Query 032169
Match_columns 146
No_of_seqs 136 out of 1580
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 10:31:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 2.5E-23 5.3E-28 140.5 13.3 118 1-145 14-136 (160)
2 KOG0027 Calmodulin and related 99.9 1.1E-21 2.4E-26 133.2 12.5 123 1-146 2-130 (151)
3 KOG0030 Myosin essential light 99.9 2.3E-20 5E-25 121.5 11.7 118 2-144 6-131 (152)
4 KOG0031 Myosin regulatory ligh 99.8 3.2E-19 7E-24 118.0 13.0 117 2-145 27-145 (171)
5 KOG0028 Ca2+-binding protein ( 99.8 9.5E-19 2.1E-23 116.5 12.4 117 2-145 28-150 (172)
6 PTZ00183 centrin; Provisional 99.8 6.9E-18 1.5E-22 114.6 13.4 118 1-145 11-134 (158)
7 PTZ00184 calmodulin; Provision 99.8 1.1E-17 2.4E-22 112.3 13.8 118 1-145 5-128 (149)
8 KOG0037 Ca2+-binding protein, 99.6 4.8E-14 1E-18 98.7 11.8 107 5-145 55-168 (221)
9 KOG0034 Ca2+/calmodulin-depend 99.5 1.6E-13 3.4E-18 95.7 11.3 118 2-145 28-151 (187)
10 PLN02964 phosphatidylserine de 99.5 1.7E-13 3.7E-18 110.5 11.6 111 2-144 138-272 (644)
11 KOG0036 Predicted mitochondria 99.4 3.4E-12 7.4E-17 96.7 12.5 110 4-146 11-127 (463)
12 KOG0044 Ca2+ sensor (EF-Hand s 99.4 5.4E-12 1.2E-16 88.2 10.9 101 2-128 21-129 (193)
13 KOG0037 Ca2+-binding protein, 99.3 1.5E-11 3.4E-16 86.2 9.3 87 6-124 123-217 (221)
14 PF13499 EF-hand_7: EF-hand do 99.3 2.9E-11 6.4E-16 70.6 7.2 66 8-125 1-66 (66)
15 KOG0044 Ca2+ sensor (EF-Hand s 99.2 1.5E-10 3.2E-15 81.0 10.0 105 8-127 65-175 (193)
16 KOG0027 Calmodulin and related 99.2 4.7E-10 1E-14 76.1 9.7 98 4-127 41-149 (151)
17 cd05022 S-100A13 S-100A13: S-1 99.1 2.9E-10 6.4E-15 70.3 7.1 64 5-68 6-78 (89)
18 PTZ00183 centrin; Provisional 99.1 1E-09 2.2E-14 74.3 10.4 97 5-127 51-154 (158)
19 cd05027 S-100B S-100B: S-100B 99.1 6.1E-10 1.3E-14 68.8 8.0 63 5-67 6-81 (88)
20 smart00027 EH Eps15 homology d 99.1 8.7E-10 1.9E-14 69.2 8.5 67 1-69 4-76 (96)
21 PTZ00184 calmodulin; Provision 99.0 5.1E-09 1.1E-13 70.0 9.8 95 6-126 46-147 (149)
22 KOG0377 Protein serine/threoni 99.0 4E-09 8.7E-14 81.1 10.0 125 6-146 463-596 (631)
23 COG5126 FRQ1 Ca2+-binding prot 99.0 1.1E-08 2.4E-13 69.5 10.4 97 4-127 53-156 (160)
24 cd00213 S-100 S-100: S-100 dom 99.0 5.2E-09 1.1E-13 64.6 7.5 66 3-68 4-82 (88)
25 cd05031 S-100A10_like S-100A10 99.0 5.4E-09 1.2E-13 65.4 7.6 61 5-65 6-79 (94)
26 cd05025 S-100A1 S-100A1: S-100 99.0 6.7E-09 1.4E-13 64.7 7.9 64 5-68 7-83 (92)
27 cd05026 S-100Z S-100Z: S-100Z 98.9 1.4E-08 2.9E-13 63.5 8.0 64 5-68 8-84 (93)
28 KOG0038 Ca2+-binding kinase in 98.9 3.3E-08 7.2E-13 65.6 10.1 97 23-146 55-154 (189)
29 cd05029 S-100A6 S-100A6: S-100 98.9 2.1E-08 4.6E-13 61.9 7.9 64 5-68 8-82 (88)
30 cd00052 EH Eps15 homology doma 98.8 2.1E-08 4.5E-13 58.3 6.9 55 10-66 2-62 (67)
31 KOG0034 Ca2+/calmodulin-depend 98.8 1.2E-07 2.6E-12 66.3 10.3 100 10-128 69-176 (187)
32 cd00051 EFh EF-hand, calcium b 98.8 4.1E-08 8.9E-13 55.4 6.5 55 9-63 2-62 (63)
33 PF00036 EF-hand_1: EF hand; 98.7 2.4E-08 5.3E-13 48.8 3.4 28 101-128 2-29 (29)
34 PF00036 EF-hand_1: EF hand; 98.7 2.9E-08 6.4E-13 48.5 3.6 29 8-36 1-29 (29)
35 cd05023 S-100A11 S-100A11: S-1 98.7 2.4E-07 5.1E-12 57.4 8.2 63 5-67 7-82 (89)
36 KOG4223 Reticulocalbin, calume 98.7 4.8E-08 1E-12 72.4 5.4 116 6-144 162-284 (325)
37 KOG1707 Predicted Ras related/ 98.7 3.5E-07 7.5E-12 72.8 10.5 129 1-129 189-345 (625)
38 PF13833 EF-hand_8: EF-hand do 98.7 1.1E-07 2.3E-12 53.2 5.7 46 20-65 1-53 (54)
39 KOG0028 Ca2+-binding protein ( 98.6 6.8E-07 1.5E-11 60.2 9.4 96 6-127 68-170 (172)
40 PF14658 EF-hand_9: EF-hand do 98.6 1.6E-07 3.6E-12 54.3 5.6 55 11-65 2-64 (66)
41 KOG0040 Ca2+-binding actin-bun 98.6 4.1E-07 8.9E-12 78.4 9.8 98 2-124 2248-2358(2399)
42 PF13405 EF-hand_6: EF-hand do 98.6 1E-07 2.2E-12 47.3 3.4 29 101-129 2-31 (31)
43 PF13405 EF-hand_6: EF-hand do 98.5 1.5E-07 3.3E-12 46.6 3.6 30 8-37 1-31 (31)
44 KOG0041 Predicted Ca2+-binding 98.5 3.6E-07 7.8E-12 63.7 6.5 102 2-127 94-203 (244)
45 cd00252 SPARC_EC SPARC_EC; ext 98.4 1.2E-06 2.6E-11 56.8 7.2 57 4-64 45-107 (116)
46 KOG2562 Protein phosphatase 2 98.4 1.3E-06 2.8E-11 67.7 7.8 93 6-127 277-379 (493)
47 cd05030 calgranulins Calgranul 98.4 2.1E-06 4.6E-11 53.0 7.2 65 5-69 6-83 (88)
48 PF13499 EF-hand_7: EF-hand do 98.4 4.4E-07 9.6E-12 52.7 3.8 42 101-144 2-43 (66)
49 cd05022 S-100A13 S-100A13: S-1 98.4 6.9E-07 1.5E-11 55.3 4.5 48 96-145 5-55 (89)
50 KOG0031 Myosin regulatory ligh 98.3 3.1E-06 6.8E-11 56.7 7.3 60 6-65 100-165 (171)
51 KOG0030 Myosin essential light 98.3 2.5E-06 5.5E-11 56.2 6.5 60 5-64 86-150 (152)
52 cd05027 S-100B S-100B: S-100B 98.3 2.1E-06 4.5E-11 53.0 5.1 48 96-145 5-59 (88)
53 PF13202 EF-hand_5: EF hand; P 98.3 1.2E-06 2.7E-11 41.2 2.8 25 101-125 1-25 (25)
54 KOG0751 Mitochondrial aspartat 98.2 6.3E-06 1.4E-10 64.6 8.2 105 7-143 108-221 (694)
55 PF13833 EF-hand_8: EF-hand do 98.2 3.4E-06 7.3E-11 47.0 4.6 53 50-127 1-53 (54)
56 PF13202 EF-hand_5: EF hand; P 98.1 3.3E-06 7.2E-11 39.7 3.1 25 9-33 1-25 (25)
57 KOG0036 Predicted mitochondria 98.1 1.7E-05 3.7E-10 60.9 8.4 91 6-127 50-146 (463)
58 KOG2643 Ca2+ binding protein, 98.1 8.3E-06 1.8E-10 63.0 6.2 92 7-128 233-347 (489)
59 KOG0038 Ca2+-binding kinase in 98.1 7.6E-05 1.7E-09 49.8 9.4 97 11-129 75-179 (189)
60 KOG4223 Reticulocalbin, calume 98.0 1.4E-05 3.1E-10 59.5 5.2 61 5-65 75-141 (325)
61 cd05025 S-100A1 S-100A1: S-100 98.0 1.9E-05 4.2E-10 49.0 5.0 50 96-145 6-60 (92)
62 KOG0377 Protein serine/threoni 98.0 3.3E-05 7E-10 60.0 6.9 60 6-65 546-615 (631)
63 cd05031 S-100A10_like S-100A10 98.0 1.9E-05 4E-10 49.3 4.7 48 96-145 5-59 (94)
64 smart00027 EH Eps15 homology d 97.9 2.6E-05 5.6E-10 48.8 5.2 46 96-145 7-52 (96)
65 cd05029 S-100A6 S-100A6: S-100 97.9 3E-05 6.4E-10 47.9 5.0 48 96-145 7-59 (88)
66 PLN02964 phosphatidylserine de 97.9 6.2E-05 1.3E-09 61.7 8.0 59 7-65 179-243 (644)
67 cd00051 EFh EF-hand, calcium b 97.9 4E-05 8.6E-10 42.8 5.1 50 50-125 13-62 (63)
68 cd05024 S-100A10 S-100A10: A s 97.9 0.00021 4.6E-09 44.2 8.2 62 5-67 6-78 (91)
69 KOG2643 Ca2+ binding protein, 97.8 0.0001 2.3E-09 57.1 8.0 124 4-127 315-453 (489)
70 cd00213 S-100 S-100: S-100 dom 97.8 3.7E-05 7.9E-10 47.2 4.1 50 96-145 5-59 (88)
71 PF12763 EF-hand_4: Cytoskelet 97.8 0.00012 2.7E-09 46.5 6.6 63 1-66 4-72 (104)
72 cd00052 EH Eps15 homology doma 97.8 3.1E-05 6.7E-10 44.7 3.5 39 102-144 2-40 (67)
73 KOG0751 Mitochondrial aspartat 97.8 0.00025 5.4E-09 56.0 8.9 97 5-129 31-138 (694)
74 cd05026 S-100Z S-100Z: S-100Z 97.5 0.00037 7.9E-09 43.4 5.8 59 50-129 24-83 (93)
75 PF14658 EF-hand_9: EF-hand do 97.5 0.00019 4E-09 41.7 4.0 42 103-145 2-43 (66)
76 cd00252 SPARC_EC SPARC_EC; ext 97.5 0.00037 8.1E-09 45.2 5.7 53 43-125 48-106 (116)
77 cd05030 calgranulins Calgranul 97.5 0.00044 9.6E-09 42.5 5.7 57 51-128 24-80 (88)
78 smart00054 EFh EF-hand, calciu 97.4 0.00021 4.5E-09 33.3 3.1 28 8-35 1-28 (29)
79 KOG0169 Phosphoinositide-speci 97.4 0.002 4.4E-08 53.2 9.4 110 6-145 135-250 (746)
80 KOG0046 Ca2+-binding actin-bun 97.3 0.0011 2.3E-08 52.8 7.4 67 1-68 13-88 (627)
81 smart00054 EFh EF-hand, calciu 97.3 0.0004 8.7E-09 32.3 3.0 27 101-127 2-28 (29)
82 cd05023 S-100A11 S-100A11: S-1 97.2 0.001 2.2E-08 41.1 5.2 55 53-128 27-81 (89)
83 PRK12309 transaldolase/EF-hand 97.2 0.0013 2.7E-08 51.3 6.6 53 6-68 333-388 (391)
84 PF05042 Caleosin: Caleosin re 97.1 0.00066 1.4E-08 46.6 3.7 110 6-127 6-124 (174)
85 PF14788 EF-hand_10: EF hand; 97.1 0.0019 4.1E-08 35.4 4.7 33 96-128 18-50 (51)
86 KOG0041 Predicted Ca2+-binding 96.9 0.0017 3.7E-08 45.7 4.4 48 96-145 96-143 (244)
87 KOG4666 Predicted phosphate ac 96.9 0.0033 7.1E-08 47.4 5.7 96 7-129 259-361 (412)
88 PF14788 EF-hand_10: EF hand; 96.7 0.0061 1.3E-07 33.4 4.7 43 23-65 1-49 (51)
89 PRK12309 transaldolase/EF-hand 96.6 0.008 1.7E-07 46.9 6.3 24 98-121 333-356 (391)
90 cd05024 S-100A10 S-100A10: A s 96.4 0.013 2.8E-07 36.3 5.4 59 50-129 20-78 (91)
91 PF09279 EF-hand_like: Phospho 96.3 0.026 5.6E-07 34.0 6.5 58 8-66 1-70 (83)
92 KOG4251 Calcium binding protei 96.2 0.013 2.8E-07 42.7 5.2 60 4-63 98-166 (362)
93 PF10591 SPARC_Ca_bdg: Secrete 96.1 0.0031 6.8E-08 40.7 1.6 56 5-62 52-113 (113)
94 PF12763 EF-hand_4: Cytoskelet 96.1 0.01 2.2E-07 37.8 3.7 34 3-36 39-72 (104)
95 KOG0035 Ca2+-binding actin-bun 96.0 0.042 9.1E-07 46.7 7.8 94 4-123 744-848 (890)
96 KOG4065 Uncharacterized conser 95.9 0.027 5.8E-07 36.3 5.2 52 11-62 71-142 (144)
97 KOG4251 Calcium binding protei 94.8 0.11 2.4E-06 38.0 5.8 25 10-34 143-167 (362)
98 KOG0040 Ca2+-binding actin-bun 94.7 0.17 3.7E-06 45.5 7.5 73 50-142 2266-2339(2399)
99 KOG1707 Predicted Ras related/ 94.5 0.15 3.2E-06 41.6 6.5 63 2-64 310-376 (625)
100 KOG0042 Glycerol-3-phosphate d 94.5 0.12 2.7E-06 42.0 5.8 69 1-69 587-661 (680)
101 PF09279 EF-hand_like: Phospho 94.4 0.15 3.3E-06 30.6 5.1 44 101-145 2-45 (83)
102 KOG2562 Protein phosphatase 2 94.4 0.38 8.2E-06 38.2 8.2 99 8-123 312-420 (493)
103 KOG4065 Uncharacterized conser 94.2 0.55 1.2E-05 30.4 7.2 71 39-124 62-142 (144)
104 KOG3555 Ca2+-binding proteogly 93.3 0.16 3.5E-06 38.8 4.3 94 7-130 211-313 (434)
105 PF05517 p25-alpha: p25-alpha 93.0 0.53 1.1E-05 32.0 6.2 61 9-69 1-73 (154)
106 KOG1955 Ral-GTPase effector RA 92.7 0.34 7.3E-06 38.9 5.5 64 1-66 225-294 (737)
107 KOG4666 Predicted phosphate ac 92.6 0.11 2.4E-06 39.4 2.6 56 50-130 272-328 (412)
108 PF08726 EFhand_Ca_insen: Ca2+ 92.3 0.13 2.7E-06 30.2 2.2 29 96-125 3-31 (69)
109 KOG1955 Ral-GTPase effector RA 91.0 0.32 6.9E-06 39.1 3.7 33 4-36 262-294 (737)
110 PLN02952 phosphoinositide phos 90.7 0.91 2E-05 37.6 6.2 70 50-144 13-82 (599)
111 KOG1029 Endocytic adaptor prot 90.3 0.88 1.9E-05 38.6 5.8 58 4-63 192-255 (1118)
112 KOG2871 Uncharacterized conser 87.3 1 2.2E-05 34.9 4.0 37 96-132 306-342 (449)
113 PF14513 DAG_kinase_N: Diacylg 87.0 1.4 3E-05 29.5 4.1 65 21-112 5-82 (138)
114 KOG2243 Ca2+ release channel ( 86.5 1.4 3E-05 40.1 4.8 51 12-63 4062-4118(5019)
115 PF08414 NADPH_Ox: Respiratory 85.8 3.2 7E-05 26.0 5.0 56 7-67 30-94 (100)
116 PF09068 EF-hand_2: EF hand; 85.4 4.5 9.8E-05 26.6 5.9 70 51-128 57-126 (127)
117 PF05042 Caleosin: Caleosin re 85.2 0.87 1.9E-05 31.5 2.5 37 96-132 4-40 (174)
118 KOG1265 Phospholipase C [Lipid 84.7 6.7 0.00015 34.1 7.8 48 96-145 218-275 (1189)
119 PRK09430 djlA Dna-J like membr 83.5 8.2 0.00018 28.7 7.2 99 19-144 67-173 (267)
120 KOG4347 GTPase-activating prot 83.0 2.4 5.3E-05 35.2 4.5 45 50-121 568-612 (671)
121 KOG0046 Ca2+-binding actin-bun 81.0 4 8.6E-05 33.3 4.9 49 96-145 16-65 (627)
122 KOG3555 Ca2+-binding proteogly 80.9 3.5 7.5E-05 31.8 4.4 57 5-65 248-310 (434)
123 KOG4347 GTPase-activating prot 80.2 2.9 6.3E-05 34.7 4.1 34 96-129 552-585 (671)
124 PF11116 DUF2624: Protein of u 79.3 3 6.6E-05 25.4 3.0 29 114-144 13-41 (85)
125 PF08726 EFhand_Ca_insen: Ca2+ 79.1 2.9 6.3E-05 24.5 2.8 28 6-34 5-32 (69)
126 PF10591 SPARC_Ca_bdg: Secrete 78.9 2 4.3E-05 27.6 2.3 26 98-123 87-112 (113)
127 cd07313 terB_like_2 tellurium 78.8 13 0.00028 23.0 7.1 79 20-125 12-98 (104)
128 KOG3866 DNA-binding protein of 78.0 14 0.0003 28.3 6.7 24 103-126 300-323 (442)
129 KOG3449 60S acidic ribosomal p 77.9 4.7 0.0001 25.8 3.7 42 102-145 4-45 (112)
130 PF00404 Dockerin_1: Dockerin 77.6 4 8.6E-05 18.0 2.4 18 17-34 1-18 (21)
131 cd08315 Death_TRAILR_DR4_DR5 D 77.4 15 0.00032 22.9 7.9 88 6-143 3-90 (96)
132 KOG4578 Uncharacterized conser 77.3 2.1 4.6E-05 32.8 2.3 56 10-65 336-398 (421)
133 PLN02952 phosphoinositide phos 76.8 21 0.00046 29.8 8.1 48 20-67 13-67 (599)
134 COG4103 Uncharacterized protei 76.5 20 0.00044 24.1 6.7 88 11-127 34-129 (148)
135 KOG2871 Uncharacterized conser 75.1 4.9 0.00011 31.3 3.8 43 6-48 308-350 (449)
136 PF09069 EF-hand_3: EF-hand; 74.7 17 0.00037 22.4 7.2 58 7-65 3-75 (90)
137 KOG3449 60S acidic ribosomal p 73.7 21 0.00045 22.9 6.2 54 9-63 3-58 (112)
138 PF04558 tRNA_synt_1c_R1: Glut 73.6 12 0.00025 25.8 5.1 46 96-144 82-127 (164)
139 PF09069 EF-hand_3: EF-hand; 69.7 7.6 0.00016 24.0 3.1 28 99-127 3-30 (90)
140 PF03672 UPF0154: Uncharacteri 69.6 7.7 0.00017 22.3 2.9 32 113-146 29-60 (64)
141 KOG2301 Voltage-gated Ca2+ cha 68.8 4.4 9.6E-05 37.4 2.7 65 1-65 1411-1484(1592)
142 PF12174 RST: RCD1-SRO-TAF4 (R 68.6 16 0.00035 21.4 4.2 32 100-131 26-58 (70)
143 PTZ00373 60S Acidic ribosomal 67.1 12 0.00025 24.1 3.7 41 102-144 6-46 (112)
144 TIGR02675 tape_meas_nterm tape 67.1 7.5 0.00016 22.9 2.7 41 19-59 26-75 (75)
145 KOG0998 Synaptic vesicle prote 66.5 3.2 6.9E-05 35.9 1.4 62 1-64 277-344 (847)
146 PF02761 Cbl_N2: CBL proto-onc 65.4 29 0.00062 21.2 5.3 65 40-130 4-73 (85)
147 PF01885 PTS_2-RNA: RNA 2'-pho 64.2 12 0.00026 26.3 3.6 36 108-145 25-60 (186)
148 PF07879 PHB_acc_N: PHB/PHA ac 63.6 14 0.00031 21.2 3.2 22 106-127 10-31 (64)
149 PRK00523 hypothetical protein; 63.3 12 0.00026 22.0 2.9 42 102-146 27-68 (72)
150 PF07308 DUF1456: Protein of u 63.2 12 0.00027 21.7 3.0 25 99-127 17-41 (68)
151 cd05833 Ribosomal_P2 Ribosomal 61.9 17 0.00036 23.3 3.7 41 102-144 4-44 (109)
152 PRK00819 RNA 2'-phosphotransfe 61.5 18 0.00038 25.3 4.1 35 109-145 27-61 (179)
153 COG3763 Uncharacterized protei 59.8 14 0.0003 21.6 2.8 32 113-146 36-67 (71)
154 KOG0169 Phosphoinositide-speci 59.6 1.2E+02 0.0025 26.3 9.0 95 6-127 171-274 (746)
155 PLN02222 phosphoinositide phos 59.4 56 0.0012 27.3 7.1 59 5-65 23-90 (581)
156 KOG4004 Matricellular protein 58.2 3.7 7.9E-05 29.3 0.2 28 98-125 221-248 (259)
157 TIGR00624 tag DNA-3-methyladen 58.0 26 0.00057 24.5 4.4 109 5-130 51-168 (179)
158 KOG2243 Ca2+ release channel ( 57.9 11 0.00023 34.9 2.9 38 103-143 4061-4098(5019)
159 PF05099 TerB: Tellurite resis 57.4 27 0.00059 22.6 4.4 76 20-122 36-119 (140)
160 PLN02230 phosphoinositide phos 56.6 63 0.0014 27.1 7.0 60 5-65 27-102 (598)
161 PF03979 Sigma70_r1_1: Sigma-7 55.0 16 0.00034 21.9 2.6 43 3-49 3-45 (82)
162 KOG1264 Phospholipase C [Lipid 54.9 35 0.00077 29.8 5.3 67 3-69 139-212 (1267)
163 cd08316 Death_FAS_TNFRSF6 Deat 54.9 50 0.0011 20.6 6.5 26 118-145 69-94 (97)
164 KOG1029 Endocytic adaptor prot 54.3 61 0.0013 28.2 6.6 60 2-64 11-76 (1118)
165 KOG1265 Phospholipase C [Lipid 54.1 56 0.0012 28.9 6.4 60 6-65 220-299 (1189)
166 PF11848 DUF3368: Domain of un 54.0 28 0.0006 18.5 3.2 32 112-145 14-46 (48)
167 COG2818 Tag 3-methyladenine DN 53.8 14 0.0003 26.0 2.5 45 5-49 53-97 (188)
168 PF09336 Vps4_C: Vps4 C termin 53.3 17 0.00037 20.6 2.4 27 115-143 29-55 (62)
169 PLN02228 Phosphoinositide phos 52.7 80 0.0017 26.3 7.0 61 4-66 21-93 (567)
170 PRK01844 hypothetical protein; 52.4 21 0.00045 21.1 2.7 41 102-145 26-66 (72)
171 KOG4578 Uncharacterized conser 51.2 25 0.00055 27.2 3.7 32 96-127 367-398 (421)
172 PTZ00373 60S Acidic ribosomal 48.6 71 0.0015 20.6 5.9 55 8-62 4-59 (112)
173 PF01023 S_100: S-100/ICaBP ty 48.5 40 0.00087 17.6 3.6 31 5-35 4-36 (44)
174 PHA03155 hypothetical protein; 48.5 72 0.0016 20.6 5.5 91 24-142 8-104 (115)
175 KOG0042 Glycerol-3-phosphate d 47.7 23 0.00049 29.5 3.1 45 98-144 592-636 (680)
176 PF13551 HTH_29: Winged helix- 47.6 64 0.0014 19.7 5.8 45 3-47 60-106 (112)
177 KOG3866 DNA-binding protein of 47.3 28 0.0006 26.7 3.3 26 102-127 247-272 (442)
178 cd05833 Ribosomal_P2 Ribosomal 47.3 70 0.0015 20.4 4.8 58 9-66 3-61 (109)
179 PF03352 Adenine_glyco: Methyl 46.8 12 0.00026 26.1 1.4 44 6-49 48-91 (179)
180 PLN02228 Phosphoinositide phos 46.3 77 0.0017 26.4 6.0 65 39-127 20-92 (567)
181 PLN00138 large subunit ribosom 44.9 45 0.00097 21.5 3.7 40 103-144 5-44 (113)
182 PF08672 APC2: Anaphase promot 43.9 42 0.00091 18.9 3.1 13 115-127 32-44 (60)
183 KOG4403 Cell surface glycoprot 43.9 78 0.0017 25.5 5.4 60 6-65 67-129 (575)
184 cd04411 Ribosomal_P1_P2_L12p R 43.8 59 0.0013 20.6 4.0 28 116-145 17-44 (105)
185 PF09373 PMBR: Pseudomurein-bi 43.5 27 0.00059 17.0 2.0 17 112-128 1-17 (33)
186 PLN02230 phosphoinositide phos 43.3 43 0.00092 28.1 4.1 48 96-144 26-74 (598)
187 TIGR01267 Phe4hydrox_mono phen 43.1 1.4E+02 0.0029 22.2 6.5 63 2-65 12-88 (248)
188 KOG0998 Synaptic vesicle prote 43.0 83 0.0018 27.6 6.0 60 2-64 124-189 (847)
189 PRK14981 DNA-directed RNA poly 42.8 32 0.00069 22.0 2.8 26 117-144 80-105 (112)
190 PF08730 Rad33: Rad33; InterP 42.6 1.1E+02 0.0025 21.2 9.7 104 2-131 9-167 (170)
191 PRK11913 phhA phenylalanine 4- 41.5 1.5E+02 0.0033 22.3 6.5 63 2-65 28-104 (275)
192 PF03683 UPF0175: Uncharacteri 41.4 61 0.0013 19.0 3.7 28 116-143 46-73 (76)
193 KOG2301 Voltage-gated Ca2+ cha 41.3 25 0.00055 32.8 2.8 37 96-132 1414-1450(1592)
194 PF07128 DUF1380: Protein of u 41.3 34 0.00073 22.9 2.7 14 116-129 43-56 (139)
195 PRK00188 trpD anthranilate pho 40.9 1E+02 0.0023 23.7 5.8 48 22-69 14-65 (339)
196 TIGR01848 PHA_reg_PhaR polyhyd 40.9 40 0.00087 21.5 2.9 22 106-127 10-31 (107)
197 KOG1785 Tyrosine kinase negati 40.6 1.8E+02 0.0038 23.4 6.8 80 21-129 188-276 (563)
198 PF07862 Nif11: Nitrogen fixat 39.7 38 0.00082 17.9 2.4 22 117-140 28-49 (49)
199 PHA02943 hypothetical protein; 39.6 1.2E+02 0.0025 20.9 5.1 41 1-49 5-45 (165)
200 PRK06402 rpl12p 50S ribosomal 38.8 72 0.0016 20.3 3.8 28 115-144 16-43 (106)
201 TIGR01639 P_fal_TIGR01639 Plas 38.6 68 0.0015 18.0 3.4 29 21-49 7-35 (61)
202 PF14277 DUF4364: Domain of un 38.2 1.2E+02 0.0026 20.8 5.2 40 30-69 6-46 (163)
203 PF09682 Holin_LLH: Phage holi 38.1 57 0.0012 20.6 3.4 41 103-145 55-99 (108)
204 COG1460 Uncharacterized protei 37.8 46 0.001 21.5 2.9 27 116-144 80-106 (114)
205 PRK00819 RNA 2'-phosphotransfe 37.7 65 0.0014 22.5 3.8 33 17-49 27-59 (179)
206 PF00046 Homeobox: Homeobox do 37.6 68 0.0015 17.1 5.3 42 1-49 7-48 (57)
207 PLN00138 large subunit ribosom 37.6 1.1E+02 0.0024 19.6 4.7 51 10-61 4-56 (113)
208 cd00086 homeodomain Homeodomai 37.6 67 0.0015 17.0 5.5 41 2-49 8-48 (59)
209 PLN02223 phosphoinositide phos 36.9 2E+02 0.0044 23.9 7.0 60 5-65 14-92 (537)
210 PF01885 PTS_2-RNA: RNA 2'-pho 36.7 54 0.0012 23.0 3.4 33 17-49 26-58 (186)
211 PF02269 TFIID-18kDa: Transcri 36.1 54 0.0012 20.2 2.9 32 96-127 35-66 (93)
212 COG2058 RPP1A Ribosomal protei 36.1 72 0.0016 20.4 3.5 39 104-145 6-44 (109)
213 PF08976 DUF1880: Domain of un 36.0 42 0.00092 21.8 2.5 26 40-65 4-35 (118)
214 PF08044 DUF1707: Domain of un 35.2 69 0.0015 17.5 3.0 30 20-49 20-49 (53)
215 PRK10353 3-methyl-adenine DNA 35.1 33 0.00071 24.2 2.0 44 6-49 53-96 (187)
216 TIGR01245 trpD anthranilate ph 34.6 2.1E+02 0.0046 21.9 6.7 47 23-69 9-59 (330)
217 PF06648 DUF1160: Protein of u 34.5 62 0.0013 21.2 3.1 45 96-145 34-79 (122)
218 COG5502 Uncharacterized conser 34.3 1.4E+02 0.0031 19.9 5.9 55 50-130 72-126 (135)
219 cd00361 arom_aa_hydroxylase Bi 34.0 1.9E+02 0.004 21.1 6.5 63 2-65 6-82 (221)
220 smart00874 B5 tRNA synthetase 33.6 76 0.0016 17.9 3.2 18 115-132 18-35 (71)
221 PF01325 Fe_dep_repress: Iron 33.4 91 0.002 17.3 4.6 49 1-56 2-54 (60)
222 COG5611 Predicted nucleic-acid 33.3 89 0.0019 20.3 3.6 50 96-145 18-67 (130)
223 TIGR03798 ocin_TIGR03798 bacte 33.3 74 0.0016 17.9 3.0 24 116-141 25-48 (64)
224 PF13829 DUF4191: Domain of un 33.1 70 0.0015 23.3 3.5 40 104-145 156-195 (224)
225 PF11116 DUF2624: Protein of u 32.9 1.2E+02 0.0026 18.5 7.2 28 22-49 13-40 (85)
226 cd03348 pro_PheOH Prokaryotic 32.5 2E+02 0.0043 21.0 6.4 63 2-65 12-88 (228)
227 PLN02223 phosphoinositide phos 32.5 79 0.0017 26.2 4.0 49 96-145 13-64 (537)
228 PLN02222 phosphoinositide phos 32.1 1E+02 0.0022 25.9 4.6 48 96-145 22-69 (581)
229 KOG0506 Glutaminase (contains 31.1 1.1E+02 0.0024 25.1 4.5 52 12-63 91-156 (622)
230 PF02209 VHP: Villin headpiece 29.6 76 0.0017 15.9 2.3 11 115-125 1-11 (36)
231 PF06296 DUF1044: Protein of u 29.4 34 0.00074 22.3 1.3 39 106-144 75-113 (120)
232 PF13623 SurA_N_2: SurA N-term 28.9 1.8E+02 0.004 19.4 5.8 71 50-143 45-115 (145)
233 cd07894 Adenylation_RNA_ligase 28.8 87 0.0019 24.3 3.6 45 96-142 207-251 (342)
234 PF13331 DUF4093: Domain of un 28.7 91 0.002 19.0 3.0 26 114-143 61-86 (87)
235 PF02885 Glycos_trans_3N: Glyc 28.5 1.2E+02 0.0025 17.1 4.8 27 37-63 12-41 (66)
236 KOG0506 Glutaminase (contains 28.0 90 0.0019 25.6 3.6 46 99-146 86-131 (622)
237 PF01799 Fer2_2: [2Fe-2S] bind 28.0 1.4E+02 0.0029 17.7 5.0 47 3-49 8-56 (75)
238 COG2818 Tag 3-methyladenine DN 27.8 40 0.00086 23.8 1.5 35 96-130 52-86 (188)
239 PF09494 Slx4: Slx4 endonuclea 27.8 1.1E+02 0.0023 17.3 3.1 17 114-130 43-59 (64)
240 TIGR03333 salvage_mtnX 2-hydro 27.6 2.2E+02 0.0047 19.9 6.2 48 20-68 6-54 (214)
241 PF13592 HTH_33: Winged helix- 27.6 1E+02 0.0022 17.0 2.9 15 116-130 22-36 (60)
242 PLN02859 glutamine-tRNA ligase 27.4 2.7E+02 0.0059 24.4 6.5 46 96-144 84-129 (788)
243 TIGR03685 L21P_arch 50S riboso 26.9 1.5E+02 0.0032 18.8 3.8 28 115-144 16-43 (105)
244 KOG2557 Uncharacterized conser 26.7 2.1E+02 0.0045 22.7 5.2 32 96-127 91-122 (427)
245 smart00153 VHP Villin headpiec 26.7 90 0.0019 15.6 2.3 11 115-125 1-11 (36)
246 PF08328 ASL_C: Adenylosuccina 26.7 1.2E+02 0.0027 19.6 3.4 50 17-66 47-96 (115)
247 PTZ00315 2'-phosphotransferase 26.6 1.1E+02 0.0025 25.6 4.1 36 108-145 398-433 (582)
248 PRK10788 periplasmic folding c 26.4 3.9E+02 0.0084 22.4 7.7 36 30-65 102-144 (623)
249 PF10281 Ish1: Putative stress 26.3 80 0.0017 15.7 2.1 16 117-132 5-20 (38)
250 PF03874 RNA_pol_Rpb4: RNA pol 26.1 44 0.00095 21.2 1.4 9 135-143 102-110 (117)
251 COG1859 KptA RNA:NAD 2'-phosph 26.1 99 0.0021 22.3 3.2 34 109-144 53-86 (211)
252 PF08100 Dimerisation: Dimeris 25.6 24 0.00051 19.2 0.0 38 104-144 11-48 (51)
253 COG5069 SAC6 Ca2+-binding acti 25.6 2E+02 0.0043 23.8 5.0 53 11-63 489-543 (612)
254 TIGR03573 WbuX N-acetyl sugar 25.6 2.5E+02 0.0054 21.6 5.6 26 114-143 317-342 (343)
255 PF10982 DUF2789: Protein of u 25.4 74 0.0016 18.9 2.1 26 118-145 5-30 (74)
256 PF05597 Phasin: Poly(hydroxya 25.2 86 0.0019 20.8 2.6 25 119-146 94-118 (132)
257 PHA02142 putative RNA ligase 25.0 50 0.0011 25.9 1.7 29 103-131 273-301 (366)
258 PF06384 ICAT: Beta-catenin-in 24.8 92 0.002 18.7 2.4 21 120-142 21-41 (78)
259 TIGR01565 homeo_ZF_HD homeobox 24.5 1.4E+02 0.0031 16.7 4.4 34 1-39 8-45 (58)
260 KOG1954 Endocytosis/signaling 24.2 90 0.002 24.9 2.9 29 8-36 478-506 (532)
261 cd05832 Ribosomal_L12p Ribosom 24.1 1.8E+02 0.0038 18.6 3.8 28 115-144 16-43 (106)
262 PF03484 B5: tRNA synthetase B 24.1 1.4E+02 0.003 17.0 3.1 18 115-132 18-35 (70)
263 COG3448 CBS-domain-containing 23.8 87 0.0019 24.1 2.7 43 83-127 190-232 (382)
264 smart00657 RPOL4c DNA-directed 23.2 88 0.0019 20.1 2.4 26 117-144 84-109 (118)
265 PRK06078 pyrimidine-nucleoside 22.8 4.1E+02 0.009 21.5 6.7 48 22-69 14-65 (434)
266 PRK09462 fur ferric uptake reg 22.7 1.4E+02 0.0031 19.7 3.5 40 102-143 20-59 (148)
267 PF08479 POTRA_2: POTRA domain 22.7 29 0.00063 20.1 0.0 32 111-144 9-41 (76)
268 TIGR01837 PHA_granule_1 poly(h 22.5 1.1E+02 0.0023 19.8 2.7 27 116-145 78-104 (118)
269 cd05831 Ribosomal_P1 Ribosomal 22.3 1.5E+02 0.0032 18.7 3.2 29 113-143 15-43 (103)
270 COG3426 Butyrate kinase [Energ 22.0 1.6E+02 0.0035 22.6 3.7 39 16-56 211-251 (358)
271 PF14297 DUF4373: Domain of un 21.9 1.9E+02 0.0041 17.2 3.9 22 99-120 64-85 (87)
272 PF13344 Hydrolase_6: Haloacid 21.6 65 0.0014 19.9 1.5 25 111-137 37-61 (101)
273 PHA02335 hypothetical protein 21.5 2.3E+02 0.0051 18.1 4.3 16 50-65 21-36 (118)
274 KOG4403 Cell surface glycoprot 21.4 50 0.0011 26.5 1.1 32 96-127 65-96 (575)
275 PF15017 AF1Q: Drug resistance 21.3 52 0.0011 20.2 0.9 16 109-124 69-84 (87)
276 PF01316 Arg_repressor: Argini 21.1 1.2E+02 0.0026 17.6 2.5 28 115-144 19-46 (70)
277 COG4359 Uncharacterized conser 21.1 3.2E+02 0.0069 19.6 4.8 47 19-68 9-58 (220)
278 TIGR01209 RNA ligase, Pab1020 21.0 1.4E+02 0.0031 23.5 3.5 28 13-40 163-190 (374)
279 cd03345 eu_TyrOH Eukaryotic ty 21.0 3.9E+02 0.0084 20.5 5.8 63 2-65 61-141 (298)
280 TIGR03830 CxxCG_CxxCG_HTH puta 20.9 2.3E+02 0.005 17.8 4.6 44 4-49 45-88 (127)
281 PF06226 DUF1007: Protein of u 20.6 79 0.0017 22.6 1.9 25 104-128 55-79 (212)
282 PF14513 DAG_kinase_N: Diacylg 20.6 2.7E+02 0.0059 18.6 6.6 32 112-145 45-77 (138)
283 PF06014 DUF910: Bacterial pro 20.5 1.9E+02 0.004 16.6 4.2 42 25-66 3-55 (62)
284 smart00513 SAP Putative DNA-bi 20.3 1.3E+02 0.0027 14.6 3.4 18 115-132 3-20 (35)
285 cd08324 CARD_NOD1_CARD4 Caspas 20.0 2.2E+02 0.0049 17.3 5.1 45 19-66 25-73 (85)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.91 E-value=2.5e-23 Score=140.52 Aligned_cols=118 Identities=27% Similarity=0.452 Sum_probs=109.5
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh---h--CCCccHHHHHHHHHHHhhhcCCCCC
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV---E--KPSLCFDEFLFFCDSIISNNNNNNP 75 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~---~--dg~i~~~ef~~~~~~~~~~~~~~~~ 75 (146)
+|..++++++++|.++|++++|.|+..+|..+++.+|.+++..++..++ . .+.|+|.+|+.++......
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~------ 87 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKR------ 87 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhcc------
Confidence 4678899999999999999999999999999999999999999999999 2 3899999999999887765
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 76 NAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
. ...+.+++||+.||.|++|+|+..+++++++.+|..+ ++++++.|+.-
T Consensus 88 -------------~------~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~--~deev~~ll~~ 136 (160)
T COG5126 88 -------------G------DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERL--SDEEVEKLLKE 136 (160)
T ss_pred -------------C------CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccC--CHHHHHHHHHh
Confidence 2 6689999999999999999999999999999999999 99999999864
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-21 Score=133.17 Aligned_cols=123 Identities=33% Similarity=0.506 Sum_probs=108.0
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCC
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNN 74 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~ 74 (146)
++..++.+++.+|..||.+++|+|+..+|..+++.+|.+++..++..++ ++|.|++.+|+.++..........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~- 80 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDE- 80 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccc-
Confidence 4667889999999999999999999999999999999999999999999 789999999999998765430000
Q ss_pred CCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhhC
Q 032169 75 PNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLRV 146 (146)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~~ 146 (146)
. ...+.++.||+.||.+++|+||.+||+++|..+|.+. +.++++.|++.+
T Consensus 81 --------------~------~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~--~~~e~~~mi~~~ 130 (151)
T KOG0027|consen 81 --------------E------ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKL--TDEECKEMIREV 130 (151)
T ss_pred --------------c------ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC--CHHHHHHHHHhc
Confidence 0 1346899999999999999999999999999999999 999999998753
No 3
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.85 E-value=2.3e-20 Score=121.54 Aligned_cols=118 Identities=28% Similarity=0.421 Sum_probs=106.5
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh----hC----CCccHHHHHHHHHHHhhhcCCC
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV----EK----PSLCFDEFLFFCDSIISNNNNN 73 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~----~d----g~i~~~ef~~~~~~~~~~~~~~ 73 (146)
++.+..+++.+|..||..++|+|+..+...+|+++|.+||.+++.+.+ .+ ..++|++|+.++....+.
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn---- 81 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN---- 81 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc----
Confidence 567889999999999999999999999999999999999999999998 33 679999999999887665
Q ss_pred CCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 74 NPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
+++ ...+++.+.++.||++++|+|...|++++|.++|.++ +++|++.++.
T Consensus 82 ---------------k~q----~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl--~eeEVe~Lla 131 (152)
T KOG0030|consen 82 ---------------KDQ----GTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKL--TEEEVEELLA 131 (152)
T ss_pred ---------------ccc----CcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhc--cHHHHHHHHc
Confidence 111 5678888999999999999999999999999999999 9999999875
No 4
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.83 E-value=3.2e-19 Score=118.04 Aligned_cols=117 Identities=22% Similarity=0.367 Sum_probs=109.5
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh--hCCCccHHHHHHHHHHHhhhcCCCCCCchh
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV--EKPSLCFDEFLFFCDSIISNNNNNNPNAAA 79 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~--~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~ 79 (146)
+.-||++++++|...|+|+||.|..++++..+.++|..++.+++..++ ..|.|+|--|+.++-..+..
T Consensus 27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~g---------- 96 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNG---------- 96 (171)
T ss_pred hHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcC----------
Confidence 446799999999999999999999999999999999999999999999 89999999999999887776
Q ss_pred hhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 80 DASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
. .+.+.+..||+.||.+++|.|..+.++.+|..+|.++ ++++++.|.+.
T Consensus 97 ---------t------dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~--~~eEV~~m~r~ 145 (171)
T KOG0031|consen 97 ---------T------DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRF--TDEEVDEMYRE 145 (171)
T ss_pred ---------C------CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccC--CHHHHHHHHHh
Confidence 3 7788999999999999999999999999999999999 99999998764
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=9.5e-19 Score=116.55 Aligned_cols=117 Identities=21% Similarity=0.320 Sum_probs=106.9
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCC
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNP 75 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~ 75 (146)
+..+.++++.+|..||++++|+|+..||..++.++|+.+..+++..++ +.|.|+|++|...+...+..
T Consensus 28 ~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e------ 101 (172)
T KOG0028|consen 28 TEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGE------ 101 (172)
T ss_pred cHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhc------
Confidence 456778999999999999999999999999999999999999999998 67999999999987765544
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 76 NAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
. .+.+.++.+|+.+|-+++|.|+..+|+.+...+|.++ |++++++||.-
T Consensus 102 -------------~------dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenl--tD~El~eMIeE 150 (172)
T KOG0028|consen 102 -------------R------DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENL--TDEELMEMIEE 150 (172)
T ss_pred -------------c------CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccc--cHHHHHHHHHH
Confidence 2 5778999999999999999999999999999999999 99999999863
No 6
>PTZ00183 centrin; Provisional
Probab=99.78 E-value=6.9e-18 Score=114.60 Aligned_cols=118 Identities=22% Similarity=0.371 Sum_probs=103.6
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCC
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNN 74 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~ 74 (146)
+++.++++++.+|..+|.+++|+|+..||..+++.+|.+++...+..++ ++|.|+|.+|+.++......
T Consensus 11 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~----- 85 (158)
T PTZ00183 11 LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE----- 85 (158)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC-----
Confidence 4667899999999999999999999999999999999888888888888 78999999999987654322
Q ss_pred CCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 75 PNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
. .....++.+|+.+|.+++|.|+.+||..++..+|.++ ++.++..++..
T Consensus 86 --------------~------~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l--~~~~~~~~~~~ 134 (158)
T PTZ00183 86 --------------R------DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETI--TDEELQEMIDE 134 (158)
T ss_pred --------------C------CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC--CHHHHHHHHHH
Confidence 1 3456789999999999999999999999999999888 99999888754
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.78 E-value=1.1e-17 Score=112.34 Aligned_cols=118 Identities=25% Similarity=0.475 Sum_probs=103.3
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCC
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNN 74 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~ 74 (146)
+++.++++++..|..+|.+++|.|+..+|..++..++.+++.+.+..++ ++|.|+|++|+.++......
T Consensus 5 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~----- 79 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD----- 79 (149)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC-----
Confidence 4677889999999999999999999999999999999888888888888 78999999999988764432
Q ss_pred CCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 75 PNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
. .....+..+|+.+|.+++|.|+.++|..++..+|.++ +.++++.++..
T Consensus 80 --------------~------~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~~~~~~~~~~ 128 (149)
T PTZ00184 80 --------------T------DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKL--TDEEVDEMIRE 128 (149)
T ss_pred --------------C------cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCC--CHHHHHHHHHh
Confidence 1 3446789999999999999999999999999999888 89999888764
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.58 E-value=4.8e-14 Score=98.67 Aligned_cols=107 Identities=23% Similarity=0.334 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCc
Q 032169 5 TANDLQRIFEKLDRNGDGLVSLEELNWVLERIG-VHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNA 77 (146)
Q Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~-~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~ 77 (146)
.-..+...|...|.|++|+|+..|+..+|...+ -+.+.+.+..++ .+|+|++.||..++..
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~------------ 122 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY------------ 122 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH------------
Confidence 345789999999999999999999999998653 456777777766 8999999999999854
Q ss_pred hhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 78 AADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
....+.+|+.||+|++|.|+..||+.+|..+|..+ ++.-.+.++++
T Consensus 123 --------------------i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~L--spq~~~~lv~k 168 (221)
T KOG0037|consen 123 --------------------INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRL--SPQFYNLLVRK 168 (221)
T ss_pred --------------------HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCC--CHHHHHHHHHH
Confidence 45679999999999999999999999999999999 98888887765
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.54 E-value=1.6e-13 Score=95.69 Aligned_cols=118 Identities=28% Similarity=0.437 Sum_probs=95.8
Q ss_pred ChhhHHHHHHHHHHhCCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHhh---hCCC-ccHHHHHHHHHHHhhhcCCCCCC
Q 032169 2 APLTANDLQRIFEKLDRN-GDGLVSLEELNWVLERIGVHFTLEELEALV---EKPS-LCFDEFLFFCDSIISNNNNNNPN 76 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d-~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~---~dg~-i~~~ef~~~~~~~~~~~~~~~~~ 76 (146)
|..++..+...|..+|.+ ++|+++.+||..+.. +..++-.+.+-..+ ++|. |+|++|+..+..+...
T Consensus 28 s~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~------- 99 (187)
T KOG0034|consen 28 SANEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-LALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPK------- 99 (187)
T ss_pred CHHHHHHHHHHHHHhccccccCccCHHHHHHHHH-HhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCC-------
Confidence 456788899999999999 999999999999994 66677667777777 5566 9999999999988766
Q ss_pred chhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHc-CCCCCCChhHHHhhhhh
Q 032169 77 AAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARL-GLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~-g~~~~~~~~~~~~l~~~ 145 (146)
. ...+.++-||+.||.+++|+|+.+|+..++..+ |.....+++.++.|+.+
T Consensus 100 ------------~------~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~ 151 (187)
T KOG0034|consen 100 ------------A------SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDK 151 (187)
T ss_pred ------------c------cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 2 444699999999999999999999999999987 54541137777776653
No 10
>PLN02964 phosphatidylserine decarboxylase
Probab=99.52 E-value=1.7e-13 Score=110.47 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=92.6
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHhh------hCCCccHHHHHHHHHHHhhhcC
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIG-VHFTLEE---LEALV------EKPSLCFDEFLFFCDSIISNNN 71 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~-~~~~~~~---~~~l~------~dg~i~~~ef~~~~~~~~~~~~ 71 (146)
+..++++++++|..+|+|++|.+ +..+++.+| ..++.++ +..++ ++|.|+|+||+.++......
T Consensus 138 ~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~-- 211 (644)
T PLN02964 138 VTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNL-- 211 (644)
T ss_pred cHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccC--
Confidence 45578899999999999999997 888999999 5888876 66766 78999999999999864322
Q ss_pred CCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHH-------------cCCCCCCCh-h
Q 032169 72 NNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLAR-------------LGLWDEEKQ-P 137 (146)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~-------------~g~~~~~~~-~ 137 (146)
...+.++.+|+.||+|++|+|+.+||.+++.. +|.++ +. +
T Consensus 212 ------------------------~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l--~~~~ 265 (644)
T PLN02964 212 ------------------------VAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEAL--GVSD 265 (644)
T ss_pred ------------------------CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcc--cchh
Confidence 45678999999999999999999999999998 67666 55 6
Q ss_pred HHHhhhh
Q 032169 138 RLQKHDL 144 (146)
Q Consensus 138 ~~~~l~~ 144 (146)
+++.|++
T Consensus 266 ~~~~iiH 272 (644)
T PLN02964 266 KLNAMIH 272 (644)
T ss_pred hHHHHHH
Confidence 6777663
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.43 E-value=3.4e-12 Score=96.69 Aligned_cols=110 Identities=25% Similarity=0.367 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCC
Q 032169 4 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVH-FTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPN 76 (146)
Q Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~-~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~ 76 (146)
+...+++.+|..||.+++|.++..++...+..+..+ +...-...++ .||.++|.+|...+.
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------------ 78 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD------------ 78 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH------------
Confidence 446789999999999999999999999999999887 4445555555 899999999999875
Q ss_pred chhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhhC
Q 032169 77 AAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLRV 146 (146)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~~ 146 (146)
..+..+..+|+..|.++||.|..+|+.+.|+.+|.++ ++++++.+++++
T Consensus 79 -------------------~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l--~de~~~k~~e~~ 127 (463)
T KOG0036|consen 79 -------------------NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQL--SDEKAAKFFEHM 127 (463)
T ss_pred -------------------HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCcc--CHHHHHHHHHHh
Confidence 4466789999999999999999999999999999998 999999987654
No 12
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.40 E-value=5.4e-12 Score=88.18 Aligned_cols=101 Identities=21% Similarity=0.356 Sum_probs=86.8
Q ss_pred ChhhHHHHHHHHHHhCCCC-CCcccHHHHHHHHHHcCCCCCHHHHHHhh-------hCCCccHHHHHHHHHHHhhhcCCC
Q 032169 2 APLTANDLQRIFEKLDRNG-DGLVSLEELNWVLERIGVHFTLEELEALV-------EKPSLCFDEFLFFCDSIISNNNNN 73 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~-~G~i~~~e~~~~l~~l~~~~~~~~~~~l~-------~dg~i~~~ef~~~~~~~~~~~~~~ 73 (146)
|..+.++++.+|+.|-.+. +|.++..+|+.+++.+....+.+.+...+ ++|.|+|.||+..+......
T Consensus 21 t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG---- 96 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG---- 96 (193)
T ss_pred cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC----
Confidence 3455778888888887766 89999999999999987767776666666 89999999999999887776
Q ss_pred CCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHc
Q 032169 74 NPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARL 128 (146)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~ 128 (146)
...+.++.+|+.||.||+|+|+.+|+..++..+
T Consensus 97 ----------------------t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 97 ----------------------TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred ----------------------cHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 778899999999999999999999999998873
No 13
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.32 E-value=1.5e-11 Score=86.18 Aligned_cols=87 Identities=24% Similarity=0.434 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCchh
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAAA 79 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~ 79 (146)
++.|+.+|+.+|+|++|.|+..||+.+|..+|+.+++.-+..++ ..|.|.|++|+.++..+
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L------------- 189 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL------------- 189 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-------------
Confidence 68899999999999999999999999999999999998888888 48999999999999654
Q ss_pred hhhcccccccCCCCchhHHHHHHHhhhccccCCCcce--eHHHHHHH
Q 032169 80 DASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFI--TSEELQSV 124 (146)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I--s~~el~~~ 124 (146)
..+-++|+.+|++..|.| +.++|..+
T Consensus 190 -------------------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 190 -------------------QRLTEAFRRRDTAQQGSITISYDDFLQM 217 (221)
T ss_pred -------------------HHHHHHHHHhccccceeEEEeHHHHHHH
Confidence 446889999999999975 55666543
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.27 E-value=2.9e-11 Score=70.63 Aligned_cols=66 Identities=35% Similarity=0.606 Sum_probs=55.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhhhCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhccccc
Q 032169 8 DLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADE 87 (146)
Q Consensus 8 ~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (146)
+++.+|..+|.|++|+|+..||..++..++...+..
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~-------------------------------------------- 36 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDE-------------------------------------------- 36 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHH--------------------------------------------
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHH--------------------------------------------
Confidence 478999999999999999999999999988766511
Q ss_pred ccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHH
Q 032169 88 AVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVL 125 (146)
Q Consensus 88 ~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l 125 (146)
.....+..+|+.+|.+++|.|+.+||..++
T Consensus 37 --------~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 37 --------ESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp --------HHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred --------HHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 334456778889999999999999998764
No 15
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.22 E-value=1.5e-10 Score=81.03 Aligned_cols=105 Identities=21% Similarity=0.215 Sum_probs=83.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCchhhh
Q 032169 8 DLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAAADA 81 (146)
Q Consensus 8 ~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~ 81 (146)
-...+|+.||.|++|.|+..||..++..+...-..+.+...| ++|.|+++|++.++..++...+..
T Consensus 65 y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~-------- 136 (193)
T KOG0044|consen 65 YAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSK-------- 136 (193)
T ss_pred HHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccc--------
Confidence 356789999999999999999999998876555566666666 899999999999999888874320
Q ss_pred hcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 82 SQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
....... ...+....+|+.+|.|++|.||.+||...+..
T Consensus 137 -~~~~~~~------~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 137 -ALPEDEE------TPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred -cCCcccc------cHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 0001111 67788899999999999999999999988754
No 16
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.16 E-value=4.7e-10 Score=76.06 Aligned_cols=98 Identities=23% Similarity=0.341 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCC-----HHHHHHhh------hCCCccHHHHHHHHHHHhhhcCC
Q 032169 4 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFT-----LEELEALV------EKPSLCFDEFLFFCDSIISNNNN 72 (146)
Q Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~-----~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~ 72 (146)
++..++..++..+|.+++|.|+..+|..++...+...+ .+++.+.| ++|.|+..|+..++......
T Consensus 41 ~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~--- 117 (151)
T KOG0027|consen 41 PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK--- 117 (151)
T ss_pred CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc---
Confidence 45788999999999999999999999999988755433 34777777 89999999999999886654
Q ss_pred CCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 73 NNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
...+.+...++.+|.|++|.|+..+|..++..
T Consensus 118 -----------------------~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 118 -----------------------LTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred -----------------------CCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 56788899999999999999999999988753
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.13 E-value=2.9e-10 Score=70.34 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhCC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHhh------hCCCccHHHHHHHHHHHhh
Q 032169 5 TANDLQRIFEKLDR-NGDGLVSLEELNWVLER-IGVHFTL-EELEALV------EKPSLCFDEFLFFCDSIIS 68 (146)
Q Consensus 5 ~~~~l~~~F~~~D~-d~~G~i~~~e~~~~l~~-l~~~~~~-~~~~~l~------~dg~i~~~ef~~~~~~~~~ 68 (146)
.+..+..+|+.||. +++|+|+..||+.+|+. +|-.++. +++..++ +||.|+|+||+.++.....
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 47889999999999 99999999999999999 8877777 8899988 8999999999998876543
No 18
>PTZ00183 centrin; Provisional
Probab=99.13 E-value=1e-09 Score=74.31 Aligned_cols=97 Identities=18% Similarity=0.327 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCc
Q 032169 5 TANDLQRIFEKLDRNGDGLVSLEELNWVLERI-GVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNA 77 (146)
Q Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l-~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~ 77 (146)
....+..+|..+|.+++|.|+..+|..++... ........+..+| ++|.|+..+|..++...-..
T Consensus 51 ~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-------- 122 (158)
T PTZ00183 51 KKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGET-------- 122 (158)
T ss_pred CHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC--------
Confidence 34578899999999999999999999987654 3345556777777 78999999999988754222
Q ss_pred hhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 78 AADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
.....+..+|..+|.+++|.|+.++|..++..
T Consensus 123 ------------------l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 123 ------------------ITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred ------------------CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 45677899999999999999999999998865
No 19
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.11 E-value=6.1e-10 Score=68.85 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHh
Q 032169 5 TANDLQRIFEKLD-RNGDG-LVSLEELNWVLER-----IGVHFTLEELEALV------EKPSLCFDEFLFFCDSII 67 (146)
Q Consensus 5 ~~~~l~~~F~~~D-~d~~G-~i~~~e~~~~l~~-----l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~ 67 (146)
.+..++.+|+.|| .+++| .|+..||+.+|+. +|..++++++..++ ++|.|+|++|+.++....
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4788999999998 79999 5999999999999 89899999999999 789999999999887643
No 20
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.10 E-value=8.7e-10 Score=69.24 Aligned_cols=67 Identities=25% Similarity=0.348 Sum_probs=58.9
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhh
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISN 69 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~ 69 (146)
||..++.+++.+|..+|.+++|.|+..++..+++.++ ++.+++..++ ++|.|+|++|+.++......
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~ 76 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRK 76 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999875 5778888888 68999999999988765444
No 21
>PTZ00184 calmodulin; Provisional
Probab=99.01 E-value=5.1e-09 Score=69.97 Aligned_cols=95 Identities=19% Similarity=0.277 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCch
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERI-GVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAA 78 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l-~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~ 78 (146)
...+..+|..+|.+++|.|+..+|..++... ........+..+| ++|.|+..+|..++...-..
T Consensus 46 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~--------- 116 (149)
T PTZ00184 46 EAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEK--------- 116 (149)
T ss_pred HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCC---------
Confidence 4578899999999999999999999998764 2233445566666 78999999999888764211
Q ss_pred hhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHH
Q 032169 79 ADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLA 126 (146)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~ 126 (146)
.....+..+|..+|.+++|.|+.+||..++.
T Consensus 117 -----------------~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 117 -----------------LTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred -----------------CCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 4456788899999999999999999998774
No 22
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.01 E-value=4e-09 Score=81.06 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHhh----hCCCccHHHHHHHHHHHhhhcCCCCCCchhh
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERI-GVHFTLEELEALV----EKPSLCFDEFLFFCDSIISNNNNNNPNAAAD 80 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l-~~~~~~~~~~~l~----~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~ 80 (146)
..++...|+.+|.+++|+|+..++..+++.+ |+++++.-+..-+ .+|.+.|.+.+..+....... +...
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~------ea~~ 536 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILE------EAGS 536 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHH------HHHh
Confidence 4678889999999999999999999999886 7888887666655 789999998877654322110 0000
Q ss_pred hhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcC----CCCCCChhHHHhhhhhC
Q 032169 81 ASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLG----LWDEEKQPRLQKHDLRV 146 (146)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g----~~~~~~~~~~~~l~~~~ 146 (146)
......+ .+...+..+|...|.|++|.||.+||+.+++.++ .++ +++++.++.+++
T Consensus 537 slvetLY--------r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i--~~~~i~~la~~m 596 (631)
T KOG0377|consen 537 SLVETLY--------RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAI--SDDEILELARSM 596 (631)
T ss_pred HHHHHHH--------hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCc--CHHHHHHHHHhh
Confidence 0011111 3346688899999999999999999999998764 455 889988877653
No 23
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.98 E-value=1.1e-08 Score=69.49 Aligned_cols=97 Identities=21% Similarity=0.283 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCC
Q 032169 4 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERI-GVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPN 76 (146)
Q Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l-~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~ 76 (146)
....++.++|..+|. +.|.|+..+|..+|... ....+.+++...| ++|+|+..++..++...-..
T Consensus 53 ~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~------- 124 (160)
T COG5126 53 PSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGER------- 124 (160)
T ss_pred CcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhccc-------
Confidence 345778889999998 89999999999999776 4556678888888 89999999999988854333
Q ss_pred chhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 77 AAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
...+.+..+++.+|.+++|.|+.++|.+++..
T Consensus 125 -------------------~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 125 -------------------LSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred -------------------CCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 67788999999999999999999999988753
No 24
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.96 E-value=5.2e-09 Score=64.57 Aligned_cols=66 Identities=18% Similarity=0.316 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHhCC--CCCCcccHHHHHHHHHH-cCCCC----CHHHHHHhh------hCCCccHHHHHHHHHHHhh
Q 032169 3 PLTANDLQRIFEKLDR--NGDGLVSLEELNWVLER-IGVHF----TLEELEALV------EKPSLCFDEFLFFCDSIIS 68 (146)
Q Consensus 3 ~~~~~~l~~~F~~~D~--d~~G~i~~~e~~~~l~~-l~~~~----~~~~~~~l~------~dg~i~~~ef~~~~~~~~~ 68 (146)
+.+++.++.+|..+|. +++|.|+..+|..+++. +|.++ +..++..++ ++|.|+|++|+.++.....
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 4578899999999999 89999999999999986 55444 588888888 6899999999998876543
No 25
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.95 E-value=5.4e-09 Score=65.38 Aligned_cols=61 Identities=16% Similarity=0.324 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhCC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHhh------hCCCccHHHHHHHHHH
Q 032169 5 TANDLQRIFEKLDR-NG-DGLVSLEELNWVLER-----IGVHFTLEELEALV------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 5 ~~~~l~~~F~~~D~-d~-~G~i~~~e~~~~l~~-----l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~ 65 (146)
....++.+|..||. |+ +|.|+..||+.+|.. +|..++..++..++ ++|.|+|++|+.++..
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 46789999999997 97 799999999999986 56788889999988 7899999999988764
No 26
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.95 E-value=6.7e-09 Score=64.69 Aligned_cols=64 Identities=17% Similarity=0.364 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHhh------hCCCccHHHHHHHHHHHhh
Q 032169 5 TANDLQRIFEKLD-RNGDG-LVSLEELNWVLER-IG----VHFTLEELEALV------EKPSLCFDEFLFFCDSIIS 68 (146)
Q Consensus 5 ~~~~l~~~F~~~D-~d~~G-~i~~~e~~~~l~~-l~----~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~ 68 (146)
.+..++++|..|| .+++| .|+..||+.+|+. +| ..++..++..++ ++|.|+|++|+.++..+..
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 3678999999997 99999 5999999999985 43 456888899988 6899999999998876544
No 27
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.90 E-value=1.4e-08 Score=63.48 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhh
Q 032169 5 TANDLQRIFEKLD-RNGDG-LVSLEELNWVLERI-----GVHFTLEELEALV------EKPSLCFDEFLFFCDSIIS 68 (146)
Q Consensus 5 ~~~~l~~~F~~~D-~d~~G-~i~~~e~~~~l~~l-----~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~ 68 (146)
.+..+.++|..|| .|++| +|+..||+.++... +...+..++..++ ++|.|+|.||+.++..+..
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 4778899999999 78998 59999999999762 3345777888888 7899999999999876543
No 28
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.90 E-value=3.3e-08 Score=65.59 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=76.2
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHhh---hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHH
Q 032169 23 LVSLEELNWVLERIGVHFTLEELEALV---EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEIS 99 (146)
Q Consensus 23 ~i~~~e~~~~l~~l~~~~~~~~~~~l~---~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (146)
.++.+.+.. |-.+.-++-...+.+++ +.|.++|++|+.++..+..+ . ...-
T Consensus 55 ~vp~e~i~k-MPELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~-------------------A------Prdl 108 (189)
T KOG0038|consen 55 KVPFELIEK-MPELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEM-------------------A------PRDL 108 (189)
T ss_pred eecHHHHhh-ChhhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhh-------------------C------hHHh
Confidence 455544443 44466677778888888 88999999999999988776 2 3345
Q ss_pred HHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhhC
Q 032169 100 DLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLRV 146 (146)
Q Consensus 100 ~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~~ 146 (146)
.+..||+.||-|++++|..+++...++++.-. +++++|++.++.+|
T Consensus 109 K~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~-eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 109 KAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRD-ELSDEEVELICEKV 154 (189)
T ss_pred hhhheeEEeecCCCCcccHHHHHHHHHHHhhc-cCCHHHHHHHHHHH
Confidence 67899999999999999999999999998533 34999999888764
No 29
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.86 E-value=2.1e-08 Score=61.95 Aligned_cols=64 Identities=23% Similarity=0.417 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhCC-CC-CCcccHHHHHHHHHH---cCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhh
Q 032169 5 TANDLQRIFEKLDR-NG-DGLVSLEELNWVLER---IGVHFTLEELEALV------EKPSLCFDEFLFFCDSIIS 68 (146)
Q Consensus 5 ~~~~l~~~F~~~D~-d~-~G~i~~~e~~~~l~~---l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~ 68 (146)
.+..+-.+|..||. ++ +|+|+..||+.+|+. +|.+++.+++.+++ ++|.|+|.+|+.++.....
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 46778899999998 77 899999999999963 68889999999999 7899999999998876543
No 30
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.84 E-value=2.1e-08 Score=58.34 Aligned_cols=55 Identities=31% Similarity=0.424 Sum_probs=48.3
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHH
Q 032169 10 QRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSI 66 (146)
Q Consensus 10 ~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~ 66 (146)
+++|..+|.+++|.|+..|+..++..+|. +.+++..++ ++|.|+|++|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999998875 777788887 68999999999987654
No 31
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.78 E-value=1.2e-07 Score=66.34 Aligned_cols=100 Identities=23% Similarity=0.340 Sum_probs=78.5
Q ss_pred HHHHHHhCCCCCCc-ccHHHHHHHHHHcCCCCCHH-HHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCchhhh
Q 032169 10 QRIFEKLDRNGDGL-VSLEELNWVLERIGVHFTLE-ELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAAADA 81 (146)
Q Consensus 10 ~~~F~~~D~d~~G~-i~~~e~~~~l~~l~~~~~~~-~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~ 81 (146)
.++|..++.+++|. |+..+|.+.+..+..+-+.. .+.-.+ ++|.|+.+++..++..+...+...
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-------- 140 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-------- 140 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc--------
Confidence 56788999999888 99999999999886555554 555555 899999999999999887752110
Q ss_pred hcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHc
Q 032169 82 SQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARL 128 (146)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~ 128 (146)
.......-+...|..+|.+++|.|+.+||.+++...
T Consensus 141 -----------~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 141 -----------SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred -----------hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 001444556789999999999999999999998654
No 32
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.77 E-value=4.1e-08 Score=55.38 Aligned_cols=55 Identities=31% Similarity=0.606 Sum_probs=50.2
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHH
Q 032169 9 LQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFC 63 (146)
Q Consensus 9 l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~ 63 (146)
++.+|..+|.+++|.|+..++..++..++.+.+.+.+..++ ++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 67889999999999999999999999999999999888888 68899999998764
No 33
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.70 E-value=2.4e-08 Score=48.77 Aligned_cols=28 Identities=43% Similarity=0.714 Sum_probs=26.0
Q ss_pred HHHhhhccccCCCcceeHHHHHHHHHHc
Q 032169 101 LYKAFSVFDVNGDGFITSEELQSVLARL 128 (146)
Q Consensus 101 ~~~~F~~~D~~~~G~Is~~el~~~l~~~ 128 (146)
++.+|+.||+|++|+|+.+||..+++.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 6889999999999999999999999864
No 34
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.69 E-value=2.9e-08 Score=48.47 Aligned_cols=29 Identities=28% Similarity=0.761 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHc
Q 032169 8 DLQRIFEKLDRNGDGLVSLEELNWVLERI 36 (146)
Q Consensus 8 ~l~~~F~~~D~d~~G~i~~~e~~~~l~~l 36 (146)
+++.+|+.+|+|+||+|+.+||..+|+.|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 57899999999999999999999999864
No 35
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.68 E-value=2.4e-07 Score=57.39 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=52.2
Q ss_pred hHHHHHHHHHH-hCCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHhh------hCCCccHHHHHHHHHHHh
Q 032169 5 TANDLQRIFEK-LDRNGDG-LVSLEELNWVLERI-----GVHFTLEELEALV------EKPSLCFDEFLFFCDSII 67 (146)
Q Consensus 5 ~~~~l~~~F~~-~D~d~~G-~i~~~e~~~~l~~l-----~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~ 67 (146)
.+..|..+|.. +|.+++| .|+..||+.++..- +...++.++..++ ++|.|+|+||+.++..+.
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 47889999999 7788876 99999999999875 3345667888888 889999999999887653
No 36
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=4.8e-08 Score=72.42 Aligned_cols=116 Identities=17% Similarity=0.146 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCC-HHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCch
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFT-LEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAA 78 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~-~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~ 78 (146)
+.+-++-|+..|.|++|.++.+||..+|+-=..+.. .--+..-+ +||+|+++||+.-+...... ...
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~-~~e----- 235 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGN-EEE----- 235 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCC-CCC-----
Confidence 445567899999999999999999999873222211 11222222 89999999999977654431 110
Q ss_pred hhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 79 ADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
+. .....-.+.+..+|+|++|+++.+|+++.+..-+... ...+.+.|+.
T Consensus 236 ------------pe---Wv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~--A~~EA~hL~~ 284 (325)
T KOG4223|consen 236 ------------PE---WVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDH--AKAEARHLLH 284 (325)
T ss_pred ------------cc---cccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccH--HHHHHHHHhh
Confidence 00 1222233667778999999999999998886666555 5666666653
No 37
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.65 E-value=3.5e-07 Score=72.80 Aligned_cols=129 Identities=25% Similarity=0.350 Sum_probs=98.5
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHhh-----------hCCCccHHHHHHHHHHHhh
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLER-IGVHFTLEELEALV-----------EKPSLCFDEFLFFCDSIIS 68 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-l~~~~~~~~~~~l~-----------~dg~i~~~ef~~~~~~~~~ 68 (146)
|.+..++.|.++|...|.|.+|.++-.|+...-+. ++.++.+.++..+. ..+.++...|+.+...+..
T Consensus 189 lkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfie 268 (625)
T KOG1707|consen 189 LKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIE 268 (625)
T ss_pred ccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHH
Confidence 45667899999999999999999999999988765 48888887777766 4567888899999888888
Q ss_pred hcCCCCCCchhhhhcccccc-------------cCCCC---chhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcC
Q 032169 69 NNNNNNPNAAADASQNADEA-------------VDDDS---GDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLG 129 (146)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~---~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g 129 (146)
.+.....|.........+.. ...++ .+...+.+..+|..||.|+||.++..|+..++..++
T Consensus 269 rgr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 269 RGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred hccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 88887777764443111000 00000 114456788999999999999999999999999975
No 38
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.65 E-value=1.1e-07 Score=53.24 Aligned_cols=46 Identities=28% Similarity=0.560 Sum_probs=42.5
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHhh------hCCCccHHHHHHHHHH
Q 032169 20 GDGLVSLEELNWVLERIGVH-FTLEELEALV------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 20 ~~G~i~~~e~~~~l~~l~~~-~~~~~~~~l~------~dg~i~~~ef~~~~~~ 65 (146)
.+|.|+.++|..+|..+|.+ ++.+++..++ ++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 9999999999 8999999999998864
No 39
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=6.8e-07 Score=60.22 Aligned_cols=96 Identities=18% Similarity=0.356 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCch
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLER-IGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAA 78 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~ 78 (146)
..++.++..-+|++++|.|+.++|...+.. ++..-+.+++...| .+|+|++.+|......+-..
T Consensus 68 k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgen--------- 138 (172)
T KOG0028|consen 68 KEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGEN--------- 138 (172)
T ss_pred hHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCcc---------
Confidence 456777888889999999999999998755 46556889998888 89999999999887765443
Q ss_pred hhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 79 ADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
..-+.++..-.-+|.+++|-|+.+||.++++.
T Consensus 139 -----------------ltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 139 -----------------LTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred -----------------ccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 55678888888999999999999999998865
No 40
>PF14658 EF-hand_9: EF-hand domain
Probab=98.61 E-value=1.6e-07 Score=54.33 Aligned_cols=55 Identities=25% Similarity=0.352 Sum_probs=49.7
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHhh-------hCCCccHHHHHHHHHH
Q 032169 11 RIFEKLDRNGDGLVSLEELNWVLERIGV-HFTLEELEALV-------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 11 ~~F~~~D~d~~G~i~~~e~~~~l~~l~~-~~~~~~~~~l~-------~dg~i~~~ef~~~~~~ 65 (146)
.+|..||.++.|.|...++..+|++++. .++..+++.+. .+|.|+++.|+.++..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999988 89999999988 4589999999998864
No 41
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.59 E-value=4.1e-07 Score=78.45 Aligned_cols=98 Identities=18% Similarity=0.375 Sum_probs=79.3
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCH--H-----HHHHhh------hCCCccHHHHHHHHHHHhh
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTL--E-----ELEALV------EKPSLCFDEFLFFCDSIIS 68 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~--~-----~~~~l~------~dg~i~~~ef~~~~~~~~~ 68 (146)
|..+..++.-+|..||.+++|+++..+|..||+.+|++++. + ++..++ .+|+|+..+|+.++.....
T Consensus 2248 tEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ET 2327 (2399)
T KOG0040|consen 2248 TEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKET 2327 (2399)
T ss_pred CHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccc
Confidence 56788999999999999999999999999999999987622 2 455555 8999999999999876443
Q ss_pred hcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHH
Q 032169 69 NNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSV 124 (146)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~ 124 (146)
. .+ .....+..||+.+|. +.-+|+..++..-
T Consensus 2328 e-------------------NI-----~s~~eIE~AfraL~a-~~~yvtke~~~~~ 2358 (2399)
T KOG0040|consen 2328 E-------------------NI-----LSSEEIEDAFRALDA-GKPYVTKEELYQN 2358 (2399)
T ss_pred c-------------------cc-----cchHHHHHHHHHhhc-CCccccHHHHHhc
Confidence 3 11 334588999999999 8889998888543
No 42
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.56 E-value=1e-07 Score=47.28 Aligned_cols=29 Identities=55% Similarity=0.959 Sum_probs=26.0
Q ss_pred HHHhhhccccCCCcceeHHHHHHHHH-HcC
Q 032169 101 LYKAFSVFDVNGDGFITSEELQSVLA-RLG 129 (146)
Q Consensus 101 ~~~~F~~~D~~~~G~Is~~el~~~l~-~~g 129 (146)
++.+|+.||.+++|+|+.+||+.+++ .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 68899999999999999999999999 576
No 43
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.53 E-value=1.5e-07 Score=46.62 Aligned_cols=30 Identities=37% Similarity=0.814 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH-HcC
Q 032169 8 DLQRIFEKLDRNGDGLVSLEELNWVLE-RIG 37 (146)
Q Consensus 8 ~l~~~F~~~D~d~~G~i~~~e~~~~l~-~l~ 37 (146)
+++.+|..+|.|++|.|+..||..+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578999999999999999999999999 665
No 44
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.52 E-value=3.6e-07 Score=63.72 Aligned_cols=102 Identities=24% Similarity=0.378 Sum_probs=76.2
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCC
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNP 75 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~ 75 (146)
+..+|+.+...|..+|.+.||+|+..|++.+|..+|-|-|.--++.++ .+|+|+|.+|+-++.......-
T Consensus 94 srkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL---- 169 (244)
T KOG0041|consen 94 SRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGEL---- 169 (244)
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcccc----
Confidence 445788899999999999999999999999999999998887777777 8999999999998876544310
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHh--hhccccCCCcceeHHHHHHHHHH
Q 032169 76 NAAADASQNADEAVDDDSGDEEISDLYKA--FSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
. . ...+..+ ....|...-|......|-.+=-.
T Consensus 170 -------------~------~-ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~ 203 (244)
T KOG0041|consen 170 -------------Q------E-DSGLLRLARLSEVDVSKEGVSGAKNFFEAKIE 203 (244)
T ss_pred -------------c------c-chHHHHHHHhcccchhhhhhhhHHHHHHHHHH
Confidence 0 1 1112222 23478888887777776655433
No 45
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.45 E-value=1.2e-06 Score=56.83 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHH
Q 032169 4 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCD 64 (146)
Q Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~ 64 (146)
....++.-+|..+|.|++|.|+..|+..+. ..+....+..++ +||.||++||..++.
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 456788999999999999999999999876 234455556566 899999999999983
No 46
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.41 E-value=1.3e-06 Score=67.69 Aligned_cols=93 Identities=22% Similarity=0.315 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh----------hCCCccHHHHHHHHHHHhhhcCCCCC
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV----------EKPSLCFDEFLFFCDSIISNNNNNNP 75 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~----------~dg~i~~~ef~~~~~~~~~~~~~~~~ 75 (146)
-..+...|-.+|.|.+|.|+.+++...-.. .++..-++.+| .+|+++|++|+-++......
T Consensus 277 f~viy~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k------ 347 (493)
T KOG2562|consen 277 FYVIYCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDK------ 347 (493)
T ss_pred HHHHHHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccC------
Confidence 334455588999999999999999887643 34555566666 78999999999998775543
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 76 NAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
.....+...|+.+|.+++|.|+.+|++-+...
T Consensus 348 --------------------~t~~SleYwFrclDld~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 348 --------------------DTPASLEYWFRCLDLDGDGILTLNELRYFYEE 379 (493)
T ss_pred --------------------CCccchhhheeeeeccCCCcccHHHHHHHHHH
Confidence 55577899999999999999999999887754
No 47
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.40 E-value=2.1e-06 Score=52.99 Aligned_cols=65 Identities=12% Similarity=0.274 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhCCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHhh------hCCCccHHHHHHHHHHHhhh
Q 032169 5 TANDLQRIFEKLDRN--GDGLVSLEELNWVLE-RIGVHFT----LEELEALV------EKPSLCFDEFLFFCDSIISN 69 (146)
Q Consensus 5 ~~~~l~~~F~~~D~d--~~G~i~~~e~~~~l~-~l~~~~~----~~~~~~l~------~dg~i~~~ef~~~~~~~~~~ 69 (146)
.+..+...|..++.. .+|.|+..||+.+|. .++..++ ..++..++ ++|.|+|++|+.++......
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 467888999999965 479999999999997 5565566 78899988 78999999999998876543
No 48
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.39 E-value=4.4e-07 Score=52.68 Aligned_cols=42 Identities=36% Similarity=0.481 Sum_probs=37.0
Q ss_pred HHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 101 LYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 101 ~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
++.+|+.+|.+++|+|+.+||..++..++... ++.++++++.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~--~~~~~~~~~~ 43 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDM--SDEESDEMID 43 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHS--THHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccc--cHHHHHHHHH
Confidence 68999999999999999999999999999877 7777766643
No 49
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.37 E-value=6.9e-07 Score=55.26 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=43.1
Q ss_pred hHHHHHHHhhhcccc-CCCcceeHHHHHHHHHH-cCCCCCCCh-hHHHhhhhh
Q 032169 96 EEISDLYKAFSVFDV-NGDGFITSEELQSVLAR-LGLWDEEKQ-PRLQKHDLR 145 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~-~~~G~Is~~el~~~l~~-~g~~~~~~~-~~~~~l~~~ 145 (146)
.....++.+|+.||+ +++|+|+.+||+.+++. +|..+ ++ ++++.|+..
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~l--s~~~~v~~mi~~ 55 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLL--KDVEGLEEKMKN 55 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhc--cCHHHHHHHHHH
Confidence 456788999999999 99999999999999999 99877 88 899999864
No 50
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.34 E-value=3.1e-06 Score=56.73 Aligned_cols=60 Identities=22% Similarity=0.426 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHH
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~ 65 (146)
.+.+..+|..||.+++|.|+...|+.+|...|-.++++++..++ ..|.++|..|+.++.+
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 56788999999999999999999999999999999999999999 5899999999998873
No 51
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.33 E-value=2.5e-06 Score=56.23 Aligned_cols=60 Identities=27% Similarity=0.427 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh-----hCCCccHHHHHHHHH
Q 032169 5 TANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV-----EKPSLCFDEFLFFCD 64 (146)
Q Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~-----~dg~i~~~ef~~~~~ 64 (146)
+.+++.+-.+.||++++|.|...|++++|..+|-.++.+++..++ .+|.|.|+.|+..+.
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQEDSNGCINYEAFVKHIM 150 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccccccCCcCcHHHHHHHHh
Confidence 356777888999999999999999999999999999999999999 679999999988653
No 52
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.28 E-value=2.1e-06 Score=53.02 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=42.2
Q ss_pred hHHHHHHHhhhccc-cCCCc-ceeHHHHHHHHHH-----cCCCCCCChhHHHhhhhh
Q 032169 96 EEISDLYKAFSVFD-VNGDG-FITSEELQSVLAR-----LGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 96 ~~~~~~~~~F~~~D-~~~~G-~Is~~el~~~l~~-----~g~~~~~~~~~~~~l~~~ 145 (146)
.....++.+|+.|| ++|+| +|+.+||+.+|+. +|... ++++++.++..
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~--~~~~v~~~i~~ 59 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIK--EQEVVDKVMET 59 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCC--CHHHHHHHHHH
Confidence 44567899999998 89999 6999999999999 88877 99999999864
No 53
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.25 E-value=1.2e-06 Score=41.16 Aligned_cols=25 Identities=48% Similarity=0.760 Sum_probs=22.4
Q ss_pred HHHhhhccccCCCcceeHHHHHHHH
Q 032169 101 LYKAFSVFDVNGDGFITSEELQSVL 125 (146)
Q Consensus 101 ~~~~F~~~D~~~~G~Is~~el~~~l 125 (146)
++.+|+.+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999999864
No 54
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.25 E-value=6.3e-06 Score=64.62 Aligned_cols=105 Identities=21% Similarity=0.345 Sum_probs=84.1
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHc------CCCCCHHHHHHhh---hCCCccHHHHHHHHHHHhhhcCCCCCCc
Q 032169 7 NDLQRIFEKLDRNGDGLVSLEELNWVLERI------GVHFTLEELEALV---EKPSLCFDEFLFFCDSIISNNNNNNPNA 77 (146)
Q Consensus 7 ~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l------~~~~~~~~~~~l~---~dg~i~~~ef~~~~~~~~~~~~~~~~~~ 77 (146)
.....+|..||+.++|.++.+++..+.... .++++.+-+...| ....++|.+|.+++..+
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~----------- 176 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEF----------- 176 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHH-----------
Confidence 345678999999999999999999998765 3456667777777 44568999999988653
Q ss_pred hhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhh
Q 032169 78 AADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHD 143 (146)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~ 143 (146)
..+..+++|+..|+.++|+||.-+++.++...-.++ ....+++.+
T Consensus 177 -------------------~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~--lt~~v~~nl 221 (694)
T KOG0751|consen 177 -------------------QLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHL--LTPFVEENL 221 (694)
T ss_pred -------------------HHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhc--CCHHHhhhh
Confidence 345578999999999999999999999999887666 666666654
No 55
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.22 E-value=3.4e-06 Score=47.03 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=41.9
Q ss_pred hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 50 EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 50 ~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
.+|.|+.++|..++.. +... . .....+..+|..+|.+++|.|+.+||..++..
T Consensus 1 ~~G~i~~~~~~~~l~~-~g~~------------------~------~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSK-LGIK------------------D------LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHH-TTSS------------------S------SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHH-hCCC------------------C------CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3689999999999943 3220 0 22455999999999999999999999999864
No 56
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.15 E-value=3.3e-06 Score=39.67 Aligned_cols=25 Identities=36% Similarity=0.777 Sum_probs=22.5
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHH
Q 032169 9 LQRIFEKLDRNGDGLVSLEELNWVL 33 (146)
Q Consensus 9 l~~~F~~~D~d~~G~i~~~e~~~~l 33 (146)
|+++|..+|.|+||.|+..||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5678999999999999999998864
No 57
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.14 E-value=1.7e-05 Score=60.90 Aligned_cols=91 Identities=21% Similarity=0.222 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCchh
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAAA 79 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~ 79 (146)
.+....+|..+|.|.+|.++..||++.+.. .+.++..+| .||.|+.+|....+....-.
T Consensus 50 ~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~---------- 114 (463)
T KOG0036|consen 50 YEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQ---------- 114 (463)
T ss_pred hHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCc----------
Confidence 345566777777888888888888777753 344455555 67778777766666554332
Q ss_pred hhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 80 DASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
...+.+.+.|+..|+++++.|+.+|++..+..
T Consensus 115 ----------------l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 115 ----------------LSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred ----------------cCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 44556666777778888888888777776643
No 58
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.11 E-value=8.3e-06 Score=62.98 Aligned_cols=92 Identities=26% Similarity=0.379 Sum_probs=69.0
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHc------CC----------C----CCHHHHHHhh---hCCCccHHHHHHHH
Q 032169 7 NDLQRIFEKLDRNGDGLVSLEELNWVLERI------GV----------H----FTLEELEALV---EKPSLCFDEFLFFC 63 (146)
Q Consensus 7 ~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l------~~----------~----~~~~~~~~l~---~dg~i~~~ef~~~~ 63 (146)
..++-+|..||.|++|.|+.+||..+.+.+ |. . .+..-+..+| +++++++++|+.+.
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 456678999999999999999999887542 22 1 1111122222 78899999999998
Q ss_pred HHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHc
Q 032169 64 DSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARL 128 (146)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~ 128 (146)
.. ...+-++--|..+|+..+|.|+..+|..++-..
T Consensus 313 e~------------------------------Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~ 347 (489)
T KOG2643|consen 313 EN------------------------------LQEEILELEFERFDKGDSGAISEVDFAELLLAY 347 (489)
T ss_pred HH------------------------------HHHHHHHHHHHHhCcccccccCHHHHHHHHHHH
Confidence 76 334556667999999999999999999988765
No 59
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.07 E-value=7.6e-05 Score=49.82 Aligned_cols=97 Identities=21% Similarity=0.256 Sum_probs=72.9
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh--------hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhh
Q 032169 11 RIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV--------EKPSLCFDEFLFFCDSIISNNNNNNPNAAADAS 82 (146)
Q Consensus 11 ~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~--------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 82 (146)
++...|-.||.|.++.++|..++.-+. .+.+.+++..+ +|+.|.-++....+..+.+..
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~s-E~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~e------------ 141 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFS-EMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDE------------ 141 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHH-hhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhcc------------
Confidence 344556679999999999999998664 45566777666 899999999988887765441
Q ss_pred cccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcC
Q 032169 83 QNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLG 129 (146)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g 129 (146)
.+......-..++..-.|.||+|.|+..||.+++.+..
T Consensus 142 ---------Ls~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 142 ---------LSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred ---------CCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 11113344456778888999999999999999987654
No 60
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=1.4e-05 Score=59.50 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHH
Q 032169 5 TANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~ 65 (146)
...++..+|...|.+++|.|+..|+..++...-......+...-+ .+|.|+|.++......
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~ 141 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYG 141 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhh
Confidence 467899999999999999999999998876543333333333333 8999999999887653
No 61
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.97 E-value=1.9e-05 Score=48.97 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=39.5
Q ss_pred hHHHHHHHhhhccc-cCCCc-ceeHHHHHHHHHH-cCCCC--CCChhHHHhhhhh
Q 032169 96 EEISDLYKAFSVFD-VNGDG-FITSEELQSVLAR-LGLWD--EEKQPRLQKHDLR 145 (146)
Q Consensus 96 ~~~~~~~~~F~~~D-~~~~G-~Is~~el~~~l~~-~g~~~--~~~~~~~~~l~~~ 145 (146)
...+.++.+|+.|| .+++| .|+.+|++.+|+. +|..+ .+++++++.++..
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~ 60 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKE 60 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Confidence 44577999999997 99999 5999999999986 55321 2278899988764
No 62
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.96 E-value=3.3e-05 Score=60.03 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHhh------hCCCccHHHHHHHHHH
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERI----GVHFTLEELEALV------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l----~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~ 65 (146)
...+..+|+..|.|++|.|+.+||..+.+.+ ..+.+.+++.++. +||.|+++||+..+..
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 5668889999999999999999999987765 5678888888877 8999999999998764
No 63
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.95 E-value=1.9e-05 Score=49.26 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=39.9
Q ss_pred hHHHHHHHhhhcccc-CC-CcceeHHHHHHHHHH-----cCCCCCCChhHHHhhhhh
Q 032169 96 EEISDLYKAFSVFDV-NG-DGFITSEELQSVLAR-----LGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~-~~-~G~Is~~el~~~l~~-----~g~~~~~~~~~~~~l~~~ 145 (146)
.....+..+|..||. ++ +|.|+.+||+.++.. +|..+ ++++++.++..
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~--s~~ei~~~~~~ 59 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQK--DPMAVDKIMKD 59 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccc--cHHHHHHHHHH
Confidence 345678999999997 97 699999999999986 46666 88999988754
No 64
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.94 E-value=2.6e-05 Score=48.77 Aligned_cols=46 Identities=26% Similarity=0.280 Sum_probs=39.8
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
.....++.+|..+|.+++|.|+.++++.+++..| + ++++++.++..
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~--~~~ev~~i~~~ 52 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--L--PQTLLAKIWNL 52 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--C--CHHHHHHHHHH
Confidence 4567889999999999999999999999999865 5 78888888753
No 65
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.91 E-value=3e-05 Score=47.86 Aligned_cols=48 Identities=17% Similarity=0.280 Sum_probs=41.3
Q ss_pred hHHHHHHHhhhcccc-CC-CcceeHHHHHHHHHH---cCCCCCCChhHHHhhhhh
Q 032169 96 EEISDLYKAFSVFDV-NG-DGFITSEELQSVLAR---LGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~-~~-~G~Is~~el~~~l~~---~g~~~~~~~~~~~~l~~~ 145 (146)
.....+..+|..||. +| +|+|+.+||+++++. +|.++ ++++++++++.
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~--t~~ev~~m~~~ 59 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKL--QDAEIAKLMED 59 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCC--CHHHHHHHHHH
Confidence 445678899999998 77 899999999999973 68887 99999999864
No 66
>PLN02964 phosphatidylserine decarboxylase
Probab=97.90 E-value=6.2e-05 Score=61.67 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=53.8
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHH
Q 032169 7 NDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 7 ~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~ 65 (146)
..++++|..+|.+++|.|+..||..++..++...+.+++..+| ++|.|+++||..++..
T Consensus 179 ~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 179 SFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 3489999999999999999999999999988778888899988 8999999999998876
No 67
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.90 E-value=4e-05 Score=42.75 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=42.1
Q ss_pred hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHH
Q 032169 50 EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVL 125 (146)
Q Consensus 50 ~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l 125 (146)
++|.|++.+|..++...... .....+..+|..+|.+++|.|+.++|..++
T Consensus 13 ~~g~l~~~e~~~~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 13 GDGTISADELKAALKSLGEG--------------------------LSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CCCcCcHHHHHHHHHHhCCC--------------------------CCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 67899999999988765332 556778889999999999999999998765
No 68
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.86 E-value=0.00021 Score=44.15 Aligned_cols=62 Identities=10% Similarity=0.284 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-----cCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHh
Q 032169 5 TANDLQRIFEKLDRNGDGLVSLEELNWVLER-----IGVHFTLEELEALV------EKPSLCFDEFLFFCDSII 67 (146)
Q Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-----l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~ 67 (146)
.+.-+..+|..|.. +.+.++..||+..|+. +.-.-++..+..++ +||.|+|.||+.++..+.
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 46778889999984 4679999999999855 23344677788888 899999999999887653
No 69
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.85 E-value=0.0001 Score=57.08 Aligned_cols=124 Identities=20% Similarity=0.259 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-CCCCCHHH--HHHhh----h-CCCccHHHHHHHHHHHhhhcCCCCC
Q 032169 4 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERI-GVHFTLEE--LEALV----E-KPSLCFDEFLFFCDSIISNNNNNNP 75 (146)
Q Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l-~~~~~~~~--~~~l~----~-dg~i~~~ef~~~~~~~~~~~~~~~~ 75 (146)
++.+-++--|..+|+..+|.|+..+|..+|=+. +.+..... +..+- . +.-|++.||..++.-.-..+....+
T Consensus 315 Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~Ef~~Ff~Fl~~l~dfd~A 394 (489)
T KOG2643|consen 315 LQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQEFKAFFRFLNNLNDFDIA 394 (489)
T ss_pred HHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHhhhhHHHHH
Confidence 445556667999999999999999999887554 33332221 22222 3 4459999998876422221111000
Q ss_pred CchhhhhcccccccC------CCCch-hHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 76 NAAADASQNADEAVD------DDSGD-EEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 76 ~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
.............++ ..-+. .....+.-+|..||.|+||.|+..||..+++.
T Consensus 395 l~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 395 LRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 000000000000000 00000 11113345799999999999999999999986
No 70
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.80 E-value=3.7e-05 Score=47.20 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=40.2
Q ss_pred hHHHHHHHhhhcccc--CCCcceeHHHHHHHHHH-cCCCC--CCChhHHHhhhhh
Q 032169 96 EEISDLYKAFSVFDV--NGDGFITSEELQSVLAR-LGLWD--EEKQPRLQKHDLR 145 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~--~~~G~Is~~el~~~l~~-~g~~~--~~~~~~~~~l~~~ 145 (146)
.....++.+|..||+ +++|.|+.++|..+++. +|.++ ..+..+++.++..
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~ 59 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKD 59 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHH
Confidence 456778999999999 89999999999999986 56443 1258888888753
No 71
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.80 E-value=0.00012 Score=46.48 Aligned_cols=63 Identities=24% Similarity=0.387 Sum_probs=53.6
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHH
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSI 66 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~ 66 (146)
+|+.+++.+..+|..+|. ++|.|+-.+.+.++...+ ++.+.+..++ ++|.++++||+.++...
T Consensus 4 ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 467889999999999985 589999999999988765 6668899988 89999999999877544
No 72
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.79 E-value=3.1e-05 Score=44.67 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=33.2
Q ss_pred HHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 102 YKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 102 ~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
+.+|+.+|.+++|.|+.+|+..++..+| + +.++++.++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~--~~~~~~~i~~ 40 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--L--PRSVLAQIWD 40 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--C--CHHHHHHHHH
Confidence 5789999999999999999999999886 3 6777777764
No 73
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.76 E-value=0.00025 Score=55.95 Aligned_cols=97 Identities=21% Similarity=0.343 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHh---CCCCCCcccHHHHHHH-HHHcCCCCCHHHHHHhh-------hCCCccHHHHHHHHHHHhhhcCCC
Q 032169 5 TANDLQRIFEKL---DRNGDGLVSLEELNWV-LERIGVHFTLEELEALV-------EKPSLCFDEFLFFCDSIISNNNNN 73 (146)
Q Consensus 5 ~~~~l~~~F~~~---D~d~~G~i~~~e~~~~-l~~l~~~~~~~~~~~l~-------~dg~i~~~ef~~~~~~~~~~~~~~ 73 (146)
+.++++.+|-.+ +.++...++.++|... +..++.+-..+++-.+. +||.|+|+||+.+=....
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC------ 104 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC------ 104 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc------
Confidence 456777776555 5677788999999765 44445555556666666 899999999998543322
Q ss_pred CCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcC
Q 032169 74 NPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLG 129 (146)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g 129 (146)
.+......+|+.||+.++|.+|.+++..++....
T Consensus 105 ----------------------~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 105 ----------------------APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred ----------------------CchHHHHHHHHHhcccCCCceehHHHHHHHhccc
Confidence 2345678899999999999999999999998864
No 74
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.54 E-value=0.00037 Score=43.37 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=44.4
Q ss_pred hCC-CccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHc
Q 032169 50 EKP-SLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARL 128 (146)
Q Consensus 50 ~dg-~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~ 128 (146)
++| +|+..|+..++.......-.. . .....+..+++.+|.|++|.|+.+||..++..+
T Consensus 24 gdg~~Is~~EL~~ll~~~~~~~~~~---------------~------~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 24 GDRYKLSKGELKELLQRELTDFLSS---------------Q------KDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred CCCCEECHHHHHHHHHHHhHHhccc---------------c------cCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 566 599999999987643310000 0 234678999999999999999999999999876
Q ss_pred C
Q 032169 129 G 129 (146)
Q Consensus 129 g 129 (146)
.
T Consensus 83 ~ 83 (93)
T cd05026 83 T 83 (93)
T ss_pred H
Confidence 3
No 75
>PF14658 EF-hand_9: EF-hand domain
Probab=97.53 E-value=0.00019 Score=41.66 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=36.7
Q ss_pred HhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 103 KAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 103 ~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
.+|+.||.++.|.|...++..+|+.++.+ ++++.+++.+...
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~-~p~e~~Lq~l~~e 43 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGR-SPEESELQDLINE 43 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCC-CCcHHHHHHHHHH
Confidence 47999999999999999999999999884 2389999988754
No 76
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.51 E-value=0.00037 Score=45.17 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=42.8
Q ss_pred HHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcce
Q 032169 43 EELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFI 116 (146)
Q Consensus 43 ~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I 116 (146)
..+...| +||.|+..|+..+. + . .....+...|..+|.|++|.|
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~---l-~--------------------------~~e~~~~~f~~~~D~n~Dg~I 97 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR---L-D--------------------------PNEHCIKPFFESCDLDKDGSI 97 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH---c-c--------------------------chHHHHHHHHHHHCCCCCCCC
Confidence 4455555 89999999998765 1 1 335567889999999999999
Q ss_pred eHHHHHHHH
Q 032169 117 TSEELQSVL 125 (146)
Q Consensus 117 s~~el~~~l 125 (146)
|.+||...+
T Consensus 98 S~~Ef~~cl 106 (116)
T cd00252 98 SLDEWCYCF 106 (116)
T ss_pred CHHHHHHHH
Confidence 999999998
No 77
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.49 E-value=0.00044 Score=42.55 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=43.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHc
Q 032169 51 KPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARL 128 (146)
Q Consensus 51 dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~ 128 (146)
+|.|+.+|+..++......... .. .....+..+|+.+|.+++|.|+.+||..++..+
T Consensus 24 ~~~Is~~El~~ll~~~~g~~~t---------------~~------~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 24 PDTLYKKEFKQLVEKELPNFLK---------------KE------KNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred cccCCHHHHHHHHHHHhhHhhc---------------cC------CCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5789999999999754432000 00 226788999999999999999999999998765
No 78
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.45 E-value=0.00021 Score=33.30 Aligned_cols=28 Identities=32% Similarity=0.682 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 032169 8 DLQRIFEKLDRNGDGLVSLEELNWVLER 35 (146)
Q Consensus 8 ~l~~~F~~~D~d~~G~i~~~e~~~~l~~ 35 (146)
+++.+|..+|.+++|.|+..+|..+++.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 4678999999999999999999998874
No 79
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.35 E-value=0.002 Score=53.15 Aligned_cols=110 Identities=18% Similarity=0.305 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCchh
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAAA 79 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~ 79 (146)
...+..+|...|.+++|.++..+...+++.++..++...+..++ +++++...+|..+.......
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r---------- 204 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR---------- 204 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC----------
Confidence 45678899999999999999999999999998888888877777 78899999998877654322
Q ss_pred hhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 80 DASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
..+..+|..+-.+ .++++.+++..++...+..-..+.+.++++|++
T Consensus 205 -------------------pev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~ 250 (746)
T KOG0169|consen 205 -------------------PEVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIER 250 (746)
T ss_pred -------------------chHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 2677788877544 899999999999999853334488899988865
No 80
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.34 E-value=0.0011 Score=52.78 Aligned_cols=67 Identities=22% Similarity=0.371 Sum_probs=55.8
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCC---CHHHHHHhh------hCCCccHHHHHHHHHHHhh
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHF---TLEELEALV------EKPSLCFDEFLFFCDSIIS 68 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~---~~~~~~~l~------~dg~i~~~ef~~~~~~~~~ 68 (146)
+|..+..+++..|...| +++|+|+..++..++...+.+. ..++++.++ .+|.|+|++|+.++.....
T Consensus 13 ~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred ccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 35677888999999999 9999999999999999887654 357788877 7899999999997755443
No 81
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.28 E-value=0.0004 Score=32.27 Aligned_cols=27 Identities=44% Similarity=0.717 Sum_probs=24.5
Q ss_pred HHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 101 LYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 101 ~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
++.+|+.+|.+++|.|+.++|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567999999999999999999999875
No 82
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.24 E-value=0.001 Score=41.10 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=42.6
Q ss_pred CccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHc
Q 032169 53 SLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARL 128 (146)
Q Consensus 53 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~ 128 (146)
.|+..||..++...++.--. .. .....+..+++.+|.|++|.|+.+||..++..+
T Consensus 27 ~Ls~~Elk~ll~~e~~~~~~---------------~~------~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 27 QLSKTEFLSFMNTELASFTK---------------NQ------KDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred eECHHHHHHHHHHhhhHhhc---------------CC------CCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 79999999999876542000 01 334678889999999999999999999998765
No 83
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.21 E-value=0.0013 Score=51.29 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh---hCCCccHHHHHHHHHHHhh
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV---EKPSLCFDEFLFFCDSIIS 68 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~---~dg~i~~~ef~~~~~~~~~ 68 (146)
...+..+|+.+|.+++|.|+..||.. .+.+...+ ++|.|+++||..++...+.
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG----------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 56788999999999999999999942 12233333 8999999999999876554
No 84
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.11 E-value=0.00066 Score=46.63 Aligned_cols=110 Identities=21% Similarity=0.283 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhhhCCCccHHH---------HHHHHHHHhhhcCCCCCC
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEKPSLCFDE---------FLFFCDSIISNNNNNNPN 76 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~~dg~i~~~e---------f~~~~~~~~~~~~~~~~~ 76 (146)
...|++-...||+|+||.|.+-|-...++++|+++-..-+..++=.+.++|.. |.-.+..+.+.
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~------- 78 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKG------- 78 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeeccccc-------
Confidence 45677888899999999999999999999999998776666655111111111 10011111111
Q ss_pred chhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 77 AAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
.+..+-..=..+|+-..+.+..+|..+++.+.+.+|..|+.++++.
T Consensus 79 -----kHGSDSg~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 79 -----KHGSDSGAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred -----ccCCCccccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 0111110101223356688999999999999999999999999976
No 85
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.09 E-value=0.0019 Score=35.42 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=26.8
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHc
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARL 128 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~ 128 (146)
...+-+..+|+..|+.++|.+..+||..+++.+
T Consensus 18 ~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 18 MDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp --HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 455667889999999999999999999998764
No 86
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=96.92 E-value=0.0017 Score=45.69 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=39.2
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
.....+...|+.||.+.||+|+..|++.+|..+|.+- |.=-+..||..
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQ--THL~lK~mike 143 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQ--THLGLKNMIKE 143 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCch--hhHHHHHHHHH
Confidence 3445678899999999999999999999999999876 66555555543
No 87
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.85 E-value=0.0033 Score=47.40 Aligned_cols=96 Identities=14% Similarity=0.067 Sum_probs=74.4
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCchh
Q 032169 7 NDLQRIFEKLDRNGDGLVSLEELNWVLERIG-VHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAAA 79 (146)
Q Consensus 7 ~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~-~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~ 79 (146)
..+...|.+||.+++|.++..+-...+.-++ .+.++.-++--| .||.++-++|..++...+..
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv---------- 328 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV---------- 328 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc----------
Confidence 4577889999999999999999888887764 445555555555 78999988888887765443
Q ss_pred hhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcC
Q 032169 80 DASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLG 129 (146)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g 129 (146)
..-.+--.|...+...+|.|+.++|+++..+.+
T Consensus 329 -----------------~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 329 -----------------EVLRVPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred -----------------ceeeccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 122345679999999999999999999987754
No 88
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.71 E-value=0.0061 Score=33.45 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=31.1
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHH
Q 032169 23 LVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 23 ~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~ 65 (146)
+++..|++..|+.+++.++..-+..+| ++|.+..+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 367788888888888888888888888 7888888888887764
No 89
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.56 E-value=0.008 Score=46.88 Aligned_cols=24 Identities=42% Similarity=0.785 Sum_probs=12.0
Q ss_pred HHHHHHhhhccccCCCcceeHHHH
Q 032169 98 ISDLYKAFSVFDVNGDGFITSEEL 121 (146)
Q Consensus 98 ~~~~~~~F~~~D~~~~G~Is~~el 121 (146)
...++.+|+.+|.+++|.|+.+||
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~ 356 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEW 356 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHH
Confidence 344445555555555555555554
No 90
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.43 E-value=0.013 Score=36.27 Aligned_cols=59 Identities=22% Similarity=0.152 Sum_probs=45.5
Q ss_pred hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcC
Q 032169 50 EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLG 129 (146)
Q Consensus 50 ~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g 129 (146)
..+.++..||..++...++.--.. . .....+..+|+.+|.|+||.|+..||..++..+.
T Consensus 20 ~~~tLsk~Elk~Ll~~Elp~~l~~---------------~------~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 20 EKNYLNRDDLQKLMEKEFSEFLKN---------------Q------NDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCCcCCHHHHHHHHHHHhHHHHcC---------------C------CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456899999999987766541000 1 3456789999999999999999999999987653
No 91
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.35 E-value=0.026 Score=34.02 Aligned_cols=58 Identities=26% Similarity=0.377 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHhh----------hCCCccHHHHHHHHHHH
Q 032169 8 DLQRIFEKLDRNGDGLVSLEELNWVLERI-GV-HFTLEELEALV----------EKPSLCFDEFLFFCDSI 66 (146)
Q Consensus 8 ~l~~~F~~~D~d~~G~i~~~e~~~~l~~l-~~-~~~~~~~~~l~----------~dg~i~~~ef~~~~~~~ 66 (146)
+|..+|..+-. +.+.|+..+|...|..- +. ..+.+++..++ ..+.+++++|..++.+.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 57889999965 78999999999999865 33 46888888888 47889999999998653
No 92
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.21 E-value=0.013 Score=42.72 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-cC--CCCCHHHHHHhh------hCCCccHHHHHHHH
Q 032169 4 LTANDLQRIFEKLDRNGDGLVSLEELNWVLER-IG--VHFTLEELEALV------EKPSLCFDEFLFFC 63 (146)
Q Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-l~--~~~~~~~~~~l~------~dg~i~~~ef~~~~ 63 (146)
.....++.+|..-|.|.+|+|+..|+++++.. .. +.-+.++-+..| +||.|+++||-.-+
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 44678899999999999999999999876533 21 122223333344 88999999986644
No 93
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.11 E-value=0.0031 Score=40.65 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHH
Q 032169 5 TANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFF 62 (146)
Q Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~ 62 (146)
....+.=.|..+|.|+||.|+..|+..+...+ .+...=+..++ +||.|++.|+..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 35566677999999999999999999887644 22222244444 7999999998764
No 94
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.09 E-value=0.01 Score=37.75 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc
Q 032169 3 PLTANDLQRIFEKLDRNGDGLVSLEELNWVLERI 36 (146)
Q Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l 36 (146)
......|.+++...|.+++|+++..||..+|+.+
T Consensus 39 ~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 39 GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 3456789999999999999999999999999864
No 95
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.98 E-value=0.042 Score=46.70 Aligned_cols=94 Identities=18% Similarity=0.175 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCH-HH-HHHhh---------hCCCccHHHHHHHHHHHhhhcCC
Q 032169 4 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTL-EE-LEALV---------EKPSLCFDEFLFFCDSIISNNNN 72 (146)
Q Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~-~~-~~~l~---------~dg~i~~~ef~~~~~~~~~~~~~ 72 (146)
....++++.|+.++....|.+++++|..+|-.+|.+... ++ +.+++ ..|.++|.+|...+.+....
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~--- 820 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED--- 820 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh---
Confidence 457899999999999999999999999999999987764 22 33333 34889999999999876655
Q ss_pred CCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHH
Q 032169 73 NNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQS 123 (146)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~ 123 (146)
. .....+..+|..+-+++. +|..+|+..
T Consensus 821 ----------------l------~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 821 ----------------L------DTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred ----------------h------cHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 2 455666777887766555 799999887
No 96
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.027 Score=36.30 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=41.3
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHc------CC---C-CCHHHHHHhh----------hCCCccHHHHHHH
Q 032169 11 RIFEKLDRNGDGLVSLEELNWVLERI------GV---H-FTLEELEALV----------EKPSLCFDEFLFF 62 (146)
Q Consensus 11 ~~F~~~D~d~~G~i~~~e~~~~l~~l------~~---~-~~~~~~~~l~----------~dg~i~~~ef~~~ 62 (146)
..|...|-|++|.|+--|+..++... |. | ++..++..++ +||.|+|.||+..
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 35888999999999999999998764 22 2 3556777777 8999999999863
No 97
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=94.81 E-value=0.11 Score=38.03 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=19.9
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHH
Q 032169 10 QRIFEKLDRNGDGLVSLEELNWVLE 34 (146)
Q Consensus 10 ~~~F~~~D~d~~G~i~~~e~~~~l~ 34 (146)
+-.|+..|+|++|.|+++|+..-+.
T Consensus 143 kthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 143 KTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred hhheeeeCCCCCCceehhhhhhHHH
Confidence 3458888999999999999976443
No 98
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.68 E-value=0.17 Score=45.55 Aligned_cols=73 Identities=11% Similarity=0.113 Sum_probs=51.5
Q ss_pred hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcC
Q 032169 50 EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLG 129 (146)
Q Consensus 50 ~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g 129 (146)
..|.+++.+|-.|+.+.-.. -..++.+.+...+..+....|++.+|+|+..++..+|-.-.
T Consensus 2266 k~G~Ldhq~F~sCLrslgY~-------------------lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2266 KNGRLDHQHFKSCLRSLGYD-------------------LPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred hccCCcHHHHHHHHHhcCCC-------------------CcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 78999999999998764222 11122235566889999999999999999999999886542
Q ss_pred -CCCCCChhHHHhh
Q 032169 130 -LWDEEKQPRLQKH 142 (146)
Q Consensus 130 -~~~~~~~~~~~~l 142 (146)
.++ .+..+|+.-
T Consensus 2327 TeNI-~s~~eIE~A 2339 (2399)
T KOG0040|consen 2327 TENI-LSSEEIEDA 2339 (2399)
T ss_pred cccc-cchHHHHHH
Confidence 222 144455543
No 99
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.52 E-value=0.15 Score=41.60 Aligned_cols=63 Identities=29% Similarity=0.333 Sum_probs=47.4
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCC-CCCH---HHHHHhhhCCCccHHHHHHHHH
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGV-HFTL---EELEALVEKPSLCFDEFLFFCD 64 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~-~~~~---~~~~~l~~dg~i~~~ef~~~~~ 64 (146)
++.-+.-+..+|..||.|+||-++..|+..+.+.++. +++. .+....-..|.++|+.|+..+.
T Consensus 310 s~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 310 SPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred cHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHH
Confidence 4556788999999999999999999999999998743 3221 1111111779999999998775
No 100
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.46 E-value=0.12 Score=41.96 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=60.3
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhh
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISN 69 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~ 69 (146)
||+++....+.-|..+|.|+.|+++..+...+|+..+.+++.+.+.+++ ..|.+...+|..++......
T Consensus 587 ~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 587 LTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred cCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 5778888899999999999999999999999999999889888888777 58899999999988765443
No 101
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.42 E-value=0.15 Score=30.62 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=35.1
Q ss_pred HHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 101 LYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 101 ~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
+..+|..+-. +.+.||.++|++.|..-.-...++.+++..++.+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~ 45 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEK 45 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHH
Confidence 6788999955 8999999999999998753323389999998864
No 102
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=94.39 E-value=0.38 Score=38.18 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=71.2
Q ss_pred HHHHHHH----HhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCc
Q 032169 8 DLQRIFE----KLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNA 77 (146)
Q Consensus 8 ~l~~~F~----~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~ 77 (146)
-+.++|. .+-...+|+++..+|...+-++-..-++.-+.-.| ++|.++..|.-.++...+..=
T Consensus 312 ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm------- 384 (493)
T KOG2562|consen 312 IVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRM------- 384 (493)
T ss_pred HHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHH-------
Confidence 3567787 45567789999999999998886666666677666 999999998877765444330
Q ss_pred hhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHH
Q 032169 78 AADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQS 123 (146)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~ 123 (146)
.....++. ..+..+.++|+..-....|.||..+|+.
T Consensus 385 ----~~~~~e~l------~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 385 ----ECMGQEAL------PFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred ----HhcCCCcc------cHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 00111111 5556667888888888899999999987
No 103
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.15 E-value=0.55 Score=30.40 Aligned_cols=71 Identities=21% Similarity=0.106 Sum_probs=48.4
Q ss_pred CCCHHHHHHhh-------hCCCccHHHHHHHHHHHhhh--cCC-CCCCchhhhhcccccccCCCCchhHHHHHHHhhhcc
Q 032169 39 HFTLEELEALV-------EKPSLCFDEFLFFCDSIISN--NNN-NNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVF 108 (146)
Q Consensus 39 ~~~~~~~~~l~-------~dg~i~~~ef~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~ 108 (146)
++++++++..+ +++.++=-|.+..+.+.... ++. ..|..+ ...-..-+..+.+--
T Consensus 62 ~mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~s---------------E~Ele~~iD~vL~Dd 126 (144)
T KOG4065|consen 62 KMTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSS---------------EAELERLIDAVLDDD 126 (144)
T ss_pred hCCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCC---------------HHHHHHHHHHHhccc
Confidence 57888887776 78888888988888776652 111 111111 113344556778888
Q ss_pred ccCCCcceeHHHHHHH
Q 032169 109 DVNGDGFITSEELQSV 124 (146)
Q Consensus 109 D~~~~G~Is~~el~~~ 124 (146)
|.|++|+|++.||.+.
T Consensus 127 DfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 127 DFNGDGVIDYGEFLKR 142 (144)
T ss_pred ccCCCceeeHHHHHhh
Confidence 9999999999999754
No 104
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.28 E-value=0.16 Score=38.84 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCc
Q 032169 7 NDLQRIFEKLDRNGDGLVSLEELNWVLERIGV---HFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNA 77 (146)
Q Consensus 7 ~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~---~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~ 77 (146)
.+|+..|..+=.+.++......+..+-..+.. +.=..++..+| .|+.++..|...+...
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld------------ 278 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD------------ 278 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc------------
Confidence 46777888887788887777777666554432 33346777777 7888999987765532
Q ss_pred hhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCC
Q 032169 78 AADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGL 130 (146)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~ 130 (146)
.++.-++..|...|...+|.|+.+|+..-+..-+.
T Consensus 279 ------------------knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~ 313 (434)
T KOG3555|consen 279 ------------------KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSDP 313 (434)
T ss_pred ------------------CchhHHHHHHhhhcccccCccccchhhhhhccCCC
Confidence 66778999999999999999999999998877663
No 105
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=92.95 E-value=0.53 Score=31.99 Aligned_cols=61 Identities=11% Similarity=0.321 Sum_probs=44.6
Q ss_pred HHHHHHHh---CCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHhh------hCCCccHHHHHHHHHHHhhh
Q 032169 9 LQRIFEKL---DRNGDGLVSLEELNWVLERIGV---HFTLEELEALV------EKPSLCFDEFLFFCDSIISN 69 (146)
Q Consensus 9 l~~~F~~~---D~d~~G~i~~~e~~~~l~~l~~---~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~ 69 (146)
|+++|..| -..+...++-..|..+++.+++ .++..++.-+| +...|+|++|..++..+...
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~ 73 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEK 73 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHH
Confidence 34555555 3455678999999999998754 57888888888 34569999999998765544
No 106
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=0.34 Score=38.94 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=53.4
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHH
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSI 66 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~ 66 (146)
+|+++++-.-..|+..-+|-+|+|+-.--+.++..-. +.-.++..+| .||-+++.||++.+...
T Consensus 225 IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 225 ITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred cCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 4788888899999999999999999988888887654 4557888888 89999999999987543
No 107
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=92.60 E-value=0.11 Score=39.43 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=46.0
Q ss_pred hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHc-
Q 032169 50 EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARL- 128 (146)
Q Consensus 50 ~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~- 128 (146)
++|.++|.+.+..+...... . ....-++.+|+.|+.+.||.++.++|--+|+..
T Consensus 272 ~tg~~D~re~v~~lavlc~p-------------------~------~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l 326 (412)
T KOG4666|consen 272 TTGNGDYRETVKTLAVLCGP-------------------P------VTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL 326 (412)
T ss_pred CCCcccHHHHhhhheeeeCC-------------------C------CcHHHHHHHHHhcccccccccchHHHHHHHHHhc
Confidence 89999999988877665444 2 455678899999999999999999999999874
Q ss_pred CC
Q 032169 129 GL 130 (146)
Q Consensus 129 g~ 130 (146)
|.
T Consensus 327 gv 328 (412)
T KOG4666|consen 327 GV 328 (412)
T ss_pred Cc
Confidence 53
No 108
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=92.34 E-value=0.13 Score=30.19 Aligned_cols=29 Identities=24% Similarity=0.533 Sum_probs=25.3
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHH
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVL 125 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l 125 (146)
...+.+..+|+.+ .++.++||.++|++.|
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 3457899999999 8889999999999986
No 109
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.96 E-value=0.32 Score=39.07 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc
Q 032169 4 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERI 36 (146)
Q Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l 36 (146)
..+.+|..++.+.|.|+||.++..||+.+++..
T Consensus 262 lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 262 LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 458899999999999999999999999999874
No 110
>PLN02952 phosphoinositide phospholipase C
Probab=90.73 E-value=0.91 Score=37.55 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=49.3
Q ss_pred hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcC
Q 032169 50 EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLG 129 (146)
Q Consensus 50 ~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g 129 (146)
+.|.++|.+|..++..+-... . ....++..+|..+-. +.+.++.++|..+|...+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~------------------~------~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITE------------------A------EPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQ 67 (599)
T ss_pred cCCCcCHHHHHHHHHHhcccc------------------C------CChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhC
Confidence 457899999987776543210 1 356789999999954 447899999999999985
Q ss_pred CCCCCChhHHHhhhh
Q 032169 130 LWDEEKQPRLQKHDL 144 (146)
Q Consensus 130 ~~~~~~~~~~~~l~~ 144 (146)
-....+.++++.++.
T Consensus 68 ~e~~~~~~~~~~i~~ 82 (599)
T PLN02952 68 DELDCTLAEAQRIVE 82 (599)
T ss_pred CCcCCCHHHHHHHHH
Confidence 322236667766643
No 111
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.33 E-value=0.88 Score=38.57 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHH
Q 032169 4 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFC 63 (146)
Q Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~ 63 (146)
.+....+++|+.+|+..+|+++-.+-+.+|-..+ ++...+..++ +||+++-+||+-.+
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 3466788999999999999999999999886554 5556777777 99999999998754
No 112
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.26 E-value=1 Score=34.94 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=33.1
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCC
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWD 132 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~ 132 (146)
...+.++++|+.+|..++|+|+-+-++.++...+..+
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~v 342 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLV 342 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccc
Confidence 5578999999999999999999999999999888444
No 113
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=86.96 E-value=1.4 Score=29.46 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=36.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHhh-------------hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhccccc
Q 032169 21 DGLVSLEELNWVLERIGVHFTLEELEALV-------------EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADE 87 (146)
Q Consensus 21 ~G~i~~~e~~~~l~~l~~~~~~~~~~~l~-------------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (146)
=+.|++.||...-+-+.. +...++.++ ..+.|+|+.|..++...+..
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~------------------ 64 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEV------------------ 64 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-------------------
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcC------------------
Confidence 367888888877665532 233444444 45589999999999988876
Q ss_pred ccCCCCchhHHHHHHHhhhccccCC
Q 032169 88 AVDDDSGDEEISDLYKAFSVFDVNG 112 (146)
Q Consensus 88 ~~~~~~~~~~~~~~~~~F~~~D~~~ 112 (146)
. .+.+..+.+|..|-+..
T Consensus 65 -d------~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 65 -D------LPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp -S--------HHHHHHHHHHS----
T ss_pred -C------CCHHHHHHHHHHHhCcc
Confidence 2 55666778888885433
No 114
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=86.53 E-value=1.4 Score=40.09 Aligned_cols=51 Identities=24% Similarity=0.500 Sum_probs=41.0
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHH
Q 032169 12 IFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFC 63 (146)
Q Consensus 12 ~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~ 63 (146)
.|..+|+|+.|.|+..+|..+|..- ...+..++..++ ....++|.+|+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4778899999999999999999843 256778888777 45678999988755
No 115
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=85.81 E-value=3.2 Score=26.03 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh---------hCCCccHHHHHHHHHHHh
Q 032169 7 NDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV---------EKPSLCFDEFLFFCDSII 67 (146)
Q Consensus 7 ~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~---------~dg~i~~~ef~~~~~~~~ 67 (146)
.++++-|..+-. +|+|+...|..|+. .+-+.+-..++| ....|+.+|...++..+.
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIG---M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIG---MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcC---CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 456777887766 89999999998874 455677777777 567899999888887653
No 116
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=85.40 E-value=4.5 Score=26.56 Aligned_cols=70 Identities=21% Similarity=0.168 Sum_probs=40.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHc
Q 032169 51 KPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARL 128 (146)
Q Consensus 51 dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~ 128 (146)
+..++..+...++.......+.+.|.....+....+ . ...-.+..++..||.+++|.|+.-.++-++..+
T Consensus 57 d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~--~------a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 57 DSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVD--L------AVDLLLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-------H------HHHHHHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHH--H------HHHHHHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 567899999888887763311111100000000000 0 334456789999999999999999999888654
No 117
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=85.16 E-value=0.87 Score=31.54 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=31.5
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCC
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWD 132 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~ 132 (146)
.....+.+-...||.|+||.|.+-|--..++.+|.++
T Consensus 4 ~~~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~ 40 (174)
T PF05042_consen 4 NNMTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGI 40 (174)
T ss_pred ccccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCH
Confidence 3345667777889999999999999999999999875
No 118
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=84.67 E-value=6.7 Score=34.10 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=37.2
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcC----------CCCCCChhHHHhhhhh
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLG----------LWDEEKQPRLQKHDLR 145 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g----------~~~~~~~~~~~~l~~~ 145 (146)
.....+..+|..+-.++.-++|.++|..+++.-. .+. .+..+..+|..
T Consensus 218 cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~--~~~r~~~liek 275 (1189)
T KOG1265|consen 218 CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPA--DPRRIQSLIEK 275 (1189)
T ss_pred CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCC--CHHHHHHHHHH
Confidence 4456789999999988889999999999998732 234 66777777653
No 119
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=83.49 E-value=8.2 Score=28.70 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=54.1
Q ss_pred CCCCcccHHHHHHHHHHc--CCCCCHHH---HHHhh---hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccC
Q 032169 19 NGDGLVSLEELNWVLERI--GVHFTLEE---LEALV---EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVD 90 (146)
Q Consensus 19 d~~G~i~~~e~~~~l~~l--~~~~~~~~---~~~l~---~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (146)
.-||.|+..|.. ..+.+ ...++.++ +..++ .....++.+|+.-+...... +.
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~-------------------r~ 126 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGG-------------------RF 126 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcc-------------------cH
Confidence 448999999998 33333 23445555 66777 34457788888877654432 00
Q ss_pred CCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 91 DDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 91 ~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
......+...|..-= -||.++..|-. ++..+..-+.++..+++.+..
T Consensus 127 ----~l~~~lL~~l~~vA~--ADG~l~~~E~~-~L~~Ia~~Lgis~~df~~~~~ 173 (267)
T PRK09430 127 ----DLLRMFLEIQIQAAF--ADGSLHPNERQ-VLYVIAEELGFSRFQFDQLLR 173 (267)
T ss_pred ----HHHHHHHHHHHHHHH--hcCCCCHHHHH-HHHHHHHHcCCCHHHHHHHHH
Confidence 011112244455432 34778888844 333433222237777766654
No 120
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=83.00 E-value=2.4 Score=35.16 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=37.2
Q ss_pred hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHH
Q 032169 50 EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEEL 121 (146)
Q Consensus 50 ~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el 121 (146)
.+|.++|.+++..+...... ...+.++..|+.+|.+++ ....+++
T Consensus 568 ~~g~Ltf~~lv~gL~~l~~~--------------------------~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 568 MTGLLTFKDLVSGLSILKAG--------------------------DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred CcceeEHHHHHHHHHHHHhh--------------------------hHHHHHHHHHhhccCCcc-ccccccc
Confidence 78889999998888877665 677888888999998888 8887777
No 121
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=80.96 E-value=4 Score=33.27 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=38.0
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCC-CCChhHHHhhhhh
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWD-EEKQPRLQKHDLR 145 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~-~~~~~~~~~l~~~ 145 (146)
.....++..|...| +++|+|+..++..++...+... ....+++++++..
T Consensus 16 ~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~ 65 (627)
T KOG0046|consen 16 EELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGE 65 (627)
T ss_pred HHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhc
Confidence 44567889999999 9999999999999999876542 1137777777653
No 122
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=80.92 E-value=3.5 Score=31.84 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHH
Q 032169 5 TANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~ 65 (146)
-..++-=+|..+|.+.+|.|+..|++.+-. .-...=++.+| .||.|+-+|++.++..
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 345666789999999999999999987542 33444566666 8999999999988753
No 123
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=80.18 E-value=2.9 Score=34.73 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=29.4
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcC
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLG 129 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g 129 (146)
.....+.++|+.+|.+++|.|+..++...|..+-
T Consensus 552 ~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~ 585 (671)
T KOG4347|consen 552 VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK 585 (671)
T ss_pred HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH
Confidence 4456678999999999999999999999998764
No 124
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=79.31 E-value=3 Score=25.42 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=25.3
Q ss_pred cceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 114 GFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 114 G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
..||.+||..+.+..|.++ |+++.+.++.
T Consensus 13 n~iT~~eLlkyskqy~i~i--t~~QA~~I~~ 41 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISI--TKKQAEQIAN 41 (85)
T ss_pred hcCCHHHHHHHHHHhCCCC--CHHHHHHHHH
Confidence 3689999999999999999 9998888764
No 125
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=79.13 E-value=2.9 Score=24.46 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLE 34 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~ 34 (146)
.+++..+|+.+ .++.++|+..+|+..|.
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 46788999999 67789999999999864
No 126
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=78.87 E-value=2 Score=27.59 Aligned_cols=26 Identities=31% Similarity=0.249 Sum_probs=19.7
Q ss_pred HHHHHHhhhccccCCCcceeHHHHHH
Q 032169 98 ISDLYKAFSVFDVNGDGFITSEELQS 123 (146)
Q Consensus 98 ~~~~~~~F~~~D~~~~G~Is~~el~~ 123 (146)
..-++..|+..|.|++|.||..|+..
T Consensus 87 e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 87 EHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 44578888999999999999999864
No 127
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=78.79 E-value=13 Score=22.96 Aligned_cols=79 Identities=19% Similarity=0.143 Sum_probs=51.2
Q ss_pred CCCcccHHHHHHHHHHcC--CCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCC
Q 032169 20 GDGLVSLEELNWVLERIG--VHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDD 91 (146)
Q Consensus 20 ~~G~i~~~e~~~~l~~l~--~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (146)
-||.++..|...+-+.+. +.++..+...++ .....++.+|...+...... .
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-- 70 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDY-------------------E-- 70 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCH-------------------H--
Confidence 378999999887765431 356666666666 45567888888877654322 1
Q ss_pred CCchhHHHHHHHhhhccccCCCcceeHHHHHHHH
Q 032169 92 DSGDEEISDLYKAFSVFDVNGDGFITSEELQSVL 125 (146)
Q Consensus 92 ~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l 125 (146)
.....+..+|..-- -||.++..|-.-+-
T Consensus 71 ----~r~~~l~~L~~vA~--ADG~~~~~E~~~l~ 98 (104)
T cd07313 71 ----ERLELVEALWEVAY--ADGELDEYEEHLIR 98 (104)
T ss_pred ----HHHHHHHHHHHHHH--hcCCCCHHHHHHHH
Confidence 44556666777764 44778887766543
No 128
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=77.97 E-value=14 Score=28.29 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=15.9
Q ss_pred HhhhccccCCCcceeHHHHHHHHH
Q 032169 103 KAFSVFDVNGDGFITSEELQSVLA 126 (146)
Q Consensus 103 ~~F~~~D~~~~G~Is~~el~~~l~ 126 (146)
.+.+..|.|.+-.||.+||...-.
T Consensus 300 HVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 300 HVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred HHHHhcccchhhhhhHHHHHhhhh
Confidence 455667777777777777765443
No 129
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=77.94 E-value=4.7 Score=25.76 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=36.0
Q ss_pred HHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 102 YKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 102 ~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
-.+|-.++.-++-..+..+++.+|..+|..+ .++.++.++..
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~--d~e~i~~vise 45 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEI--DDERINLVLSE 45 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCccc--CHHHHHHHHHH
Confidence 4567778888888999999999999999988 88888888764
No 130
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=77.56 E-value=4 Score=18.01 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=13.4
Q ss_pred CCCCCCcccHHHHHHHHH
Q 032169 17 DRNGDGLVSLEELNWVLE 34 (146)
Q Consensus 17 D~d~~G~i~~~e~~~~l~ 34 (146)
|.|++|.|+.-++..+-+
T Consensus 1 DvN~DG~vna~D~~~lk~ 18 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLKK 18 (21)
T ss_dssp -TTSSSSSSHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHH
Confidence 678999999988876543
No 131
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=77.41 E-value=15 Score=22.88 Aligned_cols=88 Identities=14% Similarity=0.226 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhhhCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhccc
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNA 85 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (146)
.+.++..|..+- ..|+..++..+++.+| ++..+|..+-.+..-+.+....++
T Consensus 3 ~~~l~~~f~~i~----~~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~~~~eq~~qmL---------------------- 54 (96)
T cd08315 3 QETLRRSFDHFI----KEVPFDSWNRLMRQLG--LSENEIDVAKANERVTREQLYQML---------------------- 54 (96)
T ss_pred HhHHHHHHHHHH----HHCCHHHHHHHHHHcC--CCHHHHHHHHHHCCCCHHHHHHHH----------------------
Confidence 456777787773 4588889999998887 677777776522222222222222
Q ss_pred ccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhh
Q 032169 86 DEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHD 143 (146)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~ 143 (146)
..+=......-|.+.+..+|..++.+. ..+.|+..+
T Consensus 55 --------------------~~W~~~~G~~At~~~L~~aL~~~~~~~--~Ae~I~~~l 90 (96)
T cd08315 55 --------------------LTWVNKTGRKASVNTLLDALEAIGLRL--AKESIQDEL 90 (96)
T ss_pred --------------------HHHHHhhCCCcHHHHHHHHHHHccccc--HHHHHHHHH
Confidence 222111111345788888888888877 788877654
No 132
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=77.27 E-value=2.1 Score=32.78 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=38.9
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh-------hCCCccHHHHHHHHHH
Q 032169 10 QRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV-------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 10 ~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~-------~dg~i~~~ef~~~~~~ 65 (146)
.=.|..+|+|.++-|...|++-+=..+--.........-| +|.+|+++|+..++..
T Consensus 336 ~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 336 HWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3358999999999999999876544332222333333333 8999999999998864
No 133
>PLN02952 phosphoinositide phospholipase C
Probab=76.77 E-value=21 Score=29.81 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=37.5
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHhh-----hCCCccHHHHHHHHHHHh
Q 032169 20 GDGLVSLEELNWVLERIGV--HFTLEELEALV-----EKPSLCFDEFLFFCDSII 67 (146)
Q Consensus 20 ~~G~i~~~e~~~~l~~l~~--~~~~~~~~~l~-----~dg~i~~~ef~~~~~~~~ 67 (146)
+.|.++..+|..+.+.+.. .....++..+| +.+.++.++|..++....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQ 67 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhC
Confidence 4689999999988777632 23678899999 446899999999987644
No 134
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.53 E-value=20 Score=24.09 Aligned_cols=88 Identities=17% Similarity=0.190 Sum_probs=59.5
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHc--CCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhh
Q 032169 11 RIFEKLDRNGDGLVSLEELNWVLERI--GVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAAADAS 82 (146)
Q Consensus 11 ~~F~~~D~d~~G~i~~~e~~~~l~~l--~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 82 (146)
-+|.... -||.++..|.......+ .+.++.+++..++ +...+++-.|...+.+.+..
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~------------- 98 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDE------------- 98 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCH-------------
Confidence 4566654 45778888776655444 5567788888888 44567888888877765554
Q ss_pred cccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 83 QNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
. ...+.+...|+..- .||.++..|-.-+++.
T Consensus 99 ------e------~R~eli~~mweIa~--ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 99 ------E------QRLELIGLMWEIAY--ADGELDESEDHVIWRV 129 (148)
T ss_pred ------H------HHHHHHHHHHHHHH--ccccccHHHHHHHHHH
Confidence 1 55667777888865 4567777776655554
No 135
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.09 E-value=4.9 Score=31.33 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHh
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEAL 48 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l 48 (146)
-..++++|..+|+.++|+|+-.-+..+|..++...+....-.+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l 350 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVML 350 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHH
Confidence 4678999999999999999999999999998865555444333
No 136
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=74.67 E-value=17 Score=22.38 Aligned_cols=58 Identities=16% Similarity=0.354 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHc-------C----CCCCHHHHHHhh----hCCCccHHHHHHHHHH
Q 032169 7 NDLQRIFEKLDRNGDGLVSLEELNWVLERI-------G----VHFTLEELEALV----EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 7 ~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l-------~----~~~~~~~~~~l~----~dg~i~~~ef~~~~~~ 65 (146)
.+++-+|..+ .|.+|.++...|...|+.+ | +.....-+..-| ....|+.++|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHh
Confidence 5788899998 6889999999999887763 1 112445555555 3678999999998765
No 137
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=73.66 E-value=21 Score=22.86 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=45.6
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh--hCCCccHHHHHHHH
Q 032169 9 LQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV--EKPSLCFDEFLFFC 63 (146)
Q Consensus 9 l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~--~dg~i~~~ef~~~~ 63 (146)
+..+|-+++.-++-..+..++..+|...|.....+.+..++ -.|+ +.+|.+.-=
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~GK-~i~ElIA~G 58 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELKGK-DIEELIAAG 58 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhcCC-CHHHHHHHh
Confidence 45678888888888899999999999999999999999999 5566 788877643
No 138
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=73.59 E-value=12 Score=25.83 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=29.7
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
.....+..+++.+-.++...++..+|...+ |..+.+|+++++..+.
T Consensus 82 kt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c---GVGV~VT~E~I~~~V~ 127 (164)
T PF04558_consen 82 KTNLQLDAALKYLKSNPSEPIDVAEFEKAC---GVGVVVTPEQIEAAVE 127 (164)
T ss_dssp -SHHHHHHHHHHHHHHGG-G--HHHHHHTT---TTT----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHc---CCCeEECHHHHHHHHH
Confidence 345778889999877777789999988654 7777779999988664
No 139
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=69.74 E-value=7.6 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=21.9
Q ss_pred HHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 99 SDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 99 ~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
+.++.+|+.+ .|.+|.++...|..+|..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d 30 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHD 30 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHH
Confidence 5689999999 789999999999998875
No 140
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=69.63 E-value=7.7 Score=22.33 Aligned_cols=32 Identities=6% Similarity=0.186 Sum_probs=27.9
Q ss_pred CcceeHHHHHHHHHHcCCCCCCChhHHHhhhhhC
Q 032169 113 DGFITSEELQSVLARLGLWDEEKQPRLQKHDLRV 146 (146)
Q Consensus 113 ~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~~ 146 (146)
+--|+.+.++.++..+|-+. |+..++.+++++
T Consensus 29 NPpine~mir~M~~QMG~kp--Sekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKP--SEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHH
Confidence 44799999999999999988 999999987753
No 141
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=68.75 E-value=4.4 Score=37.43 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=49.0
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHH--Hhh-------hCCCccHHHHHHHHHH
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELE--ALV-------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~--~l~-------~dg~i~~~ef~~~~~~ 65 (146)
+++-+.+++++++..+|++..|+|+..++...++.+..++.-..-+ +++ .++.+++.+-+.++..
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHHH
Confidence 3566789999999999999999999999999999874432211100 333 7889999988877653
No 142
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=68.61 E-value=16 Score=21.35 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=23.0
Q ss_pred HHHHhhhccccCCCcceeHHHHHHHHHHc-CCC
Q 032169 100 DLYKAFSVFDVNGDGFITSEELQSVLARL-GLW 131 (146)
Q Consensus 100 ~~~~~F~~~D~~~~G~Is~~el~~~l~~~-g~~ 131 (146)
.+..+...|+.=+.+.|+.+||.+.++.+ |..
T Consensus 26 ~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~ 58 (70)
T PF12174_consen 26 KMDLLQKHYEEFKKKKISREEFVRKLRQIVGDQ 58 (70)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 34444455555578899999999999886 543
No 143
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=67.13 E-value=12 Score=24.13 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=32.4
Q ss_pred HHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 102 YKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 102 ~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
..+|-..-.-|+..+|.+++..+|...|..+ ....+..++.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveV--d~~~~~l~~~ 46 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADV--EDDVLDNFFK 46 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCc--cHHHHHHHHH
Confidence 4556666677888899999999999999887 7777766654
No 144
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=67.07 E-value=7.5 Score=22.95 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=27.8
Q ss_pred CCCCcccHHHHHHHHHHc---------CCCCCHHHHHHhhhCCCccHHHH
Q 032169 19 NGDGLVSLEELNWVLERI---------GVHFTLEELEALVEKPSLCFDEF 59 (146)
Q Consensus 19 d~~G~i~~~e~~~~l~~l---------~~~~~~~~~~~l~~dg~i~~~ef 59 (146)
-.+|.+..+||..++... ....+..++.++..+|+|+-++|
T Consensus 26 ~~~Gkv~~ee~n~~~e~~p~~~~~lAk~~G~t~~~l~~~~~~Gkit~~~~ 75 (75)
T TIGR02675 26 LASGKLRGEEINSLLEALPGALQALAKAMGVTRGELRKMLSDGKLTADVI 75 (75)
T ss_pred HHcCcccHHHHHHHHHHhHHHHHHHHHHhCCCHHHHHHHHHCCCCccccC
Confidence 457999999999887652 12355566666667777776553
No 145
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.53 E-value=3.2 Score=35.95 Aligned_cols=62 Identities=21% Similarity=0.370 Sum_probs=50.2
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHH
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCD 64 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~ 64 (146)
+++.+...+..+|...|.+++|.|+..+....+... .++...+..++ +.|.+++.+|...+.
T Consensus 277 vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~--gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 277 VSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPF--GLSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred cChHHHHHHHHHHHhccccCCCcccccccccccccC--CCChhhhhhhhhhcchhccCcccccccchhhh
Confidence 356678888999999999999999999999888654 45566777777 788999998876553
No 146
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=65.45 E-value=29 Score=21.20 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=37.8
Q ss_pred CCHHHHHHhh-----hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCc
Q 032169 40 FTLEELEALV-----EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDG 114 (146)
Q Consensus 40 ~~~~~~~~l~-----~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G 114 (146)
++..+...++ ..--|.+.+|...+....+. .. +.....++ ..+|.-++|
T Consensus 4 ITK~eA~~FW~~~Fg~r~IVPW~~F~~~L~~~h~~-------------------~~----~~~~~aLk---~TiDlT~n~ 57 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFGKRTIVPWSEFRQALQKVHPI-------------------SS----GLEAMALK---STIDLTCND 57 (85)
T ss_dssp -SSHHHHHHHHHHHTT-SEEEHHHHHHHHHHHS---------------------SS----HHHHHHHH---HHH-TTSSS
T ss_pred eccHHHHHHHHHHCCCCeEeeHHHHHHHHHHhcCC-------------------Cc----hHHHHHHH---HHHhcccCC
Confidence 4555666666 23347888998888776554 10 01122222 357889999
Q ss_pred ceeHHHHHHHHHHcCC
Q 032169 115 FITSEELQSVLARLGL 130 (146)
Q Consensus 115 ~Is~~el~~~l~~~g~ 130 (146)
+||.=||--..+-++.
T Consensus 58 ~iS~FeFdvFtRlFqP 73 (85)
T PF02761_consen 58 YISNFEFDVFTRLFQP 73 (85)
T ss_dssp EEEHHHHHHHHHHT--
T ss_pred ccchhhhHHHHHHHhh
Confidence 9999998877776664
No 147
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=64.23 E-value=12 Score=26.30 Aligned_cols=36 Identities=19% Similarity=0.428 Sum_probs=24.0
Q ss_pred cccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 108 FDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 108 ~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
+..+.+|+++.+++.+.+..-+.++ |.+++++++.+
T Consensus 25 L~~d~~G~v~v~dLL~~~~~~~~~~--t~~~i~~vV~~ 60 (186)
T PF01885_consen 25 LVMDPDGWVSVDDLLRALRFKGLWV--TEEDIREVVET 60 (186)
T ss_dssp ----TT--EEHHHHHHHHHHT-TT----HHHHHHHHHH
T ss_pred CccCCCCCEeHHHHHHHHHHcCCCC--CHHHHHHHHhh
Confidence 3578999999999999999888777 99999998764
No 148
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=63.64 E-value=14 Score=21.22 Aligned_cols=22 Identities=18% Similarity=0.517 Sum_probs=19.9
Q ss_pred hccccCCCcceeHHHHHHHHHH
Q 032169 106 SVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 106 ~~~D~~~~G~Is~~el~~~l~~ 127 (146)
+.||...+.+||.+++.++...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 5789999999999999999876
No 149
>PRK00523 hypothetical protein; Provisional
Probab=63.26 E-value=12 Score=22.04 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=31.5
Q ss_pred HHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhhC
Q 032169 102 YKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLRV 146 (146)
Q Consensus 102 ~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~~ 146 (146)
++.|+.+= ..+=-|+.+.++.++..+|-+. |+..++.+.+++
T Consensus 27 rk~~~k~l-~~NPpine~mir~M~~QMGqKP--Sekki~Q~m~~m 68 (72)
T PRK00523 27 KKMFKKQI-RENPPITENMIRAMYMQMGRKP--SESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHH-HHCcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHH
Confidence 44444442 2334699999999999999988 999999987653
No 150
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=63.18 E-value=12 Score=21.71 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=11.9
Q ss_pred HHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 99 SDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 99 ~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
..+..+|..-| =.||.+|+..+|+.
T Consensus 17 ~~m~~if~l~~----~~vs~~el~a~lrk 41 (68)
T PF07308_consen 17 DDMIEIFALAG----FEVSKAELSAWLRK 41 (68)
T ss_pred HHHHHHHHHcC----CccCHHHHHHHHCC
Confidence 34444444443 23555555555554
No 151
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=61.86 E-value=17 Score=23.27 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=31.5
Q ss_pred HHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 102 YKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 102 ~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
..+|-..-..|+..+|.+++..+|+..|..+ ....+..++.
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGveV--e~~~~~lf~~ 44 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVEV--DDEKLNKVIS 44 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCc--cHHHHHHHHH
Confidence 3456666677888999999999999999877 6666665554
No 152
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=61.53 E-value=18 Score=25.32 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=29.2
Q ss_pred ccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 109 DVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 109 D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
-.|.+|++..+++.+.++.-+..+ |.+++++++.+
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~--t~~~l~~vV~~ 61 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWV--TRELLEAVVES 61 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCC--CHHHHHHHHHc
Confidence 467899999999999998766667 99999988753
No 153
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.83 E-value=14 Score=21.63 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=27.6
Q ss_pred CcceeHHHHHHHHHHcCCCCCCChhHHHhhhhhC
Q 032169 113 DGFITSEELQSVLARLGLWDEEKQPRLQKHDLRV 146 (146)
Q Consensus 113 ~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~~ 146 (146)
+=-|+.+-++.++..+|.+. |+..++.+.+++
T Consensus 36 NPpine~~iR~M~~qmGqKp--Se~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKP--SEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCc--hHHHHHHHHHHH
Confidence 34699999999999999988 999999987753
No 154
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=59.63 E-value=1.2e+02 Score=26.25 Aligned_cols=95 Identities=16% Similarity=0.250 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh-----hCCCccHHHHHHHHHHHhhhcCCCCCCchhh
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV-----EKPSLCFDEFLFFCDSIISNNNNNNPNAAAD 80 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~-----~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~ 80 (146)
...++.+|+..+.-+++.+...++..+-..++..+ ++..++ +.+.++.++++.++...-..
T Consensus 171 ~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~~~~ls~~~L~~Fl~~~q~e----------- 236 (746)
T KOG0169|consen 171 ESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHGKEYLSTDDLLRFLEEEQGE----------- 236 (746)
T ss_pred HHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCCCCccCHHHHHHHHHHhccc-----------
Confidence 45677888888888899999999999988877665 555555 57789999988888764221
Q ss_pred hhcccccccCCCCchhHHHHHHHhhhcc----ccCCCcceeHHHHHHHHHH
Q 032169 81 ASQNADEAVDDDSGDEEISDLYKAFSVF----DVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~----D~~~~G~Is~~el~~~l~~ 127 (146)
++........+.+.+ ...+.+.++.+.|.++|-+
T Consensus 237 -------------~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 237 -------------DGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred -------------ccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 012223333333333 2346677999999999865
No 155
>PLN02222 phosphoinositide phospholipase C 2
Probab=59.38 E-value=56 Score=27.33 Aligned_cols=59 Identities=20% Similarity=0.453 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHhh-------hCCCccHHHHHHHHHH
Q 032169 5 TANDLQRIFEKLDRNGDGLVSLEELNWVLERIGV--HFTLEELEALV-------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~--~~~~~~~~~l~-------~dg~i~~~ef~~~~~~ 65 (146)
...++..+|..+-. ++.++.++|..+|..... ..+.+.+..++ ..+.++++.|..++.+
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 34688999999864 479999999999987633 24566666666 4567999999998865
No 156
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=58.18 E-value=3.7 Score=29.29 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=23.6
Q ss_pred HHHHHHhhhccccCCCcceeHHHHHHHH
Q 032169 98 ISDLYKAFSVFDVNGDGFITSEELQSVL 125 (146)
Q Consensus 98 ~~~~~~~F~~~D~~~~G~Is~~el~~~l 125 (146)
..-..+.|...|.|++|+|+.+|+...+
T Consensus 221 e~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 221 EHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred HhhchhhhhcccCCCCCceeHHHhhccc
Confidence 4556788999999999999999987554
No 157
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.96 E-value=26 Score=24.51 Aligned_cols=109 Identities=13% Similarity=0.146 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh---------hCCCccHHHHHHHHHHHhhhcCCCCC
Q 032169 5 TANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV---------EKPSLCFDEFLFFCDSIISNNNNNNP 75 (146)
Q Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~---------~dg~i~~~ef~~~~~~~~~~~~~~~~ 75 (146)
.+..++++|.-||++.=-..+..++..+|..-++--...++..++ ..+ +|..|+=.+....+. ...
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~e--sf~~ylW~fv~~~Pi---~~~ 125 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQN--DLVEFLWSFVNHQPQ---PRQ 125 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHhccCCCCc---cCC
Confidence 367789999999999888899999999998777766677777776 222 565554322110000 000
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCC
Q 032169 76 NAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLGL 130 (146)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~ 130 (146)
+... ... + ........+.+.+-+.|-.++.+--...+|..+|.
T Consensus 126 ~~~~----~~~--p------~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 126 RPTD----SEI--P------SSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred cccc----ccC--C------CCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 0000 000 0 12223445555666667777888878888887774
No 158
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=57.92 E-value=11 Score=34.95 Aligned_cols=38 Identities=16% Similarity=0.380 Sum_probs=30.3
Q ss_pred HhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhh
Q 032169 103 KAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHD 143 (146)
Q Consensus 103 ~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~ 143 (146)
..|+-||.||.|.|+..+|++++..-.+. |+.+++.++
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k~y---tqse~dfll 4098 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHKHY---TQSEIDFLL 4098 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccccc---hhHHHHHHH
Confidence 45888999999999999999998765543 677776654
No 159
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=57.43 E-value=27 Score=22.62 Aligned_cols=76 Identities=24% Similarity=0.269 Sum_probs=41.8
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCC
Q 032169 20 GDGLVSLEELNWVLERI--GVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDD 91 (146)
Q Consensus 20 ~~G~i~~~e~~~~l~~l--~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (146)
-||.++..|...+...+ ...++..+...+. .....++.+|+..+...+.. .
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~-- 94 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSP-------------------E-- 94 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--H-------------------H--
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhch-------------------H--
Confidence 47899999988777665 2223334444443 33367777777665442222 1
Q ss_pred CCchhHHHHHHHhhhccccCCCcceeHHHHH
Q 032169 92 DSGDEEISDLYKAFSVFDVNGDGFITSEELQ 122 (146)
Q Consensus 92 ~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~ 122 (146)
.....+..++...-.| |.++..|-.
T Consensus 95 ----~r~~ll~~l~~ia~AD--G~~~~~E~~ 119 (140)
T PF05099_consen 95 ----EREDLLRMLIAIAYAD--GEISPEEQE 119 (140)
T ss_dssp ----HHHHHHHHHHHHCTCT--TC-SCCHHH
T ss_pred ----HHHHHHHHHHHHHhcC--CCCCHHHHH
Confidence 4456667778877665 556655543
No 160
>PLN02230 phosphoinositide phospholipase C 4
Probab=56.64 E-value=63 Score=27.13 Aligned_cols=60 Identities=28% Similarity=0.452 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHhh-------------hCCCccHHHHHHHHHH
Q 032169 5 TANDLQRIFEKLDRNGDGLVSLEELNWVLERIGV---HFTLEELEALV-------------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~---~~~~~~~~~l~-------------~dg~i~~~ef~~~~~~ 65 (146)
...+++.+|..+-.++ +.++.++|..+|..-.. ..+.+++..++ ..+.++++.|..++.+
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4678999999996444 89999999999987642 23445555555 1245999999998865
No 161
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=54.98 E-value=16 Score=21.89 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh
Q 032169 3 PLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV 49 (146)
Q Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (146)
......++++...- ...|+||..++..+|.. ..++++.+..++
T Consensus 3 ~~~~~~i~~Li~~g--K~~G~lT~~eI~~~L~~--~~~~~e~id~i~ 45 (82)
T PF03979_consen 3 EQYEEAIKKLIEKG--KKKGYLTYDEINDALPE--DDLDPEQIDEIY 45 (82)
T ss_dssp -HHHHHHHHHHHHH--HHHSS-BHHHHHHH-S---S---HHHHHHHH
T ss_pred chhHHHHHHHHHHH--hhcCcCCHHHHHHHcCc--cCCCHHHHHHHH
Confidence 34556666666553 34789999999999973 347778888876
No 162
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=54.87 E-value=35 Score=29.81 Aligned_cols=67 Identities=18% Similarity=0.403 Sum_probs=48.3
Q ss_pred hhhHHH-HHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHH-HHHhh-----hCCCccHHHHHHHHHHHhhh
Q 032169 3 PLTAND-LQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEE-LEALV-----EKPSLCFDEFLFFCDSIISN 69 (146)
Q Consensus 3 ~~~~~~-l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~-~~~l~-----~dg~i~~~ef~~~~~~~~~~ 69 (146)
+.++.. +++.|-..|...-..|+..+++..|...++.++... +.+-+ ..+.++|++|-.++...+-.
T Consensus 139 p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~~k~dlsf~~f~~ly~~lmfs 212 (1267)
T KOG1264|consen 139 PLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGARKDDLSFEQFHLLYKKLMFS 212 (1267)
T ss_pred hHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhhccccccHHHHHHHHHHHhhc
Confidence 344443 555666778777778999999999988777665533 32444 78889999999998876654
No 163
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=54.85 E-value=50 Score=20.59 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 118 SEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 118 ~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
...+..+|..++... ..+.|+.++..
T Consensus 69 ~~~Li~aLr~~~l~~--~Ad~I~~~l~~ 94 (97)
T cd08316 69 YRTLIKTLRKAKLCT--KADKIQDIIEA 94 (97)
T ss_pred HHHHHHHHHHccchh--HHHHHHHHHHh
Confidence 577888888888777 78888877653
No 164
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.31 E-value=61 Score=28.22 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=43.4
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHH
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCD 64 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~ 64 (146)
|+..+..-.+.|..+- -+.|+|+-.+-+.++-..|++ ..-+..++ .||+++..||.-.++
T Consensus 11 T~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~LP--~~VLaqIWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 11 TDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSGLP--TPVLAQIWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred chHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcCCC--hHHHHHHHHhhhcCccccchHHHHHHHHH
Confidence 4555666666666664 457999999999988655544 35566666 899999999987664
No 165
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=54.10 E-value=56 Score=28.89 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHc----------CCCCCHHHHHHhh----------hCCCccHHHHHHHHHH
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERI----------GVHFTLEELEALV----------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l----------~~~~~~~~~~~l~----------~dg~i~~~ef~~~~~~ 65 (146)
+.++.++|..+-.++.-+++..+|..++..- -.+..+..+..++ ..|.++.+.|+..+..
T Consensus 220 R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 220 RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 5788999999988888999999999998752 2346678888887 6889999999987754
No 166
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.96 E-value=28 Score=18.53 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=21.1
Q ss_pred CCccee-HHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 112 GDGFIT-SEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 112 ~~G~Is-~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
..|.|+ ..++...|...|+.+ +++.++.+++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~i--s~~l~~~~L~~ 46 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRI--SPKLIEEILRR 46 (48)
T ss_pred HcCChhhHHHHHHHHHHcCccc--CHHHHHHHHHH
Confidence 346665 444555555668888 88888887765
No 167
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=53.77 E-value=14 Score=26.01 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh
Q 032169 5 TANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV 49 (146)
Q Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (146)
.++.++++|..||+++=-..+.+++.++|...|+--...+|...+
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 367799999999999999999999999999888877777777777
No 168
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=53.31 E-value=17 Score=20.62 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=22.0
Q ss_pred ceeHHHHHHHHHHcCCCCCCChhHHHhhh
Q 032169 115 FITSEELQSVLARLGLWDEEKQPRLQKHD 143 (146)
Q Consensus 115 ~Is~~el~~~l~~~g~~~~~~~~~~~~l~ 143 (146)
.|+.++|..+|+.....+ +.++++...
T Consensus 29 ~it~~DF~~Al~~~kpSV--s~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSV--SQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS---HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 589999999999998888 888887653
No 169
>PLN02228 Phosphoinositide phospholipase C
Probab=52.69 E-value=80 Score=26.34 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHhh----------hCCCccHHHHHHHHHHH
Q 032169 4 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGV--HFTLEELEALV----------EKPSLCFDEFLFFCDSI 66 (146)
Q Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~--~~~~~~~~~l~----------~dg~i~~~ef~~~~~~~ 66 (146)
+...++..+|..+-. ++.++.++|..+|..... ..+.+.+..++ ..|.++++.|..++.+.
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 346789999998864 368999999999987632 23445566666 23579999999988654
No 170
>PRK01844 hypothetical protein; Provisional
Probab=52.36 E-value=21 Score=21.07 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=30.8
Q ss_pred HHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 102 YKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 102 ~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
++.|+.+= ..+=-|+.+.++.++..+|-+. |+..++.+.++
T Consensus 26 rk~~~k~l-k~NPpine~mir~Mm~QMGqkP--Sekki~Q~m~~ 66 (72)
T PRK01844 26 RKYMMNYL-QKNPPINEQMLKMMMMQMGQKP--SQKKINQMMSA 66 (72)
T ss_pred HHHHHHHH-HHCCCCCHHHHHHHHHHhCCCc--cHHHHHHHHHH
Confidence 44444442 2334699999999999999988 99999988765
No 171
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=51.18 E-value=25 Score=27.15 Aligned_cols=32 Identities=25% Similarity=0.213 Sum_probs=27.9
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
....-.+..|+..|.|+|-.||.+|++.-|..
T Consensus 367 ~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 367 KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred cHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 45667789999999999999999999988854
No 172
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=48.65 E-value=71 Score=20.55 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh-hCCCccHHHHHHH
Q 032169 8 DLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV-EKPSLCFDEFLFF 62 (146)
Q Consensus 8 ~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~-~dg~i~~~ef~~~ 62 (146)
++-.+|.++-..++..+|.+++..+|+..|.......+..++ .=.-.+.++.+.-
T Consensus 4 kyvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~GKdI~ELIa~ 59 (112)
T PTZ00373 4 KYVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEGKTPHELIAA 59 (112)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHHHH
Confidence 345567777777788899999999999999999998888888 2222477777763
No 173
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=48.54 E-value=40 Score=17.63 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHhCC-C-CCCcccHHHHHHHHHH
Q 032169 5 TANDLQRIFEKLDR-N-GDGLVSLEELNWVLER 35 (146)
Q Consensus 5 ~~~~l~~~F~~~D~-d-~~G~i~~~e~~~~l~~ 35 (146)
.+..+..+|..|-. + ....++..||+..|+.
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 35567788888853 2 3578999999999864
No 174
>PHA03155 hypothetical protein; Provisional
Probab=48.48 E-value=72 Score=20.57 Aligned_cols=91 Identities=12% Similarity=0.029 Sum_probs=55.5
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhH
Q 032169 24 VSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEE 97 (146)
Q Consensus 24 i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (146)
.+.+|+..-|..|. +-+..+..-+ .++.++..+=-.++...... ..
T Consensus 8 ~tvEeLaaeL~kL~--~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~--------------------------Lt 59 (115)
T PHA03155 8 ADVEELEKELQKLK--IENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNK--------------------------LT 59 (115)
T ss_pred CCHHHHHHHHHHHH--HHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHH--------------------------HH
Confidence 56666666665542 2333344433 45567766655555443332 34
Q ss_pred HHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhh
Q 032169 98 ISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKH 142 (146)
Q Consensus 98 ~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l 142 (146)
....+.+-.....+-.+.+|.+|+..++..+.+.+.++-++.+..
T Consensus 60 ~~A~~KIe~kVrk~~~~~vTk~q~~~al~~lt~RidvSmde~~~~ 104 (115)
T PHA03155 60 KKAEEKIRERVLKDLLPLVSKNQCMEAIADIKYRIDVSIDESQDL 104 (115)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHhcCeeeEEecccchhcc
Confidence 445566666777777888999999999999876654465555443
No 175
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=47.70 E-value=23 Score=29.48 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=36.0
Q ss_pred HHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 98 ISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 98 ~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
....+.-|..+|.++.|+++.+.+.++|+..+.+. +++.+.++++
T Consensus 592 ~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~--d~~~~~~~l~ 636 (680)
T KOG0042|consen 592 FLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGW--DEDRLHEELQ 636 (680)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence 34455679999999999999999999999998666 7766666554
No 176
>PF13551 HTH_29: Winged helix-turn helix
Probab=47.60 E-value=64 Score=19.70 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHhCCCCCCcccHHHHHHHH--HHcCCCCCHHHHHH
Q 032169 3 PLTANDLQRIFEKLDRNGDGLVSLEELNWVL--ERIGVHFTLEELEA 47 (146)
Q Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l--~~l~~~~~~~~~~~ 47 (146)
+.+.+.+.+.+...-.++.+..+...+...+ +..+..++...+..
T Consensus 60 ~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r 106 (112)
T PF13551_consen 60 EEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRR 106 (112)
T ss_pred HHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHH
Confidence 3334444444443322222344455554433 22244444444443
No 177
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=47.34 E-value=28 Score=26.75 Aligned_cols=26 Identities=31% Similarity=0.727 Sum_probs=22.9
Q ss_pred HHhhhccccCCCcceeHHHHHHHHHH
Q 032169 102 YKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 102 ~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
+..|...|.|++|+++-.|+..++..
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtk 272 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTK 272 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHH
Confidence 45788899999999999999999865
No 178
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=47.28 E-value=70 Score=20.44 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh-hCCCccHHHHHHHHHHH
Q 032169 9 LQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV-EKPSLCFDEFLFFCDSI 66 (146)
Q Consensus 9 l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~-~dg~i~~~ef~~~~~~~ 66 (146)
+-.+|.++-..++..+|.+++..+|+..|.......+..++ .=.-.+.++.+......
T Consensus 3 yvaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~GKdi~eLIa~g~~k 61 (109)
T cd05833 3 YVAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEGKDVEELIAAGKEK 61 (109)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHHHHhHhh
Confidence 34566677777888899999999999999999988888877 21225778877765544
No 179
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=46.80 E-value=12 Score=26.14 Aligned_cols=44 Identities=11% Similarity=0.274 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV 49 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (146)
+..++++|.-||++.=-..+.+++..++..-++--+..++..++
T Consensus 48 r~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi 91 (179)
T PF03352_consen 48 REAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVI 91 (179)
T ss_dssp HHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHH
Confidence 57789999999988877788889998888777666777888777
No 180
>PLN02228 Phosphoinositide phospholipase C
Probab=46.27 E-value=77 Score=26.44 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=43.1
Q ss_pred CCCHHHHHHhh----hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccC---
Q 032169 39 HFTLEELEALV----EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVN--- 111 (146)
Q Consensus 39 ~~~~~~~~~l~----~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~--- 111 (146)
..++.++..+| +++.++.++|..++...... . ....+.+..+|..|...
T Consensus 20 ~~~~~ei~~if~~~s~~~~~t~~~~~~FL~~~Q~~-------------------~-----~~~~~~~~~i~~~~~~~~~~ 75 (567)
T PLN02228 20 REPPVSIKRLFEAYSRNGKMSFDELLRFVSEVQGE-------------------R-----HAGLDYVQDIFHSVKHHNVF 75 (567)
T ss_pred CCCcHHHHHHHHHhcCCCccCHHHHHHHHHHhcCC-------------------c-----cCCHHHHHHHHHHhccchhh
Confidence 44667888888 45689999999888654322 0 02234456666666432
Q ss_pred -CCcceeHHHHHHHHHH
Q 032169 112 -GDGFITSEELQSVLAR 127 (146)
Q Consensus 112 -~~G~Is~~el~~~l~~ 127 (146)
..|.++.+.|..+|..
T Consensus 76 ~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 76 HHHGLVHLNAFYRYLFS 92 (567)
T ss_pred cccCccCHHHHHHHhcC
Confidence 3478999999998854
No 181
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=44.91 E-value=45 Score=21.48 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=28.9
Q ss_pred HhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 103 KAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 103 ~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
.+|-+.-.-++-.+|.+++..+|...|..+ ....+..++.
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaGvev--d~~~~~~f~~ 44 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVGADA--DDDRIELLLS 44 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCcc--cHHHHHHHHH
Confidence 344444456677899999999999999877 6666655543
No 182
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=43.94 E-value=42 Score=18.91 Aligned_cols=13 Identities=54% Similarity=0.552 Sum_probs=5.4
Q ss_pred ceeHHHHHHHHHH
Q 032169 115 FITSEELQSVLAR 127 (146)
Q Consensus 115 ~Is~~el~~~l~~ 127 (146)
.+|.+|++.+|..
T Consensus 32 ~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 32 DISLEELQEFLDR 44 (60)
T ss_dssp T--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3555555555543
No 183
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=43.89 E-value=78 Score=25.51 Aligned_cols=60 Identities=10% Similarity=0.199 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHhh--hCCCccHHHHHHHHHH
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLER-IGVHFTLEELEALV--EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-l~~~~~~~~~~~l~--~dg~i~~~ef~~~~~~ 65 (146)
.++++.+.+.+|.|.+|.|+.+|=-.+|+. +...-+...-.+-| .|..|+.++....+..
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHGDDKHITVEDLWEAWKE 129 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccCCccceeHHHHHHHHHh
Confidence 577888999999999999999988777764 33333333333344 6777888888877653
No 184
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=43.84 E-value=59 Score=20.61 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=23.9
Q ss_pred eeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 116 ITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 116 Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
||.+++..+|...|..+ +++.+..++..
T Consensus 17 ~ta~~I~~IL~aaGveV--e~~~~~~~~~a 44 (105)
T cd04411 17 LTEDKIKELLSAAGAEI--EPERVKLFLSA 44 (105)
T ss_pred CCHHHHHHHHHHcCCCc--CHHHHHHHHHH
Confidence 99999999999999888 88777776653
No 185
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=43.51 E-value=27 Score=16.98 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.0
Q ss_pred CCcceeHHHHHHHHHHc
Q 032169 112 GDGFITSEELQSVLARL 128 (146)
Q Consensus 112 ~~G~Is~~el~~~l~~~ 128 (146)
+.|.|+.+|+..+....
T Consensus 1 ~~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 1 SSGTISKEEYLDMASRV 17 (33)
T ss_pred CCceecHHHHHHHHHHH
Confidence 36889999999998764
No 186
>PLN02230 phosphoinositide phospholipase C 4
Probab=43.34 E-value=43 Score=28.09 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=35.3
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcC-CCCCCChhHHHhhhh
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLG-LWDEEKQPRLQKHDL 144 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g-~~~~~~~~~~~~l~~ 144 (146)
.+..++..+|..|-.++ +.++.++|.++|...+ .....+.++++.++.
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~ 74 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVD 74 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHH
Confidence 45678999999995444 8999999999999976 332225666666654
No 187
>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase, monomeric form. This family is of biopterin and metal-dependent hydroxylases is related to a family of longer, multimeric aromatic amino acid hydroxylases that have additional N-terminal regulatory sequences. These include tyrosine 3-monooxygenase, phenylalanine-4-hydroxylase, and tryptophan 5-monoxygenase.
Probab=43.10 E-value=1.4e+02 Score=22.19 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=45.6
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCC----CCHHHHHHhh----------hCCCccHHHHHHHHHH
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVH----FTLEELEALV----------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~----~~~~~~~~l~----------~dg~i~~~ef~~~~~~ 65 (146)
|+.+.+-++.+|+..-.--.|+-. .++...+..+|++ +.-+++...+ -.|.|+..+|...+..
T Consensus 12 T~~e~~~W~~l~~r~~~~~~~~Ac-~~yl~gl~~lgl~~d~IPql~~vn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~ 88 (248)
T TIGR01267 12 SEEEHAVWNTLITRQLKLIEGRAC-QEYLDGIEQLGLPHDRIPDFDEINRKLQATTGWRIAAVPGLIPFQTFFEHLAN 88 (248)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccc-HHHHHHHHHcCCCCCCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhc
Confidence 566777788888776544444444 4888888888764 4447788777 6899999999998763
No 188
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.99 E-value=83 Score=27.64 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=42.6
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHH
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCD 64 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~ 64 (146)
+.-++.+...+|..+.+. +|.++-...+-+|..- .+..+.+..++ .+|.+++.||...+.
T Consensus 124 ~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 124 TPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMH 189 (847)
T ss_pred CHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhh
Confidence 344567788888888766 7888888887777543 34445565666 788899999877654
No 189
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=42.81 E-value=32 Score=22.00 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=14.7
Q ss_pred eHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 117 TSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 117 s~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
+.+|++.++......+ ++++++.++.
T Consensus 80 ~~dElrai~~~~~~~~--~~e~l~~ILd 105 (112)
T PRK14981 80 TRDELRAIFAKERYTL--SPEELDEILD 105 (112)
T ss_pred CHHHHHHHHHHhccCC--CHHHHHHHHH
Confidence 3555666665554444 6666666553
No 190
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=42.61 E-value=1.1e+02 Score=21.16 Aligned_cols=104 Identities=13% Similarity=0.261 Sum_probs=68.6
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCH-HHHHHhh-------------hC----------------
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTL-EELEALV-------------EK---------------- 51 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~-~~~~~l~-------------~d---------------- 51 (146)
.++-..++-.+|..+-.+ .+-+...++..+++.|.+|.-. .++.+-+ -+
T Consensus 9 ~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L~IP~cfT~DI~~cidyyY~~i~~~~~~i~~tn~kq~it~~mi~a~ 87 (170)
T PF08730_consen 9 PPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDLQIPKCFTKDINECIDYYYKFIRSKDVCIEGTNPKQDITLQMIHAY 87 (170)
T ss_pred ChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHcCCChHHHHhHHHHHHHHHHhcccCceeecCcchhHHHHHHHHHHh
Confidence 345567888899888543 6779999999999998776433 2222221 12
Q ss_pred -------------CCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhcccc-CCC---c
Q 032169 52 -------------PSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDV-NGD---G 114 (146)
Q Consensus 52 -------------g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~-~~~---G 114 (146)
.-|+|+-.+....+++.. + .+.+.+...|+.|=. -|+ +
T Consensus 88 t~s~~~~~~~di~DIVDfdKLl~~t~~LL~F-------------------m------dN~~~Id~~W~L~V~~sgr~~~~ 142 (170)
T PF08730_consen 88 TISSSIKNPDDIIDIVDFDKLLRNTYRLLIF-------------------M------DNEEHIDESWKLFVTASGRDTQF 142 (170)
T ss_pred hccccccccccccceeeHHHHHHHHHHHHhc-------------------c------chHHHHHHHHHHHHHhcCCCCCC
Confidence 236677777776666666 4 667778888888722 111 1
Q ss_pred --------ceeHHHHHHHHHHcCCC
Q 032169 115 --------FITSEELQSVLARLGLW 131 (146)
Q Consensus 115 --------~Is~~el~~~l~~~g~~ 131 (146)
.++..+++++-..+|..
T Consensus 143 ~~v~l~~h~LslkDLqkik~~l~lD 167 (170)
T PF08730_consen 143 PNVELKNHVLSLKDLQKIKNSLNLD 167 (170)
T ss_pred cchhhhhceechHHHHHHHHHhCCC
Confidence 28888888888887753
No 191
>PRK11913 phhA phenylalanine 4-monooxygenase; Reviewed
Probab=41.47 E-value=1.5e+02 Score=22.29 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=45.1
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCC----CCHHHHHHhh----------hCCCccHHHHHHHHHH
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVH----FTLEELEALV----------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~----~~~~~~~~l~----------~dg~i~~~ef~~~~~~ 65 (146)
|+.+.+-++.+|+..-.--.|+-. .++...+..+|++ +.-+++...+ -.|.|+..+|...+..
T Consensus 28 T~~e~~~W~~l~~r~~~~~~~~Ac-~~yl~gl~~L~l~~d~IPql~~in~~L~~~TGw~~~pV~Glip~~~Ff~~LA~ 104 (275)
T PRK11913 28 TAEEHAIWQTLYERQLALLPGRAC-DEFLEGLEALGLPKDRIPQLDEINRVLQAATGWQVVPVPGLIPFDVFFELLAN 104 (275)
T ss_pred CHHHHHHHHHHHHHHHHHhccccC-HHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcCCEEEecCccCCHHHHHHHHhc
Confidence 566677777777766544444444 4788888888764 4457777777 6889999999998763
No 192
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=41.43 E-value=61 Score=19.02 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=22.1
Q ss_pred eeHHHHHHHHHHcCCCCCCChhHHHhhh
Q 032169 116 ITSEELQSVLARLGLWDEEKQPRLQKHD 143 (146)
Q Consensus 116 Is~~el~~~l~~~g~~~~~~~~~~~~l~ 143 (146)
+|..+|..+|...|+++..+.++++.=+
T Consensus 46 ~s~~eF~~~L~~~gI~~~~~~eel~~dl 73 (76)
T PF03683_consen 46 MSRWEFLELLKERGIPINYDEEELEEDL 73 (76)
T ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 5888999999999988766777776533
No 193
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=41.27 E-value=25 Score=32.85 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=34.2
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCC
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWD 132 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~ 132 (146)
.+.+...++|..||.+..|.|...++..+++.+..++
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL 1450 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPL 1450 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCcc
Confidence 6788999999999999999999999999999987665
No 194
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=41.26 E-value=34 Score=22.92 Aligned_cols=14 Identities=50% Similarity=0.890 Sum_probs=7.4
Q ss_pred eeHHHHHHHHHHcC
Q 032169 116 ITSEELQSVLARLG 129 (146)
Q Consensus 116 Is~~el~~~l~~~g 129 (146)
+|-+|...+|..+|
T Consensus 43 lTd~E~~aVL~~I~ 56 (139)
T PF07128_consen 43 LTDDEARAVLARIG 56 (139)
T ss_pred CCHHHHHHHHHHHh
Confidence 45555555555543
No 195
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=40.93 E-value=1e+02 Score=23.67 Aligned_cols=48 Identities=17% Similarity=0.103 Sum_probs=34.9
Q ss_pred CcccHHHHHHHHHHc-CCCCCHHHHHHhh---hCCCccHHHHHHHHHHHhhh
Q 032169 22 GLVSLEELNWVLERI-GVHFTLEELEALV---EKPSLCFDEFLFFCDSIISN 69 (146)
Q Consensus 22 G~i~~~e~~~~l~~l-~~~~~~~~~~~l~---~dg~i~~~ef~~~~~~~~~~ 69 (146)
..++.+|...++..+ .-..++.++..++ .-...+.+|...++..+...
T Consensus 14 ~~Lt~~Ea~~~~~~il~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~ 65 (339)
T PRK00188 14 EDLSEEEAEELMDAIMSGEATPAQIAAFLTALRVKGETVDEIAGAARAMREH 65 (339)
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 468999999988876 4467778887777 33445788888877766655
No 196
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=40.93 E-value=40 Score=21.49 Aligned_cols=22 Identities=14% Similarity=0.534 Sum_probs=16.7
Q ss_pred hccccCCCcceeHHHHHHHHHH
Q 032169 106 SVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 106 ~~~D~~~~G~Is~~el~~~l~~ 127 (146)
+.||...+.+||.+++.++...
T Consensus 10 RLYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cccCCCccceeeHHHHHHHHHC
Confidence 4678888888888888877754
No 197
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=40.63 E-value=1.8e+02 Score=23.39 Aligned_cols=80 Identities=20% Similarity=0.211 Sum_probs=53.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHhh------hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCc
Q 032169 21 DGLVSLEELNWVLERIGVHFTLEELEALV------EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSG 94 (146)
Q Consensus 21 ~G~i~~~e~~~~l~~l~~~~~~~~~~~l~------~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (146)
.-.+++..|..+|+....-.+.-+..++- .++.|+-=||-.+-..+
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLF---------------------------- 239 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLF---------------------------- 239 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhh----------------------------
Confidence 45688888888888763322223333333 66777766665544433
Q ss_pred hhHHHHHHHhhhccccCCCc---ceeHHHHHHHHHHcC
Q 032169 95 DEEISDLYKAFSVFDVNGDG---FITSEELQSVLARLG 129 (146)
Q Consensus 95 ~~~~~~~~~~F~~~D~~~~G---~Is~~el~~~l~~~g 129 (146)
.++..+.+-|+.+-..+-| ++|++|++.-|..+-
T Consensus 240 -qPw~tllkNWq~LavtHPGYmAFLTYDEVk~RLqk~~ 276 (563)
T KOG1785|consen 240 -QPWKTLLKNWQTLAVTHPGYMAFLTYDEVKARLQKYI 276 (563)
T ss_pred -ccHHHHHHhhhhhhccCCceeEEeeHHHHHHHHHHHh
Confidence 4456677778888888888 489999998887753
No 198
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=39.74 E-value=38 Score=17.87 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=19.0
Q ss_pred eHHHHHHHHHHcCCCCCCChhHHH
Q 032169 117 TSEELQSVLARLGLWDEEKQPRLQ 140 (146)
Q Consensus 117 s~~el~~~l~~~g~~~~~~~~~~~ 140 (146)
+.+++..+.+..|+.+ |.++++
T Consensus 28 ~~~e~~~lA~~~Gy~f--t~~el~ 49 (49)
T PF07862_consen 28 NPEEVVALAREAGYDF--TEEELE 49 (49)
T ss_pred CHHHHHHHHHHcCCCC--CHHHhC
Confidence 7899999999999999 887763
No 199
>PHA02943 hypothetical protein; Provisional
Probab=39.60 E-value=1.2e+02 Score=20.86 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=28.1
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV 49 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (146)
||+.-..++..+...+ +.|.-+..|+...+. .|..++..++
T Consensus 5 ~sd~v~~R~~eILE~L---k~G~~TtseIAkaLG-----lS~~qa~~~L 45 (165)
T PHA02943 5 MSDTVHTRMIKTLRLL---ADGCKTTSRIANKLG-----VSHSMARNAL 45 (165)
T ss_pred hhHHHHHHHHHHHHHH---hcCCccHHHHHHHHC-----CCHHHHHHHH
Confidence 3455566777777777 678888888887763 5666666655
No 200
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=38.78 E-value=72 Score=20.32 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=23.6
Q ss_pred ceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 115 FITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 115 ~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
.||.+.+..+|...|..+ .+..+..++.
T Consensus 16 ~it~e~I~~IL~AAGveV--ee~~~k~~v~ 43 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEV--DEARVKALVA 43 (106)
T ss_pred CCCHHHHHHHHHHcCCCc--cHHHHHHHHH
Confidence 799999999999999887 7777766654
No 201
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=38.61 E-value=68 Score=18.02 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=21.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHhh
Q 032169 21 DGLVSLEELNWVLERIGVHFTLEELEALV 49 (146)
Q Consensus 21 ~G~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (146)
+-.+|.+|+...+..++-.++..++-.++
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW 35 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIW 35 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 34577788888888887777777776666
No 202
>PF14277 DUF4364: Domain of unknown function (DUF4364)
Probab=38.18 E-value=1.2e+02 Score=20.79 Aligned_cols=40 Identities=8% Similarity=0.213 Sum_probs=33.3
Q ss_pred HHHHHHcCCCCCHHHHHHhh-hCCCccHHHHHHHHHHHhhh
Q 032169 30 NWVLERIGVHFTLEELEALV-EKPSLCFDEFLFFCDSIISN 69 (146)
Q Consensus 30 ~~~l~~l~~~~~~~~~~~l~-~dg~i~~~ef~~~~~~~~~~ 69 (146)
.-+|..++.|+|..++..++ ..|.++|=.+-+++..+...
T Consensus 6 LYiL~~v~~pltn~qit~~iL~~~~~nYF~lqq~l~eL~es 46 (163)
T PF14277_consen 6 LYILKKVKFPLTNSQITEFILENEYTNYFTLQQALSELVES 46 (163)
T ss_pred hHHHHhCCCCCCHHHHHHHHHhcCcccHHHHHHHHHHHHHC
Confidence 34678889999999999999 88999998888888766554
No 203
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=38.07 E-value=57 Score=20.60 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=27.7
Q ss_pred HhhhccccCCCcceeHH----HHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 103 KAFSVFDVNGDGFITSE----ELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 103 ~~F~~~D~~~~G~Is~~----el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
.+-+.+...++|.--.+ -+...|...|+++ |+++++.+|++
T Consensus 55 aveq~~~~~~~G~~K~~~A~~~v~~~L~~~gi~~--t~~~i~~~IEa 99 (108)
T PF09682_consen 55 AVEQVAKEGGKGEEKKAEAVQYVKERLKKKGIKV--TDEQIEGAIEA 99 (108)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Confidence 33444444446655555 4556677789877 99999998875
No 204
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.78 E-value=46 Score=21.47 Aligned_cols=27 Identities=30% Similarity=0.230 Sum_probs=23.0
Q ss_pred eeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 116 ITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 116 Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
-|.+|++.++..-+..+ |+++++.++.
T Consensus 80 ~t~~ElRsIla~e~~~~--s~E~l~~Ild 106 (114)
T COG1460 80 RTPDELRSILAKERVML--SDEELDKILD 106 (114)
T ss_pred CCHHHHHHHHHHccCCC--CHHHHHHHHH
Confidence 36889999999999888 9999998764
No 205
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=37.72 E-value=65 Score=22.52 Aligned_cols=33 Identities=30% Similarity=0.305 Sum_probs=28.3
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh
Q 032169 17 DRNGDGLVSLEELNWVLERIGVHFTLEELEALV 49 (146)
Q Consensus 17 D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (146)
..|.+|+++.+++...++.-+...+.+++.+++
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV 59 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVV 59 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHH
Confidence 457899999999999987656678999999999
No 206
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=37.59 E-value=68 Score=17.12 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=30.0
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV 49 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (146)
+|+.+...|...|.. +.+.+..+...+...+| ++...+..-|
T Consensus 7 ~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF 48 (57)
T PF00046_consen 7 FTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWF 48 (57)
T ss_dssp SSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCH
Confidence 466778888888874 67788888888887775 4556655443
No 207
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=37.56 E-value=1.1e+02 Score=19.65 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=38.9
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh--hCCCccHHHHHH
Q 032169 10 QRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV--EKPSLCFDEFLF 61 (146)
Q Consensus 10 ~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~--~dg~i~~~ef~~ 61 (146)
-.+|.++-..++..++.+++..+|+..|.......+..++ -.| -+.++.+.
T Consensus 4 vaAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-K~i~eLIa 56 (113)
T PLN00138 4 VAAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-KDITELIA 56 (113)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-CCHHHHHH
Confidence 3456666566777899999999999999999888888877 222 46777664
No 208
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=37.55 E-value=67 Score=17.04 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=29.8
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV 49 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (146)
+..+...|...|.. +.+.+..+...+...+| ++...+..-|
T Consensus 8 ~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF 48 (59)
T cd00086 8 TPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWF 48 (59)
T ss_pred CHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHH
Confidence 45667788888876 56788888888888776 5556666554
No 209
>PLN02223 phosphoinositide phospholipase C
Probab=36.89 E-value=2e+02 Score=23.91 Aligned_cols=60 Identities=18% Similarity=0.065 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc----C-CCCCHHHHHHhh--------------hCCCccHHHHHHHHHH
Q 032169 5 TANDLQRIFEKLDRNGDGLVSLEELNWVLERI----G-VHFTLEELEALV--------------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l----~-~~~~~~~~~~l~--------------~dg~i~~~ef~~~~~~ 65 (146)
.-.+++.+|..+- .+.|.++...+.+.|.-+ | ...+.++.+.++ ..+.++++.|..++.+
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 3567889999884 677999999999998433 2 245666666666 1255999999998865
No 210
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=36.68 E-value=54 Score=22.99 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=22.4
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh
Q 032169 17 DRNGDGLVSLEELNWVLERIGVHFTLEELEALV 49 (146)
Q Consensus 17 D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (146)
..|.+|+++.+++...+..-+...+.+++.+++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV 58 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVV 58 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 468889999999999998767778889999988
No 211
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=36.10 E-value=54 Score=20.19 Aligned_cols=32 Identities=25% Similarity=0.178 Sum_probs=6.1
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
.-...+..|...-...|++.|+.++|.-+++.
T Consensus 35 ~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~ 66 (93)
T PF02269_consen 35 YIIELCQEAMEVAQRRGSKKIKVEDLLFLLRK 66 (93)
T ss_dssp HHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHHHHhccccCcCcHHHHHHHHhc
Confidence 44455566666666778888888888887765
No 212
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=36.09 E-value=72 Score=20.40 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=28.4
Q ss_pred hhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 104 AFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 104 ~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
++-.+..-+. -|+.+.+..++...|..+ .+..+..++..
T Consensus 6 a~llL~~agk-ei~e~~l~~vl~aaGvev--e~~r~k~lvaa 44 (109)
T COG2058 6 AYLLLHLAGK-EITEDNLKSVLEAAGVEV--EEARAKALVAA 44 (109)
T ss_pred HHHHHHHccC-cCCHHHHHHHHHHcCCCc--cHHHHHHHHHH
Confidence 3344444343 899999999999999888 77777766643
No 213
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=36.01 E-value=42 Score=21.75 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=18.4
Q ss_pred CCHHHHHHhh------hCCCccHHHHHHHHHH
Q 032169 40 FTLEELEALV------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 40 ~~~~~~~~l~------~dg~i~~~ef~~~~~~ 65 (146)
+++++++.++ ..|.+.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 6778888888 7899999999987754
No 214
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=35.18 E-value=69 Score=17.52 Aligned_cols=30 Identities=33% Similarity=0.374 Sum_probs=21.8
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHhh
Q 032169 20 GDGLVSLEELNWVLERIGVHFTLEELEALV 49 (146)
Q Consensus 20 ~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (146)
..|+|+..||..-+.....--+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 369999999988877665555666666554
No 215
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=35.06 E-value=33 Score=24.22 Aligned_cols=44 Identities=11% Similarity=0.272 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh
Q 032169 6 ANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV 49 (146)
Q Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (146)
+..++++|.-||++.=-..+.+++..+|..-++--...++..++
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi 96 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAII 96 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHH
Confidence 67799999999998878889999999988766655667777766
No 216
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=34.58 E-value=2.1e+02 Score=21.93 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=29.3
Q ss_pred cccHHHHHHHHHHc-CCCCCHHHHHHhh---hCCCccHHHHHHHHHHHhhh
Q 032169 23 LVSLEELNWVLERI-GVHFTLEELEALV---EKPSLCFDEFLFFCDSIISN 69 (146)
Q Consensus 23 ~i~~~e~~~~l~~l-~~~~~~~~~~~l~---~dg~i~~~ef~~~~~~~~~~ 69 (146)
.++.+|...++..+ .-..++.++..++ .-...+.+|...++..+...
T Consensus 9 ~Lt~eEa~~~~~~il~g~~~~~q~~AfL~alr~kget~~Elag~~~a~~~~ 59 (330)
T TIGR01245 9 DLSRDEAEQLMKEIMSGEASPAQIAAILAALRIKGETPEEITGFAKAMREH 59 (330)
T ss_pred CcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 47777777777665 3456666666666 33445677766666655544
No 217
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=34.52 E-value=62 Score=21.19 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=36.1
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHc-CCCCCCChhHHHhhhhh
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARL-GLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~-g~~~~~~~~~~~~l~~~ 145 (146)
.....+..+|+.|-. +.|+.+.+..++... |..+ |..+++=+..+
T Consensus 34 tf~~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~L--T~~Qi~Yl~~~ 79 (122)
T PF06648_consen 34 TFLDKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKL--TRSQIDYLYNR 79 (122)
T ss_pred hHHHHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhc--CHHHHHHHHHH
Confidence 777889999999964 469999999999887 5666 99888766544
No 218
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=34.30 E-value=1.4e+02 Score=19.87 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=38.9
Q ss_pred hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcC
Q 032169 50 EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLG 129 (146)
Q Consensus 50 ~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g 129 (146)
.....+.++|+.-+....+...+ . .....+..+|..+.. .|+..|+.++.+.+.
T Consensus 72 ~~~~~s~~dFl~Rv~~~~g~~~~----------------v------d~e~a~~AVf~vL~r----~Is~gei~~v~s~Lp 125 (135)
T COG5502 72 PKLPFSLDDFLTRVANKFGLEPP----------------V------DPEHAIAAVFAVLKR----HISPGEIDKVRSRLP 125 (135)
T ss_pred CCCcccHHHHHHHHHHccCCCCC----------------C------CHHHHHHHHHHHHHH----hCCHHHHHHHHHHCc
Confidence 45678889998877765544211 2 445556689999974 599999999998775
Q ss_pred C
Q 032169 130 L 130 (146)
Q Consensus 130 ~ 130 (146)
.
T Consensus 126 ~ 126 (135)
T COG5502 126 K 126 (135)
T ss_pred H
Confidence 4
No 219
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=33.96 E-value=1.9e+02 Score=21.08 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=44.9
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCC----CCHHHHHHhh----------hCCCccHHHHHHHHHH
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVH----FTLEELEALV----------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~----~~~~~~~~l~----------~dg~i~~~ef~~~~~~ 65 (146)
|+.+.+-++.+|+..-.--.|+-. .++...+..++.+ +.-+++...+ -.|.|+..+|...+..
T Consensus 6 T~~e~~~W~~l~~r~~~~~~~~Ac-~~yl~gl~~l~l~~d~IPql~~in~~L~~~TGw~~~pV~gli~~~~Ff~~LA~ 82 (221)
T cd00361 6 TEEEHATWRTLYRRLKKLLPTHAC-REYLEGLELLGLPEDRIPQLEDVSEFLKALTGWTLVPVAGLISPRDFFALLAF 82 (221)
T ss_pred CHHHHHHHHHHHHHHHHHhccccC-HHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcCCEEEecCCcCCHHHHHHHHhc
Confidence 566677777788766544444444 4788888888654 4457777777 6889999999998864
No 220
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=33.56 E-value=76 Score=17.92 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=14.9
Q ss_pred ceeHHHHHHHHHHcCCCC
Q 032169 115 FITSEELQSVLARLGLWD 132 (146)
Q Consensus 115 ~Is~~el~~~l~~~g~~~ 132 (146)
.++.+++..+|..+|..+
T Consensus 18 ~i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 18 DLSAEEIEEILKRLGFEV 35 (71)
T ss_pred CCCHHHHHHHHHHCCCeE
Confidence 488899999999988765
No 221
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=33.40 E-value=91 Score=17.35 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=32.5
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh----hCCCccH
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV----EKPSLCF 56 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~----~dg~i~~ 56 (146)
||+....-|+.+|.... +.+.++..++...|. .++.-+...+ ..|.|.+
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~~~GlV~~ 54 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLAEKGLVEY 54 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHHHTTSEEE
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHHHCCCEEe
Confidence 35556667888888875 678899999998885 4444444433 6666654
No 222
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=33.29 E-value=89 Score=20.34 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=35.9
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
..+....+.|..+...+.++|+..-+......+...-..+.+.+.+.|.+
T Consensus 18 kvq~ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y~~~rE~i~~VIet 67 (130)
T COG5611 18 KVQTKAEQFFEELSQKGKLFIPEEVLIELVYVLEHGYKWEREDIYEVIET 67 (130)
T ss_pred hHHHHHHHHHHhcCcCCCccchHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33445788899999999999999988877766533222277777776653
No 223
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=33.27 E-value=74 Score=17.90 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=19.3
Q ss_pred eeHHHHHHHHHHcCCCCCCChhHHHh
Q 032169 116 ITSEELQSVLARLGLWDEEKQPRLQK 141 (146)
Q Consensus 116 Is~~el~~~l~~~g~~~~~~~~~~~~ 141 (146)
.+.+++..+.+..|+.+ |.+++..
T Consensus 25 ~~~e~~~~lA~~~Gf~f--t~~el~~ 48 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEF--TGEDLKE 48 (64)
T ss_pred CCHHHHHHHHHHcCCCC--CHHHHHH
Confidence 45888888888899888 8888754
No 224
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=33.09 E-value=70 Score=23.28 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=33.9
Q ss_pred hhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 104 AFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 104 ~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
++...--++.|.+....+..-+..+.-.+ +..|+.++-.+
T Consensus 156 V~~i~vG~gegQVpL~kL~~~l~KLp~~l--t~~ev~~v~~R 195 (224)
T PF13829_consen 156 VHDIIVGNGEGQVPLRKLQKTLMKLPRNL--TKAEVDAVNKR 195 (224)
T ss_pred eEEEEecCCCCceeHHHHHHHHHhCCccC--CHHHHHHHHHH
Confidence 34555568999999999999999999888 99999987665
No 225
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=32.92 E-value=1.2e+02 Score=18.53 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=25.5
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHhh
Q 032169 22 GLVSLEELNWVLERIGVHFTLEELEALV 49 (146)
Q Consensus 22 G~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (146)
..||..||....+..+++++.++...++
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~ 40 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIA 40 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4589999999999999999999988888
No 226
>cd03348 pro_PheOH Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan hydroxylase (TrpOH). PheOH catalyzes the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor.
Probab=32.52 E-value=2e+02 Score=21.03 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=44.7
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCC----CCHHHHHHhh----------hCCCccHHHHHHHHHH
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVH----FTLEELEALV----------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~----~~~~~~~~l~----------~dg~i~~~ef~~~~~~ 65 (146)
|+.+.+-++.+|+..-.--.|+-. .++...+..++++ +.-+++...+ -.|.|+..+|...+..
T Consensus 12 T~~e~~~W~~l~~r~~~~~~~~Ac-~~yl~gl~~L~l~~d~IPql~~vn~~L~~~TGw~~~pV~Glip~~~Ff~~LA~ 88 (228)
T cd03348 12 TPEEHAVWRTLYERQAKLLPGRAC-DAFLEGLEKLGLPTDRIPDFADVSERLKAATGWTVVAVPGLIPDDEFFEHLAN 88 (228)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccC-HHHHHHHHHcCCCCCCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhc
Confidence 566677777777766544444444 4788888888654 3447777777 6889999999998763
No 227
>PLN02223 phosphoinositide phospholipase C
Probab=32.46 E-value=79 Score=26.19 Aligned_cols=49 Identities=12% Similarity=-0.062 Sum_probs=36.1
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHH---HHcCCCCCCChhHHHhhhhh
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVL---ARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l---~~~g~~~~~~~~~~~~l~~~ 145 (146)
.....++.+|..| ..+.|.++.+.+.+++ ...+-..+.+.++.+.++..
T Consensus 13 ~~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~ 64 (537)
T PLN02223 13 NQPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAE 64 (537)
T ss_pred CCcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 4557899999999 4788999999999999 55432223377777777654
No 228
>PLN02222 phosphoinositide phospholipase C 2
Probab=32.05 E-value=1e+02 Score=25.88 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=35.5
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
.....+..+|..+-. ++.++.++|..+|...+-....+.+.++.++.+
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~ 69 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINS 69 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHh
Confidence 345689999999853 479999999999998853222367777777653
No 229
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=31.08 E-value=1.1e+02 Score=25.08 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=38.4
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh--------------hCCCccHHHHHHHH
Q 032169 12 IFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV--------------EKPSLCFDEFLFFC 63 (146)
Q Consensus 12 ~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~--------------~dg~i~~~ef~~~~ 63 (146)
+|..+-...++.++...|..+|+..|+.-+...+...+ ..+.++-+.|-.++
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 57777666689999999999999999877766666655 23346666666654
No 230
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=29.63 E-value=76 Score=15.93 Aligned_cols=11 Identities=18% Similarity=0.770 Sum_probs=7.1
Q ss_pred ceeHHHHHHHH
Q 032169 115 FITSEELQSVL 125 (146)
Q Consensus 115 ~Is~~el~~~l 125 (146)
++|.+||..++
T Consensus 1 YLsd~dF~~vF 11 (36)
T PF02209_consen 1 YLSDEDFEKVF 11 (36)
T ss_dssp GS-HHHHHHHH
T ss_pred CcCHHHHHHHH
Confidence 46677777777
No 231
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.42 E-value=34 Score=22.27 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=30.2
Q ss_pred hccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 106 SVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 106 ~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
..|+++....||..|+..+-.....-+++++++++.++.
T Consensus 75 ~~y~K~~~~nis~~El~~lk~la~~l~~~~~~~l~~~i~ 113 (120)
T PF06296_consen 75 YIYAKNEKANISDKELKALKKLAKELLNLSEEQLETLIA 113 (120)
T ss_pred EEEcccccCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 467888889999999988777655433448999998875
No 232
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=28.87 E-value=1.8e+02 Score=19.45 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=37.7
Q ss_pred hCCCccHHHHHHHHHHHhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHHcC
Q 032169 50 EKPSLCFDEFLFFCDSIISNNNNNNPNAAADASQNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLARLG 129 (146)
Q Consensus 50 ~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g 129 (146)
+...|++.+|-..+......-. ..... .+.. .........+|..+ |...=+.+-+..+|
T Consensus 45 nGe~Is~~ef~~~v~~~~~~~k---------~~~g~-~~~~----~~~~q~~~qvW~~~-------V~~~ll~~e~eklG 103 (145)
T PF13623_consen 45 NGEKISYQEFQQRVEQATENYK---------QQNGR-SPTE----QEQNQIRNQVWNQM-------VQNILLEQEFEKLG 103 (145)
T ss_pred CCEEcCHHHHHHHHHHHHHHHH---------HHcCC-CCCh----HHHHHHHHHHHHHH-------HHHHHHHHHHHHhC
Confidence 4557999999887765542100 00000 0000 01123344556554 44455566666778
Q ss_pred CCCCCChhHHHhhh
Q 032169 130 LWDEEKQPRLQKHD 143 (146)
Q Consensus 130 ~~~~~~~~~~~~l~ 143 (146)
+.+ +++|+..++
T Consensus 104 i~V--s~~El~d~l 115 (145)
T PF13623_consen 104 ITV--SDDELQDML 115 (145)
T ss_pred Ccc--CHHHHHHHH
Confidence 777 888887776
No 233
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=28.78 E-value=87 Score=24.27 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=26.2
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhh
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKH 142 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l 142 (146)
.+..+++.+|+.+---+.+++..-=++.++.....+. ++++.++.
T Consensus 207 ~~~~di~~~~~~~~d~~~~~~~~Ri~R~~~~~~E~~~--~~~~~~~~ 251 (342)
T cd07894 207 SNCSDIRYAFRYPFDLGRDFFFSRIVREGFQSVELGE--SEEELEER 251 (342)
T ss_pred CCcHHHHHHhhhccccCchHHHHHHHHHHHHHHHhCC--chHHHHHH
Confidence 4456667777766555666666666666666555544 54454443
No 234
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=28.67 E-value=91 Score=18.99 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=21.1
Q ss_pred cceeHHHHHHHHHHcCCCCCCChhHHHhhh
Q 032169 114 GFITSEELQSVLARLGLWDEEKQPRLQKHD 143 (146)
Q Consensus 114 G~Is~~el~~~l~~~g~~~~~~~~~~~~l~ 143 (146)
|+.+..+|.+-|+.+| + |.+++++.+
T Consensus 61 Gy~N~KqllkrLN~f~--i--t~~e~~~al 86 (87)
T PF13331_consen 61 GYGNAKQLLKRLNMFG--I--TREEFEEAL 86 (87)
T ss_pred CCCCHHHHHHHHHHcC--C--CHHHHHHHh
Confidence 7888889998888888 4 778887765
No 235
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=28.50 E-value=1.2e+02 Score=17.09 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=9.9
Q ss_pred CCCCCHHHHHHhh---hCCCccHHHHHHHH
Q 032169 37 GVHFTLEELEALV---EKPSLCFDEFLFFC 63 (146)
Q Consensus 37 ~~~~~~~~~~~l~---~dg~i~~~ef~~~~ 63 (146)
|.+++.+++..++ -+|.++-.+.-.++
T Consensus 12 g~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL 41 (66)
T PF02885_consen 12 GEDLSREEAKAAFDAILDGEVSDAQIAAFL 41 (66)
T ss_dssp T----HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3444445554444 34444444444433
No 236
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=27.98 E-value=90 Score=25.60 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=37.0
Q ss_pred HHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhhC
Q 032169 99 SDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLRV 146 (146)
Q Consensus 99 ~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~~ 146 (146)
..-.-+|..|-...++.++...|..+|+..|++- ++-.+..|+..+
T Consensus 86 rleDLLFyLiaegq~ekipihKFiTALkstGLrt--sDPRLk~mMd~m 131 (622)
T KOG0506|consen 86 RLEDLLFYLIAEGQSEKIPIHKFITALKSTGLRT--SDPRLKDMMDEM 131 (622)
T ss_pred hhhhhhhHHhhcCCcCcccHHHHHHHHHHcCCCc--CCchHHHHHHHH
Confidence 3344578888666679999999999999999987 888888887653
No 237
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=27.97 E-value=1.4e+02 Score=17.65 Aligned_cols=47 Identities=13% Similarity=0.048 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc--CCCCCHHHHHHhh
Q 032169 3 PLTANDLQRIFEKLDRNGDGLVSLEELNWVLERI--GVHFTLEELEALV 49 (146)
Q Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l--~~~~~~~~~~~l~ 49 (146)
......++++|.....-..|+=++.-+..+...+ +..++.+++.+.+
T Consensus 8 ~~~~~~iq~af~~~~a~QCGfCtpG~im~~~~ll~~~~~p~~~ei~~al 56 (75)
T PF01799_consen 8 DGELHPIQQAFVEHGAVQCGFCTPGMIMAAYALLRRNPDPTEEEIREAL 56 (75)
T ss_dssp TTB--HHHHHHHHTT--SSSSSHHHHHHHHHHHHHHSSS-CHHHHHHHT
T ss_pred CCCcCHHHHHHHHhCCCcCCcchHHHHHHHHHHhhcccchhhHHHHHHH
Confidence 4457789999999999999999998776665555 5578889988876
No 238
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=27.84 E-value=40 Score=23.79 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=30.4
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCC
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLGL 130 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~ 130 (146)
...+.++++|.-||.++=-..+.+++.++|..-|+
T Consensus 52 ~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gI 86 (188)
T COG2818 52 KKREAFREAFHGFDPEKVAAMTEEDVERLLADAGI 86 (188)
T ss_pred HhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcch
Confidence 45678999999999999888999999999987775
No 239
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=27.80 E-value=1.1e+02 Score=17.29 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=8.6
Q ss_pred cceeHHHHHHHHHHcCC
Q 032169 114 GFITSEELQSVLARLGL 130 (146)
Q Consensus 114 G~Is~~el~~~l~~~g~ 130 (146)
+.++...+++.+..-|+
T Consensus 43 ~~~~~~~l~~~lD~~gI 59 (64)
T PF09494_consen 43 RKVDPSKLKEWLDSQGI 59 (64)
T ss_pred ceeCHHHHHHHHHHCCc
Confidence 34555555555555443
No 240
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=27.65 E-value=2.2e+02 Score=19.91 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=29.1
Q ss_pred CCCcccHHHHH-HHHHHcCCCCCHHHHHHhhhCCCccHHHHHHHHHHHhh
Q 032169 20 GDGLVSLEELN-WVLERIGVHFTLEELEALVEKPSLCFDEFLFFCDSIIS 68 (146)
Q Consensus 20 ~~G~i~~~e~~-~~l~~l~~~~~~~~~~~l~~dg~i~~~ef~~~~~~~~~ 68 (146)
=||+|+..+.. .+++.++ +....++...+.+|.+++.+.+......++
T Consensus 6 FDgTit~~d~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~e~~~~~~~~~~ 54 (214)
T TIGR03333 6 FDGTITNNDNIISIMKQFA-PPEWEALKDGVLSKTLSIQEGVGRMFGLLP 54 (214)
T ss_pred cCCCCCcchhHHHHHHHhC-cHHHHHHHHHHHcCCccHHHHHHHHHhhCC
Confidence 46889988874 4455443 222344444446789999998865554443
No 241
>PF13592 HTH_33: Winged helix-turn helix
Probab=27.60 E-value=1e+02 Score=17.02 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=9.8
Q ss_pred eeHHHHHHHHHHcCC
Q 032169 116 ITSEELQSVLARLGL 130 (146)
Q Consensus 116 Is~~el~~~l~~~g~ 130 (146)
++..-+.++|..+|.
T Consensus 22 ys~~~v~~lL~r~G~ 36 (60)
T PF13592_consen 22 YSPSGVYRLLKRLGF 36 (60)
T ss_pred EcHHHHHHHHHHcCC
Confidence 566666666666664
No 242
>PLN02859 glutamine-tRNA ligase
Probab=27.39 E-value=2.7e+02 Score=24.39 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=34.6
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
....++.+||+.+-.++...++..+|... +|..+.+|+++++..+.
T Consensus 84 kT~~Ql~AA~kYl~~~~~~~~d~~~Fek~---CGVGV~VT~EqI~~~V~ 129 (788)
T PLN02859 84 KTPAQLEAAFSFFSSTGPESFDLNKFEEA---CGVGVVVSPEDIEAAVN 129 (788)
T ss_pred CCHHHHHHHHHHHHhCCCCccCHHHHHHh---CCCCEEECHHHHHHHHH
Confidence 44568899999997766667877777754 47666669999988765
No 243
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=26.86 E-value=1.5e+02 Score=18.82 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=22.2
Q ss_pred ceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 115 FITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 115 ~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
.||.+.+..+|...|..+ ....+..++.
T Consensus 16 ~iT~e~I~~IL~AAGv~v--e~~~~~~la~ 43 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEV--DEARVKALVA 43 (105)
T ss_pred CCCHHHHHHHHHHhCCcc--cHHHHHHHHH
Confidence 799999999999999776 6666655543
No 244
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=26.75 E-value=2.1e+02 Score=22.72 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.3
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
...+...-++...|.+++|..+.+++.+.+..
T Consensus 91 t~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~ 122 (427)
T KOG2557|consen 91 TDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVV 122 (427)
T ss_pred cccHHHHHHHHHHhhccccccchhHHHHHHHH
Confidence 34455667788899999999999999998876
No 245
>smart00153 VHP Villin headpiece domain.
Probab=26.74 E-value=90 Score=15.63 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=7.4
Q ss_pred ceeHHHHHHHH
Q 032169 115 FITSEELQSVL 125 (146)
Q Consensus 115 ~Is~~el~~~l 125 (146)
+++.+||..++
T Consensus 1 yLsdeeF~~vf 11 (36)
T smart00153 1 YLSDEDFEEVF 11 (36)
T ss_pred CCCHHHHHHHH
Confidence 35667777776
No 246
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=26.72 E-value=1.2e+02 Score=19.58 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=36.1
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhhhCCCccHHHHHHHHHHH
Q 032169 17 DRNGDGLVSLEELNWVLERIGVHFTLEELEALVEKPSLCFDEFLFFCDSI 66 (146)
Q Consensus 17 D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~~dg~i~~~ef~~~~~~~ 66 (146)
|-+.+--|-.+-++.+|+..|++-+.+.++++.....|+-+.+..++..+
T Consensus 47 dL~~nWeVlaEpIQTvmRr~g~~~pYE~LK~lTRg~~it~~~l~~fI~~L 96 (115)
T PF08328_consen 47 DLDENWEVLAEPIQTVMRRYGIPNPYEKLKELTRGKKITKEDLREFIESL 96 (115)
T ss_dssp HHCT-GGGGHHHHHHHHHHTT-SSHHHHHHHHHTTS---HHHHHHHHHTS
T ss_pred HHHHCHHHHHHHHHHHHHHcCCCCHHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence 44666778888999999999999989999998855588888887777653
No 247
>PTZ00315 2'-phosphotransferase; Provisional
Probab=26.63 E-value=1.1e+02 Score=25.57 Aligned_cols=36 Identities=3% Similarity=-0.002 Sum_probs=30.4
Q ss_pred cccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 108 FDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 108 ~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
+..|.+|++..+++.+..+.-+.++ |.+.++.++..
T Consensus 398 L~ld~~Gwv~vd~LL~~~~~~~~~~--t~e~i~~VV~~ 433 (582)
T PTZ00315 398 VPITSNGYVLLDDILRQPPMRNDPV--SVQDVARVVRD 433 (582)
T ss_pred CCcCCCCCEEHHHHHHHHHhcCCCC--CHHHHHHHHHc
Confidence 3578999999999999998777777 99999998753
No 248
>PRK10788 periplasmic folding chaperone; Provisional
Probab=26.36 E-value=3.9e+02 Score=22.38 Aligned_cols=36 Identities=8% Similarity=0.215 Sum_probs=26.5
Q ss_pred HHHHHHcCCCCCHHHHHHhh-------hCCCccHHHHHHHHHH
Q 032169 30 NWVLERIGVHFTLEELEALV-------EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 30 ~~~l~~l~~~~~~~~~~~l~-------~dg~i~~~ef~~~~~~ 65 (146)
....+.+|+..+.+++...+ .+|..+.+.|..++..
T Consensus 102 ~q~A~~lgi~vsd~ev~~~I~~~p~Fq~~G~Fd~~~y~~~L~~ 144 (623)
T PRK10788 102 DQYARELGLGISDEQVKQAIFATPAFQTDGKFDNNKYLAILNQ 144 (623)
T ss_pred HHHHHHcCCCcCHHHHHHHHHhCcccccCCCcCHHHHHHHHHH
Confidence 33445578999999998887 3788888888777643
No 249
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=26.29 E-value=80 Score=15.70 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=11.8
Q ss_pred eHHHHHHHHHHcCCCC
Q 032169 117 TSEELQSVLARLGLWD 132 (146)
Q Consensus 117 s~~el~~~l~~~g~~~ 132 (146)
|.++|+..|...|++.
T Consensus 5 s~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPV 20 (38)
T ss_pred CHHHHHHHHHHcCCCC
Confidence 5677888888877665
No 250
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=26.14 E-value=44 Score=21.16 Aligned_cols=9 Identities=11% Similarity=0.065 Sum_probs=4.7
Q ss_pred ChhHHHhhh
Q 032169 135 KQPRLQKHD 143 (146)
Q Consensus 135 ~~~~~~~l~ 143 (146)
++++++.++
T Consensus 102 ~ee~l~~iL 110 (117)
T PF03874_consen 102 SEEDLEEIL 110 (117)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHHHH
Confidence 555555544
No 251
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=26.12 E-value=99 Score=22.30 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=29.8
Q ss_pred ccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 109 DVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 109 D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
-.|..|+...+++...++.-+.++ +.+.+..++.
T Consensus 53 ~lD~~Gwa~i~~l~~~~~k~~~~~--~~~~l~~iV~ 86 (211)
T COG1859 53 RLDEEGWADIDELLEGLRKAGRWL--TRELLLAVVA 86 (211)
T ss_pred eeccccchhHHHHHHHHHhhccCC--CHHHHHHHHh
Confidence 367889999999999999999998 9988888765
No 252
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=25.63 E-value=24 Score=19.23 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=23.0
Q ss_pred hhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 104 AFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 104 ~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
+|+.+...|+|.+|.+|+..-+.. ..+- ....++.+++
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~~-~~p~--~~~~L~RimR 48 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLPT-SNPS--APPMLDRIMR 48 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTSTC-T-TT--HHHHHHHHHH
T ss_pred cHHHHHHcCCCCCCHHHHHHHcCC-CCcc--hHHHHHHHHH
Confidence 566666666789999999876653 1222 3445565554
No 253
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=25.61 E-value=2e+02 Score=23.77 Aligned_cols=53 Identities=17% Similarity=0.018 Sum_probs=33.6
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh--hCCCccHHHHHHHH
Q 032169 11 RIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV--EKPSLCFDEFLFFC 63 (146)
Q Consensus 11 ~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~--~dg~i~~~ef~~~~ 63 (146)
.+|..+-+.+...++..+|..++..+|......+=...| .+++.+-..++.++
T Consensus 489 ~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~gv~yl~v~ 543 (612)
T COG5069 489 ALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVSGVFYLDVL 543 (612)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccccchHHHHH
Confidence 456655555555699999999999998877655544445 55554333333333
No 254
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=25.57 E-value=2.5e+02 Score=21.60 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=16.2
Q ss_pred cceeHHHHHHHHHHcCCCCCCChhHHHhhh
Q 032169 114 GFITSEELQSVLARLGLWDEEKQPRLQKHD 143 (146)
Q Consensus 114 G~Is~~el~~~l~~~g~~~~~~~~~~~~l~ 143 (146)
|......+..+++.+| + |++|+..++
T Consensus 317 ~~~~~~~~~~~~~~lg--~--t~~ef~~~~ 342 (343)
T TIGR03573 317 GEFPKEDLEYFLKYLG--I--SEEEFWKTV 342 (343)
T ss_pred ccccHHHHHHHHHHhC--C--CHHHHHHHh
Confidence 3444566666666666 4 677776664
No 255
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=25.36 E-value=74 Score=18.88 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 118 SEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 118 ~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
...+..++..+|.+- +++.|+.+|.+
T Consensus 5 ~h~l~~LF~QLGL~~--~~~~I~~FI~~ 30 (74)
T PF10982_consen 5 QHTLSNLFAQLGLDS--SDEAIEAFIET 30 (74)
T ss_dssp -THHHHHHHHHTS-----HHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCC--CHHHHHHHHHh
Confidence 345677888888887 88888887753
No 256
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=25.20 E-value=86 Score=20.78 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCCCCCCChhHHHhhhhhC
Q 032169 119 EELQSVLARLGLWDEEKQPRLQKHDLRV 146 (146)
Q Consensus 119 ~el~~~l~~~g~~~~~~~~~~~~l~~~~ 146 (146)
+-+.++|..+|+| |..+|+.|-.+|
T Consensus 94 ~rV~~aL~rLgvP---s~~dv~~L~~rI 118 (132)
T PF05597_consen 94 ERVARALNRLGVP---SRKDVEALSARI 118 (132)
T ss_pred HHHHHHHHhcCCC---CHHHHHHHHHHH
Confidence 4588999999987 688888876553
No 257
>PHA02142 putative RNA ligase
Probab=25.03 E-value=50 Score=25.87 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=25.1
Q ss_pred HhhhccccCCCcceeHHHHHHHHHHcCCC
Q 032169 103 KAFSVFDVNGDGFITSEELQSVLARLGLW 131 (146)
Q Consensus 103 ~~F~~~D~~~~G~Is~~el~~~l~~~g~~ 131 (146)
.+|..|+.+..++++.+++..++..+|..
T Consensus 273 ~vF~v~~i~~~~yl~~~e~~~~~~~~gl~ 301 (366)
T PHA02142 273 FAFRAWFIDEQRFATDEEFQDLCRTLGME 301 (366)
T ss_pred EEEEEEEeccceeCCHHHHHHHHHHcCCc
Confidence 56777778888999999999999998864
No 258
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=24.83 E-value=92 Score=18.68 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCCCCCChhHHHhh
Q 032169 120 ELQSVLARLGLWDEEKQPRLQKH 142 (146)
Q Consensus 120 el~~~l~~~g~~~~~~~~~~~~l 142 (146)
|+..+|+.+|..+ +++|..-+
T Consensus 21 EIL~ALrkLge~L--s~eE~~FL 41 (78)
T PF06384_consen 21 EILTALRKLGEKL--SPEEEAFL 41 (78)
T ss_dssp HHHHHHHHTT------HHHHHHH
T ss_pred HHHHHHHHhcCCC--CHHHHHHH
Confidence 5667888889888 88776654
No 259
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=24.47 E-value=1.4e+02 Score=16.67 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=23.0
Q ss_pred CChhhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHHcCCC
Q 032169 1 MAPLTANDLQRIFEKLDRNGDGL----VSLEELNWVLERIGVH 39 (146)
Q Consensus 1 ~s~~~~~~l~~~F~~~D~d~~G~----i~~~e~~~~l~~l~~~ 39 (146)
+|+.+..+|...|.. .|+ .+..+...+...+|++
T Consensus 8 Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl~ 45 (58)
T TIGR01565 8 FTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGVT 45 (58)
T ss_pred CCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCCC
Confidence 366777888887765 455 7777777777666643
No 260
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.16 E-value=90 Score=24.93 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHc
Q 032169 8 DLQRIFEKLDRNGDGLVSLEELNWVLERI 36 (146)
Q Consensus 8 ~l~~~F~~~D~d~~G~i~~~e~~~~l~~l 36 (146)
-+-+++.+.|.|++|.++.+||.-+-+.+
T Consensus 478 vlgkiwklad~d~dg~ld~eefala~hli 506 (532)
T KOG1954|consen 478 VLGKIWKLADIDKDGMLDDEEFALANHLI 506 (532)
T ss_pred HHHhhhhhhcCCcccCcCHHHHHHHHHHH
Confidence 35677888899999999999987765544
No 261
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=24.13 E-value=1.8e+02 Score=18.57 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=22.0
Q ss_pred ceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 115 FITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 115 ~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
.||.+.+..+|...|..+ .+..+..++.
T Consensus 16 eITae~I~~IL~AAGveV--d~~~~~ala~ 43 (106)
T cd05832 16 EINEENLKKVLEAAGIEV--DEARVKALVA 43 (106)
T ss_pred CCCHHHHHHHHHHhCCcc--cHHHHHHHHH
Confidence 799999999999999776 6666555543
No 262
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=24.07 E-value=1.4e+02 Score=17.03 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=11.1
Q ss_pred ceeHHHHHHHHHHcCCCC
Q 032169 115 FITSEELQSVLARLGLWD 132 (146)
Q Consensus 115 ~Is~~el~~~l~~~g~~~ 132 (146)
.++.+++.++|+.+|..+
T Consensus 18 ~i~~~~i~~~L~~lg~~~ 35 (70)
T PF03484_consen 18 DISPEEIIKILKRLGFKV 35 (70)
T ss_dssp ---HHHHHHHHHHTT-EE
T ss_pred CCCHHHHHHHHHHCCCEE
Confidence 478888888888887654
No 263
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=23.83 E-value=87 Score=24.12 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=20.2
Q ss_pred cccccccCCCCchhHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 83 QNADEAVDDDSGDEEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
+....+...++.+-..+++..+.+.+|.-= -|+++++..+++.
T Consensus 190 HgT~Dppp~~rvgfs~~Dld~aL~~~~E~l--DIdrddLe~llr~ 232 (382)
T COG3448 190 HGTADPPPSQRVGFSSEDLDAALQRLGETL--DIDRDDLERLLRE 232 (382)
T ss_pred cCCCCCCchhccCCCHHHHHHHHHhcCcee--cCCHHHHHHHHHH
Confidence 333333333344455555555555554221 2555665555543
No 264
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=23.24 E-value=88 Score=20.06 Aligned_cols=26 Identities=23% Similarity=0.118 Sum_probs=17.4
Q ss_pred eHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 117 TSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 117 s~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
+.+|++.++..+..++ ++++++.|+.
T Consensus 84 s~~E~~~lI~sl~~r~--~ee~l~~iL~ 109 (118)
T smart00657 84 TAEEAQLLIPSLEERI--DEEELEELLD 109 (118)
T ss_pred CHHHHHHHhhhhhccC--CHHHHHHHHH
Confidence 4556666666666666 7777777764
No 265
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=22.79 E-value=4.1e+02 Score=21.47 Aligned_cols=48 Identities=15% Similarity=0.112 Sum_probs=33.5
Q ss_pred CcccHHHHHHHHHHc-CCCCCHHHHHHhh---hCCCccHHHHHHHHHHHhhh
Q 032169 22 GLVSLEELNWVLERI-GVHFTLEELEALV---EKPSLCFDEFLFFCDSIISN 69 (146)
Q Consensus 22 G~i~~~e~~~~l~~l-~~~~~~~~~~~l~---~dg~i~~~ef~~~~~~~~~~ 69 (146)
..++.+|...++..+ .-..++.++..++ .-.-++.+|...+...+...
T Consensus 14 ~~Lt~eE~~~~~~~i~~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~aM~~s 65 (434)
T PRK06078 14 KELTTEEINFFIEGYTNGTIPDYQMSALAMAIYFKDMTDRERADLTMAMVNS 65 (434)
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 458888888888776 3466777777776 44457888877776665554
No 266
>PRK09462 fur ferric uptake regulator; Provisional
Probab=22.71 E-value=1.4e+02 Score=19.67 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=28.5
Q ss_pred HHhhhccccCCCcceeHHHHHHHHHHcCCCCCCChhHHHhhh
Q 032169 102 YKAFSVFDVNGDGFITSEELQSVLARLGLWDEEKQPRLQKHD 143 (146)
Q Consensus 102 ~~~F~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~ 143 (146)
..+++.+-...++.+|.+|+...+..-+..+ +...+...+
T Consensus 20 ~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i--~~aTVYR~L 59 (148)
T PRK09462 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEI--GLATVYRVL 59 (148)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC--CHHHHHHHH
Confidence 4455555444567899999999999888777 666665544
No 267
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=22.66 E-value=29 Score=20.13 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=16.2
Q ss_pred CCCcceeHHHHHHHHHHc-CCCCCCChhHHHhhhh
Q 032169 111 NGDGFITSEELQSVLARL-GLWDEEKQPRLQKHDL 144 (146)
Q Consensus 111 ~~~G~Is~~el~~~l~~~-g~~~~~~~~~~~~l~~ 144 (146)
.|...++.+++..+++.+ |.++ +..+++.++.
T Consensus 9 ~G~~~~~~~~l~~~~~~~~g~~l--~~~~l~~~~~ 41 (76)
T PF08479_consen 9 EGNTLLPEEELQAILAPYIGRCL--TLADLQQLAD 41 (76)
T ss_dssp ES-TSSSCCHHHHHHGGGTTSBB---HHHHHHHHH
T ss_pred ECCCcCCHHHHHHHHHHhcCCCc--CHHHHHHHHH
Confidence 344455555666665553 5555 5555555543
No 268
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=22.53 E-value=1.1e+02 Score=19.77 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=20.2
Q ss_pred eeHHHHHHHHHHcCCCCCCChhHHHhhhhh
Q 032169 116 ITSEELQSVLARLGLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 116 Is~~el~~~l~~~g~~~~~~~~~~~~l~~~ 145 (146)
+-.+.+..+|..+|.+ |.++++.|-.+
T Consensus 78 ~~~~~v~~~L~~lg~~---tk~ev~~L~~R 104 (118)
T TIGR01837 78 AFDERVEQALNRLNIP---SREEIEALSAK 104 (118)
T ss_pred HHHHHHHHHHHHcCCC---CHHHHHHHHHH
Confidence 4456788899999976 68888877554
No 269
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=22.34 E-value=1.5e+02 Score=18.66 Aligned_cols=29 Identities=14% Similarity=0.043 Sum_probs=21.7
Q ss_pred CcceeHHHHHHHHHHcCCCCCCChhHHHhhh
Q 032169 113 DGFITSEELQSVLARLGLWDEEKQPRLQKHD 143 (146)
Q Consensus 113 ~G~Is~~el~~~l~~~g~~~~~~~~~~~~l~ 143 (146)
.-.+|.+++..+++..|..+ ....+..++
T Consensus 15 ~~~~Tae~I~~ilkAaGvev--e~~~~~~f~ 43 (103)
T cd05831 15 GIEITADNINALLKAAGVNV--EPYWPGLFA 43 (103)
T ss_pred CCCCCHHHHHHHHHHcCCcc--cHHHHHHHH
Confidence 34699999999999999876 555555443
No 270
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=21.97 E-value=1.6e+02 Score=22.60 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=28.5
Q ss_pred hCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh--hCCCccH
Q 032169 16 LDRNGDGLVSLEELNWVLERIGVHFTLEELEALV--EKPSLCF 56 (146)
Q Consensus 16 ~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~--~dg~i~~ 56 (146)
|-+.++|.++..++.+.+. .-..|.+++.+.+ +.|.+.|
T Consensus 211 fspersG~lP~~dlv~lcf--Sgk~t~~El~k~i~g~gG~~ay 251 (358)
T COG3426 211 FSPERSGTLPTGDLVRLCF--SGKYTEEELLKKITGKGGLVAY 251 (358)
T ss_pred CCcccCCCCChHHHHHHHh--cCcccHHHHHHHhhcCCceEEE
Confidence 3467789999999988774 3357888888888 5555554
No 271
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=21.95 E-value=1.9e+02 Score=17.22 Aligned_cols=22 Identities=27% Similarity=0.653 Sum_probs=12.4
Q ss_pred HHHHHhhhccccCCCcceeHHH
Q 032169 99 SDLYKAFSVFDVNGDGFITSEE 120 (146)
Q Consensus 99 ~~~~~~F~~~D~~~~G~Is~~e 120 (146)
+.+..-|..||.+..|.+|...
T Consensus 64 ~~II~~~~LF~~~~~~iltS~~ 85 (87)
T PF14297_consen 64 EEIINEYGLFDIEEYGILTSEG 85 (87)
T ss_pred HHHHHHhCCcccCCCcEEechh
Confidence 3444456677766666555443
No 272
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.57 E-value=65 Score=19.88 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=16.9
Q ss_pred CCCcceeHHHHHHHHHHcCCCCCCChh
Q 032169 111 NGDGFITSEELQSVLARLGLWDEEKQP 137 (146)
Q Consensus 111 ~~~G~Is~~el~~~l~~~g~~~~~~~~ 137 (146)
-+++.-+++++.+-|+.+|+++ +++
T Consensus 37 TNns~~s~~~~~~~L~~~Gi~~--~~~ 61 (101)
T PF13344_consen 37 TNNSSRSREEYAKKLKKLGIPV--DED 61 (101)
T ss_dssp ES-SSS-HHHHHHHHHHTTTT----GG
T ss_pred eCCCCCCHHHHHHHHHhcCcCC--CcC
Confidence 4556788899999999999887 554
No 273
>PHA02335 hypothetical protein
Probab=21.47 E-value=2.3e+02 Score=18.10 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=11.6
Q ss_pred hCCCccHHHHHHHHHH
Q 032169 50 EKPSLCFDEFLFFCDS 65 (146)
Q Consensus 50 ~dg~i~~~ef~~~~~~ 65 (146)
+-..|++++|..-+.+
T Consensus 21 np~sVt~ddf~~DlkR 36 (118)
T PHA02335 21 NPQSVTYDDFEEDLKR 36 (118)
T ss_pred CcccccHHHHHHHHHH
Confidence 3467899998877654
No 274
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=21.41 E-value=50 Score=26.54 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=25.4
Q ss_pred hHHHHHHHhhhccccCCCcceeHHHHHHHHHH
Q 032169 96 EEISDLYKAFSVFDVNGDGFITSEELQSVLAR 127 (146)
Q Consensus 96 ~~~~~~~~~F~~~D~~~~G~Is~~el~~~l~~ 127 (146)
...+.++.+.+..|-|.+|.|+.+|=-.+++.
T Consensus 65 lg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 65 LGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred hhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 55677888888888889998888887777754
No 275
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=21.27 E-value=52 Score=20.18 Aligned_cols=16 Identities=31% Similarity=0.760 Sum_probs=13.6
Q ss_pred ccCCCcceeHHHHHHH
Q 032169 109 DVNGDGFITSEELQSV 124 (146)
Q Consensus 109 D~~~~G~Is~~el~~~ 124 (146)
|-++.|.||+.-++++
T Consensus 69 ddD~gGWITPsNIkqi 84 (87)
T PF15017_consen 69 DDDGGGWITPSNIKQI 84 (87)
T ss_pred cCCCCccccchhhhhh
Confidence 6688999999988875
No 276
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=21.14 E-value=1.2e+02 Score=17.62 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=18.1
Q ss_pred ceeHHHHHHHHHHcCCCCCCChhHHHhhhh
Q 032169 115 FITSEELQSVLARLGLWDEEKQPRLQKHDL 144 (146)
Q Consensus 115 ~Is~~el~~~l~~~g~~~~~~~~~~~~l~~ 144 (146)
.-+-+|+...|...|+.+ |+..+-.-+.
T Consensus 19 i~sQ~eL~~~L~~~Gi~v--TQaTiSRDLk 46 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEV--TQATISRDLK 46 (70)
T ss_dssp --SHHHHHHHHHHTT-T----HHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCc--chhHHHHHHH
Confidence 557889999999999888 8877665443
No 277
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=21.11 E-value=3.2e+02 Score=19.62 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=30.3
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHhh---hCCCccHHHHHHHHHHHhh
Q 032169 19 NGDGLVSLEELNWVLERIGVHFTLEELEALV---EKPSLCFDEFLFFCDSIIS 68 (146)
Q Consensus 19 d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~---~dg~i~~~ef~~~~~~~~~ 68 (146)
|=||.|+.++....+..- ....+...+. -++++++.+...-+-...+
T Consensus 9 DFDGTITl~Ds~~~itdt---f~~~e~k~l~~~vls~tiS~rd~~g~mf~~i~ 58 (220)
T COG4359 9 DFDGTITLNDSNDYITDT---FGPGEWKALKDGVLSKTISFRDGFGRMFGSIH 58 (220)
T ss_pred cCCCceEecchhHHHHhc---cCchHHHHHHHHHhhCceeHHHHHHHHHHhcC
Confidence 457899999998887642 2222333444 7888998877665544433
No 278
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=21.03 E-value=1.4e+02 Score=23.51 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=21.2
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHcCCCC
Q 032169 13 FEKLDRNGDGLVSLEELNWVLERIGVHF 40 (146)
Q Consensus 13 F~~~D~d~~G~i~~~e~~~~l~~l~~~~ 40 (146)
|..+|.+....++..+-..++..+|++.
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~ 190 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPH 190 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCc
Confidence 3334445578899999999999888765
No 279
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=21.01 E-value=3.9e+02 Score=20.46 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=39.6
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc----CCC----CCHHHHHHhh----------hCCCccHHHHHHHH
Q 032169 2 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERI----GVH----FTLEELEALV----------EKPSLCFDEFLFFC 63 (146)
Q Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l----~~~----~~~~~~~~l~----------~dg~i~~~ef~~~~ 63 (146)
|+.+.+-++.+|+..-.--.++-. .++...+..| |++ +.-+++...+ -.|.|+..+|...+
T Consensus 61 T~eE~~~W~~l~~r~~~l~~~~Ac-~eyl~gl~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~~L 139 (298)
T cd03345 61 TAEEIATWKEVYKTLKDLHATHAC-KEYLDAFQLLEKECGYSEDRIPQLEDVSEFLKERTGFQLRPVAGLLSARDFLASL 139 (298)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhccCCEEEecCccCCHHHHHHHH
Confidence 455556666666655333233222 3666666665 443 3447777777 58899999999987
Q ss_pred HH
Q 032169 64 DS 65 (146)
Q Consensus 64 ~~ 65 (146)
..
T Consensus 140 A~ 141 (298)
T cd03345 140 AF 141 (298)
T ss_pred hc
Confidence 63
No 280
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=20.92 E-value=2.3e+02 Score=17.81 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHhh
Q 032169 4 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALV 49 (146)
Q Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (146)
....++.++...+=...+|.++..+++.+....| ++..++..++
T Consensus 45 e~~~~~~~~i~~~~~~~~~~~~~~~i~~~r~~~g--ltq~~lA~~l 88 (127)
T TIGR03830 45 EESKRNSAALADFYRKVDGLLTPPEIRRIRKKLG--LSQREAAELL 88 (127)
T ss_pred HHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 3344444444344356678888888888877664 5677777766
No 281
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=20.64 E-value=79 Score=22.55 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.0
Q ss_pred hhhccccCCCcceeHHHHHHHHHHc
Q 032169 104 AFSVFDVNGDGFITSEELQSVLARL 128 (146)
Q Consensus 104 ~F~~~D~~~~G~Is~~el~~~l~~~ 128 (146)
+..-+|.|++|.++.+|+..+...+
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHH
Confidence 3446899999999999999988764
No 282
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=20.63 E-value=2.7e+02 Score=18.56 Aligned_cols=32 Identities=13% Similarity=-0.057 Sum_probs=21.1
Q ss_pred CCcceeHHHHHHHHHHc-CCCCCCChhHHHhhhhh
Q 032169 112 GDGFITSEELQSVLARL-GLWDEEKQPRLQKHDLR 145 (146)
Q Consensus 112 ~~G~Is~~el~~~l~~~-g~~~~~~~~~~~~l~~~ 145 (146)
..+.|+.+-|+..|++. ...+ .++-++.+..+
T Consensus 45 ~~~~Id~egF~~Fm~~yLe~d~--P~~lc~hLF~s 77 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTYLEVDL--PEDLCQHLFLS 77 (138)
T ss_dssp ETTEE-HHHHHHHHHHHTT-S----HHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence 34489999999999985 6666 77777766543
No 283
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=20.49 E-value=1.9e+02 Score=16.55 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHcCCC-----------CCHHHHHHhhhCCCccHHHHHHHHHHH
Q 032169 25 SLEELNWVLERIGVH-----------FTLEELEALVEKPSLCFDEFLFFCDSI 66 (146)
Q Consensus 25 ~~~e~~~~l~~l~~~-----------~~~~~~~~l~~dg~i~~~ef~~~~~~~ 66 (146)
+..++...|+.+|+- +...++..++..|-|+-++|..+...+
T Consensus 3 tlyDVqQLLK~fG~~IY~gdr~~DielM~~El~~Ly~~~lidk~~y~~A~liL 55 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYVGDRLWDIELMEIELKELYKSGLIDKKEYLTAKLIL 55 (62)
T ss_dssp SHHHHHHHHHTTS-----S-HHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCEEEEeCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 345677777776542 233555566589999999999876543
No 284
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=20.33 E-value=1.3e+02 Score=14.56 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=14.9
Q ss_pred ceeHHHHHHHHHHcCCCC
Q 032169 115 FITSEELQSVLARLGLWD 132 (146)
Q Consensus 115 ~Is~~el~~~l~~~g~~~ 132 (146)
.++..+++..++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 567889999999988775
No 285
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=20.02 E-value=2.2e+02 Score=17.33 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=33.7
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHhh----hCCCccHHHHHHHHHHH
Q 032169 19 NGDGLVSLEELNWVLERIGVHFTLEELEALV----EKPSLCFDEFLFFCDSI 66 (146)
Q Consensus 19 d~~G~i~~~e~~~~l~~l~~~~~~~~~~~l~----~dg~i~~~ef~~~~~~~ 66 (146)
-++|.|+.++...+-.. +-+.+.+.+++ ..|....+-|+.++...
T Consensus 25 l~n~~it~E~y~~V~a~---~T~qdkmRkLld~v~akG~~~k~~F~~iL~e~ 73 (85)
T cd08324 25 LKNDYFSTEDAEIVCAC---PTQPDKVRKILDLVQSKGEEVSEYFLYLLQQL 73 (85)
T ss_pred hccCCccHHHHHHHHhC---CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 45789999998877652 45567788888 67888888888877654
Done!