999999999999999999999988766664 2358999999999999999999999999999
Q ss_pred cCCCccchHHHHHHHHHH-cCCCCe-eeeeccchHHH--HHHHHHHHh
Q 032168 100 NQSGYQRTLTVLSRVKNF-LIEAGL-ISTGMDHMQKF--WCDLYTQRR 143 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~-~p~~~~-~liG~D~l~~l--W~~~~~~~~ 143 (146)
++.+++||++|+++++++ +|+.+| |++|+|++.+| |++..+.++
T Consensus 78 ~~~~~s~t~~~l~~l~~~~~~~~~~~~i~G~D~~~~l~~W~~~~~i~~ 125 (213)
T 1k4m_A 78 KRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILD 125 (213)
T ss_dssp HCSSCCCHHHHHHHHHHHHCTTSCEEEEEEHHHHHHGGGSTTHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHhCCCCcEEEEEehhhhhhhhccCCHHHHHh
Confidence 999999999999999999 489999 99999999999 777655543
No 8
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=99.96 E-value=6.9e-30 Score=193.58 Aligned_cols=119 Identities=18% Similarity=0.320 Sum_probs=106.5
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
+++++ +||||||+|+||+.+++.|++.+++|+++|+|+..+|.+. .+..+++++|++|+++++++.+++.|++||.
T Consensus 2 ~~i~i-~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~~k~---~~~~~~~~~R~~ml~~~~~~~~~v~v~~~e~ 77 (189)
T 2qtr_A 2 RKIGI-IGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQ---GRNITSVESRLQMLELATEAEEHFSICLEEL 77 (189)
T ss_dssp CEEEE-EEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCTTCT---TSCCCCHHHHHHHHHHHHTTCTTEEECCTGG
T ss_pred CeEEE-EecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCCCcc---CCCCCCHHHHHHHHHHHhCCCCCEEEehHHh
Confidence 46777 6999999999999999999999999999999887766642 2468999999999999999999999999999
Q ss_pred cCCCccchHHHHHHHHHHcCCCCe-eeeeccchHHH--HHHHHHHH
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF--WCDLYTQR 142 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l--W~~~~~~~ 142 (146)
++.+++||++|+++++.+||+.++ |++|+|.+.++ |+++.+++
T Consensus 78 ~~~~~~~~~~~l~~l~~~~p~~~~~~v~G~D~~~~~~~w~~~~~l~ 123 (189)
T 2qtr_A 78 SRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALL 123 (189)
T ss_dssp GSCSCCCHHHHHHHHHHHCTTCEEEEEEEHHHHHHGGGSTTHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHCCCCCEEEEEehhhhhhhhccCCHHHHH
Confidence 999999999999999999999999 99999999999 98876554
No 9
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=99.91 E-value=2.7e-24 Score=162.43 Aligned_cols=96 Identities=23% Similarity=0.319 Sum_probs=81.5
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeccc
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E 98 (146)
++++++ |||||||+|+||+.++++|++.+ |+++|+++. +|. |+..++.++|++|+++|+++.+++.|++||
T Consensus 2 ~~ki~i-~~GsFDPiH~GHl~i~~~a~~~~--d~viv~v~~-~p~-----K~~~~~~~~R~~ml~~a~~~~~~v~v~~~e 72 (168)
T 3f3m_A 2 EHTIAV-IPGSFDPITYGHLDIIERSTDRF--DEIHVCVLK-NSK-----KEGTFSLEERMDLIEQSVKHLPNVKVHQFS 72 (168)
T ss_dssp CCCEEE-EEECCTTCCHHHHHHHHHHGGGS--SEEEEEECC-----------CCSCHHHHHHHHHHHTTTCTTEEEEECC
T ss_pred CceEEE-EEEEcCcCCHHHHHHHHHHHHhC--CEEEEEEcC-CCC-----CCCCCCHHHHHHhHHHHhcCCCCEEEEEcC
Confidence 357787 69999999999999999999997 799999873 553 468899999999999999999999999998
Q ss_pred ccCCCccchHHHHHHHHHHcCCCCeeeeeccchHHH
Q 032168 99 ANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF 134 (146)
Q Consensus 99 ~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l 134 (146)
.||++|++.++.. +||+|.|++.+|
T Consensus 73 ------~~tvd~~~~l~~~-----~~I~G~d~~~d~ 97 (168)
T 3f3m_A 73 ------GLLVDYCEQVGAK-----TIIRGLRAVSDF 97 (168)
T ss_dssp ------SCHHHHHHHHTCC-----EEEEEECTTCCH
T ss_pred ------CCHHHHHHHcCCC-----EEEEcCCchhhh
Confidence 3999999888644 499999998886
No 10
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=99.89 E-value=2.1e-23 Score=157.92 Aligned_cols=95 Identities=20% Similarity=0.228 Sum_probs=79.3
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEE-eccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMV-DPWE 98 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v-~~~E 98 (146)
|++++ |||||||+|+||+.++++|++.+ |+|+|+++ .+|. |+..++.++|++|+++++++.+++.| +++|
T Consensus 2 m~i~i-~~GsFDPiH~GHl~i~~~a~~~~--D~viv~v~-~~~~-----K~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e 72 (171)
T 3nd5_A 2 RKIAL-FPGSFDPMTNGHLNLIERSAKLF--DEVIIGVF-INTS-----KQTLFTPEEKKYLIEEATKEMPNVRVIMQET 72 (171)
T ss_dssp CCEEE-EEECCTTCCHHHHHHHHHHHTTC--SEEEEEEE-C-----------CCCHHHHHHHHHHHHTTCTTEEEEEECS
T ss_pred CeEEE-EEEEccccCHHHHHHHHHHHHHC--CCeEEEEe-cCCC-----CCCCCCHHHHHHHHHHHHccCCCEEEeeCCC
Confidence 57788 69999999999999999999987 79998875 3453 45789999999999999999999999 9887
Q ss_pred ccCCCccchHHHHHHHHHHcCCCCeeeeeccchHHH
Q 032168 99 ANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF 134 (146)
Q Consensus 99 ~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l 134 (146)
+||++|++.++.. +|++|.|++.++
T Consensus 73 ------~~tvd~~~~l~~~-----~~i~G~~~~~d~ 97 (171)
T 3nd5_A 73 ------QLTVESAKSLGAN-----FLIRGIRNVKDY 97 (171)
T ss_dssp ------SCHHHHHHHHTCC-----EEEEEECSHHHH
T ss_pred ------CcHHHHHHHCCCC-----EEEECCCchhhh
Confidence 5899999887543 599999998884
No 11
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=99.87 E-value=5.7e-22 Score=151.01 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=81.8
Q ss_pred CCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEec
Q 032168 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDP 96 (146)
Q Consensus 17 ~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~ 96 (146)
..+|++++ |||||||+|+||+.++++|++.+ |+|+|+++ .+|. |+..++.++|++|+++++++.+++.|++
T Consensus 18 ~~~mki~i-~~GsFDPiH~GHl~ii~~A~~~~--D~Viv~v~-~np~-----K~~~~s~eeR~~mv~~a~~~~~~v~V~~ 88 (177)
T 3nbk_A 18 GSHMTGAV-CPGSFDPVTLGHVDIFERAAAQF--DEVVVAIL-VNPA-----KTGMFDLDERIAMVKESTTHLPNLRVQV 88 (177)
T ss_dssp --CCCEEE-EEECCTTCCHHHHHHHHHHHHHS--SEEEEEEC-CCTT-----SCCSSCHHHHHHHHHHHCTTCTTEEEEE
T ss_pred CCCCEEEE-EEEeeCCCCHHHHHHHHHHHHHC--CEEEEEEc-CCCC-----CCCCCCHHHHHHHHHHHhCCCCCEEEEe
Confidence 44578888 69999999999999999999998 89999987 3553 4678999999999999999999999999
Q ss_pred ccccCCCccchHHHHHHHHHHcCCCCeeeeeccchHHH
Q 032168 97 WEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF 134 (146)
Q Consensus 97 ~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l 134 (146)
|| .||+++++.+. +++++.|-+++.+|
T Consensus 89 ~e------~l~vd~~~~~~-----a~~ivrGlr~~~Df 115 (177)
T 3nbk_A 89 GH------GLVVDFVRSCG-----MTAIVKGLRTGTDF 115 (177)
T ss_dssp CC------SCHHHHHHHTT-----CCEEEEEECTTCCH
T ss_pred cC------chHHHHHHHcC-----CCEEEECCCchhHH
Confidence 98 48999887643 34688997777765
No 12
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=99.87 E-value=1.9e-22 Score=148.44 Aligned_cols=95 Identities=17% Similarity=0.242 Sum_probs=79.6
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
|++++ +||||||+|+||+.+++.|++.+ |+++++|+. +|++ +..+++++|++|+++|+++.+++.|++||
T Consensus 1 ~~i~i-~~GsFDpvH~GH~~l~~~a~~~~--d~v~v~~~~-~p~k-----~~~~~~~~R~~ml~~a~~~~~~v~v~~~~- 70 (158)
T 1qjc_A 1 QKRAI-YPGTFDPITNGHIDIVTRATQMF--DHVILAIAA-SPSK-----KPMFTLEERVALAQQATAHLGNVEVVGFS- 70 (158)
T ss_dssp -CEEE-EEECCTTCCHHHHHHHHHHHTTS--SEEEEEEES-CCSS-----CCSSCHHHHHHHHHHHTTTCTTEEEEEEC-
T ss_pred CCEEE-EEecCCCCCHHHHHHHHHHHHhC--CEEEEEECC-CCCC-----CCCCCHHHHHHHHHHHHhcCCCeEEcccc-
Confidence 46777 69999999999999999999987 789999885 5643 46899999999999999999999999998
Q ss_pred cCCCccchHHHHHHHHHHcCCCCeeeeeccchHHH
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF 134 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l 134 (146)
+||++|+++++ .+.|++|.|.+.++
T Consensus 71 -----~~~~~~l~~l~-----~~~~v~G~d~~~~~ 95 (158)
T 1qjc_A 71 -----DLMANFARNQH-----ATVLIRGLRAVADF 95 (158)
T ss_dssp -----SCHHHHHHHTT-----CCEEEEECCTTCCH
T ss_pred -----hHHHHHHHHcC-----CCEEEEeccchhhh
Confidence 38998886653 33699999976665
No 13
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=99.86 E-value=8.3e-22 Score=147.11 Aligned_cols=95 Identities=23% Similarity=0.289 Sum_probs=80.5
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
+++++ +||||||+|+||+.+++.|++.+ |+++|+|+ .+|. |+..++.++|++|+++++++.+++.|.++|
T Consensus 2 ~~i~i-~~GsFDpvH~GH~~li~~a~~~~--d~v~v~~~-~~p~-----k~~l~~~~~R~~ml~~a~~~~~~v~v~~~e- 71 (169)
T 1o6b_A 2 ASIAV-CPGSFDPVTYGHLDIIKRGAHIF--EQVYVCVL-NNSS-----KKPLFSVEERCELLREVTKDIPNITVETSQ- 71 (169)
T ss_dssp CCEEE-EEECCTTCCHHHHHHHHHHHHHS--SEEEEEEC-CCCS-----SCCSSCHHHHHHHHHHHHTTCTTEEEEECS-
T ss_pred CcEEE-EEEeeCCCCHHHHHHHHHHHHhC--CEEEEEEC-CCCc-----cCCCCCHHHHHHHHHHHHhcCCCEEEcccc-
Confidence 46777 69999999999999999999997 78988887 3454 356899999999999999999999999998
Q ss_pred cCCCccchHHHHHHHHHHcCCCCeeeeeccchHHH
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF 134 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l 134 (146)
+||+++++.++. +.|++|.|.+.++
T Consensus 72 -----~~~~~~l~~l~~-----~~~i~G~d~~~~~ 96 (169)
T 1o6b_A 72 -----GLLIDYARRKNA-----KAILRGLRAVSDF 96 (169)
T ss_dssp -----SCHHHHHHHTTC-----SEEEEEECSGGGH
T ss_pred -----hHHHHHHHHcCC-----CEEEEcCccccch
Confidence 589999866552 3589999988764
No 14
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=99.85 E-value=1.1e-21 Score=148.04 Aligned_cols=90 Identities=20% Similarity=0.258 Sum_probs=76.5
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeccccc
Q 032168 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (146)
Q Consensus 21 ~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~ 100 (146)
.|++ |||||||+|+||+.++++|++.+ |+|+|+++. +|. |+..+++++|++|+++|+++.+++.|+++|.
T Consensus 13 ~i~i-~~GsFdP~H~GHl~l~~~A~~~~--D~viv~v~~-~~~-----kk~~~~~~~R~~ml~~a~~~~~~v~v~~~e~- 82 (173)
T 1vlh_A 13 MKAV-YPGSFDPITLGHVDIIKRALSIF--DELVVLVTE-NPR-----KKCMFTLEERKKLIEEVLSDLDGVKVDVHHG- 82 (173)
T ss_dssp CEEE-EEECCTTCCHHHHHHHHHHHTTC--SEEEEEEEC-CTT-----CCCSSCHHHHHHHHHHHTTTCTTEEEEEECS-
T ss_pred eEEE-EEEEECcCcHHHHHHHHHHHHHC--CEEEEEEeC-CCC-----CCCCCCHHHHHHHHHHHhcCCCCEEEecCcc-
Confidence 5666 69999999999999999999997 899999876 332 3578999999999999999999999999982
Q ss_pred CCCccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 101 QSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 101 ~~~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
||++|+++++..+ |+.|-..
T Consensus 83 -----~tvd~l~~l~~~~-----~i~gl~~ 102 (173)
T 1vlh_A 83 -----LLVDYLKKHGIKV-----LVRGLRA 102 (173)
T ss_dssp -----CHHHHHHHHTCCE-----EEEEECT
T ss_pred -----hHHHHHHHhCCCe-----EEeCCCc
Confidence 9999999987553 7777443
No 15
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=99.85 E-value=1.8e-21 Score=143.62 Aligned_cols=94 Identities=23% Similarity=0.277 Sum_probs=76.7
Q ss_pred EEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccCC
Q 032168 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQS 102 (146)
Q Consensus 23 ~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~ 102 (146)
++ +||||||+|+||+.+++.|++.+ |+++++++ .+|++. ....++.++|++|+++++++.+++.|+++|.
T Consensus 3 ~v-~~GsFdp~H~GH~~l~~~a~~~~--d~v~v~~~-~~p~k~---~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~--- 72 (160)
T 1od6_A 3 VV-YPGSFDPLTNGHLDVIQRASRLF--EKVTVAVL-ENPSKR---GQYLFSAEERLAIIREATAHLANVEAATFSG--- 72 (160)
T ss_dssp EE-EEECCTTCCHHHHHHHHHHHHHS--SEEEEEEE-CC--------CCSSCHHHHHHHHHHHTTTCTTEEEEEECS---
T ss_pred EE-EEeeeCCCCHHHHHHHHHHHHHC--CEEEEEEc-CCCCCC---CCCCCCHHHHHHHHHHHhcCCCCEEEEecCc---
Confidence 55 69999999999999999999987 78999988 566541 1258999999999999999999999999982
Q ss_pred CccchHHHHHHHHHHcCCCCeeeeeccchHHH
Q 032168 103 GYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF 134 (146)
Q Consensus 103 ~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l 134 (146)
||++|+++++.. .|++|.|.+.++
T Consensus 73 ---~~~~~l~~l~~~-----~~v~G~d~~~~~ 96 (160)
T 1od6_A 73 ---LLVDFVRRVGAQ-----AIVKGLRAVSDY 96 (160)
T ss_dssp ---CHHHHHHHTTCS-----EEEEEECTTSCH
T ss_pred ---hHHHHHHHcCCC-----EEEEeCCcccch
Confidence 999998776533 489999976654
No 16
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=99.83 E-value=2.4e-20 Score=140.03 Aligned_cols=95 Identities=20% Similarity=0.247 Sum_probs=74.7
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeccc
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E 98 (146)
.|++++ |||||||+|+||+.++++|++.+ |+++|+++ .+|. |+..++.++|++|++.++++ +++.|++||
T Consensus 4 mm~i~i-~~GsFDPiH~GHl~li~~A~~~~--d~viv~v~-~~~~-----K~~~~~~~~R~~m~~~~~~~-~~v~V~~~~ 73 (162)
T 4f3r_A 4 MKPIAI-YPGTFDPLTNGHVDIIERALPLF--NKIIVACA-PTSR-----KDPHLKLEERVNLIADVLTD-ERVEVLPLT 73 (162)
T ss_dssp -CCEEE-EEECCTTCCHHHHHHHHHHGGGC--SEEEEEEC-CC-----------CCHHHHHHHHHHHCCC-TTEEEEECC
T ss_pred ceEEEE-EEEEcCCCCHHHHHHHHHHHHHC--CcEEEEEe-cCCc-----cCCCCCHHHHHHHHHHhhCC-CCEEEEecc
Confidence 467777 69999999999999999999997 78988877 3453 46789999999999999999 999999887
Q ss_pred ccCCCccchHHHHHHHHHHcCCCCeeeeeccchHHH
Q 032168 99 ANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF 134 (146)
Q Consensus 99 ~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l 134 (146)
. +++++++.+ +.++++.|.|++.+|
T Consensus 74 ~------l~~~~~~~~-----~~~~~v~G~r~~~Df 98 (162)
T 4f3r_A 74 G------LLVDFAKTH-----QANFILRGLRAVSDF 98 (162)
T ss_dssp S------CHHHHHHHT-----TCCEEEEEECSHHHH
T ss_pred c------hHHHHHHHc-----CCCEEEECCCchhhh
Confidence 2 566665433 345689999999998
No 17
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=99.82 E-value=5.3e-20 Score=141.13 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=79.9
Q ss_pred hhhhcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhc
Q 032168 8 EKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACK 87 (146)
Q Consensus 8 ~~~~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~ 87 (146)
.+|-+|+|..+.|++++ ++|||||+|+||+.++++|++.+ |+++++++. +| .|+.+++.++|++|++.+++
T Consensus 10 ~~~~~~~~~~~~mki~v-~~GsFDpiH~GHl~li~~A~~~~--d~viv~v~~-~p-----~K~~l~s~eeR~~ml~~~~~ 80 (187)
T 3k9w_A 10 GTLEAQTQGPGSMVVAV-YPGTFDPLTRGHEDLVRRASSIF--DTLVVGVAD-SR-----AKKPFFSLEERLKIANEVLG 80 (187)
T ss_dssp ----------CCCCEEE-EEECCTTCCHHHHHHHHHHHHHS--SEEEEEEEC-CG-----GGCCSSCHHHHHHHHHHHHT
T ss_pred chhhhhhcccCCcEEEE-EEEeCCcCcHHHHHHHHHHHHHC--CcEEEEEec-CC-----ccCCCCCHHHHHHHHHHHhc
Confidence 46778888888889888 69999999999999999999987 688777652 33 35678999999999999999
Q ss_pred CCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccchHHH
Q 032168 88 SSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF 134 (146)
Q Consensus 88 ~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l 134 (146)
+.+++.|.+|+ .+++++++.+ +.+++++|.|++.+|
T Consensus 81 ~v~~v~v~~f~------~~~~d~l~~l-----~~~~iv~G~r~~~Df 116 (187)
T 3k9w_A 81 HYPNVKVMGFT------GLLKDFVRAN-----DARVIVRGLRAVSDF 116 (187)
T ss_dssp TCTTEEEEEES------SCHHHHHHHT-----TCSEEEEECCTTSCH
T ss_pred cCCcEEEEech------hhHHHHHHHc-----CCCEEEECCCccccc
Confidence 99999999886 4777776543 345689997777765
No 18
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=99.76 E-value=2.2e-18 Score=128.79 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=71.3
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
|++++ |||||||+|+||+.++++|++.+ |+++|+++ .+| .|+..++.++|++|++.++++.+++.|..|+.
T Consensus 2 m~i~i-~~GsFDPiH~GHl~ii~~A~~~~--D~viv~v~-~~~-----~K~~~~~~~eR~~ml~~a~~~~~~v~v~~~~~ 72 (157)
T 3nv7_A 2 QKVGI-YPGTFDPVTNGHIDIIHRSSELF--EKLIVAVA-HSS-----AKNPMFSLDERLKMIQLATKSFKNVECVAFEG 72 (157)
T ss_dssp -CEEE-EEECCTTCCHHHHHHHHHHHTTS--SEEEEEEE-CCG-----GGCCSSCHHHHHHHHHHHHTTSTTEEEEEECS
T ss_pred CEEEE-EEEEcCCCCHHHHHHHHHHHHhC--CceEEEEc-cCC-----CCCCCCCHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 56777 69999999999999999999987 78877654 233 35678999999999999999999999988752
Q ss_pred cCCCccchHHHHHHHHHHcCCCCeeeeeccchHHH
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF 134 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l 134 (146)
.+ ++.+++..| ++++.|.++..+|
T Consensus 73 ------l~---~~~~~~~~~--~~ivrG~r~~~D~ 96 (157)
T 3nv7_A 73 ------LL---AYLAKEYHC--KVLVRGLRVVSDF 96 (157)
T ss_dssp ------CH---HHHHHHTTC--CCBCCCCSCCCCH
T ss_pred ------hH---HHHHHHcCC--CEEEECCcccchh
Confidence 23 344554433 4477784444433
No 19
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=99.76 E-value=9.1e-19 Score=147.53 Aligned_cols=124 Identities=20% Similarity=0.138 Sum_probs=98.7
Q ss_pred hcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC-
Q 032168 11 SLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS- 89 (146)
Q Consensus 11 ~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~- 89 (146)
|+..+..+-++|+. ||||||+|+||..+++.|++.+++|+++++|.. .|+ |.+.+++++|++|+++++++.
T Consensus 184 R~~f~~~gw~~Vva--fqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~-g~~-----K~~di~~~~R~~~~~~~~~~~~ 255 (396)
T 1jhd_A 184 RNEIKEHGWSKVVA--FQTRNPMHRAHEELCRMAMESLDADGVVVHMLL-GKL-----KKGDIPAPVRDAAIRTMAEVYF 255 (396)
T ss_dssp HHHHHHHTCSSEEE--EEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEE-CCC-----CTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCceEEE--eccCCCCchHHHHHHHHHHHHcCCCeEEEEECC-CCC-----CCCCCCHHHHHHHHHHHHHhcC
Confidence 33333333356655 899999999999999999999999999999985 353 467799999999999999984
Q ss_pred CC----eEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccch--HHH--HHHHHHHHhh
Q 032168 90 DF----IMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHM--QKF--WCDLYTQRRT 144 (146)
Q Consensus 90 ~~----i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l--~~l--W~~~~~~~~~ 144 (146)
|. +.+..+|....+++||+ +..+..+++++..||+|.|.+ .+| |++..+.++.
T Consensus 256 p~~~v~l~~~p~~m~~aGPreai--lhaiirkn~G~t~fIVGrDhag~~~~y~~~~aq~il~~ 316 (396)
T 1jhd_A 256 PPNTVMVTGYGFDMLYAGPREAV--LHAYFRQNMGATHFIIGRDHAGVGDYYGAFDAQTIFDD 316 (396)
T ss_dssp CTTCEEEEEEECCCCCCTHHHHH--HHHHHHHHTTCSEEEECTTTTCCTTCSCTTHHHHHHHH
T ss_pred CCcceEEEechHHhhcCCchHHH--HHHHHHHcCCCcEEEECCCCCCccccCCcchHHHHHHh
Confidence 66 77888888889999888 555444555787899999997 778 8777777654
No 20
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=99.73 E-value=1.5e-17 Score=124.25 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=74.4
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEE-ecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC-CeEEecccc
Q 032168 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVI-GGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD-FIMVDPWEA 99 (146)
Q Consensus 22 i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vv-p~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~-~i~v~~~E~ 99 (146)
+++ |||||||+|+||+.+++.|++.+ |+++|+ |+..+|.+ ++..++.++|++|++.++++.+ ++.+.+++.
T Consensus 2 i~i-~~GsFdp~H~GH~~l~~~a~~~~--d~v~v~v~~~~~p~~----~~~~~~~~~R~~m~~~~~~~~~~~v~v~~~d~ 74 (168)
T 1f9a_A 2 RGF-IIGRFQPFHKGHLEVIKKIAEEV--DEIIIGIGSAQKSHT----LENPFTAGERILMITQSLKDYDLTYYPIPIKD 74 (168)
T ss_dssp EEE-EEECCTTCCHHHHHHHHHHTTTC--SEEEEEECSTTCCSS----SSCCSCHHHHHHHHHHHHTTSSCEEEEEECCC
T ss_pred EEE-EEEecCCcCHHHHHHHHHHHHhC--CeEEEEEcCCCCCCC----CCCCCCHHHHHHHHHHHHhcCCCceEEEeeCC
Confidence 566 69999999999999999999985 788874 57666654 4456799999999999999988 665544332
Q ss_pred cCCCccchHHHHHHHHHHcCCCCeeeeeccchHHH
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF 134 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l 134 (146)
-... .++ .+.+++..+..++.++|.|.+..+
T Consensus 75 l~~~--~~w--~~~~~~~~~~~~~~~~~~~~~~~~ 105 (168)
T 1f9a_A 75 IEFN--SIW--VSYVESLTPPFDIVYSGNPLVRVL 105 (168)
T ss_dssp CSCG--GGH--HHHHHHHSCCCSEEECCCHHHHHH
T ss_pred cccH--HHH--HHHHHHhccCCCEEEECcHHHHHh
Confidence 1111 122 345677778888767888865554
No 21
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.70 E-value=2.8e-17 Score=133.93 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=73.3
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC----CCeEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS----DFIMVD 95 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~----~~i~v~ 95 (146)
+++++ |||||||+|+||+.++++|++.+ |+++|+++..+|.+ +++..+|+++|++|+++++++. +++.+.
T Consensus 7 ~~~~i-~~GtFdP~h~GHl~~~~~a~~~~--d~~~~~v~~~~~~~---~~~~~~~~~~R~~m~~~~~~~~~~~~~~~~~~ 80 (352)
T 2qjt_B 7 YDISV-FIGRFQPFHKGHLHNIIIALQNS--KKVIINIGSCFNTP---NIKNPFSFEQRKQMIESDLQVAGIDLDTVVIE 80 (352)
T ss_dssp EEEEE-EEECCTTCCHHHHHHHHHHHHSE--EEEEEEEEEESCCC---CSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred ccEEE-EEEecCCCChHHHHHHHHHHHhC--CcEEEEECCCCCCc---ccCCCCCHHHHHHHHHHHhccccCccceEEEE
Confidence 57777 69999999999999999999986 68888777666654 2566789999999999999764 567777
Q ss_pred cccccCCCccchHHHHHHH-HHHcCCC-Ceeeee
Q 032168 96 PWEANQSGYQRTLTVLSRV-KNFLIEA-GLISTG 127 (146)
Q Consensus 96 ~~E~~~~~~~yT~~tl~~l-~~~~p~~-~~~liG 127 (146)
.++....+....++.++.. .+.++.. .+.++|
T Consensus 81 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 114 (352)
T 2qjt_B 81 PLADYFYQEQKWQDELRKNVYKHAKNNNSIAIVG 114 (352)
T ss_dssp EEECCTTCHHHHHHHHHHHHTTTSCSSCCEEECC
T ss_pred EcCCCcCChHHHHHHHHHHHHHhcccCCeEEEEc
Confidence 6665434445555654333 3334422 236677
No 22
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=99.70 E-value=1.7e-17 Score=119.01 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=70.0
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
|++++ ++|+|||+|.||+.++++|++.. ++++++++.-++. ....+..+.+.++|++|++ +++..+.+.+
T Consensus 1 m~~~~-~~G~FDp~H~GH~~li~~a~~~~--~~~~v~v~~~~~~-~~~~~~~l~~~~eR~~~l~-~~~~~d~v~~----- 70 (132)
T 2b7l_A 1 MKRVI-TYGTYDLLHYGHIELLRRAREMG--DYLIVALSTDEFN-QIKHKKSYYDYEQRKMMLE-SIRYVDLVIP----- 70 (132)
T ss_dssp CCEEE-EEECCCSCCHHHHHHHHHHHHTS--SEEEEEEECHHHH-HHTTCCCSSCHHHHHHHHH-TBTTCCEEEE-----
T ss_pred CeEEE-EeeecCcCCHHHHHHHHHHHHhC--CcEEEEEECCHHH-hccCCCCCCCHHHHHHHHH-hcCCCCEEEE-----
Confidence 46677 69999999999999999999987 5677777643211 0112356899999999999 7877777665
Q ss_pred cCCCccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
+.+|+ ++++.+++.++ +++++|+|.
T Consensus 71 ---~~~~~-~~~~~~~~~~~--~~iv~G~D~ 95 (132)
T 2b7l_A 71 ---EKGWG-QKEDDVEKFDV--DVFVMGHDW 95 (132)
T ss_dssp ---ECCGG-GHHHHHHHTTC--CEEEECGGG
T ss_pred ---CCChH-HHHHHHHHcCC--CEEEECCCC
Confidence 33455 67777776655 458899995
No 23
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=99.70 E-value=1.7e-17 Score=137.81 Aligned_cols=122 Identities=14% Similarity=0.033 Sum_probs=97.7
Q ss_pred hcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC-
Q 032168 11 SLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS- 89 (146)
Q Consensus 11 ~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~- 89 (146)
|+..+..+-++|+. .|||||+|+||..+++.|++. .|+++++|.. .|+ |.+.+++++|++|++++++++
T Consensus 147 r~~f~~~gw~~Vva--fqTrNPiHrgH~~l~~~ale~--~d~vll~P~~-g~~-----K~~d~~~~~R~~~~~~~i~~~~ 216 (349)
T 1v47_A 147 RAFFRQRGWRKVVA--FQTRNAPHRAHEYLIRLGLEL--ADGVLVHPIL-GAK-----KPDDFPTEVIVEAYQALIRDFL 216 (349)
T ss_dssp HHHHHHTTCCSEEE--EEESSCCCHHHHHHHHHHHHH--SSEEEEEEBC-SCC-----CTTSCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCeEEE--eecCCCCchHHHHHHHHHHHh--CCcEEEEECC-CCC-----CCCCCCHHHHHHHHHHHHhhcC
Confidence 44443444466666 599999999999999999997 5899998873 443 467799999999999999986
Q ss_pred CC----eEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccch--HHH--HHHHHHHHhh
Q 032168 90 DF----IMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHM--QKF--WCDLYTQRRT 144 (146)
Q Consensus 90 ~~----i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l--~~l--W~~~~~~~~~ 144 (146)
|. +.+..+|....+++||+ +.++..+++++..||+|.|.+ .+| |++..+.++.
T Consensus 217 p~~~~~l~~~p~~m~~aGPreai--lhaiirkn~G~t~fIVGrDhag~~~~y~~~~aq~i~~~ 277 (349)
T 1v47_A 217 PQERVAFFGLATPMRYAGPKEAV--FHALVRKNFGATHFLVGRDHAGVGDFYDPYAAHRIFDR 277 (349)
T ss_dssp CGGGEEECCBCSCCCCCTHHHHH--HHHHHHHHTTCSEEEECTTTTCSTTCSCTTHHHHGGGG
T ss_pred CCcceEEEechHHhhcCCcHHHH--HHHHHHHcCCCcEEEECcCCCCcccccCcccHHHHHHh
Confidence 76 66777888889999886 777666677887899999997 777 8888777654
No 24
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=99.69 E-value=1.3e-16 Score=120.43 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=76.1
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEE-ecccCCCCcccccCCCCCHHHHHHHHHHHhcCC----CCeEEe
Q 032168 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVI-GGYMSPVNDAYKKRGLISAEHRINLCNLACKSS----DFIMVD 95 (146)
Q Consensus 21 ~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vv-p~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~----~~i~v~ 95 (146)
++++ +||||||+|+||+.+++.|++.+ |+++++ |+..+|.+ ++..++.++|++|++.++++. +++.|.
T Consensus 4 ~~~i-~~G~Fdp~H~GH~~l~~~a~~~~--d~v~v~v~~~~~p~~----~~~~~~~~~R~~~~~~a~~~~~~~~~~v~v~ 76 (181)
T 1ej2_A 4 MRGL-LVGRMQPFHRGHLQVIKSILEEV--DELIICIGSAQLSHS----IRDPFTAGERVMMLTKALSENGIPASRYYII 76 (181)
T ss_dssp CEEE-EEECCTTCCHHHHHHHHHHTTTC--SEEEEEECSTTCCSS----SSSCSCHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred eEEE-EEEEcCCcCHHHHHHHHHHHHhC--CeeEEEECCCCCCcC----CCCCCCHHHHHHHHHHHHhhCCCCCCcEEEE
Confidence 4666 69999999999999999999884 788775 46655554 455789999999999999977 477776
Q ss_pred cccccCCCccchHHHHHHHHHHcCCCCeeeeeccchHHH
Q 032168 96 PWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHMQKF 134 (146)
Q Consensus 96 ~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l~~l 134 (146)
.++.... ...-.+.+++..+.++++++|.|.+..+
T Consensus 77 ~~d~~~~----~~~w~~~~~~l~~~~~~~v~gr~~~~~~ 111 (181)
T 1ej2_A 77 PVQDIEC----NALWVGHIKMLTPPFDRVYSGNPLVQRL 111 (181)
T ss_dssp ECCCCSC----HHHHHHHHHHHSCCCSEEECCCHHHHHH
T ss_pred ecCccCC----HHHHHHHHHHHCCCCCEEEECCHHHHHH
Confidence 6654321 1122334567777888778998876554
No 25
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.68 E-value=2.2e-17 Score=133.58 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=53.2
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEE-EecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCV-IGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD 90 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~v-vp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~ 90 (146)
|++++ +||||||+|+||+.+++.|++.+ |+++| +++..+|.+ ++..+++++|++|+++++++.+
T Consensus 7 ~~~~i-~~G~FdP~H~GH~~li~~a~~~~--d~v~v~v~~~~~p~~----~~~~~~~~~R~~m~~~~~~~~~ 71 (341)
T 2qjo_A 7 YQYGI-YIGRFQPFHLGHLRTLNLALEKA--EQVIIILGSHRVAAD----TRNPWRSPERMAMIEACLSPQI 71 (341)
T ss_dssp EEEEE-EEECCTTCCHHHHHHHHHHHHHE--EEEEEEEEEETCCCC----SSSCSCHHHHHHHHHTTSCHHH
T ss_pred eeEEE-EEEEeCCCCHHHHHHHHHHHHhC--CeEEEEECCcccCCC----CCCCCCHHHHHHHHHHHhhhcc
Confidence 56777 69999999999999999999998 68875 776655554 5567899999999999887753
No 26
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=99.67 E-value=3.8e-17 Score=116.65 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=68.1
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccC--CCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMS--PVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPW 97 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~--p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~ 97 (146)
|++++ ++|||||+|+||+.++++|++.. |+++++++.-+ |.+ .+..+.+.++|++|++ +++..+.+.+
T Consensus 1 m~~~~-~~G~FDp~H~GH~~li~~a~~~~--d~~~v~v~~~~~~~~~---~~~~l~~~~eR~~~l~-~~~~~d~v~~--- 70 (129)
T 1coz_A 1 MKKVI-TYGTFDLLHWGHIKLLERAKQLG--DYLVVAISTDEFNLQK---QKKAYHSYEHRKLILE-TIRYVDEVIP--- 70 (129)
T ss_dssp CCEEE-EEECCCSCCHHHHHHHHHHHTTS--SEEEEEEECHHHHHHH---TCCCSSCHHHHHHHHT-TBTTCCEEEE---
T ss_pred CcEEE-EEEeCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHhcC---CCCCCCCHHHHHHHHH-hcCCCCEEEe---
Confidence 46677 69999999999999999999986 67888877532 111 2356899999999999 6876776553
Q ss_pred cccCCCccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 98 EANQSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 98 E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
..+++ ++++.+++.. .+.+++|+|.
T Consensus 71 -----~~~~~-~~~~~l~~~~--~~~iv~G~D~ 95 (129)
T 1coz_A 71 -----EKNWE-QKKQDIIDHN--IDVFVMGDDW 95 (129)
T ss_dssp -----ECCST-THHHHHHHTT--CSEEEEEGGG
T ss_pred -----CCCHH-HHHHHHHHhC--CcEEEECCCC
Confidence 23344 5666676543 3468899993
No 27
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.66 E-value=4.4e-17 Score=134.24 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=65.9
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc-c---cCCCCCHHHHHHHHHHHhcCCCC-eEE
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY-K---KRGLISAEHRINLCNLACKSSDF-IMV 94 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~-~---k~~~~~~~~R~~Ml~lai~~~~~-i~v 94 (146)
+++++ |||||||+|+||+.++++|++.+ |+|+|+|+..+|++..+ + .+..+++++|++|++.++++.++ ++|
T Consensus 2 ~~~~i-~~GtFdP~h~GHl~~~~~a~~~~--d~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~~~~v 78 (365)
T 1lw7_A 2 KKVGV-IFGKFYPVHTGHINMIYEAFSKV--DELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQKNQIFI 78 (365)
T ss_dssp CCEEE-EEECCSSCCHHHHHHHHHHHTTC--SEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTTTTTEEE
T ss_pred CcEEE-EEEeeCCCCHHHHHHHHHHHHHC--CEEEEEECCCCccccccccccccCCCCCHHHHHHHHHHHhhcCCCcEEE
Confidence 46777 59999999999999999999986 89999998766531100 0 13359999999999999999999 999
Q ss_pred ecccccCCCcc
Q 032168 95 DPWEANQSGYQ 105 (146)
Q Consensus 95 ~~~E~~~~~~~ 105 (146)
..++.. ..++
T Consensus 79 ~~~~~~-~~~~ 88 (365)
T 1lw7_A 79 HHLVED-GIPS 88 (365)
T ss_dssp EEEECS-SSCC
T ss_pred EEeccC-CCCC
Confidence 999875 4444
No 28
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=99.65 E-value=7.5e-17 Score=119.21 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=57.5
Q ss_pred EEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHh-cCC-CCeEEeccc
Q 032168 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLAC-KSS-DFIMVDPWE 98 (146)
Q Consensus 23 ~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai-~~~-~~i~v~~~E 98 (146)
++ |||||||+|+||+.++++|++. ++|+++|+++..+|++. +++...++++|++|++.++ +++ +.+.+...+
T Consensus 3 ~i-~gGtFDPiH~GHl~l~~~a~~~-~~d~viv~v~~~~~~~k--~~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~ 76 (148)
T 3do8_A 3 VA-LGGTFEPLHEGHKKLIDVAIKL-GGRDITIGVTSDRMARA--RIRSVLPFAIRAENVKRYVMRKYGFEPEIVKIT 76 (148)
T ss_dssp EE-EEECCSSCCHHHHHHHHHHHHH-HTTCEEEEEECHHHHHH--HSCCCSCHHHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred EE-EEeeCCCCCHHHHHHHHHHHHh-CCCEEEEEECCCccccc--cCCCCCCHHHHHHHHHHHHhcccCCcEEEEeec
Confidence 55 6999999999999999999998 56899999887666521 1256899999999999999 764 356665554
No 29
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=99.26 E-value=6.4e-12 Score=91.55 Aligned_cols=94 Identities=17% Similarity=0.225 Sum_probs=60.7
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
|++++ ++|+|||+|.||..++++|.+.. ++++++.+. .|.-....++.+.+.++|++|++. +...+.+.+..
T Consensus 2 m~~v~-~~G~FD~vH~GH~~li~~a~~~~--~~~~v~v~~-~~~~~~~~~~~l~~~~eR~~~l~~-~~~vd~v~~~~--- 73 (143)
T 3glv_A 2 MIRVM-ATGVFDILHLGHIHYLKESKKLG--DELVVVVAR-DSTARNNGKIPIFDENSRLALISE-LKVVDRAILGH--- 73 (143)
T ss_dssp CCEEE-EEECCSSCCHHHHHHHHHHHTTS--SEEEEEECC-HHHHHHTTCCCSSCHHHHHHHHTT-BTTCSEEEECC---
T ss_pred ceEEE-EEeecCCCCHHHHHHHHHHHHhC--CCcEEEEEC-CcchhhcCCCCCCCHHHHHHHHHh-cCCCCEEEEcC---
Confidence 67777 59999999999999999999976 456554332 121000124578999999999987 55455555531
Q ss_pred cCCCccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 100 NQSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 100 ~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
+.-.++. +++. +.+.+++|.|.
T Consensus 74 ----~~~f~~~---~~~l--~~~~iv~G~d~ 95 (143)
T 3glv_A 74 ----EGDMMKT---VIEV--KPDIITLGYDQ 95 (143)
T ss_dssp ----TTCHHHH---HHHH--CCSEEEECTTC
T ss_pred ----chhHHHH---HHhc--CCCEEEECCCC
Confidence 1113343 3322 34557889995
No 30
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=99.18 E-value=1.2e-11 Score=97.58 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=51.8
Q ss_pred CCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEE
Q 032168 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMV 94 (146)
Q Consensus 17 ~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v 94 (146)
+.++++++ +.|||||+|.||+.++++|++.++.|.++|.-+ ..+.-..++...+.+.++|++|++. ++..+.+.+
T Consensus 73 ~~~~~~V~-~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~-~D~~v~~~Kg~pi~s~eER~e~v~~-~k~VD~Vvv 147 (236)
T 3hl4_A 73 CERPVRVY-ADGIFDLFHSGHARALMQAKNLFPNTYLIVGVC-SDELTHNFKGFTVMNENERYDAVQH-CRYVDEVVR 147 (236)
T ss_dssp TTSCEEEE-EEECCTTCCHHHHHHHHHHHTSSSSEEEEEEEC-CHHHHHHHTCCCSSCHHHHHHHHHT-BTTCSEEES
T ss_pred CCCCeEEE-EeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEc-ccHHHhhcCCCCCCCHHHHHHHHHH-hCCCCeEEE
Confidence 34455566 699999999999999999999875456665422 1111001233578999999999994 665666554
No 31
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=98.97 E-value=6.4e-10 Score=91.99 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=60.3
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCC--cEEEEecccCCCCccccc--CCCCCHHHHHHHHHHHhcCCCCeEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSE--GYCVIGGYMSPVNDAYKK--RGLISAEHRINLCNLACKSSDFIMVD 95 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d--~v~vvp~~~~p~~~~~~k--~~~~~~~~R~~Ml~lai~~~~~i~v~ 95 (146)
+++++ +.|||||+|.||+.++++|++.. | .++|. ....+.-..++. .++.+.++|++|++ +++..+++.+.
T Consensus 198 ~~iv~-~~GsFD~~h~GHl~~L~rA~~l~--D~~~LiVg-V~~d~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~vd~V~v~ 272 (341)
T 3elb_A 198 ETVIY-VAGAFDLFHIGHVDFLEKVHRLA--ERPYIIAG-LHFDQEVNHYKGKNYPIMNLHERTLSVL-ACRYVSEVVIG 272 (341)
T ss_dssp CEEEE-EEECCTTCCHHHHHHHHHHHTTS--SSEEEEEE-EECHHHHHHHHCTTCCSSCHHHHHHHHH-TBTTCCEEEEE
T ss_pred CEEEE-EecccCCCCHHHHHHHHHHHHhC--CCCEEEEE-EccCHhhHhhcCCCCCCCCHHHHHHHHH-HcCCCCCEEEC
Confidence 45666 69999999999999999999976 5 34332 111110001222 47899999999999 57878888774
Q ss_pred cccccCCCccchHHHHHHHHHHcCCCCeeeeecc
Q 032168 96 PWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMD 129 (146)
Q Consensus 96 ~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D 129 (146)
.. ..-+.+.++.+ +.++++-|.|
T Consensus 273 ~~------~~l~~~~~~~~-----~~~~iv~G~d 295 (341)
T 3elb_A 273 AP------YAVTAELLSHF-----KVDLVCHGKT 295 (341)
T ss_dssp EC------SSCCHHHHHHT-----TCSEEEECSS
T ss_pred CC------CcchHHHHHhc-----CCcEEEECCC
Confidence 21 12345555443 3344566665
No 32
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=98.86 E-value=1.7e-09 Score=89.43 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=50.4
Q ss_pred CCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeE
Q 032168 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIM 93 (146)
Q Consensus 17 ~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~ 93 (146)
.+++++++ +.|+|||+|.||+.++++|++.. |+++|..+ ..|.-..++.+.+.+.++|++|++. ++..+.+.
T Consensus 4 ~~~~~~v~-~~G~FD~lH~GH~~lL~~A~~l~--d~LiVgV~-~d~~v~~~K~~pi~s~eER~~~l~~-l~~VD~Vv 75 (341)
T 3elb_A 4 GRRAVRVW-CDGCYDMVHYGHSNQLRQARAMG--DYLIVGVH-TDEEIAKHKGPPVFTQEERYKMVQA-IKWVDEVV 75 (341)
T ss_dssp CCCCCEEE-EEECCCSCCHHHHHHHHHHHHTS--SEEEEEEC-CHHHHHHHSSCCSSCHHHHHHHHHH-BTTCCEEE
T ss_pred CCCceEEE-EEeeCCCCCHHHHHHHHHHHHhC--CcCEEEee-cCHHHhccCCCCCCCHHHHHHHHHH-cCCCCEEE
Confidence 35567777 59999999999999999999986 56655422 1121001223578999999999996 55555443
No 33
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=98.40 E-value=2.9e-07 Score=75.93 Aligned_cols=105 Identities=13% Similarity=0.209 Sum_probs=61.2
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCc-EEEEecccCCCCccc---c--cCCCCCHHHHHHHHHHHhcCCCCeE
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYMSPVNDAY---K--KRGLISAEHRINLCNLACKSSDFIM 93 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~-v~vvp~~~~p~~~~~---~--k~~~~~~~~R~~Ml~lai~~~~~i~ 93 (146)
.++++ ..|+||++|.||.++++.|.+..+..+ ..++-+ +.|+...+ . ...+.+.++|+++++.+ ..+.+.
T Consensus 15 ~~~vv-tiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvt-FdphP~~v~~~~~~~~~L~~~~eR~~ll~~~--gVD~v~ 90 (338)
T 2x0k_A 15 DNSAV-TIGVFDGVHRGHQKLINATVEKAREVGAKAIMVT-FDPHPVSVFLPRRAPLGITTLAERFALAESF--GIDGVL 90 (338)
T ss_dssp CCEEE-EESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEE-ESSCHHHHHSTTCSCCBSSCHHHHHHHHHHT--TCSEEE
T ss_pred CCeEE-EEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEE-ecCCHHHHcCCccCCCCCCCHHHHHHHHHhc--CCCEEE
Confidence 34566 589999999999999999988763212 223322 23321110 1 13478999999999883 366677
Q ss_pred EecccccCCCccchHHHHHH-HHHHcCCCCeeeeeccc
Q 032168 94 VDPWEANQSGYQRTLTVLSR-VKNFLIEAGLISTGMDH 130 (146)
Q Consensus 94 v~~~E~~~~~~~yT~~tl~~-l~~~~p~~~~~liG~D~ 130 (146)
+.+|..+....+.. +.++. +.+. -+.+.+++|.|.
T Consensus 91 v~~F~~~~a~ls~e-~Fi~~il~~~-l~~~~ivvG~Df 126 (338)
T 2x0k_A 91 VIDFTRELSGTSPE-KYVEFLLEDT-LHASHVVVGANF 126 (338)
T ss_dssp EECTTTSSSSCCHH-HHHHHCCCCC-TCEEEEEEETTC
T ss_pred EccccHHHHhCCHH-HHHHHHHHhh-cCCCEEEEeecC
Confidence 77775443332221 23332 1111 122337888884
No 34
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=98.17 E-value=8e-06 Score=68.66 Aligned_cols=108 Identities=19% Similarity=0.113 Sum_probs=69.7
Q ss_pred cccccCCcceEEEEeCCCCchhhHHH-HHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC
Q 032168 12 LESKTQGKTYVVLVATGSFNPPTFMH-LRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD 90 (146)
Q Consensus 12 ~~~~~~~k~~i~llfGGSFnP~H~GH-l~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~ 90 (146)
+..+..+=++|+. ..|+||+|+|| ..+.+.|++. .+.+.+.|.. .+ .|.+-++.+-|++..+.+++..|
T Consensus 180 ~~f~~~gw~~Vva--fqtrNP~HraH~e~~~r~a~e~--~~~lllhPlv-G~-----tK~~Dip~~vR~~~~~~~l~~yp 249 (395)
T 1r6x_A 180 LEFQSRQWDRVVA--FQTRNPMHRAHRELTVRAAREA--NAKVLIHPVV-GL-----TKPGDIDHHTRVRVYQEIIKRYP 249 (395)
T ss_dssp HHHHHTTCCCEEE--ECCSSCCCHHHHHHHHHHHHHT--TCEEEECCBC-SB-----CCTTCCCHHHHHHHHHHHGGGSS
T ss_pred HHHHhcCCCcEEE--eccCCCcchhhHHHHHHHHHHc--CCcEEEEECC-CC-----CCCCCCCHHHHHHHHHHHHHhCC
Confidence 3333334356666 57999999999 5666666653 2567665532 22 35677999999999999999876
Q ss_pred C--eEEeccc--ccCCCccchHHHHHHHHHHcCCCCeeeeeccch
Q 032168 91 F--IMVDPWE--ANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHM 131 (146)
Q Consensus 91 ~--i~v~~~E--~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l 131 (146)
. +.+..+. ..-.||...+ +..+-.++-++..||+|-|..
T Consensus 250 ~~~v~l~~~p~~mryAGPrEai--~HAiiRkN~GcthfIVGRDhA 292 (395)
T 1r6x_A 250 NGIAFLSLLPLAMRMSGDREAV--WHAIIRKNYGASHFIVGRDHA 292 (395)
T ss_dssp TTCEEECCBCCBCCCCHHHHHH--HHHHHHHHTTCSEEEECTTTT
T ss_pred CccEEEEecchhhhhcCcHHHH--HHHHHHHHcCCceEEECCCCC
Confidence 4 4444433 3345554443 566434444666799998854
No 35
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=98.11 E-value=1.2e-06 Score=71.00 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=54.7
Q ss_pred eCCCCchhhHHHHHHHHHHHHhhC---CCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHHhcCCCCeEEecccc
Q 032168 26 ATGSFNPPTFMHLRMFELARDTLN---SEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (146)
Q Consensus 26 fGGSFnP~H~GHl~l~~~a~~~~~---~d~v~vvp~~~~p~~~~~---~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~ 99 (146)
..|+||++|.||.++++.|++..+ +.-+.+. +.|+..-. ....+.+.++|++|++.+ . .+.+..| .
T Consensus 4 tiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVvt---FdphP~~l~~~~~~~l~~~~eR~~ll~~l-g---~~~v~~F-~ 75 (293)
T 1mrz_A 4 SIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYT---ISYPPEYFLPDFPGLLMTVESRVEMLSRY-A---RTVVLDF-F 75 (293)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEE---ESSCGGGGSTTCCCBSSCHHHHHHHHTTT-S---CEEEECH-H
T ss_pred EEeeCccccHHHHHHHHHHHHHHHHcCCeEEEEE---ecCCHHHhCCCCCCCCCCHHHHHHHHHhC-C---CEEEEEh-H
Confidence 479999999999999999987753 2223222 23322000 123589999999998873 3 5555566 2
Q ss_pred c--CCCccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 100 N--QSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 100 ~--~~~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
+ ...+...++.+ . -+.+.+++|.|-
T Consensus 76 ~~a~ls~~~Fi~~i---l---l~~~~iVvG~Df 102 (293)
T 1mrz_A 76 RIKDLTPEGFVERY---L---SGVSAVVVGRDF 102 (293)
T ss_dssp HHTTCCHHHHHHHH---C---TTCCEEEEETTC
T ss_pred HhhcCCHHHHHHHH---h---cCCCEEEECCCC
Confidence 2 22333333332 2 234458889884
No 36
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.06 E-value=1.5e-05 Score=68.99 Aligned_cols=109 Identities=19% Similarity=0.117 Sum_probs=71.7
Q ss_pred hcccccCCcceEEEEeCCCCchhhHHH-HHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC
Q 032168 11 SLESKTQGKTYVVLVATGSFNPPTFMH-LRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS 89 (146)
Q Consensus 11 ~~~~~~~~k~~i~llfGGSFnP~H~GH-l~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~ 89 (146)
|+..+..+=++|+. ..|+||+|+|| ..+.+.|++.. +.+.+.|.. .++ |.+-++++-|++..+.+++..
T Consensus 180 r~~f~~~gw~~v~a--fqtrnP~HraH~e~~~~~a~e~~--~~lll~pl~-g~~-----k~~di~~~~r~~~~~~~~~~y 249 (511)
T 1g8f_A 180 RLEFQSRQWDRVVA--FQTRNPMHRAHRELTVRAAREAN--AKVLIHPVV-GLT-----KPGDIDHHTRVRVYQEIIKRY 249 (511)
T ss_dssp HHHHHHTTCCCEEE--EEESSCCCHHHHHHHHHHHHHHT--CEEEEEEBC-SBC-----STTCCCHHHHHHHHHHHGGGS
T ss_pred HHHHHHcCCCcEEE--EecCCCCchHHHHHHHHHHHHcC--CcEEEEECC-CCC-----CCCCCCHHHHHHHHHHHHHhC
Confidence 33333444456666 46999999999 56666666643 567777652 233 566799999999999999987
Q ss_pred CC--eEE--ecccccCCCccchHHHHHHHHHHcCCCCeeeeeccch
Q 032168 90 DF--IMV--DPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHM 131 (146)
Q Consensus 90 ~~--i~v--~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l 131 (146)
|. +.+ ..++....+|...+ +..+-.+.-++..||+|-|..
T Consensus 250 p~~~~~l~~~p~~m~yaGprea~--~hai~r~n~G~th~IvGrdhA 293 (511)
T 1g8f_A 250 PNGIAFLSLLPLAMRMSGDREAV--WHAIIRKNYGASHFIVGRDHA 293 (511)
T ss_dssp CTTSEEECCBCCBCCCCHHHHHH--HHHHHHHHTTCSEEECCTTTT
T ss_pred CcccEEEEecchhhhccCcHHHH--HHHHHHHhCCCceEEeCCCCC
Confidence 64 333 44544455665444 555334444666799998854
No 37
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=97.77 E-value=5.9e-05 Score=62.59 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=45.5
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEE-EEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEec
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYC-VIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDP 96 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~-vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~ 96 (146)
+.+++++. -|.|||+|+||..++++|++ . +-+. |+.+-+.|... ....+++..+|.+|+..+ +.+.+-+-+
T Consensus 50 ~~~~~v~~-lG~FDg~H~GHq~lI~~a~~-~--~~~~~Vms~~~~~vqr--g~~~l~~~~~R~~~~~~~--GvD~vielp 121 (357)
T 3gmi_A 50 NKDKIVCD-FTEYNPLHKGHKYALEKGKE-H--GIFISVLPGPLERSGR--GIPYFLNRYIRAEMAIRA--GADIVVEGP 121 (357)
T ss_dssp TCCCEEEE-ECCCTTCCHHHHHHHHHHHT-S--SEEEEEECCTTSBCTT--SSBCSSCHHHHHHHHHHH--TCSEEEECC
T ss_pred CCCCEEEE-EEecCccCHHHHHHHHHHHH-c--CCeEEEEcCchHHhcC--CCCcCCCHHHHHHHHHHC--CCCEEEEcC
Confidence 34556664 79999999999999999998 2 3333 33221110110 123688999999999886 333344444
Q ss_pred c
Q 032168 97 W 97 (146)
Q Consensus 97 ~ 97 (146)
|
T Consensus 122 F 122 (357)
T 3gmi_A 122 P 122 (357)
T ss_dssp C
T ss_pred c
Confidence 4
No 38
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.72 E-value=0.00015 Score=62.88 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=66.1
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC-C--Ce
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS-D--FI 92 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~-~--~i 92 (146)
..+-++|+. -=|+||+|.||..+++.|+.... +.+.|.|. ..+. |.+-++.+.|++..+.+++.. | .+
T Consensus 160 ~~gw~~v~a--fqtrnP~Hr~H~~l~~~a~~~~~-~~llv~p~-~g~~-----k~~di~~~~R~~~~~~~~~~~~p~~~v 230 (546)
T 2gks_A 160 SLGLDKIVA--FQTRNPMHRVHEELTKRAMEKVG-GGLLLHPV-VGLT-----KPGDVDVYTRMRIYKVLYEKYYDKKKT 230 (546)
T ss_dssp HHTCSCEEE--ECCSSCCCHHHHHHHHHHHHHHT-SEEEECCB-CSBC-----CTTSCCHHHHHHHHHHHHHHHSCTTTE
T ss_pred HcCCCcEEE--EecCCCCcHHHHHHHHHHHHhcC-CcEEEEeC-cCCC-----CCCCCCHHHHHHHHHHHHHhcCCCCcE
Confidence 333356666 46899999999999999987542 56766553 2222 456799999999999998864 3 45
Q ss_pred EEeccccc--CCCccchHHHHHH-HHHHcCCCCeeeeecc
Q 032168 93 MVDPWEAN--QSGYQRTLTVLSR-VKNFLIEAGLISTGMD 129 (146)
Q Consensus 93 ~v~~~E~~--~~~~~yT~~tl~~-l~~~~p~~~~~liG~D 129 (146)
.+..+... -.+|. -..+.. +++.|. +.-||+|-|
T Consensus 231 ~~~~~p~~m~~agpr--ea~~ha~ir~n~G-~th~ivgrd 267 (546)
T 2gks_A 231 ILAFLPLAMRMAGPR--EALWHGIIRRNYG-ATHFIVGRD 267 (546)
T ss_dssp EECBBCCBCCCCTHH--HHHHHHHHHHHTT-CSEEEECTT
T ss_pred EEeecCchhhccCch--HHHHHHHHHHhCC-CCeEEECCC
Confidence 55555443 23333 333333 455554 545888844
No 39
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=97.67 E-value=8.9e-05 Score=60.38 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=61.9
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcE-EEEecccCCCCccc-------ccCCCCCHHHHHHHHHHHhcCCCCe
Q 032168 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGY-CVIGGYMSPVNDAY-------KKRGLISAEHRINLCNLACKSSDFI 92 (146)
Q Consensus 21 ~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v-~vvp~~~~p~~~~~-------~k~~~~~~~~R~~Ml~lai~~~~~i 92 (146)
+.++ .-|+||-+|.||.++++.|.+.....+. .++-+ +.|+...+ ....+.+.++|+++++.. . .+.+
T Consensus 21 ~~vv-tiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~T-FdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~l-G-VD~v 96 (308)
T 3op1_A 21 DSVV-VLGYFDGIHKGHQELFRVANKAARKDLLPIVVMT-FNESPKIALEPYHPDLFLHILNPAERERKLKRE-G-VEEL 96 (308)
T ss_dssp CEEE-EESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEE-ESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHH-T-CCEE
T ss_pred CeEE-EEecCCcccHHHHHHHHHHHHHHHhcCCceEEEE-ecCCHHHHhCccccCCcccCCCHHHHHHHHHHc-C-CCEE
Confidence 4455 4799999999999999999988753321 22222 45533211 123588999999999874 3 5666
Q ss_pred EEeccccc--CCCccchHHHHHHHHHHcCCCCeeeeecc
Q 032168 93 MVDPWEAN--QSGYQRTLTVLSRVKNFLIEAGLISTGMD 129 (146)
Q Consensus 93 ~v~~~E~~--~~~~~yT~~tl~~l~~~~p~~~~~liG~D 129 (146)
.+-+|..+ +-.+...++.+ ++ .. +.+.+++|.|
T Consensus 97 ~~~~F~~~~a~ls~e~Fv~~l--l~-~l-~~~~ivvG~D 131 (308)
T 3op1_A 97 YLLDFSSQFASLTAQEFFATY--IK-AM-NAKIIVAGFD 131 (308)
T ss_dssp EEECCCHHHHTCCHHHHHHHH--HH-HH-TEEEEEEETT
T ss_pred EEecCCHHHHcCCHHHHHHHH--HH-Hc-CCCEEEECcC
Confidence 66666543 23333334322 22 22 2333788998
No 40
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.44 E-value=0.00061 Score=59.44 Aligned_cols=107 Identities=14% Similarity=0.026 Sum_probs=66.9
Q ss_pred cccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCC
Q 032168 12 LESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDF 91 (146)
Q Consensus 12 ~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~ 91 (146)
+..+..+-++|+. -=|+||+|.||..+++.|+.... +.+.|.|. ..+. |.+-++.+.|++..+.+++..|.
T Consensus 183 ~~~~~~gw~~v~a--fqtrnP~Hr~H~~l~~~a~~~~~-~~llv~pl-~g~~-----k~~di~~~~R~~~~~~~~~~~p~ 253 (573)
T 1m8p_A 183 VHFDKLGWSRVVA--FQTRNPMHRAHRELTVRAARSRQ-ANVLIHPV-VGLT-----KPGDIDHFTRVRAYQALLPRYPN 253 (573)
T ss_dssp HHHHHTTCCSEEE--ECCSSCCCHHHHHHHHHHHHHTT-CEEEECCB-CCCC-----CTTCHHHHHHHHHHHHHGGGSST
T ss_pred HHHHHcCCCeEEE--EeeCCCcchhhHHHHHHHHHhcC-CcEEEEeC-CCCC-----CCCCCCHHHHHHHHHHHHHhCCC
Confidence 3333444466766 46899999999999999988743 56666542 1222 45679999999999999988764
Q ss_pred --eEEeccccc--CCCccchHHHHHHHHHHcCCCCeeeeecc
Q 032168 92 --IMVDPWEAN--QSGYQRTLTVLSRVKNFLIEAGLISTGMD 129 (146)
Q Consensus 92 --i~v~~~E~~--~~~~~yT~~tl~~l~~~~p~~~~~liG~D 129 (146)
+.+..+... -.+|...+-- ..+++.|. +..||+|-|
T Consensus 254 ~~v~l~~~p~~m~~agprea~~h-a~ir~n~G-~th~ivgrd 293 (573)
T 1m8p_A 254 GMAVLGLLGLAMRMGGPREAIWH-AIIRKNHG-ATHFIVGRD 293 (573)
T ss_dssp TSEEECBBCCCCCCCHHHHHHHH-HHHHHHHT-CSEEEECTT
T ss_pred CcEEEEecCchhhccCchHHHHH-HHHHHHCC-CCeEEECCC
Confidence 444433322 2233221111 33566665 545888854
No 41
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=96.97 E-value=0.00068 Score=54.50 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=42.0
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc---cCCCCCHHHHHHHHHHH
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~---k~~~~~~~~R~~Ml~la 85 (146)
.++++++ |+||=.|.||+.+++.|++..+ ..|+.-+.+|..-... .+...+.++|+++++.+
T Consensus 21 g~~V~~v--gtfdgLH~GH~sLI~~A~~~ad---~vVVSffvnP~qf~~~ed~~~yp~tle~d~~lL~~~ 85 (280)
T 2ejc_A 21 KKTIGFV--PTMGYLHEGHLSLVRRARAEND---VVVVSIFVNPTQFGPNEDYERYPRDFERDRKLLEKE 85 (280)
T ss_dssp TCCEEEE--EECSCCCHHHHHHHHHHHHHSS---EEEEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHTT
T ss_pred CCEEEEE--cCCccccHHHHHHHHHHHHhCC---EEEEEEeCChHHhcCCcccccCCCCHHHHHHHHHHC
Confidence 3566664 7999999999999999999863 4444333344321111 13467899999998763
No 42
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.83 E-value=0.013 Score=50.98 Aligned_cols=108 Identities=7% Similarity=-0.067 Sum_probs=66.7
Q ss_pred hcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC
Q 032168 11 SLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD 90 (146)
Q Consensus 11 ~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~ 90 (146)
|+..+..+-++|+. | =|-||+|.||.++++.+..... +.+.+.|- +.+ .|.+-++++-|++-.+.+++..|
T Consensus 155 r~~~~~~gw~~v~a-f-qtrnp~Hrah~~~~~~~~~~~~-~~lll~pl-~g~-----~k~~d~~~~~r~~~~~~~~~~~p 225 (552)
T 3cr8_A 155 RALFVRRGWRRIIA-W-QARQPMHRAQYEFCLKSAIENE-ANLLLHPQ-VGG-----DITEAPAYFGLVRSFLAIRDRFP 225 (552)
T ss_dssp HHHHHHTTCCSEEE-E-CCSSCCCHHHHHHHHHHHHHTT-CEEEECCB-CCC-----CTTTCTTHHHHHHHHHHHGGGSC
T ss_pred HHHHHhcCCCceEE-E-ecCCCCchHHHHHHHHHHHhcC-CeEEEEec-cCC-----CCCCCCCHHHHHHHHHHHHHhCC
Confidence 44444444467777 4 8999999999999999886543 55655443 222 25678999999999999999876
Q ss_pred C--eE--EecccccCCCccchHHHHHH-HHHHcCCCCeeeeeccc
Q 032168 91 F--IM--VDPWEANQSGYQRTLTVLSR-VKNFLIEAGLISTGMDH 130 (146)
Q Consensus 91 ~--i~--v~~~E~~~~~~~yT~~tl~~-l~~~~p~~~~~liG~D~ 130 (146)
. +. +-.++..-.+|.. ..+.. +++.| ++..||+|-|.
T Consensus 226 ~~~~~l~~~p~~m~~agpre--a~~ha~~r~n~-G~th~ivGrdh 267 (552)
T 3cr8_A 226 AATTQLSLLPAPPPEASGRA--LLLRAIVARNF-GCSLLIAGGEH 267 (552)
T ss_dssp GGGEEECBBCSCCCCSCSHH--HHHHHHHHHHH-TCSEEEC----
T ss_pred CccEEEeecchhhcccCcHH--HHHHHHHHHhC-CCCeeeeCCCC
Confidence 4 33 2333333334322 23333 34444 66669999874
No 43
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.49 E-value=0.017 Score=51.12 Aligned_cols=107 Identities=12% Similarity=-0.019 Sum_probs=69.9
Q ss_pred cccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhC-----CCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 032168 14 SKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLN-----SEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (146)
Q Consensus 14 ~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~-----~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~ 88 (146)
.+..+=++|+.+ =|-||+|+||-.|.+.|++.+. .+.+.+.|- +.++ |.+-++++-|++-.+..++.
T Consensus 407 f~~~gw~~Vvaf--qtrNP~HraHe~l~~~a~~~~~d~g~~~~~lll~pl-~G~t-----k~~di~~~~r~~~~~~~~~~ 478 (630)
T 1x6v_B 407 FKDMNADAVSAF--QLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPL-GGWT-----KDDDVPLMWRMKQHAAVLEE 478 (630)
T ss_dssp HHHTTCSEEEEE--EESSCCCHHHHHHHHHHHHHHHHHTCSSEEEEEEEB-CSCC-----CTTSCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCeEEEE--ecCCCccHHHHHHHHHHHHHHHhhccCCCcEEEEeC-cCCC-----CCCCCCHHHHHHHHHHHHHc
Confidence 334444677773 4899999999999999987531 113555543 2333 56789999999999999985
Q ss_pred --CC--CeEEeccccc--CCCccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 89 --SD--FIMVDPWEAN--QSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 89 --~~--~i~v~~~E~~--~~~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
.| .+.+..+... -.||. =..+-.+-.+.-++..||+|-|.
T Consensus 479 ~y~p~~~~~l~~~p~~mryaGPr--Ea~~hai~rkN~Gcth~IVGrdh 524 (630)
T 1x6v_B 479 GVLNPETTVVAIFPSPMMYAGPT--EVQWHCRARMVAGANFYIVGRDP 524 (630)
T ss_dssp TSSCGGGEEECCBCCCCCCCHHH--HHHHHHHHHHHTTCSEEEECSST
T ss_pred CCCCCcceEEeeccchhhhcCcH--HHHHHHHHHHhCCCCeEEECCCC
Confidence 34 4666555442 22332 22344434455577779999884
No 44
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=93.59 E-value=0.15 Score=40.95 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=38.5
Q ss_pred ceEEE--EeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc---cCCCCCHHHHHHHHHHH
Q 032168 20 TYVVL--VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (146)
Q Consensus 20 ~~i~l--lfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~---k~~~~~~~~R~~Ml~la 85 (146)
++|++ -.|+ +|.||..+++.|++..+ ..|+.-+.+|..=... .+...+.++++++++.+
T Consensus 23 ~~I~fVpTmG~----lH~GH~~LI~~a~~~a~---~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~ 86 (283)
T 3ag6_A 23 TTIGFIPTMGA----LHDGHLTMVRESVSTND---ITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEV 86 (283)
T ss_dssp CCEEEEEECSS----CCHHHHHHHHHHHTTSS---EEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHH
T ss_pred CcEEEEECCcc----ccHHHHHHHHHHHHhCC---EEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhC
Confidence 45555 3353 99999999999999863 4444434444331111 13478899999999875
No 45
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=91.66 E-value=0.56 Score=37.40 Aligned_cols=50 Identities=22% Similarity=0.166 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc---cCCCCCHHHHHHHHHHH
Q 032168 33 PTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (146)
Q Consensus 33 ~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~---k~~~~~~~~R~~Ml~la 85 (146)
+|.||..+++.|++.. ...|+.-+.+|..-... .+...+.++|+++++.+
T Consensus 28 lH~GH~~Li~~A~~~a---~~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~~ 80 (276)
T 1v8f_A 28 LHRGHLALVERARREN---PFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA 80 (276)
T ss_dssp CCHHHHHHHHHHHHHC---SEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhC---CEEEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHhC
Confidence 9999999999999986 34344333344321100 13478899999999874
No 46
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=91.63 E-value=0.4 Score=38.95 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=42.6
Q ss_pred CcceEEE--EeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 032168 18 GKTYVVL--VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (146)
Q Consensus 18 ~k~~i~l--lfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~---~k~~~~~~~~R~~Ml~la 85 (146)
..++|++ -.|| .|.||+.+++.|++.. .+.|+.-+++|..=+. ..+...+.+..+++++.+
T Consensus 41 ~g~~IgfVPTMG~----LH~GHlsLi~~A~~~~---d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~ 106 (314)
T 3inn_A 41 QGKKIGFVPTMGY----LHKGHLELVRRARVEN---DVTLVSIFVNPLQFGANEDLGRYPRDLERDAGLLHDA 106 (314)
T ss_dssp TTCCEEEEEECSS----CCHHHHHHHHHHHHHC---SEEEEEECCCGGGSCTTSSTTTCCCCHHHHHHHHHHT
T ss_pred cCCeEEEEcCCCc----cCHHHHHHHHHHHHhC---CEEEEEECCChhhcCCCccccccCCCHHHHHHHHHhC
Confidence 3456777 4343 8999999999999985 4556666677754111 123567889999998875
No 47
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=90.45 E-value=0.51 Score=38.12 Aligned_cols=50 Identities=10% Similarity=0.057 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHH-hhCCCcEEEEecccCCCCcccc---cCCCCCHHHHHHHHHHH
Q 032168 33 PTFMHLRMFELARD-TLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (146)
Q Consensus 33 ~H~GHl~l~~~a~~-~~~~d~v~vvp~~~~p~~~~~~---k~~~~~~~~R~~Ml~la 85 (146)
.|.||+.+++.|++ .. .+.|+.-+.+|..=... .+...+.++++++++.+
T Consensus 44 LH~GH~sLI~~A~~~~a---~~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~~ 97 (301)
T 3cov_A 44 LHEGHLALVRAAKRVPG---SVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE 97 (301)
T ss_dssp CCHHHHHHHHHHHTSTT---EEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhcC---CEEEEEEcCChhhcCCccccccCCCCHHHHHHHHHhC
Confidence 99999999999998 65 44455444455431111 12478899999998874
No 48
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=88.65 E-value=0.51 Score=37.81 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=42.9
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~---~k~~~~~~~~R~~Ml~la 85 (146)
.++|+++ .|..=.|.||+.+++.|++.. | ..|+.-+.+|..=.. ..+...+.++++++++.+
T Consensus 21 g~~ig~V--PTMG~LH~GH~sLi~~A~~~~--d-~vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~~ 85 (283)
T 3uk2_A 21 QNRTAFV--PTMGNLHEGHLSLMRLARQHG--D-PVVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQKE 85 (283)
T ss_dssp CSSCEEE--EECSSCCHHHHHHHHHHHTTC--S-SEEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHTT
T ss_pred CCeEEEE--CCCCcccHHHHHHHHHHHHhC--C-EEEEEEcCCHHHcCCcccccccCCCHHHHHHHHHHc
Confidence 4567775 777889999999999999986 3 334444455543110 124578899999998764
No 49
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=86.84 E-value=0.9 Score=36.44 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=41.4
Q ss_pred CcceEEEE-eCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc---cCCCCCHHHHHHHHHHH
Q 032168 18 GKTYVVLV-ATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (146)
Q Consensus 18 ~k~~i~ll-fGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~---k~~~~~~~~R~~Ml~la 85 (146)
..++|+++ ..|. .|.||+.+++.|++.. .+.|+.-+++|..=+.. .+...+.+.=+++++.+
T Consensus 23 ~g~~IgfVPTMG~---LH~GHlsLv~~Ar~~~---d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~~l~~~ 88 (287)
T 3q12_A 23 EGKRIALVPTMGN---LHEGHMTLVDEAKTRA---DVVVVTIFVNPLQFERPDDLAHYPRTLQEDCEKLTRH 88 (287)
T ss_dssp TTCCEEEEEECSS---CCHHHHHHHHHHHTTS---SEEEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHH
T ss_pred cCCeEEEEcCCCc---ccHHHHHHHHHHHHhC---CEEEEEeccCcccCCCcchhhcCCCCHHHHHHHHHHC
Confidence 34567773 1333 9999999999999985 45567777888642111 12456777777887775
No 50
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=84.74 E-value=1 Score=35.78 Aligned_cols=63 Identities=8% Similarity=0.092 Sum_probs=42.1
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc---cCCCCCHHHHHHHHHHH
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~---k~~~~~~~~R~~Ml~la 85 (146)
..++|+++ -|-.=.|.||+.+++.|++.. .+.|+.-+++|..=+.. .+...+.+.=+++++.+
T Consensus 22 ~g~~ig~V--PTMGaLH~GHlsLv~~Ar~~~---d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~ 87 (264)
T 3n8h_A 22 KQQKIGFV--PTMGALHNGHISLIKKAKSEN---DVVIVSIFVNPTQFNNPNDYQTYPNQLQQDIQILASL 87 (264)
T ss_dssp TTSCEEEE--EECSSCCHHHHHHHHHHHHHC---SEEEEEECCCGGGCSCHHHHHHSCCCHHHHHHHHHHT
T ss_pred CCCcEEEE--CCCcchhHHHHHHHHHHHHhC---CEEEEEEccCcccCCCcchhhcCCCCHHHHHHHHHHC
Confidence 34577776 344457999999999999986 35567667787642111 12356677777777765
No 51
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=76.48 E-value=3.4 Score=33.01 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=39.9
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc---cCCCCCHHHHHHHHHHH
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~---k~~~~~~~~R~~Ml~la 85 (146)
..++|+++ . |=.=.|.||+.+++.|++ . .+.|+.-+++|..=+.. .+...+.+.=+++++.+
T Consensus 23 ~g~~Ig~V-P-TMGaLH~GHlsLv~~Ar~-~---d~VVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~ 87 (285)
T 3mxt_A 23 HQLSIGYV-P-TMGFLHDGHLSLVKHAKT-Q---DKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDN 87 (285)
T ss_dssp TTCCEEEE-E-ECSSCCHHHHHHHHHHTT-S---SEEEEEECCCGGGCCTTSCTTTSCCCHHHHHHHHHHT
T ss_pred cCCeEEEE-c-CCCcccHHHHHHHHHHHh-C---CEEEEEeccCccccCCchhhhcCCCCHHHHHHHHHHC
Confidence 34567775 1 111289999999999998 5 35566667777642111 23456777778887765
No 52
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=73.35 E-value=34 Score=27.44 Aligned_cols=99 Identities=9% Similarity=0.114 Sum_probs=53.9
Q ss_pred hhhcccc-----cCCcceEEEEeCCCC-c-hhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHH
Q 032168 9 KLSLESK-----TQGKTYVVLVATGSF-N-PPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINL 81 (146)
Q Consensus 9 ~~~~~~~-----~~~k~~i~llfGGSF-n-P~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~M 81 (146)
+|.+|++ .+++.+|++++.|+. | |.-..|..=++.+.+.++ +++.++ +..+. .+.++..+.
T Consensus 11 ~~~~~~~g~~~~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G-~~~~~~--~~e~~---------~~~~d~~~~ 78 (356)
T 3s99_A 11 TLEAQTQGPGSMAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG-DKVETT--FLENV---------AEGADAERS 78 (356)
T ss_dssp ---------------CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT-TTEEEE--EECSC---------CTTHHHHHH
T ss_pred ceecccCCcccccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC-CceEEE--EEecC---------CCHHHHHHH
Confidence 4455553 455678999998766 3 888999999999988886 234332 11111 112345567
Q ss_pred HHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeee
Q 032168 82 CNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLIST 126 (146)
Q Consensus 82 l~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~li 126 (146)
++.+++..-.+.+.. +..+ -+.+....++||+..|.++
T Consensus 79 l~~l~~~g~d~Ii~~------g~~~-~~~~~~vA~~~Pdv~fv~i 116 (356)
T 3s99_A 79 IKRIARAGNKLIFTT------SFGY-MDPTVKVAKKFPDVKFEHA 116 (356)
T ss_dssp HHHHHHTTCSEEEEC------SGGG-HHHHHHHHTTCTTSEEEEE
T ss_pred HHHHHHCCCCEEEEC------CHHH-HHHHHHHHHHCCCCEEEEE
Confidence 777776544443331 2222 2456677778898876333
No 53
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=71.26 E-value=20 Score=28.35 Aligned_cols=100 Identities=6% Similarity=-0.048 Sum_probs=54.0
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCC--CcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeE
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNS--EGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIM 93 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~--d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~ 93 (146)
.+.+.+++++ ||.-|.. +.-.+.+++.+..+. .+|.|||+... +.+.-.+..+.+++....-.
T Consensus 23 ~~~~g~l~ii-GGgedk~--~~~~i~~~~v~lagg~~~~I~~IptAs~------------~~~~~~~~~~~~f~~lG~~~ 87 (291)
T 3en0_A 23 LSSQPAILII-GGAEDKV--HGREILQTFWSRSGGNDAIIGIIPSASR------------EPLLIGERYQTIFSDMGVKE 87 (291)
T ss_dssp -CCSCCEEEE-CSSCCSS--SCCHHHHHHHHHTTGGGCEEEEECTTCS------------SHHHHHHHHHHHHHHHCCSE
T ss_pred CCCCceEEEE-ECCCCcc--ChHHHHHHHHHHcCCCCCeEEEEeCCCC------------ChHHHHHHHHHHHHHcCCCe
Confidence 3445667775 8888733 334567777777754 36777875311 12223334455665544323
Q ss_pred EecccccCCCccchHHHHHHHHHHcCCCCe-eeeeccchHHH
Q 032168 94 VDPWEANQSGYQRTLTVLSRVKNFLIEAGL-ISTGMDHMQKF 134 (146)
Q Consensus 94 v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l~~l 134 (146)
|...++........-+.++.++ +++. |+-|.|++.-+
T Consensus 88 v~~L~i~~r~~a~~~~~~~~l~----~ad~I~v~GGnt~~l~ 125 (291)
T 3en0_A 88 LKVLDIRDRAQGDDSGYRLFVE----QCTGIFMTGGDQLRLC 125 (291)
T ss_dssp EEECCCCSGGGGGCHHHHHHHH----HCSEEEECCSCHHHHH
T ss_pred eEEEEecCccccCCHHHHHHHh----cCCEEEECCCCHHHHH
Confidence 4434442211122234455555 3467 89999988777
No 54
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=64.32 E-value=33 Score=24.88 Aligned_cols=59 Identities=10% Similarity=-0.099 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccch
Q 032168 73 ISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHM 131 (146)
Q Consensus 73 ~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l 131 (146)
....+|.+=.+.+++..+.+.+.............++.++.+-+.+|+.+.++...|..
T Consensus 140 ~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~ 198 (276)
T 3ksm_A 140 ASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETPTIDGLFTPNEST 198 (276)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCSCCCEEECCSHHH
T ss_pred hhHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEECCchh
Confidence 45688999999999988777765332222333445667777777777766555555543
No 55
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=60.44 E-value=21 Score=26.34 Aligned_cols=102 Identities=9% Similarity=0.036 Sum_probs=58.1
Q ss_pred cceEEEEeCCCCchh----------hHHHHHHHHHHHHhh-CCC-----cEEEEecccCCCCcccccCCCCCHHHHHHHH
Q 032168 19 KTYVVLVATGSFNPP----------TFMHLRMFELARDTL-NSE-----GYCVIGGYMSPVNDAYKKRGLISAEHRINLC 82 (146)
Q Consensus 19 k~~i~llfGGSFnP~----------H~GHl~l~~~a~~~~-~~d-----~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml 82 (146)
..+++++ +...+.. ..|=..+++++.+.+ +.. ++.++.+ + .......+|.+=.
T Consensus 89 ~iPvV~~-~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g---~-------~~~~~~~~R~~gf 157 (293)
T 3l6u_A 89 GIPVFAI-DRMIRSDAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITG---T-------ANVYTTNERHRGF 157 (293)
T ss_dssp TCCEEEE-SSCCCCTTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEEC---S-------TTCHHHHHHHHHH
T ss_pred CCCEEEe-cCCCCCCcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEEC---C-------CCCchHHHHHHHH
Confidence 4677774 6655431 123334455555543 333 5655532 1 1224568899999
Q ss_pred HHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccch
Q 032168 83 NLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHM 131 (146)
Q Consensus 83 ~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l 131 (146)
+.+++..|.+.+.............++.++.+-+.+|+.+.+++..|..
T Consensus 158 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~ 206 (293)
T 3l6u_A 158 LKGIENEPTLSIVDSVSGNYDPVTSERVMRQVIDSGIPFDAVYCHNDDI 206 (293)
T ss_dssp HHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHTTCCCSEEEESSHHH
T ss_pred HHHHHhCCCcEEeeeccCCCCHHHHHHHHHHHHHhCCCCCEEEECCchH
Confidence 9999988777665422222233345667777777777666555555643
No 56
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=55.70 E-value=10 Score=31.86 Aligned_cols=38 Identities=16% Similarity=-0.027 Sum_probs=23.7
Q ss_pred CcceEEEEeCCCC--chhhHHHHHHH------HHHHHhhCCCcEEEE
Q 032168 18 GKTYVVLVATGSF--NPPTFMHLRMF------ELARDTLNSEGYCVI 56 (146)
Q Consensus 18 ~k~~i~llfGGSF--nP~H~GHl~l~------~~a~~~~~~d~v~vv 56 (146)
...++.++.+|-- +|+|.||+.-+ .+.++..+. +|.++
T Consensus 19 ~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~-~V~~v 64 (461)
T 1li5_A 19 HAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGY-KLKYV 64 (461)
T ss_dssp STTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTC-EEEEE
T ss_pred CCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCC-CEEEe
Confidence 3455666667755 99999999842 333444443 56655
No 57
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=51.88 E-value=68 Score=23.54 Aligned_cols=84 Identities=15% Similarity=0.069 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhC-CCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHH
Q 032168 38 LRMFELARDTLN-SEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKN 116 (146)
Q Consensus 38 l~l~~~a~~~~~-~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~ 116 (146)
..+++++.+.++ ..++.++.+ + ....+..+|.+=.+.++++.+.+.+.............++.++.+-+
T Consensus 110 ~~a~~~L~~~~gg~~~I~~i~g---~-------~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 179 (283)
T 2ioy_A 110 EMAAEFIAKALKGKGNVVELEG---I-------PGASAARDRGKGFDEAIAKYPDIKIVAKQAADFDRSKGLSVMENILQ 179 (283)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEC---C-------TTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCceEEEEEC---C-------CCCccHHHHHHHHHHHHHhCCCCEEEeeccCCCCHHHHHHHHHHHHH
Confidence 334566666543 456666633 1 11234578999889999887666543211111112223455666666
Q ss_pred HcCCCCeeeeeccch
Q 032168 117 FLIEAGLISTGMDHM 131 (146)
Q Consensus 117 ~~p~~~~~liG~D~l 131 (146)
.+|+...+++..|.+
T Consensus 180 ~~~~~~ai~~~nD~~ 194 (283)
T 2ioy_A 180 AQPKIDAVFAQNDEM 194 (283)
T ss_dssp HCSCCCEEEESSHHH
T ss_pred hCCCccEEEECCchH
Confidence 666655455556643
No 58
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=51.33 E-value=26 Score=27.81 Aligned_cols=43 Identities=16% Similarity=0.078 Sum_probs=33.7
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccC
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMS 61 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~ 61 (146)
.|++|+++||| .-+=|--=+.-+..+.+.+..+++.+++-.+.
T Consensus 2 ~~~~v~vl~GG-~S~E~evSl~S~~~v~~al~~~~~~v~~i~i~ 44 (364)
T 3i12_A 2 AKLRVGIVFGG-KSAEHEVSLQSAKNIVDAIDKTRFDVVLLGID 44 (364)
T ss_dssp CCEEEEEEEEC-SSTTHHHHHHHHHHHHHHSCTTTEEEEEEEEC
T ss_pred CccEEEEEecc-CCCCccchHHHHHHHHHHHhhcCCeEEEEEEC
Confidence 36789999888 67778888888889999887777777665543
No 59
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=50.80 E-value=13 Score=30.54 Aligned_cols=39 Identities=5% Similarity=-0.011 Sum_probs=23.3
Q ss_pred cceEEEEeCCCC--chhhHHHHHHH------HHHHHhhCCCcEEEEec
Q 032168 19 KTYVVLVATGSF--NPPTFMHLRMF------ELARDTLNSEGYCVIGG 58 (146)
Q Consensus 19 k~~i~llfGGSF--nP~H~GHl~l~------~~a~~~~~~d~v~vvp~ 58 (146)
..++.++.+|-+ +|+|.||+.-+ .+.++..+ -+|..+.+
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G-~~V~~~~~ 83 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAG-HTVQYVQN 83 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-CEEEEEEE
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcC-CCEEeCCC
Confidence 345566667766 89999999742 23344444 35655544
No 60
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=47.83 E-value=32 Score=27.14 Aligned_cols=44 Identities=9% Similarity=0.130 Sum_probs=27.5
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCC
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSP 62 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p 62 (146)
+|+||+++|||. -+=|.==+.-+..+.+.++..++.+++.++.+
T Consensus 2 ~kkkv~vl~GG~-S~E~evSl~Sa~~v~~aL~~~gy~v~~i~i~~ 45 (357)
T 4fu0_A 2 QNKKIAVIFGGN-STEYEVSLQSASAVFENINTNKFDIIPIGITR 45 (357)
T ss_dssp CCEEEEEEEECS-STTHHHHHHHHHHHHHHSCTTTEEEEEEEECT
T ss_pred CCCEEEEEECCC-ccchHHHHHHHHHHHHHHhHhCCEEEEEEEeC
Confidence 357899988884 22233224445666777776677777765544
No 61
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=47.65 E-value=6 Score=33.95 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=22.0
Q ss_pred hhhhcccc----cCCcceEEEEeCCCCc---hhhHHHHHHH------HHHHHhhCCCcEEEEec
Q 032168 8 EKLSLESK----TQGKTYVVLVATGSFN---PPTFMHLRMF------ELARDTLNSEGYCVIGG 58 (146)
Q Consensus 8 ~~~~~~~~----~~~k~~i~llfGGSFn---P~H~GHl~l~------~~a~~~~~~d~v~vvp~ 58 (146)
.+|-+|+. .++++++.+ .+.+.+ |+|.||+.-+ .+.++..+ .+|.++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~i-~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G-~~V~~~~g 71 (564)
T 3kfl_A 10 GTLEAQTQGPGSMKKQKVFFA-TTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKG-EEVFVMTG 71 (564)
T ss_dssp --------------CCCCEEE-EEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred chhhhhhcCCccccCCCCEEE-eCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-CcEEEecC
Confidence 45666764 223345555 466655 9999999742 22233444 35665544
No 62
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=46.51 E-value=34 Score=23.22 Aligned_cols=41 Identities=27% Similarity=0.239 Sum_probs=30.0
Q ss_pred CCcceEEEEeC-CCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 17 QGKTYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 17 ~~k~~i~llfG-GSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
++|.++++.|. +++.|+=...+..++.+.+.++-+++.|+.
T Consensus 27 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~ 68 (161)
T 3drn_A 27 IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIG 68 (161)
T ss_dssp TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEE
T ss_pred cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEE
Confidence 45444777788 999999888888888877777544576664
No 63
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=45.55 E-value=34 Score=27.65 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=33.5
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccC
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMS 61 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~ 61 (146)
|++|+++||| ..+=|.-=+.-+..+.+.++.+++.+++-.+.
T Consensus 37 ~~~v~vl~GG-~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~ 78 (383)
T 3k3p_A 37 KETLVLLYGG-RSAERDVSVLSAESVMRAINYDNFLVKTYFIT 78 (383)
T ss_dssp CEEEEEEEEC-SSTTHHHHHHHHHHHHHHSCTTTEEEEEEEEC
T ss_pred CCeEEEEeCC-CCCcchHHHHHHHHHHHHhhhcCCEEEEEEec
Confidence 5689999888 67778888899999999988777777765544
No 64
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=44.60 E-value=91 Score=22.96 Aligned_cols=83 Identities=22% Similarity=0.125 Sum_probs=43.3
Q ss_pred HHHHHHHHhhC--CCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHH
Q 032168 39 RMFELARDTLN--SEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKN 116 (146)
Q Consensus 39 ~l~~~a~~~~~--~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~ 116 (146)
..++++.+.++ ..+|-++.+. ....+..+|.+=.+.+++..+.+.+...........-.++.++.+-+
T Consensus 120 ~a~~~L~~~~G~~~~~I~~i~g~----------~~~~~~~~R~~Gf~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~ll~ 189 (288)
T 1gud_A 120 KGASFIIDKLGAEGGEVAIIEGK----------AGNASGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQ 189 (288)
T ss_dssp HHHHHHHHHHGGGCEEEEEEECS----------TTCHHHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEeCC----------CCCchHhHHHHHHHHHHHhCCCcEEEEeecCCccHHHHHHHHHHHHH
Confidence 34555566544 4566666431 11234578998888888877666543211111111223455566555
Q ss_pred HcCCCCeeeeeccch
Q 032168 117 FLIEAGLISTGMDHM 131 (146)
Q Consensus 117 ~~p~~~~~liG~D~l 131 (146)
.+|+.+-++++.|.+
T Consensus 190 ~~~~~~ai~~~nD~~ 204 (288)
T 1gud_A 190 RNPNIKAIYCANDTM 204 (288)
T ss_dssp HCTTCCEEEESSHHH
T ss_pred hCCCceEEEECCCch
Confidence 565544445555543
No 65
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=44.52 E-value=38 Score=27.29 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=33.0
Q ss_pred hhhhcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccC
Q 032168 8 EKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMS 61 (146)
Q Consensus 8 ~~~~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~ 61 (146)
+||..|- .-+|++|+++||| .-+=|--=+.-+..+.+.+..+++.+++-.+.
T Consensus 12 ~~~~~~~-~m~~~~v~vl~GG-~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~ 63 (386)
T 3e5n_A 12 ENLYFQG-HMRKIRVGLIFGG-KSAEHEVSLQSARNILDALDPQRFEPVLIGID 63 (386)
T ss_dssp ----------CCEEEEEEEEC-SSTTHHHHHHHHHHHHHHSCTTTEEEEEEEEC
T ss_pred ccchhhh-hcCCceEEEEecc-CCCCchhHHHHHHHHHHHhCccCCEEEEEEEC
Confidence 3444443 2246789999888 67778777788888888887677777665544
No 66
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=44.14 E-value=52 Score=21.48 Aligned_cols=38 Identities=5% Similarity=0.096 Sum_probs=30.4
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|.+|.+|+-...+..++.+.+.++-+++.|+.
T Consensus 33 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~ 70 (143)
T 4fo5_A 33 RYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCS 70 (143)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEE
T ss_pred CEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEE
Confidence 57788899999999888888888888877655677764
No 67
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=43.54 E-value=13 Score=31.41 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=14.2
Q ss_pred hhhhcccccCCc---ceEEEEeCCCC---chhhHHHHHH
Q 032168 8 EKLSLESKTQGK---TYVVLVATGSF---NPPTFMHLRM 40 (146)
Q Consensus 8 ~~~~~~~~~~~k---~~i~llfGGSF---nP~H~GHl~l 40 (146)
.+|-+|...++. +++.+ .|.+. +|+|.||+.-
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i-~~p~pypng~lHiGH~r~ 47 (536)
T 4dlp_A 10 GTLEAQTQGPGSMSREKYYI-TTAIAYPNGKPHIGHAYE 47 (536)
T ss_dssp --------------CCEEEE-EECCBCCSSCCCHHHHHH
T ss_pred ccccccccCCCcCCCCCEEE-eCCCCCCCCCcCcchhHH
Confidence 355666654333 24444 57776 5999999975
No 68
>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A
Probab=42.80 E-value=23 Score=26.69 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=23.8
Q ss_pred ceEEE-EeCCCCchh-hHHHH----HHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVL-VATGSFNPP-TFMHL----RMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~l-lfGGSFnP~-H~GHl----~l~~~a~~~~~~d~v~vvp 57 (146)
++++| -+.|.|-|. +.-|+ ..+....+..+.|+|+.+-
T Consensus 70 KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~kGvd~I~ciS 113 (199)
T 4h86_A 70 KKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVT 113 (199)
T ss_dssp SEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHSCCCEEEEEE
T ss_pred CeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhcCCcEEEEEE
Confidence 34444 359999999 67777 2333333445678887663
No 69
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=42.16 E-value=59 Score=22.45 Aligned_cols=40 Identities=10% Similarity=-0.032 Sum_probs=31.8
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecc
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGY 59 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~ 59 (146)
+.+++.|.+|..|+=...+..++.+.+.++-+++.|+...
T Consensus 39 k~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is 78 (180)
T 3kij_A 39 KVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFP 78 (180)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEE
T ss_pred CEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEE
Confidence 4778889999999988888888888888865567776543
No 70
>3tvz_A Putative uncharacterized protein YHGC; putative monooxygenase, ABM family, ferredoxin fold, monooxy oxidoreductase; 2.00A {Bacillus subtilis subsp}
Probab=41.96 E-value=16 Score=26.45 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHcCCCCe-eeeeccc
Q 032168 106 RTLTVLSRVKNFLIEAGL-ISTGMDH 130 (146)
Q Consensus 106 yT~~tl~~l~~~~p~~~~-~liG~D~ 130 (146)
-|.+.|+.++++||+.++ ++-++|+
T Consensus 14 Gt~~~L~~i~~~~~~~~l~l~~~~~~ 39 (172)
T 3tvz_A 14 GTADFLKTIVKKHPSENILLMQGQEN 39 (172)
T ss_dssp ECHHHHHHHHHHCTTSEEEEEEESSC
T ss_pred CCHHHHHHHHHHCCCCceEEEEcCCc
Confidence 489999999999999999 6667775
No 71
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=41.94 E-value=51 Score=22.97 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=29.2
Q ss_pred CCcceEEEEeC-CCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 17 QGKTYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 17 ~~k~~i~llfG-GSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
++| .++++|. +++.|+=...+.-++.+.+.++-+++.|+.
T Consensus 50 ~Gk-~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~ 90 (179)
T 3ixr_A 50 TNQ-WLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLG 90 (179)
T ss_dssp TTS-EEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred CCC-CEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEE
Confidence 343 6677677 999999888888888887777655666653
No 72
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=41.36 E-value=93 Score=23.40 Aligned_cols=83 Identities=10% Similarity=-0.070 Sum_probs=45.2
Q ss_pred HHHHHHHHhh-CCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHH
Q 032168 39 RMFELARDTL-NSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNF 117 (146)
Q Consensus 39 ~l~~~a~~~~-~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~ 117 (146)
.+++++.+.+ +..++.++.+ + .......+|.+=.+.+++..|.+.+.............++.++.+-+.
T Consensus 116 ~a~~~L~~~~~G~~~I~~i~~---~-------~~~~~~~~R~~Gf~~al~~~pg~~~~~~~~~~~~~~~~~~~~~~ll~~ 185 (325)
T 2x7x_A 116 SVGNYIASSLKGKGNIVELTG---L-------SGSTPAMERHQGFMAAISKFPDIKLIDKADAAWERGPAEIEMDSMLRR 185 (325)
T ss_dssp HHHHHHHHHTTTEEEEEEEES---C-------TTSHHHHHHHHHHHHHHHTCTEEEEEEEEECTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCceEEEEEC---C-------CCCccHHHHHHHHHHHHHhCCCCEEEeeecCCCCHHHHHHHHHHHHHh
Confidence 3455555542 4445655533 1 111345789988888898876766543211111122245666777667
Q ss_pred cCCCCeeeeeccch
Q 032168 118 LIEAGLISTGMDHM 131 (146)
Q Consensus 118 ~p~~~~~liG~D~l 131 (146)
+|+.+.+++..|.+
T Consensus 186 ~~~~~aI~~~nd~~ 199 (325)
T 2x7x_A 186 HPKIDAVYAHNDRI 199 (325)
T ss_dssp CSCCCEEEESSTTH
T ss_pred CCCCCEEEECCCch
Confidence 77655555556644
No 73
>2kwa_A Kinase A inhibitor; bacterial signal transduction, KIPI, histidine kinase inhibi bacillus subtilis, transferase inhibitor; NMR {Bacillus subtilis}
Probab=40.95 E-value=66 Score=20.79 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=30.1
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcE-EEEecccC
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGY-CVIGGYMS 61 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v-~vvp~~~~ 61 (146)
.-+.+-||...|+-....+.-+..+++.....+| .++|++.|
T Consensus 15 ~allVefg~~id~~~~~~v~al~~~L~~~~~~Gv~EiVPa~~S 57 (101)
T 2kwa_A 15 SAMMIRFGEEINEQVNGIVHAAAAYIEEQPFPGFIECIPAFTS 57 (101)
T ss_dssp SEEEEECCCSSCHHHHHHHHHHHHHHHHSCCTTEEEEEECSSE
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHHHHccCCCCeEEeccCceE
Confidence 3456668998999887776666666666666675 58999754
No 74
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=40.59 E-value=41 Score=28.72 Aligned_cols=37 Identities=16% Similarity=-0.007 Sum_probs=24.8
Q ss_pred eEEEEeCCCC--chhhHHHHHH------HHHHHHhhCCCcEEEEec
Q 032168 21 YVVLVATGSF--NPPTFMHLRM------FELARDTLNSEGYCVIGG 58 (146)
Q Consensus 21 ~i~llfGGSF--nP~H~GHl~l------~~~a~~~~~~d~v~vvp~ 58 (146)
++.++.+|=. |++|.||..- +.+.++..+ -+|.++++
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~G-y~V~~v~n 86 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLG-YKVNYAMN 86 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcC-CceeEEee
Confidence 6677777755 9999999764 344455555 35766654
No 75
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=40.50 E-value=24 Score=29.74 Aligned_cols=42 Identities=12% Similarity=-0.014 Sum_probs=25.9
Q ss_pred cCCcceEEEEeCC--CCchhhHHHHHHH------HHHHHhhCCCcEEEEec
Q 032168 16 TQGKTYVVLVATG--SFNPPTFMHLRMF------ELARDTLNSEGYCVIGG 58 (146)
Q Consensus 16 ~~~k~~i~llfGG--SFnP~H~GHl~l~------~~a~~~~~~d~v~vvp~ 58 (146)
+....++.++.+| -.+++|.||+... .+.++..+ -+|.++.+
T Consensus 20 p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~G-y~V~~v~n 69 (462)
T 3tqo_A 20 PIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRG-YEVTFVRN 69 (462)
T ss_dssp CSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred cCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcC-CceEEecC
Confidence 3344566666666 5788999998753 23344444 35766655
No 76
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=39.70 E-value=34 Score=28.06 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=21.3
Q ss_pred hhhhcccccCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 8 EKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 8 ~~~~~~~~~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
.+|-+|..+|.+|+|.++ ||. -..| +++..+.+..+.+.+.+.|+
T Consensus 10 ~~~~~~~~~p~~m~ilvl-G~g----gre~-ala~~l~~s~~v~~v~~~pg 54 (442)
T 3lp8_A 10 GTLEAQTQGPGSMNVLVI-GSG----GREH-SMLHHIRKSTLLNKLFIAPG 54 (442)
T ss_dssp ----------CCEEEEEE-ECS----HHHH-HHHHHHTTCTTEEEEEEEEC
T ss_pred cceecccCCCCCCEEEEE-CCC----hHHH-HHHHHHHhCCCCCEEEEECC
Confidence 355666679999999997 666 2333 34444444444456777765
No 77
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=38.43 E-value=52 Score=21.91 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=29.6
Q ss_pred CCcceEEEEe-CCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 17 QGKTYVVLVA-TGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 17 ~~k~~i~llf-GGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
.+++.+++.| ++++.|+=...+..++.+.+.++-+++.|+.
T Consensus 34 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~ 75 (160)
T 1xvw_A 34 RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALA 75 (160)
T ss_dssp TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEE
T ss_pred cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEE
Confidence 4444677777 5999999888888788877777545676664
No 78
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=37.82 E-value=25 Score=29.89 Aligned_cols=42 Identities=12% Similarity=-0.031 Sum_probs=23.6
Q ss_pred ccCCcceEEEEeCCCC---chhhHHHHHHHHH------HHHhhCCCcEEEEec
Q 032168 15 KTQGKTYVVLVATGSF---NPPTFMHLRMFEL------ARDTLNSEGYCVIGG 58 (146)
Q Consensus 15 ~~~~k~~i~llfGGSF---nP~H~GHl~l~~~------a~~~~~~d~v~vvp~ 58 (146)
+++++.+..+. ++.. +|+|.||+.-.-. .++..+ .+|.++++
T Consensus 13 ~~~~~~~~~v~-~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G-~~V~~~~g 63 (560)
T 3h99_A 13 MTQVAKKILVT-CASPYANGSIHLGHMLEHIQADVWVRYQRMRG-HEVNFICA 63 (560)
T ss_dssp ----CCEEEEE-ECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-CEEEEEEE
T ss_pred CCCCCCcEEEe-CCCCCCCCCcchhhHHHHHHHHHHHHHHHHcC-CeEEEeee
Confidence 46777787774 6655 4899999985332 223333 35666655
No 79
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=37.55 E-value=79 Score=20.15 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=30.6
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
..+.+++.|.++..|+-...+..++...+.+..+++.|+.
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~ 72 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVT 72 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEE
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4467778789999999877777778877777655777664
No 80
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=36.20 E-value=58 Score=21.72 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=29.4
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
+.+++.|.+|..|+=...+..++.+.+.++-+++.|+..
T Consensus 32 k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v 70 (169)
T 2v1m_A 32 HVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAF 70 (169)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 567777899999998778887888777775445776643
No 81
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=35.78 E-value=76 Score=20.84 Aligned_cols=39 Identities=8% Similarity=0.028 Sum_probs=30.0
Q ss_pred cceEEEEeCCCCchh--hHHHHHHHHHHHHhh-CCCcEEEEe
Q 032168 19 KTYVVLVATGSFNPP--TFMHLRMFELARDTL-NSEGYCVIG 57 (146)
Q Consensus 19 k~~i~llfGGSFnP~--H~GHl~l~~~a~~~~-~~d~v~vvp 57 (146)
.+.+++.|.+|.+|+ -...+..+..+.+.+ +-+++.|+.
T Consensus 33 gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~ 74 (150)
T 3fw2_A 33 QKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLG 74 (150)
T ss_dssp TSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred CCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 357788889999999 788888888888777 545577664
No 82
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=35.76 E-value=92 Score=20.41 Aligned_cols=39 Identities=5% Similarity=0.021 Sum_probs=29.8
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
.+.+++.|.++..|+=...+..++.+.+.+..+++.|+.
T Consensus 24 gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~ 62 (151)
T 3raz_A 24 APVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVG 62 (151)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEE
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 357777789999999777777778877777556677664
No 83
>4ae5_A Signal transduction protein trap; signaling protein, phosphorylation, RNAIII, quorum SENS biofilm, toxin production; 1.85A {Staphylococcus aureus}
Probab=35.45 E-value=24 Score=25.69 Aligned_cols=25 Identities=20% Similarity=0.042 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHcCCCCe-eeeeccc
Q 032168 106 RTLTVLSRVKNFLIEAGL-ISTGMDH 130 (146)
Q Consensus 106 yT~~tl~~l~~~~p~~~~-~liG~D~ 130 (146)
-|.+.|+.+++.||+.++ ++-++|+
T Consensus 9 Gt~~~L~~I~~~~~~r~l~l~~~~d~ 34 (167)
T 4ae5_A 9 GTYGFLHQIKINNPTHQLFQFSASDT 34 (167)
T ss_dssp ECHHHHHHHHHHCTTSCCEEEECSSS
T ss_pred CCHHHHHHHHHHCCCCceEEEEcCCc
Confidence 488999999999999999 5567664
No 84
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=35.06 E-value=70 Score=21.08 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=30.1
Q ss_pred ceEEEEeCCCCchhhHHH-HHHHHHHHHhhCCCcEEEEec
Q 032168 20 TYVVLVATGSFNPPTFMH-LRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GH-l~l~~~a~~~~~~d~v~vvp~ 58 (146)
+.+++.|.++..|+-..+ +..++.+.+.++-+++.|+..
T Consensus 31 k~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v 70 (160)
T 3lor_A 31 KVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGL 70 (160)
T ss_dssp SEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEE
T ss_pred CEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEE
Confidence 577777899999998886 777788877776556777644
No 85
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=34.42 E-value=76 Score=20.87 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=30.3
Q ss_pred ceEEEEeCCCCchhhHHH-HHHHHHHHHhhCCCcEEEEecc
Q 032168 20 TYVVLVATGSFNPPTFMH-LRMFELARDTLNSEGYCVIGGY 59 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GH-l~l~~~a~~~~~~d~v~vvp~~ 59 (146)
+.+++.|.++..|+=... +..++.+.+.++-+++.|+...
T Consensus 29 k~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~ 69 (158)
T 3eyt_A 29 KVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLH 69 (158)
T ss_dssp SEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEE
T ss_pred CEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEE
Confidence 567777899999998776 7777777777765678777543
No 86
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=34.41 E-value=97 Score=20.38 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=29.9
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|.++..|+=...+..++...+.++-+++.|+.
T Consensus 35 k~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~ 72 (165)
T 3or5_A 35 KAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVG 72 (165)
T ss_dssp CEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEE
T ss_pred CEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 56777789999999888888888888877655576664
No 87
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=33.75 E-value=98 Score=20.13 Aligned_cols=39 Identities=8% Similarity=0.147 Sum_probs=29.9
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
.+.+++.|.++..|+=...+..++.+.+.+.-+++.|+.
T Consensus 28 gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~ 66 (154)
T 3kcm_A 28 GQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLC 66 (154)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEE
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 357777789999999888888888888877645676664
No 88
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=33.44 E-value=1.4e+02 Score=21.73 Aligned_cols=58 Identities=14% Similarity=0.008 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccch
Q 032168 74 SAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHM 131 (146)
Q Consensus 74 ~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l 131 (146)
...+|.+=.+.+++..|.+.+.............++.++.+-+.+|+.+.+++..|..
T Consensus 145 ~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~~d~~ 202 (290)
T 2fn9_A 145 PTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAM 202 (290)
T ss_dssp HHHHHHHHHHHHHTTSTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHH
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEeccCCCCHHHHHHHHHHHHHhCCCCcEEEECCchH
Confidence 4578999999999988666554221111112234566777777777666555556643
No 89
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=33.44 E-value=98 Score=20.03 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=29.0
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCC-CcEEEEe
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNS-EGYCVIG 57 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~-d~v~vvp 57 (146)
.+.+++.|.++..|+-...+..++.+.+.++- +++.|+.
T Consensus 28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~ 67 (144)
T 1i5g_A 28 GKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVML 67 (144)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEE
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 35778889999999988888777777777653 4666653
No 90
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=33.27 E-value=1.5e+02 Score=22.01 Aligned_cols=81 Identities=11% Similarity=-0.022 Sum_probs=42.7
Q ss_pred HHHHHHHHhh-CCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHH
Q 032168 39 RMFELARDTL-NSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNF 117 (146)
Q Consensus 39 ~l~~~a~~~~-~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~ 117 (146)
.+++++.+.+ +..+|-++.+. .......+|.+=.+.+++. +.+.+.............++.++.+.+.
T Consensus 111 ~a~~~L~~~~~G~~~I~~i~~~----------~~~~~~~~R~~gf~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (313)
T 2h3h_A 111 TAGLIMKELLGGKGKVVIGTGS----------LTAMNSLQRIQGFKDAIKD-SEIEIVDILNDEEDGARAVSLAEAALNA 179 (313)
T ss_dssp HHHHHHHHHHTSCSEEEEEESC----------SSCHHHHHHHHHHHHHHTT-SSCEEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEEEECC----------CCCccHHHHHHHHHHHhcC-CCCEEEEeecCCCCHHHHHHHHHHHHHH
Confidence 3445555553 44567666431 1123457888888888887 4555432111111222345666666666
Q ss_pred cCCCCeeeeeccc
Q 032168 118 LIEAGLISTGMDH 130 (146)
Q Consensus 118 ~p~~~~~liG~D~ 130 (146)
+|+.+.+++..|.
T Consensus 180 ~~~~~ai~~~~d~ 192 (313)
T 2h3h_A 180 HPDLDAFFGVYAY 192 (313)
T ss_dssp CTTCCEEEECSTT
T ss_pred CcCceEEEEcCCC
Confidence 7665544444454
No 91
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=32.61 E-value=73 Score=20.75 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=28.4
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
.+.+++.|.++..|+=...+..++...+.+.-+++.|+.
T Consensus 28 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~ 66 (152)
T 3gl3_A 28 GSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVA 66 (152)
T ss_dssp TSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 357777789999999877777777777776544466653
No 92
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=32.52 E-value=1e+02 Score=20.03 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=29.0
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhC-CCcEEEEe
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLN-SEGYCVIG 57 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~-~d~v~vvp 57 (146)
.+.+++.|.++..|+-...+..++.+.+.+. .+++.|+.
T Consensus 28 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~ 67 (146)
T 1o8x_A 28 GKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVF 67 (146)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEE
T ss_pred CCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEE
Confidence 3567788899999998888877787777765 24666653
No 93
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=32.43 E-value=58 Score=21.80 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=27.7
Q ss_pred CCcceEEEEeC-CCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 17 QGKTYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 17 ~~k~~i~llfG-GSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
++| .++++|. |++.|+-..++.-+..+.+.++-+++.|+.
T Consensus 34 ~gk-~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~ 74 (163)
T 3gkn_A 34 AGH-WLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILG 74 (163)
T ss_dssp TTS-CEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCC-cEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 444 5555566 599999888888888887776544565553
No 94
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=32.33 E-value=1.1e+02 Score=23.17 Aligned_cols=58 Identities=10% Similarity=-0.008 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccc
Q 032168 73 ISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDH 130 (146)
Q Consensus 73 ~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~ 130 (146)
....+|.+=.+.+++..+.+.+.............++.++.+-+.+|+.+.++...|.
T Consensus 158 ~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~ 215 (350)
T 3h75_A 158 PAAQLRERGLRRALAEHPQVHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDE 215 (350)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHH
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECChH
Confidence 4568899888888888776443322222223334566677777777765544444553
No 95
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=32.13 E-value=1e+02 Score=20.17 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=28.8
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
.+.+++.|.++..|+=...+..++.+.+.+.-+++.|+.
T Consensus 29 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~ 67 (152)
T 2lrn_A 29 GKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYG 67 (152)
T ss_dssp TSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEE
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEE
Confidence 356777789999999777777777777777644576664
No 96
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=31.85 E-value=1.3e+02 Score=22.65 Aligned_cols=83 Identities=12% Similarity=-0.007 Sum_probs=44.4
Q ss_pred HHHHHHHHHh-hCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHH
Q 032168 38 LRMFELARDT-LNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKN 116 (146)
Q Consensus 38 l~l~~~a~~~-~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~ 116 (146)
..+++++.+. .+..+|.++.+ + .......+|.+=.+.+++..|.+.+.............++.++.+-+
T Consensus 123 ~~a~~~L~~~~~G~~~I~~i~g---~-------~~~~~~~~R~~Gf~~al~~~pgi~~~~~~~~~~~~~~~~~~~~~ll~ 192 (332)
T 2rjo_A 123 EETATQLFKSMGGKGGVVALGG---I-------FSNVPAIERKAGLDAALKKFPGIQLLDFQVADWNSQKAFPIMQAWMT 192 (332)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEC---C-------TTCHHHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEEC---C-------CCCccHHHHHHHHHHHHHhCCCcEEEeeccCCCCHHHHHHHHHHHHH
Confidence 3445555554 34456666633 1 11234578998888899888777665321111112224555666666
Q ss_pred H-cCCCCeeeeeccc
Q 032168 117 F-LIEAGLISTGMDH 130 (146)
Q Consensus 117 ~-~p~~~~~liG~D~ 130 (146)
. .|+.+.+++..|.
T Consensus 193 ~~~~~~~aI~~~nd~ 207 (332)
T 2rjo_A 193 RFNSKIKGVWAANDD 207 (332)
T ss_dssp HHGGGEEEEEESSHH
T ss_pred hcCCCeeEEEECCCc
Confidence 5 5544444455554
No 97
>3fj2_A Monooxygenase-like protein; structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS unknown function; HET: MSE; 1.85A {Listeria innocua} PDB: 3fez_A*
Probab=31.81 E-value=30 Score=25.57 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHcCCCCe-eeeeccc
Q 032168 106 RTLTVLSRVKNFLIEAGL-ISTGMDH 130 (146)
Q Consensus 106 yT~~tl~~l~~~~p~~~~-~liG~D~ 130 (146)
-|.+.|+.++++||+.++ ++-++|.
T Consensus 28 Gt~~~L~~I~~~~~dr~l~l~~~~~~ 53 (186)
T 3fj2_A 28 GTEHYLRQLMENYIGENVTLLQNFSQ 53 (186)
T ss_dssp ECHHHHHHHHHHTCSSSEEEEECSSC
T ss_pred CCHHHHHHHHHHCCCCceEEEEcCCc
Confidence 489999999999999999 5567664
No 98
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=31.77 E-value=91 Score=21.27 Aligned_cols=38 Identities=8% Similarity=0.173 Sum_probs=29.0
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|.++..|+=...+..++.+.+.++.+++.|+.
T Consensus 61 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~ 98 (186)
T 1jfu_A 61 KTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVA 98 (186)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEE
T ss_pred CEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEE
Confidence 56777789999998777777777877777645676664
No 99
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=31.37 E-value=1.1e+02 Score=19.75 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=28.2
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhC-CCcEEEEe
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLN-SEGYCVIG 57 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~-~d~v~vvp 57 (146)
.+.+++.|.++..|+-..-+..++.+.+.++ .+++.|+.
T Consensus 28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~ 67 (144)
T 1o73_A 28 GKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVL 67 (144)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEE
T ss_pred CCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 3567788999999998777777777777665 24566553
No 100
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=31.15 E-value=73 Score=21.95 Aligned_cols=42 Identities=7% Similarity=-0.002 Sum_probs=29.8
Q ss_pred CCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 17 ~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
++|..+++.|.++..|+-...+..++.+.+.+.-+++.|+..
T Consensus 44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v 85 (196)
T 2ywi_A 44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAI 85 (196)
T ss_dssp CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 344447888999999998877777777777665334666543
No 101
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=30.98 E-value=70 Score=23.11 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=27.2
Q ss_pred ceEEEEeC-CCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfG-GSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|. +|+.|+=...+.-+..+.+.++-+++.|+.
T Consensus 49 k~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~ 87 (211)
T 2pn8_A 49 KYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVA 87 (211)
T ss_dssp SEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEE
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 46777788 999998777776666666666545677664
No 102
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=30.64 E-value=1.2e+02 Score=20.08 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=30.4
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
+.+++.|.++..|+=...+..++.+.+.+..+++.++..
T Consensus 42 k~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v 80 (158)
T 3hdc_A 42 KIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAV 80 (158)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEE
T ss_pred CEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEE
Confidence 577777899999997777777888888776567777654
No 103
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=30.62 E-value=1.1e+02 Score=22.48 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=25.0
Q ss_pred CcceEEE-EeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 18 GKTYVVL-VATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 18 ~k~~i~l-lfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
++..+++ +|.++|.|+=.-.+.-+..+.+.++-.++.|+.
T Consensus 30 Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~ 70 (224)
T 1prx_A 30 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIA 70 (224)
T ss_dssp TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred CCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4434444 459999999655665555666655445677664
No 104
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=30.16 E-value=92 Score=24.08 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=26.2
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEecccCC
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSP 62 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p 62 (146)
|++|++++|| .-+=|.-=+.-+..+.+.+...++.+++...++
T Consensus 3 ~~~v~vl~gG-~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~ 45 (343)
T 1e4e_A 3 RIKVAILFGG-CSEEHDVSVKSAIEIAANINKEKYEPLYIGITK 45 (343)
T ss_dssp CEEEEEEEEC-SSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECT
T ss_pred CcEEEEEeCC-CCCCcchhHHHHHHHHHHhhhcCCEEEEEEEcC
Confidence 6789998776 344454444455666667765666666544444
No 105
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=29.37 E-value=96 Score=22.27 Aligned_cols=42 Identities=7% Similarity=0.074 Sum_probs=31.1
Q ss_pred CCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 17 ~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
++|..+++.|.+++.|+=...+..++.+.+.+.-+++.|+..
T Consensus 57 ~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~V 98 (218)
T 3u5r_E 57 KDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAI 98 (218)
T ss_dssp TTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEE
T ss_pred CCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 444447888999999998888888888888776555776643
No 106
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=29.15 E-value=99 Score=19.78 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=29.8
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhh-CCCcEEEEe
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTL-NSEGYCVIG 57 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~-~~d~v~vvp 57 (146)
.+.+++.|.++.+|+=...+..++.+.+.+ .-+++.|+.
T Consensus 33 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~ 72 (148)
T 3fkf_A 33 NRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLG 72 (148)
T ss_dssp TSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEE
T ss_pred CcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEE
Confidence 367778889999999888888888888777 544576664
No 107
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=29.06 E-value=40 Score=23.09 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=24.1
Q ss_pred ceEEEEeC-CCCchhhH-HHHHHHHHHHHhhCCCcEE-EE
Q 032168 20 TYVVLVAT-GSFNPPTF-MHLRMFELARDTLNSEGYC-VI 56 (146)
Q Consensus 20 ~~i~llfG-GSFnP~H~-GHl~l~~~a~~~~~~d~v~-vv 56 (146)
+.+++.|. |+|.|+=. .++.-+....+.++.+++. |+
T Consensus 36 k~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv 75 (162)
T 1tp9_A 36 KKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEIL 75 (162)
T ss_dssp SEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEE
T ss_pred CcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
Confidence 45666566 99999977 7777666666655333454 44
No 108
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=28.94 E-value=86 Score=21.61 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=28.9
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|.+|..|+=...+..++.+.+.++-+++.|+.
T Consensus 50 k~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~ 87 (181)
T 2p31_A 50 SVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLA 87 (181)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEE
Confidence 57778889999999887777777777777544576664
No 109
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=28.79 E-value=77 Score=22.98 Aligned_cols=38 Identities=26% Similarity=0.266 Sum_probs=28.5
Q ss_pred ceEEEEeC-CCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfG-GSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|. |++.|+=...+.-++.+.+.++-+++.|+.
T Consensus 70 k~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~ 108 (222)
T 3ztl_A 70 KYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIA 108 (222)
T ss_dssp SEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEE
T ss_pred CeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEE
Confidence 46677677 799999888888888877777545576664
No 110
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=28.49 E-value=20 Score=23.82 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=8.4
Q ss_pred EEEeCCCCchh
Q 032168 23 VLVATGSFNPP 33 (146)
Q Consensus 23 ~llfGGSFnP~ 33 (146)
-+.||||++|-
T Consensus 46 ~m~fgGs~~P~ 56 (114)
T 3djh_A 46 LMAFGGSSEPC 56 (114)
T ss_dssp EEEETTBCSSC
T ss_pred eEEEcCcCCCE
Confidence 35689999883
No 111
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=28.33 E-value=90 Score=21.46 Aligned_cols=38 Identities=8% Similarity=0.005 Sum_probs=29.3
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|.+|..|+=...+..++.+.+.++-+++.|+.
T Consensus 48 k~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~ 85 (183)
T 2obi_A 48 FVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILA 85 (183)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEE
Confidence 56778889999999888888888887777544576664
No 112
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=28.12 E-value=79 Score=21.05 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=28.7
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|.++..|+=...+..++.+.+.+.-+++.|+.
T Consensus 36 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~ 73 (152)
T 2lrt_A 36 KVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQ 73 (152)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEE
Confidence 56778789999999887787777777776534576664
No 113
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=28.00 E-value=91 Score=21.57 Aligned_cols=39 Identities=8% Similarity=-0.021 Sum_probs=29.4
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
+.+++.|.+|..|+=...+..++.+.+.++-+++.|+..
T Consensus 50 k~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~i 88 (185)
T 2gs3_A 50 FVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAF 88 (185)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 567777899999998788887888777775445776643
No 114
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=27.97 E-value=52 Score=21.22 Aligned_cols=39 Identities=13% Similarity=-0.089 Sum_probs=29.0
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
.+.+++.|.++..|+-...+..++.+.+.+.-+++.|+.
T Consensus 31 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~ 69 (148)
T 3hcz_A 31 AKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYA 69 (148)
T ss_dssp CSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEE
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEE
Confidence 356777789999999877777777777777544476664
No 115
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=27.54 E-value=46 Score=22.17 Aligned_cols=25 Identities=4% Similarity=-0.000 Sum_probs=18.0
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHHHH
Q 032168 21 YVVLVATGSFNPPTFMHLRMFELARD 46 (146)
Q Consensus 21 ~i~llfGGSFnP~H~GHl~l~~~a~~ 46 (146)
++.++|-|+++| ++|+..+++.+..
T Consensus 2 ~~~i~~~G~~~~-~Kg~~~li~a~~~ 26 (166)
T 3qhp_A 2 PFKIAMVGRYSN-EKNQSVLIKAVAL 26 (166)
T ss_dssp CEEEEEESCCST-TTTHHHHHHHHHT
T ss_pred ceEEEEEeccch-hcCHHHHHHHHHH
Confidence 345557899988 6888877776654
No 116
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=27.34 E-value=92 Score=21.75 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=29.0
Q ss_pred ceEEEEeC-CCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfG-GSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|. +++.|+=...+..++.+.+.++-+++.|+.
T Consensus 46 k~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~ 84 (195)
T 2bmx_A 46 KWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILG 84 (195)
T ss_dssp CEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEE
T ss_pred CcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEE
Confidence 56778788 999999888888877777776544676664
No 117
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=27.08 E-value=96 Score=20.57 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=28.6
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
+.+++.|.++..|+=...+..++.+.+.++-+++.|+..
T Consensus 33 k~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v 71 (170)
T 2p5q_A 33 KVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAF 71 (170)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEE
Confidence 567778899999987777777777777765445777643
No 118
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=27.05 E-value=1.1e+02 Score=22.39 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=26.1
Q ss_pred CCcceEEEE-eCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 17 QGKTYVVLV-ATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 17 ~~k~~i~ll-fGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
.++..++++ |.++|.|+=.-.+.-+..+.+.++..++.|+..
T Consensus 29 ~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~v 71 (220)
T 1xcc_A 29 IENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGF 71 (220)
T ss_dssp TTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEE
T ss_pred cCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 344345554 489999996556655666666554456777643
No 119
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=26.80 E-value=94 Score=22.38 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=28.9
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|.+|..|+-...+-.++.+.+.++-+++.|+.
T Consensus 48 k~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~ 85 (208)
T 2f8a_A 48 KVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLG 85 (208)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEE
Confidence 56788899999999888777777777766544576664
No 120
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=25.85 E-value=73 Score=21.61 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=28.5
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
+.+++.|.+|..|+-. -+..++.+.+.++-+++.|+..
T Consensus 33 k~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~v 70 (171)
T 3cmi_A 33 KVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGF 70 (171)
T ss_dssp CEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEE
T ss_pred CEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEE
Confidence 5677778999999988 7777777777775445776643
No 121
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=25.58 E-value=1e+02 Score=21.71 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=27.2
Q ss_pred ceEEEEeC-CCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfG-GSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|. +++.|+=...+..+..+.+.++-.++.|+.
T Consensus 37 k~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~ 75 (202)
T 1uul_A 37 KWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLA 75 (202)
T ss_dssp SEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEE
T ss_pred CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 46777788 999999777777777766666434676664
No 122
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=25.49 E-value=39 Score=29.46 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=15.8
Q ss_pred CcceEEEEeCCCCc---hhhHHHHHH
Q 032168 18 GKTYVVLVATGSFN---PPTFMHLRM 40 (146)
Q Consensus 18 ~k~~i~llfGGSFn---P~H~GHl~l 40 (146)
+.++|++. -.|-| |+|.||++-
T Consensus 117 ~~~~V~ve-~~spN~~~~~HiGH~Rs 141 (629)
T 2zue_A 117 KGKKVIVE-HTSVNPTKPLHMGHARN 141 (629)
T ss_dssp TTCEEEEE-CCCCCTTSCCBHHHHHH
T ss_pred CCCEEEEE-eeCCCCCCCCccchhHH
Confidence 34567664 66666 789999985
No 123
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=25.42 E-value=68 Score=23.53 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=26.9
Q ss_pred ceEEEEeC-CCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfG-GSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|. +|+.|+=...+.-+..+.+.++-+++.|+.
T Consensus 57 k~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~ 95 (221)
T 2c0d_A 57 KYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLG 95 (221)
T ss_dssp CEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEE
T ss_pred CeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEE
Confidence 46777788 999999777776666666665434676664
No 124
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=25.31 E-value=1.3e+02 Score=19.47 Aligned_cols=38 Identities=5% Similarity=0.024 Sum_probs=26.9
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|.++..|+=...+..++.+.+.+.-+++.|+.
T Consensus 29 k~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~ 66 (153)
T 2l5o_A 29 KVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLA 66 (153)
T ss_dssp CEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEE
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEE
Confidence 56777789999999766666677776666544576653
No 125
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=25.19 E-value=1.2e+02 Score=20.23 Aligned_cols=43 Identities=12% Similarity=-0.014 Sum_probs=29.5
Q ss_pred ceEEEEeCCCCchh-hHHHHHHHHHHHHhhC----CCcEEEEecccCC
Q 032168 20 TYVVLVATGSFNPP-TFMHLRMFELARDTLN----SEGYCVIGGYMSP 62 (146)
Q Consensus 20 ~~i~llfGGSFnP~-H~GHl~l~~~a~~~~~----~d~v~vvp~~~~p 62 (146)
+.+++.|.+|.+|+ -...+..++.+.+.++ .+++.|+...+.|
T Consensus 27 k~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~ 74 (171)
T 2rli_A 27 QWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDP 74 (171)
T ss_dssp SEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCS
T ss_pred CEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECC
Confidence 56788889999997 6777777777766663 2467776543333
No 126
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=25.10 E-value=36 Score=29.30 Aligned_cols=20 Identities=25% Similarity=0.149 Sum_probs=14.8
Q ss_pred eEEEEeCCC--CchhhHHHHHH
Q 032168 21 YVVLVATGS--FNPPTFMHLRM 40 (146)
Q Consensus 21 ~i~llfGGS--FnP~H~GHl~l 40 (146)
+|.+.|+|- -+|+|.||++-
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~ 125 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRN 125 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHH
Confidence 677765553 36899999984
No 127
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=24.61 E-value=88 Score=21.60 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=27.7
Q ss_pred ceEEEEeC-CCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfG-GSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|. +|+.|+=..++..++.+.+.++-+++.|+.
T Consensus 32 k~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~ 70 (187)
T 1we0_A 32 KWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYS 70 (187)
T ss_dssp SEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEE
Confidence 56777788 999999777777777777666434566654
No 128
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=24.53 E-value=1.2e+02 Score=19.85 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=28.0
Q ss_pred ceEEEEeCCCCchh-hHHHHHHHHHHHHhhCC----CcEEEEecc
Q 032168 20 TYVVLVATGSFNPP-TFMHLRMFELARDTLNS----EGYCVIGGY 59 (146)
Q Consensus 20 ~~i~llfGGSFnP~-H~GHl~l~~~a~~~~~~----d~v~vvp~~ 59 (146)
+.+++.|.+|.+|+ -...+..++.+.+.++- +++.|+...
T Consensus 24 k~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs 68 (164)
T 2ggt_A 24 QWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFIS 68 (164)
T ss_dssp CEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEE
T ss_pred CEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEE
Confidence 56777889999997 67777777777666532 467666433
No 129
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=24.43 E-value=1.2e+02 Score=19.79 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=26.8
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
.+.+++.|.++..|+=...+..++.+.+.++-+++.|+.
T Consensus 26 gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~ 64 (151)
T 2f9s_A 26 GKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVA 64 (151)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 356777789999998666666666666666433566653
No 130
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=24.07 E-value=34 Score=28.00 Aligned_cols=48 Identities=17% Similarity=0.095 Sum_probs=26.4
Q ss_pred hhhhcccccCCcceEEEEeCCCCch---hhHHHHHHHHHHHHhh--CCCcEEEEec
Q 032168 8 EKLSLESKTQGKTYVVLVATGSFNP---PTFMHLRMFELARDTL--NSEGYCVIGG 58 (146)
Q Consensus 8 ~~~~~~~~~~~k~~i~llfGGSFnP---~H~GHl~l~~~a~~~~--~~d~v~vvp~ 58 (146)
+.|+..++. +..++.++ .| |+| +|.||+..+....... +.+-+.+|..
T Consensus 27 e~L~~~L~~-~~~p~~vy-~G-~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D 79 (394)
T 2dlc_X 27 QIIKDVLEV-QKRHLKLY-WG-TAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLAD 79 (394)
T ss_dssp HHHHHHHHT-SCSCCEEE-EE-ECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECH
T ss_pred HHHHHHHHc-cCCCeEEE-EE-eCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcC
Confidence 345555533 33454453 34 777 7999998776554443 3233445554
No 131
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=23.86 E-value=40 Score=16.72 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=11.3
Q ss_pred eEEEEeCCCCchhhHH
Q 032168 21 YVVLVATGSFNPPTFM 36 (146)
Q Consensus 21 ~i~llfGGSFnP~H~G 36 (146)
.+.++-|-.+||+|-.
T Consensus 6 lvylldgpgydpihcd 21 (26)
T 4a1x_C 6 LVYLLDGPGYDPIHCD 21 (26)
T ss_pred EEEEecCCCCCceecc
Confidence 4556667789999853
No 132
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=23.86 E-value=1.8e+02 Score=20.98 Aligned_cols=82 Identities=10% Similarity=0.026 Sum_probs=43.1
Q ss_pred HHHHHHHHhhC-CCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHH
Q 032168 39 RMFELARDTLN-SEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNF 117 (146)
Q Consensus 39 ~l~~~a~~~~~-~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~ 117 (146)
.+++++.+.++ ..++.++.+. .......+|.+=.+.+++..+...+..... .......++.++.+-+.
T Consensus 119 ~~~~~L~~~~G~~~~i~~i~~~----------~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~~~l~~ 187 (289)
T 3brs_A 119 RIGAVTKNLVRKSGKIGVISFV----------KNSKTAMDREEGLKIGLSDDSNKIEAIYYC-DSNYDKAYDGTVELLTK 187 (289)
T ss_dssp HHHHHHHHHTSSSCEEEEEESC----------TTSHHHHHHHHHHHHHHGGGGGGEEEEEEC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCceEEEEECC----------CCCccHHHHHHHHHHHHHhCCCcEEeeecC-CCCHHHHHHHHHHHHHh
Confidence 35566666544 5677666431 112345789888888888765321111111 11222245566666666
Q ss_pred cCCCCeeeeeccch
Q 032168 118 LIEAGLISTGMDHM 131 (146)
Q Consensus 118 ~p~~~~~liG~D~l 131 (146)
+|+.+.+++..|..
T Consensus 188 ~~~~~ai~~~~d~~ 201 (289)
T 3brs_A 188 YPDISVMVGLNQYS 201 (289)
T ss_dssp CTTEEEEEESSHHH
T ss_pred CCCceEEEECCCcc
Confidence 66544455556643
No 133
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=23.71 E-value=1.3e+02 Score=20.87 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=26.7
Q ss_pred ceEEEEeC-CCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 20 TYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 20 ~~i~llfG-GSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
+.+++.|. +++.|+=...+..+..+.+.+.-+++.|+..
T Consensus 35 k~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~I 74 (197)
T 1qmv_A 35 KYVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLGCEVLGV 74 (197)
T ss_dssp SEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEE
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 46777788 9999987666666666666664346766643
No 134
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=23.44 E-value=54 Score=27.11 Aligned_cols=37 Identities=11% Similarity=0.015 Sum_probs=21.8
Q ss_pred ceEEEEeCCCC---chhhHHHHHHH------HHHHHhhCCCcEEEEec
Q 032168 20 TYVVLVATGSF---NPPTFMHLRMF------ELARDTLNSEGYCVIGG 58 (146)
Q Consensus 20 ~~i~llfGGSF---nP~H~GHl~l~------~~a~~~~~~d~v~vvp~ 58 (146)
+++.+ .|.+. +|+|.||+.-. .+.++..| ..|..++|
T Consensus 3 ~~~~i-~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G-~~V~~~~g 48 (500)
T 2d5b_A 3 KVFYV-TTPIYYVNAEPHLGHAYTTVVADFLARWHRLDG-YRTFFLTG 48 (500)
T ss_dssp CEEEE-ECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTT-CEEEEEEE
T ss_pred CcEEE-ecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCC-Cceeeecc
Confidence 44455 47776 78999999742 22223333 35666665
No 135
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=23.32 E-value=60 Score=22.66 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=25.8
Q ss_pred ceEEEEeC-CCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfG-GSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|. +++.|+=..++..+..+.+.++-+++.|+.
T Consensus 32 k~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~ 70 (192)
T 2h01_A 32 KYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLG 70 (192)
T ss_dssp CEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEE
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 56777788 999999666666666665555334566664
No 136
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=23.11 E-value=2.2e+02 Score=20.77 Aligned_cols=57 Identities=11% Similarity=0.031 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCeeeeeccch
Q 032168 73 ISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGMDHM 131 (146)
Q Consensus 73 ~~~~~R~~Ml~lai~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~~liG~D~l 131 (146)
....+|.+=.+.+++.. .+.+...+. .......+..++.+-+.+|+.+.++...|..
T Consensus 143 ~~~~~R~~Gf~~~l~~~-g~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~ 199 (297)
T 3rot_A 143 IGLEKRAYGIKTILQDK-GIFFEELDV-GTDPNQVQSRVKSYFKIHPETNIIFCLTSQA 199 (297)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEEEEEC-CSCHHHHHHHHHHHHHHCTTCCEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHhc-CCeEEEeec-CCChHHHHHHHHHHHHhCCCCCEEEEcCCcc
Confidence 45678988888888876 455443321 2223345666777677777766555555544
No 137
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=22.76 E-value=1.4e+02 Score=18.95 Aligned_cols=37 Identities=8% Similarity=-0.067 Sum_probs=26.9
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|.++..|+-......++.+.+.++-+ +.|+.
T Consensus 30 k~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~ 66 (148)
T 2b5x_A 30 KPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ-LNVVA 66 (148)
T ss_dssp SCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEE
T ss_pred CEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC-cEEEE
Confidence 56677789999999877777777777766533 66554
No 138
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=22.57 E-value=1.2e+02 Score=19.33 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=25.2
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHH---HHHhhCCCcEEEEe
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFEL---ARDTLNSEGYCVIG 57 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~---a~~~~~~d~v~vvp 57 (146)
.+.+++.|.++..|+-...+..+.. ..+.+.-.++.|+.
T Consensus 27 gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~ 68 (142)
T 3ewl_A 27 AQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLA 68 (142)
T ss_dssp CSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEE
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEE
Confidence 3677888999999998777555444 44444323466653
No 139
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=22.48 E-value=96 Score=21.55 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=28.6
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|.++..|+=...+..++.+.+.++-+++.|+.
T Consensus 49 k~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~ 86 (190)
T 2vup_A 49 SPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 86 (190)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred CEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEE
Confidence 56777789999999878888888887777534466653
No 140
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=22.43 E-value=1.1e+02 Score=21.26 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=25.9
Q ss_pred ceEEEEeC-CCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfG-GSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|- +|+.|+=..++.-+..+.+.++-+++.|+.
T Consensus 31 k~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~ 69 (186)
T 1n8j_A 31 RWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYS 69 (186)
T ss_dssp SEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEE
Confidence 35566554 799998777777777776666444676664
No 141
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=22.42 E-value=90 Score=23.32 Aligned_cols=31 Identities=16% Similarity=-0.093 Sum_probs=17.1
Q ss_pred CcceEEEEeCCCCchhhHHHHHHHHHHHHhh
Q 032168 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTL 48 (146)
Q Consensus 18 ~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~ 48 (146)
.+++.+.+||||=++...-....++..-+.+
T Consensus 11 ~~m~~IaV~cGS~~~~~~~y~~~A~~lg~~L 41 (215)
T 2a33_A 11 SKFRRICVFCGSSQGKKSSYQDAAVDLGNEL 41 (215)
T ss_dssp CSCSEEEEECCSSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCchHHHHHHHHHHHHH
Confidence 3455444478888765543455555554444
No 142
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=22.32 E-value=39 Score=26.58 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=22.0
Q ss_pred cCCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEec
Q 032168 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (146)
Q Consensus 16 ~~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~ 58 (146)
.++++..-++|||||---.. --.|++...+.. + .|.+.++
T Consensus 176 ~~~~k~~d~iyggsfrsg~r-e~kmve~lfdtg-l-~ieffg~ 215 (351)
T 1jg7_A 176 KPTKKTLDVIYGGSFRSGQR-ESKMVEFLFDTG-L-NIEFFGN 215 (351)
T ss_dssp CCCCCCEEEEEECCCGGGTT-HHHHHHHHSSCS-S-CEEEESS
T ss_pred CCccceeeeeeccccccCch-HHHHHHHHHhcC-c-ceeeecc
Confidence 44444444447999975433 345677766542 2 3555443
No 143
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*
Probab=21.55 E-value=67 Score=24.86 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=39.6
Q ss_pred eCCCC--chhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc-cCCCCCHHHHHHHHHHHhcC
Q 032168 26 ATGSF--NPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK-KRGLISAEHRINLCNLACKS 88 (146)
Q Consensus 26 fGGSF--nP~H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~-k~~~~~~~~R~~Ml~lai~~ 88 (146)
..||| ||+ |+ -+-+..++++++...+-.+.+|+.+-++. ..+-+++++=+++++..-+.
T Consensus 196 saGS~FknP~--g~--~Ag~LIe~~GlkG~~~G~a~vs~kha~fivN~g~ata~dv~~L~~~v~~~ 257 (268)
T 2gqt_A 196 SAGCAFKNPP--GQ--SAGRLIDERGLKGLRVGDAMISLEHGNFIVNLGQARAKDVLELVRRVQEE 257 (268)
T ss_dssp SSSCCBCCCT--TC--CHHHHHHHTTCTTCEETTEEECSSCTTCEEECSSCCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCC--Cc--hHHHHHHHcCCCCCccCCeEECcccCCeEEECCCCCHHHHHHHHHHHHHH
Confidence 56777 997 44 35667788888888776666677664443 23467888888887775444
No 144
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=21.53 E-value=1.4e+02 Score=19.53 Aligned_cols=39 Identities=13% Similarity=0.010 Sum_probs=27.1
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
.+.+++.|.++..|+=......++.+.+.+..+++.|+.
T Consensus 38 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~ 76 (164)
T 2h30_A 38 DKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLIT 76 (164)
T ss_dssp TSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEE
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEE
Confidence 356777789999999766666666666665445566654
No 145
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=21.35 E-value=1.2e+02 Score=20.35 Aligned_cols=46 Identities=13% Similarity=-0.043 Sum_probs=20.1
Q ss_pred hhcccccCCcceEEEEeCCCCc-h-hhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 10 LSLESKTQGKTYVVLVATGSFN-P-PTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 10 ~~~~~~~~~k~~i~llfGGSFn-P-~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+..-++..+..+++++++||.. . +..+...++ .++..++ .++.++.
T Consensus 11 ~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~-~al~~~~-~~~~~~~ 58 (170)
T 2o6l_A 11 MEDFVQSSGENGVVVFSLGSMVSNMTEERANVIA-SALAQIP-QKVLWRF 58 (170)
T ss_dssp HHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHH-HHHTTSS-SEEEEEC
T ss_pred HHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHH-HHHHhCC-CeEEEEE
Confidence 3333333333445555677763 1 233333333 4444443 2444443
No 146
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=21.32 E-value=2.3e+02 Score=20.87 Aligned_cols=104 Identities=13% Similarity=-0.025 Sum_probs=53.2
Q ss_pred CCcceEEEEeCCCCchh------hHHHH----HHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHh
Q 032168 17 QGKTYVVLVATGSFNPP------TFMHL----RMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLAC 86 (146)
Q Consensus 17 ~~k~~i~llfGGSFnP~------H~GHl----~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~~~~~~~~R~~Ml~lai 86 (146)
+...+++++ +...+.. ..-+. .+++++.+..+..++.++.+ + .......+|.+=.+.++
T Consensus 81 ~~~iPvV~~-~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g---~-------~~~~~~~~R~~Gf~~~l 149 (313)
T 3m9w_A 81 QEGIKVLAY-DRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGG---S-------PVDNNAKLFRAGQMKVL 149 (313)
T ss_dssp TTTCEEEEE-SSCCTTSCCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEES---C-------TTCHHHHHHHHHHHHHH
T ss_pred HCCCeEEEE-CCcCCCCCceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEEC---C-------CCCccHHHHHHHHHHHH
Confidence 345677774 6544321 11233 33444443445456666533 1 12245678888888888
Q ss_pred cCC---CCeEEecccc-cCCCccchHHHHHHHHHHc-CCCCeeeeeccch
Q 032168 87 KSS---DFIMVDPWEA-NQSGYQRTLTVLSRVKNFL-IEAGLISTGMDHM 131 (146)
Q Consensus 87 ~~~---~~i~v~~~E~-~~~~~~yT~~tl~~l~~~~-p~~~~~liG~D~l 131 (146)
+.. +.+.+..-.. ........++.++.+-+.+ |+..-+++..|..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~ 199 (313)
T 3m9w_A 150 KPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDAT 199 (313)
T ss_dssp HHHHHTTSEEEEEEEECGGGCHHHHHHHHHHHHHHTTTCCCEEEESSHHH
T ss_pred HhhccCCCEEEEeeccCCCcCHHHHHHHHHHHHHhCCCCeeEEEECCCch
Confidence 765 5665532111 1112234556677777777 6655444555543
No 147
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=21.29 E-value=94 Score=22.11 Aligned_cols=40 Identities=28% Similarity=0.506 Sum_probs=26.2
Q ss_pred CCcceEEEEeCCCCchhhHH-HHHHHHHHHHhhCCCcEE-EE
Q 032168 17 QGKTYVVLVATGSFNPPTFM-HLRMFELARDTLNSEGYC-VI 56 (146)
Q Consensus 17 ~~k~~i~llfGGSFnP~H~G-Hl~l~~~a~~~~~~d~v~-vv 56 (146)
++|.-++++|-|+|.|+=.. |+.-++...+.++..++. |+
T Consensus 55 ~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv 96 (184)
T 3uma_A 55 KGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIA 96 (184)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEE
T ss_pred CCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 44434455568999999777 877777776666434444 44
No 148
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=21.08 E-value=83 Score=23.86 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=20.5
Q ss_pred ccchHHHHHHHHHHcCCCCe-eeeecc
Q 032168 104 YQRTLTVLSRVKNFLIEAGL-ISTGMD 129 (146)
Q Consensus 104 ~~yT~~tl~~l~~~~p~~~~-~liG~D 129 (146)
...+.-.++.|++.||++++ ++++..
T Consensus 14 ~i~~~p~l~~Lk~~~P~a~I~~l~~~~ 40 (326)
T 2gt1_A 14 VLHTLPALTDAQQAIPGIKFDWVVEEG 40 (326)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEEEGG
T ss_pred HHhHHHHHHHHHHhCCCCEEEEEEehh
Confidence 34677889999999999999 766543
No 149
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=20.95 E-value=3.3e+02 Score=21.95 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=56.4
Q ss_pred CChhhhhcccccCCc-ceEEEEeCCCCchh--hHHHHHHHHHHHHhhCCCcEEEEecccCCCCccccc-CCCCCHHHHHH
Q 032168 5 LPLEKLSLESKTQGK-TYVVLVATGSFNPP--TFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK-RGLISAEHRIN 80 (146)
Q Consensus 5 ~~~~~~~~~~~~~~k-~~i~llfGGSFnP~--H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k-~~~~~~~~R~~ 80 (146)
||-+.+..+++..-+ +-+.++ ..+.+|+ |..-+.++..|++....++|.+|--|+....+.-++ ...++...=.+
T Consensus 64 F~dGE~~v~i~esvrg~dV~ii-qs~~~~~nd~lmeLl~~idA~k~asA~rit~ViPY~~YaRQdr~~~r~~i~ak~vA~ 142 (379)
T 2ji4_A 64 EPNRETRVQIQESVRGKDVFII-QTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLAS 142 (379)
T ss_dssp CTTSCEEEEECSCCTTCEEEEE-CCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEECSSCSSCCC-------CCHHHHHHH
T ss_pred CCCCCEEEEeCCCcCCCEEEEE-eCCCCCccHHHHHHHHHHHHHHhcCCceEEEEEeccCccccccccCCCcHHHHHHHH
Confidence 333334444432222 344443 6555665 556666677788877778886554455544422111 12344443344
Q ss_pred HHHHHhcCCCCeEEecccccCCC-------c---cc-hHHHHHHHHHHcCCCCe-eeeecc
Q 032168 81 LCNLACKSSDFIMVDPWEANQSG-------Y---QR-TLTVLSRVKNFLIEAGL-ISTGMD 129 (146)
Q Consensus 81 Ml~lai~~~~~i~v~~~E~~~~~-------~---~y-T~~tl~~l~~~~p~~~~-~liG~D 129 (146)
|+..+= -.+ |-+++...+. | .+ .-...+++++.+++.+- .|+|-|
T Consensus 143 lL~~aG--ad~--vit~DlHs~q~qgfF~ipvD~l~A~p~La~~I~~~~~~~~~~vVV~pd 199 (379)
T 2ji4_A 143 MMCKAG--LTH--LITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKS 199 (379)
T ss_dssp HHHHTT--CCE--EEEESCSSGGGGGGSSSCEEEECCHHHHHHHHHHHSTTGGGEEEEESS
T ss_pred HHHHcC--CCE--EEEecCCChhhccccCCceeeeccHHHHHHHHHHhcccCCCcEEEEEc
Confidence 444321 122 1222221111 0 11 33456788887766544 677666
No 150
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Probab=20.50 E-value=3.1e+02 Score=21.44 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=46.4
Q ss_pred CChhhhhcccccCCc-ceEEEEeCCCCchh--hHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccC--CCCCHHHHH
Q 032168 5 LPLEKLSLESKTQGK-TYVVLVATGSFNPP--TFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRI 79 (146)
Q Consensus 5 ~~~~~~~~~~~~~~k-~~i~llfGGSFnP~--H~GHl~l~~~a~~~~~~d~v~vvp~~~~p~~~~~~k~--~~~~~~~R~ 79 (146)
||-+.+..+++..-+ +-+.+ ...+.+|+ |..-+.++-.|+.....+++..+--|+.+..+.++.+ ..++...=.
T Consensus 41 F~dGE~~v~i~e~vrg~dv~i-iqs~~~~~nd~lmell~~~~a~~~~~a~~i~av~pY~~yaRqd~K~~~r~~i~a~~~a 119 (317)
T 1dku_A 41 FSDGEVQINIEESIRGCDCYI-IQSTSDPVNEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFA 119 (317)
T ss_dssp CTTSCEEEEECSCCTTCEEEE-ECCCCSSHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTTTTCCSCSSTTCCCHHHHHH
T ss_pred CCCCCEEEEecCCCCCCEEEE-EcCCCCCCcHHHHHHHHHHHHhhccCcceEEEEEEcchHhhhhhhhcCCCchHHHHHH
Confidence 444445555542222 34445 46666676 5555666666677667788887766777777654433 234455555
Q ss_pred HHHHHH
Q 032168 80 NLCNLA 85 (146)
Q Consensus 80 ~Ml~la 85 (146)
+|+..+
T Consensus 120 ~ll~~~ 125 (317)
T 1dku_A 120 NLLETA 125 (317)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666554
No 151
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=20.49 E-value=99 Score=22.66 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=28.4
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
+.+++.|..|..|+.. .+.-++.+.+.++-+++.|+.
T Consensus 57 Kvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlg 93 (215)
T 2i3y_A 57 KHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLG 93 (215)
T ss_dssp SEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEE
T ss_pred CEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEE
Confidence 4778889999999998 777777777776545677664
No 152
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=20.44 E-value=1.8e+02 Score=18.69 Aligned_cols=39 Identities=8% Similarity=0.140 Sum_probs=27.3
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
.+.+++.|.++.+|+-...+..++.+.+...-.++.|+.
T Consensus 30 gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~ 68 (152)
T 2lja_A 30 GKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVS 68 (152)
T ss_dssp TSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEE
T ss_pred CCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEE
Confidence 356777789999999766666666766666534566653
No 153
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=20.24 E-value=1.3e+02 Score=22.29 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=24.8
Q ss_pred CcceEEEEe-CCCCchhhHHHHHHHHHHHHhhCCCcEEEEe
Q 032168 18 GKTYVVLVA-TGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (146)
Q Consensus 18 ~k~~i~llf-GGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp 57 (146)
++..++++| +++|.|+=.-.+.-+..+.+.++..++.|+.
T Consensus 28 Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vig 68 (233)
T 2v2g_A 28 GNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIA 68 (233)
T ss_dssp CSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEE
T ss_pred CCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEE
Confidence 444566655 6999998555555555555555434576664
No 154
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=20.23 E-value=1.6e+02 Score=18.15 Aligned_cols=50 Identities=6% Similarity=-0.041 Sum_probs=28.2
Q ss_pred CCChhhhhccccc-CCcceEEEEeCCCCchhhHHHHHHHHHHHHhhCCCcEEEEeccc
Q 032168 4 PLPLEKLSLESKT-QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYM 60 (146)
Q Consensus 4 ~~~~~~~~~~~~~-~~k~~i~llfGGSFnP~H~GHl~l~~~a~~~~~~d~v~vvp~~~ 60 (146)
-+|+..+...++. ++.++|++ +|.|= .. -..+-..+...+. ++.++.|.+
T Consensus 40 ~ip~~~l~~~~~~l~~~~~ivv-yC~~g---~r--s~~a~~~L~~~G~-~v~~l~GG~ 90 (100)
T 3foj_A 40 TIPMNSIPDNLNYFNDNETYYI-ICKAG---GR--SAQVVQYLEQNGV-NAVNVEGGM 90 (100)
T ss_dssp ECCGGGGGGCGGGSCTTSEEEE-ECSSS---HH--HHHHHHHHHTTTC-EEEEETTHH
T ss_pred ECCHHHHHHHHHhCCCCCcEEE-EcCCC---ch--HHHHHHHHHHCCC-CEEEecccH
Confidence 3677778766652 23356666 46553 22 2344445566677 777765543
No 155
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=20.20 E-value=99 Score=24.47 Aligned_cols=43 Identities=16% Similarity=0.102 Sum_probs=21.6
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHHHHhh-CCCcEEEEecccCC
Q 032168 19 KTYVVLVATGSFNPPTFMHLRMFELARDTL-NSEGYCVIGGYMSP 62 (146)
Q Consensus 19 k~~i~llfGGSFnP~H~GHl~l~~~a~~~~-~~d~v~vvp~~~~p 62 (146)
|++|+++|||.= .=|.-=+.-+..+.+.+ ..+++.+++....+
T Consensus 3 k~~v~vl~gG~s-~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~~ 46 (377)
T 1ehi_A 3 KKRVALIFGGNS-SEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQ 46 (377)
T ss_dssp CEEEEEEEECSS-TTHHHHHHHHHHHHHHHHHHSSEEEEEEEECT
T ss_pred CcEEEEEeCCCC-CCcceeHHHHHHHHHHhCcccCcEEEEEEEcC
Confidence 678999988822 22322222233333333 33456666554444
No 156
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=20.06 E-value=1.8e+02 Score=18.64 Aligned_cols=43 Identities=21% Similarity=0.148 Sum_probs=29.6
Q ss_pred hcCCCCeEEecccccCCCccchHHHHHHHHHHcCCCCe-eeeeccch
Q 032168 86 CKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGL-ISTGMDHM 131 (146)
Q Consensus 86 i~~~~~i~v~~~E~~~~~~~yT~~tl~~l~~~~p~~~~-~liG~D~l 131 (146)
-+..+.+-+.++.... .-.++.++.+++.+|+..+ ++.+.+..
T Consensus 63 ~~~~~dlii~D~~l~~---~~g~~~~~~l~~~~~~~~ii~ls~~~~~ 106 (150)
T 4e7p_A 63 EKESVDIAILDVEMPV---KTGLEVLEWIRSEKLETKVVVVTTFKRA 106 (150)
T ss_dssp TTSCCSEEEECSSCSS---SCHHHHHHHHHHTTCSCEEEEEESCCCH
T ss_pred hccCCCEEEEeCCCCC---CcHHHHHHHHHHhCCCCeEEEEeCCCCH
Confidence 3455777777765432 3468999999999988887 55555543
No 157
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=20.06 E-value=1.3e+02 Score=22.85 Aligned_cols=28 Identities=11% Similarity=-0.055 Sum_probs=20.5
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHHHHh
Q 032168 20 TYVVLVATGSFNPPTFMHLRMFELARDT 47 (146)
Q Consensus 20 ~~i~llfGGSFnP~H~GHl~l~~~a~~~ 47 (146)
.+++++++|++.|...|+..+++.+...
T Consensus 205 ~~~vl~~~gr~~~~~kg~~~li~a~~~l 232 (384)
T 1vgv_A 205 KKMILVTGHRRESFGRGFEEICHALADI 232 (384)
T ss_dssp SEEEEEECCCBSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCccccchHHHHHHHHHHHH
Confidence 4556668999988778988877766543
Done!