Query 032174
Match_columns 146
No_of_seqs 116 out of 1725
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 10:35:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08353 Glo_EDI_BRP_like_7 Thi 99.9 7.6E-23 1.7E-27 132.4 15.9 121 23-144 1-141 (142)
2 PRK11478 putative lyase; Provi 99.9 1.7E-22 3.8E-27 128.5 16.2 123 21-144 2-129 (129)
3 PLN02367 lactoylglutathione ly 99.9 1.6E-22 3.4E-27 138.8 16.2 121 25-145 75-223 (233)
4 PLN03042 Lactoylglutathione ly 99.9 7.1E-22 1.5E-26 132.7 16.2 122 24-145 26-175 (185)
5 cd08352 Glo_EDI_BRP_like_1 Thi 99.9 1.1E-21 2.3E-26 123.7 14.8 119 24-143 2-125 (125)
6 cd08342 HPPD_N_like N-terminal 99.9 5.5E-22 1.2E-26 127.7 13.5 119 26-146 1-125 (136)
7 TIGR03645 glyox_marine lactoyl 99.9 1.6E-21 3.5E-26 129.0 15.4 122 24-145 3-152 (162)
8 cd07241 Glo_EDI_BRP_like_3 Thi 99.9 1.1E-21 2.3E-26 123.9 13.9 117 25-142 1-125 (125)
9 PRK04101 fosfomycin resistance 99.9 3.1E-21 6.7E-26 124.6 14.5 113 22-144 1-119 (139)
10 cd08364 FosX FosX, a fosfomyci 99.9 6.2E-21 1.3E-25 122.1 14.2 115 22-144 1-122 (131)
11 cd07233 Glyoxalase_I Glyoxalas 99.9 7.5E-21 1.6E-25 119.5 14.4 114 26-142 1-121 (121)
12 TIGR00068 glyox_I lactoylgluta 99.9 7.5E-21 1.6E-25 124.3 14.6 122 20-145 12-142 (150)
13 TIGR03081 metmalonyl_epim meth 99.9 3.4E-21 7.5E-26 122.2 12.4 119 25-143 1-128 (128)
14 cd07245 Glo_EDI_BRP_like_9 Thi 99.9 6.7E-21 1.5E-25 117.9 13.1 110 26-141 1-114 (114)
15 cd08347 PcpA_C_like C-terminal 99.9 1.4E-20 3E-25 123.9 14.2 113 25-145 1-121 (157)
16 cd07253 Glo_EDI_BRP_like_2 Thi 99.9 2.7E-20 5.9E-25 117.3 14.9 117 23-144 1-125 (125)
17 PRK10291 glyoxalase I; Provisi 99.9 9.1E-21 2E-25 120.9 12.8 112 30-145 1-121 (129)
18 PLN02300 lactoylglutathione ly 99.9 1.6E-20 3.4E-25 134.6 15.1 123 19-145 18-149 (286)
19 cd07243 2_3_CTD_C C-terminal d 99.9 1.7E-20 3.7E-25 121.7 13.9 114 21-143 2-124 (143)
20 cd08363 FosB FosB, a fosfomyci 99.9 1.5E-20 3.3E-25 120.3 13.2 110 26-145 1-116 (131)
21 cd09014 BphC-JF8_C_like C-term 99.9 4.4E-20 9.5E-25 122.6 14.5 118 21-144 2-127 (166)
22 cd08355 Glo_EDI_BRP_like_14 Th 99.8 2.3E-19 4.9E-24 113.2 15.9 116 29-144 3-122 (122)
23 cd08361 PpCmtC_N N-terminal do 99.8 1.6E-19 3.4E-24 114.5 15.2 109 21-145 2-120 (124)
24 cd07255 Glo_EDI_BRP_like_12 Th 99.8 2.2E-19 4.8E-24 113.5 15.6 113 24-145 1-120 (125)
25 cd08351 ChaP_like ChaP, an enz 99.8 1.2E-19 2.7E-24 114.7 14.3 106 24-145 3-122 (123)
26 cd09011 Glo_EDI_BRP_like_23 Th 99.8 9.8E-20 2.1E-24 114.6 13.7 113 25-144 2-119 (120)
27 cd07267 THT_Oxygenase_N N-term 99.8 1.3E-19 2.8E-24 113.0 14.0 106 23-143 1-109 (113)
28 cd07263 Glo_EDI_BRP_like_16 Th 99.8 1.6E-19 3.6E-24 112.7 14.5 113 28-143 1-119 (119)
29 cd07242 Glo_EDI_BRP_like_6 Thi 99.8 2.2E-19 4.7E-24 114.0 14.7 114 25-144 1-128 (128)
30 cd07247 SgaA_N_like N-terminal 99.8 2.4E-19 5.2E-24 111.7 14.6 109 26-143 1-114 (114)
31 cd07252 BphC1-RGP6_N_like N-te 99.8 2E-19 4.3E-24 113.3 14.3 108 24-145 1-118 (120)
32 cd09013 BphC-JF8_N_like N-term 99.8 9.9E-20 2.2E-24 114.8 12.9 108 21-145 2-119 (121)
33 cd07249 MMCE Methylmalonyl-CoA 99.8 1.3E-19 2.8E-24 114.8 13.2 118 26-143 1-128 (128)
34 cd08346 PcpA_N_like N-terminal 99.8 1.5E-19 3.2E-24 114.1 12.5 116 25-142 1-126 (126)
35 cd07244 FosA FosA, a Fosfomyci 99.8 1.8E-19 3.9E-24 113.6 12.8 107 25-144 1-110 (121)
36 cd08362 BphC5-RrK37_N_like N-t 99.8 2.4E-19 5.1E-24 112.6 13.2 108 23-144 1-117 (120)
37 cd08345 Fosfomycin_RP Fosfomyc 99.8 1.9E-19 4E-24 112.0 12.6 105 28-144 1-111 (113)
38 cd07246 Glo_EDI_BRP_like_8 Thi 99.8 8.2E-19 1.8E-23 110.3 15.5 113 29-143 5-121 (122)
39 cd08348 BphC2-C3-RGP6_C_like T 99.8 7.5E-19 1.6E-23 112.5 15.5 113 25-145 1-121 (134)
40 cd07265 2_3_CTD_N N-terminal d 99.8 3.5E-19 7.5E-24 112.4 13.7 108 23-144 2-119 (122)
41 cd08358 Glo_EDI_BRP_like_21 Th 99.8 6E-19 1.3E-23 111.8 14.7 110 25-143 2-126 (127)
42 cd07257 THT_oxygenase_C The C- 99.8 1.1E-19 2.3E-24 119.3 11.7 114 25-144 1-125 (153)
43 cd08360 MhqB_like_C C-terminal 99.8 5.6E-19 1.2E-23 113.3 14.2 107 24-144 2-120 (134)
44 cd07240 ED_TypeI_classII_N N-t 99.8 5.7E-19 1.2E-23 110.3 13.5 107 24-145 1-115 (117)
45 cd07237 BphC1-RGP6_C_like C-te 99.8 3.9E-19 8.4E-24 116.7 13.3 111 24-144 8-131 (154)
46 cd08359 Glo_EDI_BRP_like_22 Th 99.8 7.6E-19 1.6E-23 110.2 14.1 109 28-143 4-119 (119)
47 PRK06724 hypothetical protein; 99.8 5.2E-19 1.1E-23 112.7 13.3 108 22-145 4-124 (128)
48 cd07264 Glo_EDI_BRP_like_15 Th 99.8 1.2E-18 2.5E-23 110.1 14.7 115 26-144 1-125 (125)
49 PF00903 Glyoxalase: Glyoxalas 99.8 2.4E-20 5.2E-25 117.8 6.7 117 25-141 1-128 (128)
50 cd07256 HPCD_C_class_II C-term 99.8 1.2E-18 2.6E-23 115.2 14.3 112 24-144 2-123 (161)
51 cd08350 BLMT_like BLMT, a bleo 99.8 1.5E-18 3.2E-23 109.3 13.4 103 29-144 6-119 (120)
52 cd09012 Glo_EDI_BRP_like_24 Th 99.8 1.3E-18 2.8E-23 110.1 13.1 113 26-143 1-123 (124)
53 cd08343 ED_TypeI_classII_C C-t 99.8 3.3E-18 7.2E-23 109.3 14.1 108 27-145 1-118 (131)
54 cd08357 Glo_EDI_BRP_like_18 Th 99.8 3E-18 6.5E-23 108.2 13.3 111 28-144 2-125 (125)
55 cd08354 Glo_EDI_BRP_like_13 Th 99.8 5.3E-18 1.1E-22 106.6 14.0 114 26-144 1-122 (122)
56 cd07239 BphC5-RK37_C_like C-te 99.8 4.4E-18 9.6E-23 110.5 13.8 106 24-145 3-118 (144)
57 cd07235 MRD Mitomycin C resist 99.8 5.1E-18 1.1E-22 106.9 13.7 113 26-143 1-122 (122)
58 cd08349 BLMA_like Bleomycin bi 99.8 6.9E-18 1.5E-22 104.5 13.9 106 29-143 2-112 (112)
59 cd07254 Glo_EDI_BRP_like_20 Th 99.8 1.1E-17 2.4E-22 105.1 14.9 107 27-145 3-118 (120)
60 cd07266 HPCD_N_class_II N-term 99.8 4.3E-18 9.3E-23 107.1 13.0 107 23-144 2-118 (121)
61 PF12681 Glyoxalase_2: Glyoxal 99.8 5.9E-18 1.3E-22 104.3 12.7 100 31-142 1-108 (108)
62 cd08356 Glo_EDI_BRP_like_17 Th 99.8 5.1E-18 1.1E-22 105.9 12.2 100 29-143 5-113 (113)
63 cd07261 Glo_EDI_BRP_like_11 Th 99.8 1.6E-17 3.4E-22 103.5 14.3 106 29-143 2-114 (114)
64 cd07238 Glo_EDI_BRP_like_5 Thi 99.8 1.7E-17 3.7E-22 103.0 14.0 101 29-144 4-111 (112)
65 TIGR03211 catechol_2_3 catecho 99.8 1.2E-17 2.5E-22 120.6 14.2 114 19-142 139-263 (303)
66 cd07258 PpCmtC_C C-terminal do 99.8 1.1E-17 2.4E-22 108.3 12.6 104 27-143 1-113 (141)
67 cd06587 Glo_EDI_BRP_like This 99.8 1.7E-17 3.7E-22 101.7 12.7 108 28-141 1-112 (112)
68 cd07262 Glo_EDI_BRP_like_19 Th 99.8 2.6E-17 5.6E-22 103.8 13.2 107 26-142 1-122 (123)
69 cd08344 MhqB_like_N N-terminal 99.8 3.4E-17 7.4E-22 101.9 12.8 101 25-144 2-109 (112)
70 cd07251 Glo_EDI_BRP_like_10 Th 99.8 6.6E-17 1.4E-21 101.4 13.1 110 29-143 2-120 (121)
71 TIGR03213 23dbph12diox 2,3-dih 99.8 5.5E-17 1.2E-21 116.3 14.0 108 23-144 1-118 (286)
72 TIGR02295 HpaD 3,4-dihydroxyph 99.7 8.2E-17 1.8E-21 115.7 14.2 114 20-144 131-256 (294)
73 KOG2944 Glyoxalase [Carbohydra 99.7 1.5E-16 3.3E-21 101.4 12.4 120 25-145 42-169 (170)
74 TIGR03213 23dbph12diox 2,3-dih 99.7 2E-16 4.2E-21 113.5 14.2 113 23-143 140-262 (286)
75 TIGR02295 HpaD 3,4-dihydroxyph 99.7 2E-16 4.3E-21 113.7 13.7 107 23-144 2-115 (294)
76 TIGR03211 catechol_2_3 catecho 99.7 2.9E-16 6.3E-21 113.4 13.6 106 23-145 2-119 (303)
77 PF13669 Glyoxalase_4: Glyoxal 99.7 5.5E-17 1.2E-21 100.6 8.0 93 27-121 1-95 (109)
78 PLN02300 lactoylglutathione ly 99.7 9.9E-16 2.1E-20 109.9 13.7 118 24-145 153-279 (286)
79 COG3324 Predicted enzyme relat 99.6 2.7E-14 5.9E-19 89.5 12.8 115 23-145 7-126 (127)
80 COG2514 Predicted ring-cleavag 99.6 2.4E-14 5.2E-19 99.1 13.1 114 24-146 9-128 (265)
81 COG3607 Predicted lactoylgluta 99.6 2E-14 4.3E-19 88.3 10.5 118 25-146 3-129 (133)
82 COG3565 Predicted dioxygenase 99.6 2.3E-13 5.1E-18 82.5 11.6 111 26-144 5-129 (138)
83 cd07250 HPPD_C_like C-terminal 99.5 1.5E-13 3.2E-18 93.2 8.7 100 23-122 1-111 (191)
84 cd06588 PhnB_like Escherichia 99.4 2.1E-11 4.5E-16 77.6 13.9 106 30-141 4-127 (128)
85 TIGR01263 4HPPD 4-hydroxypheny 99.4 8E-12 1.7E-16 92.2 10.6 104 19-122 152-266 (353)
86 TIGR01263 4HPPD 4-hydroxypheny 99.4 3.4E-11 7.4E-16 88.9 13.6 97 25-122 2-100 (353)
87 COG2764 PhnB Uncharacterized p 99.3 3.2E-10 7E-15 72.3 13.9 113 30-145 5-132 (136)
88 COG0346 GloA Lactoylglutathion 99.3 1.1E-11 2.5E-16 77.8 7.0 119 25-143 2-138 (138)
89 PRK01037 trmD tRNA (guanine-N( 99.2 1.4E-10 3.1E-15 83.7 10.6 104 25-144 247-354 (357)
90 KOG2943 Predicted glyoxalase [ 99.2 2E-10 4.4E-15 78.4 8.8 118 24-145 16-144 (299)
91 PLN02875 4-hydroxyphenylpyruva 99.2 1.9E-10 4.2E-15 85.3 9.4 101 21-121 176-293 (398)
92 KOG0638 4-hydroxyphenylpyruvat 99.0 5.5E-09 1.2E-13 74.1 8.3 106 18-123 10-120 (381)
93 PF13468 Glyoxalase_3: Glyoxal 98.9 3.2E-09 7E-14 71.0 5.8 93 26-118 1-101 (175)
94 COG2514 Predicted ring-cleavag 98.9 2.7E-08 5.8E-13 69.4 9.7 97 24-142 167-264 (265)
95 PF14696 Glyoxalase_5: Hydroxy 98.8 2.6E-08 5.7E-13 63.8 7.7 121 19-144 3-126 (139)
96 KOG2943 Predicted glyoxalase [ 98.8 3.6E-08 7.7E-13 67.6 8.3 111 25-143 149-269 (299)
97 PF14506 CppA_N: CppA N-termin 98.7 1.9E-06 4E-11 53.2 13.0 109 27-144 2-114 (125)
98 PRK10148 hypothetical protein; 98.7 2.5E-06 5.5E-11 55.5 14.6 108 30-144 6-141 (147)
99 PLN02875 4-hydroxyphenylpyruva 98.7 7.4E-07 1.6E-11 66.5 12.4 119 26-144 1-151 (398)
100 COG3185 4-hydroxyphenylpyruvat 98.4 6.8E-07 1.5E-11 64.6 4.8 103 19-121 161-272 (363)
101 COG3185 4-hydroxyphenylpyruvat 97.8 0.00071 1.5E-08 49.4 10.7 114 17-135 14-141 (363)
102 PF15067 FAM124: FAM124 family 97.8 0.0005 1.1E-08 47.4 9.3 102 26-141 129-235 (236)
103 PF06983 3-dmu-9_3-mt: 3-demet 97.7 0.0031 6.7E-08 39.4 11.8 96 34-142 11-116 (116)
104 KOG0638 4-hydroxyphenylpyruvat 97.4 0.00015 3.2E-09 52.1 3.1 102 21-123 174-291 (381)
105 PF13669 Glyoxalase_4: Glyoxal 96.9 0.005 1.1E-07 37.7 6.2 50 96-145 1-56 (109)
106 PF14507 CppA_C: CppA C-termin 96.0 0.03 6.6E-07 33.9 5.3 90 26-139 6-98 (101)
107 cd08353 Glo_EDI_BRP_like_7 Thi 94.9 0.16 3.6E-06 32.2 6.5 54 24-78 86-140 (142)
108 cd08347 PcpA_C_like C-terminal 94.8 0.23 5E-06 32.5 7.0 51 94-144 1-53 (157)
109 cd08352 Glo_EDI_BRP_like_1 Thi 94.8 0.35 7.6E-06 29.4 7.6 51 94-144 3-58 (125)
110 TIGR03645 glyox_marine lactoyl 94.2 0.39 8.4E-06 31.6 7.1 52 94-145 4-78 (162)
111 cd08342 HPPD_N_like N-terminal 94.0 0.64 1.4E-05 29.4 7.6 59 24-83 68-127 (136)
112 PF13670 PepSY_2: Peptidase pr 94.0 0.3 6.5E-06 28.4 5.6 41 104-144 30-73 (83)
113 KOG2944 Glyoxalase [Carbohydra 94.0 0.37 8E-06 31.6 6.3 53 24-78 114-167 (170)
114 cd07242 Glo_EDI_BRP_like_6 Thi 93.8 0.46 1E-05 29.3 6.6 50 95-145 2-55 (128)
115 cd08346 PcpA_N_like N-terminal 93.7 0.7 1.5E-05 28.2 7.2 50 95-144 2-60 (126)
116 PLN02367 lactoylglutathione ly 93.6 0.56 1.2E-05 33.0 7.2 56 24-81 168-224 (233)
117 cd07235 MRD Mitomycin C resist 93.2 0.59 1.3E-05 28.6 6.3 46 96-141 2-47 (122)
118 cd06587 Glo_EDI_BRP_like This 93.2 0.55 1.2E-05 27.5 6.0 48 97-145 1-51 (112)
119 cd08348 BphC2-C3-RGP6_C_like T 93.0 1 2.2E-05 28.1 7.3 50 95-144 2-54 (134)
120 cd07249 MMCE Methylmalonyl-CoA 92.9 0.82 1.8E-05 28.0 6.7 30 24-54 71-100 (128)
121 cd07245 Glo_EDI_BRP_like_9 Thi 92.5 0.81 1.8E-05 27.1 6.1 50 95-144 1-52 (114)
122 cd07241 Glo_EDI_BRP_like_3 Thi 92.4 1.4 2.9E-05 26.8 7.2 50 95-144 2-56 (125)
123 PF13468 Glyoxalase_3: Glyoxal 92.4 0.23 4.9E-06 33.1 3.8 50 96-146 2-56 (175)
124 PRK11478 putative lyase; Provi 92.1 1.8 3.9E-05 26.6 8.8 54 24-78 74-128 (129)
125 PF06185 YecM: YecM protein; 91.8 2.2 4.8E-05 28.9 7.8 77 24-103 33-114 (185)
126 cd07252 BphC1-RGP6_N_like N-te 91.6 1.8 4E-05 26.5 7.0 47 95-142 3-51 (120)
127 cd07233 Glyoxalase_I Glyoxalas 91.5 1.3 2.8E-05 26.8 6.3 49 96-144 2-58 (121)
128 cd07263 Glo_EDI_BRP_like_16 Th 91.4 1.4 3E-05 26.4 6.3 46 97-142 1-52 (119)
129 cd07255 Glo_EDI_BRP_like_12 Th 91.3 1.8 3.9E-05 26.4 6.9 47 95-143 3-51 (125)
130 PLN03042 Lactoylglutathione ly 91.3 1.7 3.7E-05 29.4 7.0 56 24-81 120-176 (185)
131 PRK10291 glyoxalase I; Provisi 91.0 2.5 5.4E-05 26.2 7.4 57 24-81 64-122 (129)
132 cd07262 Glo_EDI_BRP_like_19 Th 90.3 2.2 4.9E-05 26.0 6.6 48 96-144 2-54 (123)
133 COG3865 Uncharacterized protei 90.1 3.6 7.9E-05 26.7 11.9 99 33-142 13-122 (151)
134 cd08344 MhqB_like_N N-terminal 90.1 1.9 4.1E-05 26.0 6.0 29 94-122 2-30 (112)
135 cd07253 Glo_EDI_BRP_like_2 Thi 89.6 2.4 5.3E-05 25.6 6.4 30 94-123 3-33 (125)
136 cd07250 HPPD_C_like C-terminal 89.6 1.8 3.9E-05 29.4 6.0 52 94-145 3-64 (191)
137 cd07240 ED_TypeI_classII_N N-t 88.5 3.4 7.3E-05 24.8 6.3 38 95-134 3-41 (117)
138 PF00903 Glyoxalase: Glyoxalas 88.1 2.4 5.3E-05 25.6 5.6 27 95-121 2-29 (128)
139 TIGR03081 metmalonyl_epim meth 88.0 3.8 8.2E-05 25.0 6.4 50 95-144 2-55 (128)
140 cd08360 MhqB_like_C C-terminal 87.6 5.1 0.00011 25.1 6.9 49 94-143 3-55 (134)
141 cd07268 Glo_EDI_BRP_like_4 Thi 87.5 6 0.00013 25.8 10.9 73 26-103 2-81 (149)
142 PRK11700 hypothetical protein; 87.0 7.5 0.00016 26.4 9.5 75 24-103 38-119 (187)
143 cd07265 2_3_CTD_N N-terminal d 86.4 5.5 0.00012 24.2 6.5 30 94-123 4-34 (122)
144 cd09012 Glo_EDI_BRP_like_24 Th 86.3 4.8 0.0001 24.6 6.2 26 96-121 2-27 (124)
145 cd07237 BphC1-RGP6_C_like C-te 86.0 7.2 0.00016 25.2 7.7 51 93-143 8-67 (154)
146 cd08363 FosB FosB, a fosfomyci 85.8 5.9 0.00013 24.7 6.5 28 95-122 1-29 (131)
147 TIGR00068 glyox_I lactoylgluta 85.4 5.5 0.00012 25.5 6.3 57 24-81 85-143 (150)
148 cd07239 BphC5-RK37_C_like C-te 84.6 7.2 0.00016 24.9 6.5 27 94-120 4-31 (144)
149 cd07247 SgaA_N_like N-terminal 84.3 6.7 0.00014 23.4 6.6 28 96-123 2-30 (114)
150 PF12681 Glyoxalase_2: Glyoxal 82.1 5.8 0.00012 23.3 5.1 30 23-53 54-83 (108)
151 cd07266 HPCD_N_class_II N-term 82.0 8.9 0.00019 23.2 6.3 30 94-123 4-34 (121)
152 cd08361 PpCmtC_N N-terminal do 81.1 10 0.00022 23.3 6.4 46 95-142 7-54 (124)
153 cd08359 Glo_EDI_BRP_like_22 Th 79.1 11 0.00025 22.6 6.5 25 28-53 69-93 (119)
154 cd08362 BphC5-RrK37_N_like N-t 79.0 11 0.00025 22.5 5.9 29 94-122 3-32 (120)
155 cd07268 Glo_EDI_BRP_like_4 Thi 78.4 12 0.00025 24.5 5.6 50 95-144 2-60 (149)
156 cd08351 ChaP_like ChaP, an enz 77.8 13 0.00029 22.6 6.3 47 95-143 5-52 (123)
157 cd08343 ED_TypeI_classII_C C-t 77.5 14 0.00031 22.8 6.1 48 96-143 1-53 (131)
158 PRK04101 fosfomycin resistance 76.9 16 0.00034 23.0 6.6 29 24-53 62-92 (139)
159 cd09013 BphC-JF8_N_like N-term 75.9 15 0.00032 22.2 6.9 29 94-122 6-35 (121)
160 cd07238 Glo_EDI_BRP_like_5 Thi 75.5 14 0.00031 21.9 7.2 28 26-54 58-85 (112)
161 cd07267 THT_Oxygenase_N N-term 74.7 16 0.00034 21.9 6.9 54 24-79 56-110 (113)
162 cd07257 THT_oxygenase_C The C- 74.4 20 0.00044 23.0 6.8 57 24-80 66-126 (153)
163 cd04883 ACT_AcuB C-terminal AC 74.2 12 0.00026 20.4 4.5 27 96-122 43-71 (72)
164 cd04882 ACT_Bt0572_2 C-termina 74.1 9.8 0.00021 20.2 4.1 25 95-119 40-64 (65)
165 cd08358 Glo_EDI_BRP_like_21 Th 73.5 20 0.00044 22.6 7.4 27 95-121 3-30 (127)
166 PRK11700 hypothetical protein; 73.3 17 0.00037 24.7 5.6 50 95-144 40-98 (187)
167 cd08345 Fosfomycin_RP Fosfomyc 73.2 17 0.00036 21.5 5.5 54 24-78 54-110 (113)
168 cd07251 Glo_EDI_BRP_like_10 Th 72.9 17 0.00038 21.6 5.9 44 98-143 2-46 (121)
169 PF02208 Sorb: Sorbin homologo 72.7 0.95 2.1E-05 23.0 -0.3 26 23-48 9-34 (47)
170 cd08364 FosX FosX, a fosfomyci 72.5 20 0.00044 22.2 6.4 29 24-53 65-95 (131)
171 cd04895 ACT_ACR_1 ACT domain-c 71.8 11 0.00023 21.4 3.8 35 105-139 15-55 (72)
172 cd07244 FosA FosA, a Fosfomyci 71.3 20 0.00044 21.7 6.5 28 95-122 2-30 (121)
173 cd07258 PpCmtC_C C-terminal do 67.9 29 0.00062 22.1 6.8 58 23-80 54-115 (141)
174 cd07243 2_3_CTD_C C-terminal d 67.5 29 0.00063 22.0 6.8 56 24-79 66-125 (143)
175 cd08357 Glo_EDI_BRP_like_18 Th 67.2 25 0.00054 21.1 6.2 27 96-122 1-28 (125)
176 PF14091 DUF4269: Domain of un 65.7 11 0.00023 24.8 3.3 85 29-120 37-132 (152)
177 cd07256 HPCD_C_class_II C-term 64.0 13 0.00029 24.1 3.7 27 94-120 3-30 (161)
178 PF07063 DUF1338: Domain of un 64.0 9.6 0.00021 28.0 3.2 29 92-120 182-216 (302)
179 COG3254 Uncharacterized conser 61.2 31 0.00067 21.1 4.5 34 105-145 26-59 (105)
180 COG3349 Uncharacterized conser 61.1 16 0.00036 28.7 4.1 33 109-141 16-52 (485)
181 PF09142 TruB_C: tRNA Pseudour 60.3 23 0.0005 18.9 3.5 41 104-145 5-45 (56)
182 PRK06704 RNA polymerase factor 59.3 7.1 0.00015 27.4 1.8 42 99-142 183-226 (228)
183 cd08354 Glo_EDI_BRP_like_13 Th 58.3 37 0.00081 20.2 7.1 47 96-143 2-49 (122)
184 PF06185 YecM: YecM protein; 57.4 14 0.0003 25.1 2.9 50 95-144 35-93 (185)
185 cd08350 BLMT_like BLMT, a bleo 57.2 41 0.00088 20.3 5.7 45 97-143 5-49 (120)
186 cd04906 ACT_ThrD-I_1 First of 55.5 31 0.00066 19.9 3.9 26 96-121 42-71 (85)
187 cd07254 Glo_EDI_BRP_like_20 Th 54.5 45 0.00097 19.9 6.4 27 96-122 3-30 (120)
188 cd08349 BLMA_like Bleomycin bi 53.8 43 0.00093 19.5 6.4 26 24-50 57-82 (112)
189 cd07264 Glo_EDI_BRP_like_15 Th 52.8 48 0.0011 19.8 6.8 26 27-53 73-98 (125)
190 KOG4657 Uncharacterized conser 52.7 11 0.00023 26.4 1.8 21 34-54 145-165 (246)
191 cd04908 ACT_Bt0572_1 N-termina 51.7 38 0.00082 18.2 3.9 25 96-120 41-65 (66)
192 cd04897 ACT_ACR_3 ACT domain-c 50.7 38 0.00083 19.3 3.6 36 105-140 15-56 (75)
193 cd07246 Glo_EDI_BRP_like_8 Thi 50.1 53 0.0011 19.5 7.0 29 25-54 68-96 (122)
194 PRK06724 hypothetical protein; 49.9 62 0.0013 20.2 7.1 56 24-79 62-123 (128)
195 cd09011 Glo_EDI_BRP_like_23 Th 48.1 59 0.0013 19.5 6.5 52 25-77 64-117 (120)
196 PF13176 TPR_7: Tetratricopept 47.3 17 0.00037 17.0 1.6 19 32-50 11-29 (36)
197 PF06923 GutM: Glucitol operon 47.3 66 0.0014 19.8 5.3 42 103-145 24-71 (109)
198 PF14907 NTP_transf_5: Unchara 46.8 96 0.0021 21.5 6.0 46 98-144 97-144 (249)
199 PF00379 Chitin_bind_4: Insect 45.4 34 0.00073 17.7 2.7 17 126-142 28-44 (52)
200 PF07494 Reg_prop: Two compone 44.7 28 0.00061 14.8 2.1 13 128-140 8-20 (24)
201 PF05593 RHS_repeat: RHS Repea 43.0 40 0.00087 16.1 3.8 24 122-145 12-35 (38)
202 COG1791 Uncharacterized conser 40.4 90 0.002 21.1 4.5 42 104-145 79-124 (181)
203 TIGR01643 YD_repeat_2x YD repe 40.1 46 0.001 15.9 3.9 23 123-145 13-35 (42)
204 PTZ00330 acetyltransferase; Pr 39.9 41 0.00088 20.9 3.0 26 26-54 116-141 (147)
205 PF15121 TMEM71: TMEM71 protei 39.4 33 0.00072 22.0 2.3 23 111-138 63-85 (149)
206 COG4747 ACT domain-containing 39.3 39 0.00085 21.3 2.6 86 26-122 42-136 (142)
207 cd04885 ACT_ThrD-I Tandem C-te 39.1 55 0.0012 17.8 3.1 25 95-119 39-66 (68)
208 PF10706 Aminoglyc_resit: Amin 38.8 97 0.0021 20.8 4.5 41 97-140 46-86 (174)
209 PRK10234 DNA-binding transcrip 38.6 1E+02 0.0022 19.4 5.6 45 102-146 24-73 (118)
210 PF02952 Fucose_iso_C: L-fucos 38.1 45 0.00097 21.2 2.9 27 26-52 113-139 (142)
211 COG3102 Uncharacterized protei 37.7 1.3E+02 0.0028 20.3 8.2 83 24-110 38-127 (185)
212 COG0456 RimI Acetyltransferase 37.7 43 0.00094 21.6 2.9 29 27-56 127-156 (177)
213 KOG0174 20S proteasome, regula 37.6 1.2E+02 0.0025 21.1 4.8 77 5-82 136-213 (224)
214 PF08445 FR47: FR47-like prote 36.4 69 0.0015 18.4 3.3 22 31-53 60-81 (86)
215 PF03975 CheD: CheD chemotacti 36.0 74 0.0016 19.6 3.6 38 102-139 63-103 (114)
216 PF07411 DUF1508: Domain of un 35.9 48 0.001 17.1 2.3 17 124-140 3-19 (49)
217 KOG1249 Predicted GTPases [Gen 33.8 77 0.0017 25.5 4.0 28 25-52 432-459 (572)
218 PF14696 Glyoxalase_5: Hydroxy 33.2 1.4E+02 0.003 19.3 6.1 56 24-81 72-128 (139)
219 PF03432 Relaxase: Relaxase/Mo 32.3 1.1E+02 0.0025 21.1 4.4 36 101-136 183-218 (242)
220 PF11141 DUF2914: Protein of u 32.3 93 0.002 17.1 3.5 22 123-144 42-63 (66)
221 PF00583 Acetyltransf_1: Acety 31.9 47 0.001 18.2 2.1 25 25-50 58-83 (83)
222 PRK13498 chemoreceptor glutami 31.7 1.1E+02 0.0024 20.4 4.1 39 100-138 112-153 (167)
223 PRK13490 chemoreceptor glutami 31.5 1.1E+02 0.0024 20.3 4.0 37 102-138 111-150 (162)
224 PRK09437 bcp thioredoxin-depen 31.5 1.4E+02 0.003 18.9 5.8 49 95-143 65-137 (154)
225 PRK13495 chemoreceptor glutami 31.5 1.1E+02 0.0025 20.2 4.0 38 102-139 104-144 (159)
226 PF05881 CNPase: 2',3'-cyclic 31.3 43 0.00093 23.4 2.0 70 35-107 82-154 (235)
227 PF12512 DUF3717: Protein of u 31.0 18 0.00039 20.5 0.2 15 31-45 4-18 (71)
228 PF13986 DUF4224: Domain of un 31.0 82 0.0018 16.1 2.9 18 108-125 20-37 (47)
229 PRK10146 aminoalkylphosphonic 30.4 58 0.0013 20.1 2.5 28 25-53 109-137 (144)
230 TIGR03079 CH4_NH3mon_ox_B meth 30.3 2.1E+02 0.0046 21.9 5.6 44 96-141 346-389 (399)
231 PF12687 DUF3801: Protein of u 30.2 1.5E+02 0.0032 20.5 4.6 43 93-135 32-79 (204)
232 PRK10140 putative acetyltransf 29.7 83 0.0018 19.8 3.2 31 25-56 112-143 (162)
233 cd04909 ACT_PDH-BS C-terminal 29.7 61 0.0013 17.4 2.2 21 98-118 45-68 (69)
234 PF13756 Stimulus_sens_1: Stim 28.9 65 0.0014 19.8 2.4 14 126-139 18-31 (112)
235 cd00034 ChSh Chromo Shadow Dom 28.8 39 0.00085 17.8 1.3 17 33-49 37-53 (54)
236 PRK13494 chemoreceptor glutami 28.6 1.4E+02 0.003 19.9 4.0 37 102-138 113-152 (163)
237 smart00300 ChSh Chromo Shadow 28.5 42 0.00092 18.2 1.4 18 33-50 43-60 (61)
238 PF00585 Thr_dehydrat_C: C-ter 28.4 1.3E+02 0.0029 17.6 4.6 28 94-121 50-80 (91)
239 PF14133 DUF4300: Domain of un 28.3 1.4E+02 0.0031 21.4 4.3 36 105-140 150-185 (250)
240 COG1225 Bcp Peroxiredoxin [Pos 28.0 1.8E+02 0.004 19.2 5.9 49 94-142 64-136 (157)
241 PF00578 AhpC-TSA: AhpC/TSA fa 27.8 90 0.0019 18.7 3.0 46 94-139 59-122 (124)
242 PF13508 Acetyltransf_7: Acety 27.7 48 0.001 18.3 1.6 14 37-51 66-79 (79)
243 cd03008 TryX_like_RdCVF Trypar 27.6 1.8E+02 0.0039 18.9 5.8 16 125-140 112-127 (146)
244 PF12142 PPO1_DWL: Polyphenol 27.6 90 0.0019 16.7 2.5 16 128-143 11-26 (54)
245 PHA00450 host dGTPase inhibito 27.3 1.4E+02 0.0029 17.4 3.7 39 104-142 11-56 (85)
246 PHA02540 61 DNA primase; Provi 27.3 1.5E+02 0.0032 22.4 4.4 43 100-143 148-190 (337)
247 PRK13488 chemoreceptor glutami 27.2 1.5E+02 0.0032 19.6 4.0 37 102-138 106-145 (157)
248 COG1654 BirA Biotin operon rep 27.1 83 0.0018 18.2 2.5 22 103-124 34-55 (79)
249 PF11823 DUF3343: Protein of u 26.7 1.2E+02 0.0027 16.8 4.5 23 98-120 43-67 (73)
250 PRK13497 chemoreceptor glutami 26.7 1.6E+02 0.0034 20.1 4.1 38 102-139 111-151 (184)
251 PRK10314 putative acyltransfer 26.3 84 0.0018 20.3 2.8 17 37-54 118-134 (153)
252 COG3603 Uncharacterized conser 26.3 88 0.0019 19.8 2.6 25 96-120 103-127 (128)
253 PRK03094 hypothetical protein; 26.2 1.4E+02 0.0031 17.3 5.2 41 100-140 4-50 (80)
254 KOG1494 NAD-dependent malate d 26.1 1.3E+02 0.0028 22.3 3.8 75 29-122 171-245 (345)
255 COG5397 Uncharacterized conser 26.1 75 0.0016 23.3 2.6 47 98-144 161-211 (349)
256 PF07233 DUF1425: Protein of u 25.9 68 0.0015 19.0 2.1 15 126-140 43-57 (94)
257 TIGR02382 wecD_rffC TDP-D-fuco 25.9 83 0.0018 21.0 2.8 28 25-53 156-184 (191)
258 smart00671 SEL1 Sel1-like repe 25.8 69 0.0015 14.3 1.8 14 33-46 18-31 (36)
259 PF12566 DUF3748: Protein of u 25.7 78 0.0017 19.8 2.3 36 108-143 48-86 (122)
260 PF07566 DUF1543: Domain of Un 25.6 59 0.0013 17.0 1.6 22 96-117 6-28 (52)
261 PF10922 DUF2745: Protein of u 25.5 1.5E+02 0.0033 17.4 3.7 36 104-139 11-53 (85)
262 PRK13491 chemoreceptor glutami 25.4 1.7E+02 0.0036 20.3 4.1 37 103-139 115-154 (199)
263 TIGR00318 cyaB adenylyl cyclas 25.2 1.6E+02 0.0036 19.5 4.0 22 98-119 6-27 (174)
264 cd01205 WASP WASP-type EVH1 do 24.7 1.2E+02 0.0026 18.6 3.0 21 27-47 82-102 (105)
265 PRK10975 TDP-fucosamine acetyl 24.6 1.1E+02 0.0023 20.4 3.1 29 25-54 159-188 (194)
266 PRK13493 chemoreceptor glutami 24.6 1.7E+02 0.0036 20.5 4.0 36 103-138 139-177 (213)
267 TIGR00288 conserved hypothetic 24.5 2.2E+02 0.0048 18.9 4.4 27 94-120 105-133 (160)
268 KOG2465 Uncharacterized conser 24.4 71 0.0015 23.7 2.2 21 94-114 168-188 (390)
269 PF03698 UPF0180: Uncharacteri 24.4 1.6E+02 0.0034 17.1 4.9 41 100-140 4-50 (80)
270 COG1724 Predicted RNA binding 24.0 1.4E+02 0.0031 16.6 5.0 36 104-141 8-43 (66)
271 PRK13487 chemoreceptor glutami 23.9 1.8E+02 0.0039 20.1 4.0 38 101-138 125-165 (201)
272 cd09030 DUF1425 Putative perip 23.7 59 0.0013 19.4 1.5 16 126-141 51-66 (101)
273 PF14527 LAGLIDADG_WhiA: WhiA 23.6 1.5E+02 0.0033 17.5 3.3 40 96-135 22-65 (93)
274 PRK09732 hypothetical protein; 23.3 2.1E+02 0.0046 18.3 5.3 33 105-145 16-48 (134)
275 smart00459 Sorb Sorbin homolog 23.2 45 0.00098 17.4 0.8 14 35-48 24-37 (50)
276 cd03012 TlpA_like_DipZ_like Tl 23.2 1.9E+02 0.0041 17.6 5.9 40 104-143 72-123 (126)
277 PRK12332 tsf elongation factor 22.9 1.4E+02 0.0031 20.6 3.4 39 104-142 32-75 (198)
278 PRK10514 putative acetyltransf 22.8 1.7E+02 0.0038 18.0 3.7 20 36-56 109-128 (145)
279 PF03428 RP-C: Replication pro 22.8 2.3E+02 0.005 19.2 4.3 41 102-142 85-125 (177)
280 cd04886 ACT_ThrD-II-like C-ter 22.7 1.3E+02 0.0028 15.7 3.9 25 96-120 45-72 (73)
281 PF01483 P_proprotein: Proprot 22.6 1.5E+02 0.0032 16.9 3.1 25 121-145 12-36 (87)
282 PF08379 Bact_transglu_N: Bact 22.5 1.6E+02 0.0035 16.6 4.4 20 126-145 47-66 (82)
283 PF01393 Chromo_shadow: Chromo 22.1 59 0.0013 17.5 1.2 17 34-50 41-57 (58)
284 COG1871 CheD Chemotaxis protei 21.9 2.6E+02 0.0056 18.7 4.5 39 100-138 111-152 (164)
285 COG1437 CyaB Adenylate cyclase 21.7 2.7E+02 0.0059 18.9 7.8 78 26-119 78-162 (178)
286 PF14883 GHL13: Hypothetical g 21.5 1.5E+02 0.0032 21.9 3.3 17 104-120 18-34 (294)
287 PF02630 SCO1-SenC: SCO1/SenC; 21.3 89 0.0019 20.7 2.2 19 126-144 155-173 (174)
288 PRK09491 rimI ribosomal-protei 21.1 1.5E+02 0.0032 18.4 3.1 29 25-54 96-125 (146)
289 PHA01735 hypothetical protein 20.8 86 0.0019 17.7 1.6 18 103-120 33-50 (76)
290 PRK13489 chemoreceptor glutami 20.7 2.3E+02 0.0049 20.2 4.1 37 102-138 124-163 (233)
291 PRK10382 alkyl hydroperoxide r 20.5 2.8E+02 0.0062 18.7 6.4 50 95-144 66-137 (187)
292 PRK09831 putative acyltransfer 20.4 1E+02 0.0023 19.3 2.3 19 37-56 110-128 (147)
293 PRK10562 putative acetyltransf 20.2 2.3E+02 0.005 17.6 5.0 26 29-55 100-126 (145)
294 PRK11657 dsbG disulfide isomer 20.1 2.6E+02 0.0055 19.9 4.4 37 103-139 21-70 (251)
No 1
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.91 E-value=7.6e-23 Score=132.35 Aligned_cols=121 Identities=21% Similarity=0.343 Sum_probs=90.6
Q ss_pred eeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCC-----------CCceEEEEEe--CCeEEEEEeeCCCCCCCC--
Q 032174 23 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWV--GAEMIHLMELPNPDPLSG-- 87 (146)
Q Consensus 23 ~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~-----------~~~~~~~~~~--~~~~~~l~~~~~~~~~~~-- 87 (146)
+.+++||+|.|+|++++++||++ |||++..+..... .....+++.. ++..++|+....+.....
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCC
Confidence 46899999999999999999998 9999876543211 1123344443 456888887654432211
Q ss_pred -CCCCCCCccEEEEEeCCHHHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEee
Q 032174 88 -RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 88 -~~~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~~ 144 (146)
....+.+..|+||.|+|+++++++|+++|+++..++ .+.+.+|++||||+.|||+|.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 123345678999999999999999999999987543 467889999999999999984
No 2
>PRK11478 putative lyase; Provisional
Probab=99.91 E-value=1.7e-22 Score=128.53 Aligned_cols=123 Identities=23% Similarity=0.351 Sum_probs=88.2
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-CCeEEEEEeeCCCCCCCCCCCCCCCccEEE
Q 032174 21 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 99 (146)
Q Consensus 21 ~~~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~ 99 (146)
+.+.+++||+|.|+|++++++||+++||+++...............+.. ++..++++..+........ ....+..|++
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~-~~~~g~~hi~ 80 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSR-PEACGLRHLA 80 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCC-CCCCceeEEE
Confidence 4578899999999999999999999999998643221111101112323 4457777765433221111 1234568999
Q ss_pred EEeCCHHHHHHHHHHCCCeEecc----CCCceEEEEECCCCCeEEEEee
Q 032174 100 IAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 100 ~~v~d~~~~~~~l~~~G~~~~~~----~~g~~~~~~~DpdG~~ie~~~~ 144 (146)
|.|+|+++++++|+++|+++... ..+.+.+|++|||||.|||+|.
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEeC
Confidence 99999999999999999997643 2467889999999999999873
No 3
>PLN02367 lactoylglutathione lyase
Probab=99.91 E-value=1.6e-22 Score=138.79 Aligned_cols=121 Identities=16% Similarity=0.207 Sum_probs=94.2
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeC-------------------CeEEEEEeeCCCCC-
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-------------------AEMIHLMELPNPDP- 84 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~l~~~~~~~~- 84 (146)
.+.|++|+|+|++++++||+++||+++..+...+...+..+|+..+ +..++|......+.
T Consensus 75 ~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~~ 154 (233)
T PLN02367 75 IMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTESD 154 (233)
T ss_pred EEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCcc
Confidence 4899999999999999999999999998877766666677777431 34788877555432
Q ss_pred -CCCCCC----CCCCccEEEEEeCCHHHHHHHHHHCCCeEeccCC---CceEEEEECCCCCeEEEEeec
Q 032174 85 -LSGRPE----HGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS---GRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 85 -~~~~~~----~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~---g~~~~~~~DpdG~~ie~~~~~ 145 (146)
...... ...|..|+||.|+|+++++++|+++|+++...+. ..+.+|++|||||+|||+|.+
T Consensus 155 ~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 155 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred ccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence 111111 1246899999999999999999999999875442 246789999999999999975
No 4
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.90 E-value=7.1e-22 Score=132.65 Aligned_cols=122 Identities=17% Similarity=0.226 Sum_probs=91.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-------------------CCeEEEEEeeCCCCC
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-------------------GAEMIHLMELPNPDP 84 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~ 84 (146)
-++.|++|+|.|++++++||+++|||++..+...+...+..+++.. ++..++|+.......
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 3699999999999999999999999999887654444445555532 235888887544322
Q ss_pred CC-----C-CCCCCCCccEEEEEeCCHHHHHHHHHHCCCeEeccCC---CceEEEEECCCCCeEEEEeec
Q 032174 85 LS-----G-RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS---GRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 85 ~~-----~-~~~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~---g~~~~~~~DpdG~~ie~~~~~ 145 (146)
.+ . ......+..|++|.|+|+++++++|+++|+.+...+. +.+.+|++|||||+|||++..
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence 10 0 0111246799999999999999999999999875431 346678899999999999875
No 5
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.89 E-value=1.1e-21 Score=123.72 Aligned_cols=119 Identities=27% Similarity=0.436 Sum_probs=86.8
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-CCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEe
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 102 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v 102 (146)
.+++||+|.|.|++++++||+++||++................+.. ++..++++...........+ ...+..|++|.|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~-~~~g~~h~~~~v 80 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSYP-EACGLRHLAFSV 80 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCC-cCCCceEEEEEe
Confidence 5799999999999999999999999998764332221111122333 45677777654432211112 234568999999
Q ss_pred CCHHHHHHHHHHCCCeEecc----CCCceEEEEECCCCCeEEEEe
Q 032174 103 RDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 103 ~d~~~~~~~l~~~G~~~~~~----~~g~~~~~~~DpdG~~ie~~~ 143 (146)
+|+++++++|+++|+++... ..+.+.+|++||+||+|||+|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 81 EDIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CCHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 99999999999999998643 245678999999999999986
No 6
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.89 E-value=5.5e-22 Score=127.70 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=88.7
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCC--CCCCCCCccEEEEEeC
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAIR 103 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~hl~~~v~ 103 (146)
++|+.|.|+|++++++||+++|||++..+.... ....+++..++..+.+........... ....+.+..|++|.|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~ 78 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVD 78 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeC
Confidence 589999999999999999999999988754422 123344555666777665333221110 1123456789999999
Q ss_pred CHHHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEeecC
Q 032174 104 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVDG 146 (146)
Q Consensus 104 d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~~~~ 146 (146)
|+++.+++|+++|+++..++ .+.+.++++||||++|||+|.++
T Consensus 79 Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 79 DAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred CHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecCC
Confidence 99999999999999986543 45688999999999999999753
No 7
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.89 E-value=1.6e-21 Score=129.03 Aligned_cols=122 Identities=22% Similarity=0.263 Sum_probs=89.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeecccc----CC--------------CCCCceEEEEEeC-CeEEEEEeeCCCCC
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEAR----PH--------------DKLPYRGAWLWVG-AEMIHLMELPNPDP 84 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~----~~--------------~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 84 (146)
.+++||+|.|+|++++++||+++|||++..+. .. ....+..+++..+ +..++|+.......
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 57999999999999999999999999875321 10 0112345666654 45799998765433
Q ss_pred CCCCC-CCCCCccEEEEEeCCHHHHHHHHHHCCCeEeccC-----C---CceEEEEECCCCCeEEEEeec
Q 032174 85 LSGRP-EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK-----S---GRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 85 ~~~~~-~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~-----~---g~~~~~~~DpdG~~ie~~~~~ 145 (146)
+...+ ..+.+..|+||.|+|+++++++|+++|+.+.... . +.+.+|++|||||+|||++++
T Consensus 83 ~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 83 PEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 22221 2245679999999999999999999998753221 1 247899999999999999875
No 8
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.89 E-value=1.1e-21 Score=123.88 Aligned_cols=117 Identities=23% Similarity=0.318 Sum_probs=84.7
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeC-CeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeC
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 103 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~ 103 (146)
+++|+.|.|+|++++++||+++||+++.............+|+..+ +..++|+..+...... ......+..|+||.|+
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~hi~f~v~ 79 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSP-NEGERTGWAHLAFSVG 79 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCc-ccCCCCceEEEEEECC
Confidence 4789999999999999999999999986543222223345666664 4578887644322111 1122245689999996
Q ss_pred ---CHHHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEE
Q 032174 104 ---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFT 142 (146)
Q Consensus 104 ---d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~ 142 (146)
++++++++|+++|+++...+ .+.+.++++|||||.|||.
T Consensus 80 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 80 SKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 58999999999999987533 3456688999999999983
No 9
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.88 E-value=3.1e-21 Score=124.61 Aligned_cols=113 Identities=23% Similarity=0.361 Sum_probs=87.8
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEE
Q 032174 22 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 101 (146)
Q Consensus 22 ~~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 101 (146)
++.+++|+.|.|+|++++++||+++||+++..+.. ..+++..++..+.+...+... ......+..|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g~~l~l~~~~~~~----~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNGLWIALNEEKDIP----RNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCCeEEEeeccCCCC----CccCCCCeeEEEEE
Confidence 46789999999999999999999999999876422 346677777777765432111 11123445799999
Q ss_pred eC--CHHHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEee
Q 032174 102 IR--DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 102 v~--d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~~ 144 (146)
++ |+++++++|+++|+++...+ .+++.+|++|||||+|||.+.
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~ 119 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTG 119 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 98 99999999999999985432 467999999999999999864
No 10
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.87 E-value=6.2e-21 Score=122.06 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=85.0
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCC-ceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEE
Q 032174 22 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLP-YRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 100 (146)
Q Consensus 22 ~~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 100 (146)
++.+++|++|.|+|++++++||+++||++...+....... ....++..++..+++...... ...+..|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~--------~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDSL--------QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCCCC--------CCCCceEEEE
Confidence 3678999999999999999999999999876543321111 112334456667777532211 1124689999
Q ss_pred EeC--CHHHHHHHHHHCCCeEeccC---C-CceEEEEECCCCCeEEEEee
Q 032174 101 AIR--DVSKLKMILDKAGISYTLSK---S-GRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 101 ~v~--d~~~~~~~l~~~G~~~~~~~---~-g~~~~~~~DpdG~~ie~~~~ 144 (146)
.|+ ++++++++|+++|+++..+. . .++.+|++|||||.|||.+.
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecC
Confidence 998 79999999999999986542 2 46899999999999999864
No 11
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.87 E-value=7.5e-21 Score=119.50 Aligned_cols=114 Identities=21% Similarity=0.315 Sum_probs=84.7
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCC----eEEEEEeeCCCCCCCCCCCCCCCccEEEEE
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 101 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 101 (146)
|.|++|.|+|++++++||+++||+++.............+++..++ ..+++........ ....+.+..|++|.
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~i~~~ 77 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEE---PYDNGNGFGHLAFA 77 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCC---CcCCCCCeEEEEEE
Confidence 5799999999999999999999999876543332233446666543 4566554332211 11222356899999
Q ss_pred eCCHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCeEEEE
Q 032174 102 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFT 142 (146)
Q Consensus 102 v~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ie~~ 142 (146)
++|+++++++++++|+.+...+ .+.+.+|++|||||+|||+
T Consensus 78 v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 78 VDDVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred eCCHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 9999999999999999987654 3567889999999999985
No 12
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.87 E-value=7.5e-21 Score=124.30 Aligned_cols=122 Identities=23% Similarity=0.310 Sum_probs=85.7
Q ss_pred CceeeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCe----EEEEEeeCCCCCCCCCCCCCCCc
Q 032174 20 DYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRD 95 (146)
Q Consensus 20 ~~~~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~ 95 (146)
.....+++|+.|.|+|++++++||+++|||++..+..........+++..++. .+++..... .. ....+.+.
T Consensus 12 ~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~--~~~~~~g~ 87 (150)
T TIGR00068 12 KTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWG--TE--KYDLGNGF 87 (150)
T ss_pred ccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCC--CC--cccCCCce
Confidence 34567899999999999999999999999998765433222223344544321 233222111 11 11223456
Q ss_pred cEEEEEeCCHHHHHHHHHHCCCeEeccC-----CCceEEEEECCCCCeEEEEeec
Q 032174 96 RHTCIAIRDVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
.|++|.|+|+++++++|.++|+++...+ .+.+.+|++|||||+|||++..
T Consensus 88 ~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 88 GHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred eEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 8999999999999999999999876433 2346789999999999999865
No 13
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.87 E-value=3.4e-21 Score=122.17 Aligned_cols=119 Identities=20% Similarity=0.400 Sum_probs=87.3
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCC--CCCCCCCccEEEEEe
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 102 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~hl~~~v 102 (146)
+++|+.|.|+|++++++||+++||++..............+++..++..++|........... ......+..|+||.|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v 80 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEV 80 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEc
Confidence 478999999999999999999999998764332233345667777778888876432221110 011234567999999
Q ss_pred CCHHHHHHHHHHCCCeEecc-C----CCceEEEE--ECCCCCeEEEEe
Q 032174 103 RDVSKLKMILDKAGISYTLS-K----SGRPAIFT--RDPDANALEFTQ 143 (146)
Q Consensus 103 ~d~~~~~~~l~~~G~~~~~~-~----~g~~~~~~--~DpdG~~ie~~~ 143 (146)
+|+++++++|.++|+++..+ + .|.+.+|+ +||||++||++|
T Consensus 81 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 81 DDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 99999999999999998643 2 23455666 699999999976
No 14
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.87 E-value=6.7e-21 Score=117.87 Aligned_cols=110 Identities=40% Similarity=0.745 Sum_probs=86.0
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCe-EEEEEeeCCCCCCCCCCCCCCCccEEEEEeCC
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 104 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d 104 (146)
|+|++|.|+|++++++||+++||+++..+.... ...+|+..++. .+++...+..... +..+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDGPQLHLIEEDPPDAL---PEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCCcEEEEEecCCCccc---cCCCcccceEEEEeCC
Confidence 589999999999999999999999987643322 13466777655 7777766554321 2233456899999999
Q ss_pred HHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCeEEE
Q 032174 105 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEF 141 (146)
Q Consensus 105 ~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ie~ 141 (146)
+++++++++++|+.+...+ .+.+.+++.||+||+|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 9999999999999986643 467889999999999996
No 15
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.87 E-value=1.4e-20 Score=123.95 Aligned_cols=113 Identities=17% Similarity=0.235 Sum_probs=84.7
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeC---CeEEEEEeeCCCCCCCCCCCCCCCccEEEEE
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 101 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 101 (146)
+++||+|.|+|++++++||+++|||++..+.. ....+...+ +..++++....... ......+..|++|.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~l~Hiaf~ 72 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG-----DRVRLEEGGGGPGAVVDVLEEPDQPR---GRPGAGTVHHVAFR 72 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC-----CEEEEEecCCCCCCEEEEEeCCCCCC---CcccCCceEEEEEE
Confidence 58999999999999999999999999876543 123334433 56777777432111 11122456899999
Q ss_pred eCC---HHHHHHHHHHCCCeEeccC--CCceEEEEECCCCCeEEEEeec
Q 032174 102 IRD---VSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 102 v~d---~~~~~~~l~~~G~~~~~~~--~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
|+| +++++++|+++|+.+.... .+.+++|++|||||.|||++..
T Consensus 73 v~d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 73 VPDDEELEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CCCHHHHHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECC
Confidence 997 9999999999999864432 3457899999999999999865
No 16
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.87 E-value=2.7e-20 Score=117.27 Aligned_cols=117 Identities=21% Similarity=0.373 Sum_probs=87.6
Q ss_pred eeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEe
Q 032174 23 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 102 (146)
Q Consensus 23 ~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v 102 (146)
+.+++|+.|.|+|++++++||+++||++.....+.. ...++..++..+++........+ .......+..|++|.+
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~hi~~~~ 75 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV----GRKALRFGSQKINLHPVGGEFEP-AAGSPGPGSDDLCLIT 75 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC----CceEEEeCCEEEEEecCCCccCc-CccCCCCCCceEEEEe
Confidence 467999999999999999999999999988754321 23456666677777664432211 1112334568999999
Q ss_pred CC-HHHHHHHHHHCCCeEeccC-------CCceEEEEECCCCCeEEEEee
Q 032174 103 RD-VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 103 ~d-~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DpdG~~ie~~~~ 144 (146)
++ +++++++|.++|+++...+ .+++.+|+.|||||+||+.++
T Consensus 76 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 76 EPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred cccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 84 9999999999999876432 235789999999999999875
No 17
>PRK10291 glyoxalase I; Provisional
Probab=99.86 E-value=9.1e-21 Score=120.86 Aligned_cols=112 Identities=21% Similarity=0.347 Sum_probs=80.5
Q ss_pred EEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCC----eEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCCH
Q 032174 30 GILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 105 (146)
Q Consensus 30 ~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d~ 105 (146)
+|.|+|++++++||+++|||++..+...+...+..+++..++ ..+++...... .....+.+..|+||.|+|+
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~g~~~~hlaf~V~d~ 76 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGV----DKYELGTAYGHIALSVDNA 76 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCC----CCCcCCCCeeEEEEEeCCH
Confidence 478999999999999999999877655444445566665543 13444321111 1112334678999999999
Q ss_pred HHHHHHHHHCCCeEeccC----CC-ceEEEEECCCCCeEEEEeec
Q 032174 106 SKLKMILDKAGISYTLSK----SG-RPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 106 ~~~~~~l~~~G~~~~~~~----~g-~~~~~~~DpdG~~ie~~~~~ 145 (146)
++++++|+++|+.+...+ .+ .+.+|+.|||||+|||++..
T Consensus 77 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 77 AEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred HHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 999999999999876432 23 35678999999999999854
No 18
>PLN02300 lactoylglutathione lyase
Probab=99.86 E-value=1.6e-20 Score=134.64 Aligned_cols=123 Identities=24% Similarity=0.314 Sum_probs=90.2
Q ss_pred CCceeeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCe----EEEEEeeCCCCCCCCCCCCCCC
Q 032174 19 IDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGR 94 (146)
Q Consensus 19 ~~~~~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~ 94 (146)
+.+.+.++.|++|.|+|++++++||+++|||++..+...+......+|+..++. .+++..... . .....+.+
T Consensus 18 ~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~--~--~~~~~~~g 93 (286)
T PLN02300 18 PKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYG--V--DKYDIGTG 93 (286)
T ss_pred CccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCC--C--CccccCCC
Confidence 446789999999999999999999999999998765433333334566655421 344432211 1 11123356
Q ss_pred ccEEEEEeCCHHHHHHHHHHCCCeEeccC----C-CceEEEEECCCCCeEEEEeec
Q 032174 95 DRHTCIAIRDVSKLKMILDKAGISYTLSK----S-GRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~~G~~~~~~~----~-g~~~~~~~DpdG~~ie~~~~~ 145 (146)
..|++|.|+|+++++++|+++|+++...+ . +.+.+|++|||||+|||+++.
T Consensus 94 ~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~ 149 (286)
T PLN02300 94 FGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRG 149 (286)
T ss_pred ccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCC
Confidence 78999999999999999999999886543 2 346789999999999999875
No 19
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.86 E-value=1.7e-20 Score=121.74 Aligned_cols=114 Identities=17% Similarity=0.253 Sum_probs=80.3
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCC-ceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEE
Q 032174 21 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLP-YRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 99 (146)
Q Consensus 21 ~~~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~ 99 (146)
+.+.+|+|++|.|+|++++++||+++|||++..+...+... ...+|+..+.. .+.+.... .+ ..+..|+|
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-~h~~~~~~------~~--~~~~~Hia 72 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-PHDIAFVG------GP--DGKLHHFS 72 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-cceEEEec------CC--CCCceEEE
Confidence 34678999999999999999999999999976543221111 12455554332 22222111 01 14568999
Q ss_pred EEeCCHHH---HHHHHHHCCCeEeccC-----CCceEEEEECCCCCeEEEEe
Q 032174 100 IAIRDVSK---LKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 100 ~~v~d~~~---~~~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie~~~ 143 (146)
|.|+|+++ +.++|+++|+++...+ .+.+.+|++|||||+||+++
T Consensus 73 f~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 73 FFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred EEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 99998887 5689999999986432 23578999999999999975
No 20
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.86 E-value=1.5e-20 Score=120.28 Aligned_cols=110 Identities=23% Similarity=0.399 Sum_probs=85.0
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeC--
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 103 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~-- 103 (146)
|+||.|.|+|++++++||+++||+++....+ ..+++..++.++.+...+... .....++..|++|.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~~~l~l~~~~~~~----~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGGTWLALNEEPDIP----RNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCceEEEEEccCCCC----cCCcCccceEEEEEecHH
Confidence 5899999999999999999999999876432 234566777777775543211 1111245689999998
Q ss_pred CHHHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEeec
Q 032174 104 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 104 d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
|+++++++|++.|+.+..++ .+++.+|+.|||||+|||.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCc
Confidence 59999999999999975432 3678999999999999998764
No 21
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.86 E-value=4.4e-20 Score=122.62 Aligned_cols=118 Identities=22% Similarity=0.358 Sum_probs=83.1
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEE
Q 032174 21 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 100 (146)
Q Consensus 21 ~~~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 100 (146)
|.+.+|+|++|.|+|++++++||+++|||++..............|+..++....+........ ..++..|+||
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~------~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPAG------ARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCCC------CCCCceEEEE
Confidence 5688999999999999999999999999998754332222223466666443222222211110 1134689999
Q ss_pred EeCC---HHHHHHHHHHCCCeEeccC-----CCceEEEEECCCCCeEEEEee
Q 032174 101 AIRD---VSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 101 ~v~d---~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie~~~~ 144 (146)
.|+| +++++++|+++|+++...+ ...+.+|++|||||+|||.+.
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 9985 5578899999999975332 123468999999999999886
No 22
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.85 E-value=2.3e-19 Score=113.19 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=84.1
Q ss_pred EEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCCHHHH
Q 032174 29 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 108 (146)
Q Consensus 29 v~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d~~~~ 108 (146)
..|.|+|++++++||+++||+++....+........+.+..++..+.+.................+..|++|.|+|++++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~~ 82 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDAH 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECCHHHH
Confidence 46889999999999999999999875432222223445666776666655443221110112223457999999999999
Q ss_pred HHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEee
Q 032174 109 KMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 109 ~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~~ 144 (146)
+++|+++|+++..++ .|.+.++++|||||+|+|.++
T Consensus 83 ~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 83 YERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEecC
Confidence 999999999987543 467889999999999999864
No 23
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.85 E-value=1.6e-19 Score=114.48 Aligned_cols=109 Identities=18% Similarity=0.280 Sum_probs=81.7
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEE
Q 032174 21 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 100 (146)
Q Consensus 21 ~~~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 100 (146)
.++.+|.|+.|.|+|++++++||+++|||++..+.. ..+|+..++....+...... .+..|++|
T Consensus 2 ~~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~~~~i~l~~~~----------~~~~~iaf 65 (124)
T cd08361 2 IELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDARDHTLVYIEGD----------PAEQASGF 65 (124)
T ss_pred ceEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCccEEEEEEeCC----------CceEEEEE
Confidence 467899999999999999999999999999876432 24667665332222221111 12478999
Q ss_pred EeCC---HHHHHHHHHHCCCeEeccC-------CCceEEEEECCCCCeEEEEeec
Q 032174 101 AIRD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 101 ~v~d---~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
+|++ +++++++|+++|+++...+ .+.+.+|+.|||||.||++..+
T Consensus 66 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 66 ELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred EECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 9985 9999999999999986532 2356789999999999998765
No 24
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.85 E-value=2.2e-19 Score=113.52 Aligned_cols=113 Identities=28% Similarity=0.369 Sum_probs=84.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCC--eEEEEEeeCCCCCCCCCCCCCCCccEEEEE
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 101 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 101 (146)
++|+|+.|.|+|++++++||+++|||++....+ ..+++..++ ..+.+...+... .......+..|++|.
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~~~~~l~l~~~~~~~---~~~~~~~~~~hi~f~ 71 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGGKRPLLVLEEDPDAP---PAPPGATGLYHFAIL 71 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCCCeEEEEEEeCCCCC---cccCCCCcEEEEEEE
Confidence 368999999999999999999999999987632 246666655 355555443321 112223456899999
Q ss_pred eC---CHHHHHHHHHHCCCeEeccC--CCceEEEEECCCCCeEEEEeec
Q 032174 102 IR---DVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 102 v~---d~~~~~~~l~~~G~~~~~~~--~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
|+ ++++++++|+++|+.+..+. ...+.+|+.|||||+|||.+.-
T Consensus 72 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 72 LPSRADLAAALRRLIELGIPLVGASDHLVSEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred CCCHHHHHHHHHHHHHcCCceeccccccceeEEEEECCCCCEEEEEEec
Confidence 97 58999999999999876433 2347899999999999998754
No 25
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.85 E-value=1.2e-19 Score=114.73 Aligned_cols=106 Identities=21% Similarity=0.318 Sum_probs=80.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-CCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEe
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 102 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v 102 (146)
.+++|+.|.|+|++++++||+++||++...... ..+++.. ++..+.+..... . .+..|++|.+
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~l~~~~~~~-~---------~~~~h~a~~v 66 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPFG------PFAVVKLDNGVSLDFAQPDG-E---------IPPQHYAFLV 66 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC------CEEEEEcCCCcEEEEecCCC-C---------CCcceEEEEe
Confidence 578999999999999999999999999876321 1233333 334555443211 1 2248999998
Q ss_pred C--CHHHHHHHHHHCCCeEecc-----------CCCceEEEEECCCCCeEEEEeec
Q 032174 103 R--DVSKLKMILDKAGISYTLS-----------KSGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 103 ~--d~~~~~~~l~~~G~~~~~~-----------~~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
+ |+++++++|+++|+++... ..+.+.+|++|||||.|||++.|
T Consensus 67 ~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 67 SEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 7 6999999999999997432 24679999999999999999875
No 26
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.85 E-value=9.8e-20 Score=114.62 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=76.2
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCC
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 104 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d 104 (146)
++.++.|.|+|++++++||+++||+++....+ ....+. ++..+.+...............+.+..|++|.|+|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~------~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d 74 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG------ENVTFE-GGFALQEGYSWLEGISKADIIEKSNNFELYFEEED 74 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC------ceEEEe-ccceeccchhhhccCCcccccccCCceEEEEEehh
Confidence 57899999999999999999999999865332 111121 22222221110000000111122334799999999
Q ss_pred HHHHHHHHHHCCC-eEecc----CCCceEEEEECCCCCeEEEEee
Q 032174 105 VSKLKMILDKAGI-SYTLS----KSGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 105 ~~~~~~~l~~~G~-~~~~~----~~g~~~~~~~DpdG~~ie~~~~ 144 (146)
+++++++|+++|. ++..+ ++|.+.++++|||||+|||.+.
T Consensus 75 vd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 75 FDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred hHHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 9999999999985 56433 2567899999999999999874
No 27
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.85 E-value=1.3e-19 Score=113.02 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=79.6
Q ss_pred eeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEe
Q 032174 23 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 102 (146)
Q Consensus 23 ~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v 102 (146)
+.+++|+.|.|+|++++++||++ |||+...+.. ..+|+..++....++...... ..+..|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD------DELYYRGYGTDPFVYVARKGE--------KARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC------CeEEEecCCCccEEEEcccCC--------cCcccEEEEEE
Confidence 46899999999999999999999 9999866432 245666543322232221111 13468999999
Q ss_pred CCHHHHHHHHHHCCCeEecc---CCCceEEEEECCCCCeEEEEe
Q 032174 103 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 103 ~d~~~~~~~l~~~G~~~~~~---~~g~~~~~~~DpdG~~ie~~~ 143 (146)
+|.+++.+.+++.|+..... +.+.+.+++.|||||.||++.
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVY 109 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEe
Confidence 99999999999999987543 346789999999999999975
No 28
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.85 E-value=1.6e-19 Score=112.67 Aligned_cols=113 Identities=21% Similarity=0.303 Sum_probs=81.1
Q ss_pred eEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeC---CeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCC
Q 032174 28 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 104 (146)
Q Consensus 28 hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d 104 (146)
||+|.|.|++++++||.++|||++..+..... ....+.+... +..+++........ ..+...++..|++|.|+|
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~v~d 77 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGSPETSLVLAPPANPAA--MSGLQPGGTPGLVLATDD 77 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCCCeeEEEEeCCCCccc--cccccCCCceEEEEEehH
Confidence 79999999999999999999999987654211 2222323322 23444443332211 112233556899999999
Q ss_pred HHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCeEEEEe
Q 032174 105 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 105 ~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ie~~~ 143 (146)
+++++++|+++|+.+..++ .+++.++++||+||+|||+|
T Consensus 78 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 78 IDATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 9999999999999987544 35689999999999999975
No 29
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.84 E-value=2.2e-19 Score=114.04 Aligned_cols=114 Identities=25% Similarity=0.346 Sum_probs=86.1
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhc---CCeeccccCCCCCCceEEEEEe-CCeEEEEEeeCCCCCCCCCCCCCCCccEEEE
Q 032174 25 SVHHVGILCENLERSLEFYQNIL---GLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 100 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~l---g~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 100 (146)
+|+||.|.|+|++++++||+++| ||++...... ...|... ++..+.++........ .......+..|++|
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-----~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~~g~~hia~ 74 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-----GRSWRAGDGGTYLVLQQADGESAG-RHDRRNPGLHHLAF 74 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-----CceEEecCCceEEEEEecccCCCc-ccccCCcCeeEEEE
Confidence 57999999999999999999999 9998775421 1244443 6678888765544321 11123345689999
Q ss_pred EeC---CHHHHHHHHHHCCCeEeccC-------CCceEEEEECCCCCeEEEEee
Q 032174 101 AIR---DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 101 ~v~---d~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DpdG~~ie~~~~ 144 (146)
.|+ |+++++++|+++|+.+...+ .+.+.+|++|||||+|||+.+
T Consensus 75 ~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 75 RAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 997 58999999999999986532 256889999999999999864
No 30
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.84 E-value=2.4e-19 Score=111.68 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=81.9
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCC-eEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCC
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 104 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d 104 (146)
+.|++|.|+|++++++||+++||+++..... .. ...+++..++ ..+.++...... .......|++|.++|
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~f~v~d 71 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GG--GDYAVFSTGGGAVGGLMKAPEPA------AGSPPGWLVYFAVDD 71 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CC--CceEEEEeCCccEEEEecCCCCC------CCCCCeEEEEEEeCC
Confidence 4799999999999999999999999876543 11 1334555554 344555443322 112335799999999
Q ss_pred HHHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEe
Q 032174 105 VSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 105 ~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~ 143 (146)
+++++++|+++|+++..++ .+++.++++|||||.|+|+|
T Consensus 72 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 72 VDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 9999999999999986543 36788999999999999986
No 31
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.84 E-value=2e-19 Score=113.34 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=80.3
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeC
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 103 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~ 103 (146)
+++.||.|.|+|++++++||+++|||++..+... ..+|+..++..+.+...+... .+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPED-----GALYLRMDDRAWRIAVHPGEA---------DDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCCC-----CeEEEEccCCceEEEEEeCCC---------CceeEEEEEEC
Confidence 3689999999999999999999999998654221 246666654433333322111 23579999997
Q ss_pred ---CHHHHHHHHHHCCCeEeccC-------CCceEEEEECCCCCeEEEEeec
Q 032174 104 ---DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 104 ---d~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
|+++++++|+++|+++...+ .+.+.+|++|||||.|||+..+
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 58999999999999987532 2347899999999999998643
No 32
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.84 E-value=9.9e-20 Score=114.76 Aligned_cols=108 Identities=21% Similarity=0.315 Sum_probs=81.8
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCC----eEEEEEeeCCCCCCCCCCCCCCCcc
Q 032174 21 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDR 96 (146)
Q Consensus 21 ~~~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~ 96 (146)
|.+.+++|+.|.|+|++++++||+++||+++..+.+ ..+|+...+ ..+.+.. .. ..+..
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~--~~---------~~~~~ 64 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTE--SP---------EAGLG 64 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEee--CC---------CCceE
Confidence 567899999999999999999999999999887533 235565432 1222221 11 13468
Q ss_pred EEEEEeC---CHHHHHHHHHHCCCeEecc---CCCceEEEEECCCCCeEEEEeec
Q 032174 97 HTCIAIR---DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 97 hl~~~v~---d~~~~~~~l~~~G~~~~~~---~~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
|++|.++ ++++++++++++|+++... +..+..+|++|||||.||+....
T Consensus 65 h~af~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 65 HIAWRASSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEec
Confidence 9999997 6889999999999987432 24567899999999999998753
No 33
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.84 E-value=1.3e-19 Score=114.78 Aligned_cols=118 Identities=22% Similarity=0.354 Sum_probs=88.3
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCCC-CCCceEEEEEeCCeEEEEEeeCCCCCCCC--CCCCCCCccEEEEEe
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPHD-KLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 102 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~hl~~~v 102 (146)
++||.|.|+|++++++||+++||++........ ......+++..++..++++.......... ....+.+..|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 579999999999999999999999998755432 22334677777888888887554322211 112345678999999
Q ss_pred CCHHHHHHHHHHCCCeEeccC----CCceEEEEECCC---CCeEEEEe
Q 032174 103 RDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPD---ANALEFTQ 143 (146)
Q Consensus 103 ~d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~Dpd---G~~ie~~~ 143 (146)
+|+++++++++++|+++..++ .+++.+++.||+ ||+|||+|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999986543 345555555555 99999975
No 34
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.83 E-value=1.5e-19 Score=114.11 Aligned_cols=116 Identities=21% Similarity=0.400 Sum_probs=83.9
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCC-CceEEEEEe----CCeEEEEEeeCCCCCCCCCCCCCCCccEEE
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKL-PYRGAWLWV----GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 99 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~-~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~ 99 (146)
+++||+|.|.|++++++||+++||++...+...... .....++.. ++..++|+..+..... ......+..|++
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~~~~hi~ 78 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPK--GRRGPGQIHHIA 78 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCC--CCCCCCcEEEEE
Confidence 478999999999999999999999998876542221 112233332 3457777765443221 112224468999
Q ss_pred EEeC---CHHHHHHHHHHCCCeEeccC--CCceEEEEECCCCCeEEEE
Q 032174 100 IAIR---DVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFT 142 (146)
Q Consensus 100 ~~v~---d~~~~~~~l~~~G~~~~~~~--~g~~~~~~~DpdG~~ie~~ 142 (146)
|.++ ++++++++++++|+++..+. .+++.+|++||+||+||++
T Consensus 79 f~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 79 FSVPSEASLDAWRERLRAAGVPVSGVVDHFGERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEcCCHHHHHHHHHHHHHcCCcccceEeecceEEEEEECCCCCEEEeC
Confidence 9998 57999999999999876432 4678999999999999984
No 35
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.83 E-value=1.8e-19 Score=113.65 Aligned_cols=107 Identities=26% Similarity=0.413 Sum_probs=81.9
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeC-
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 103 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~- 103 (146)
+++|+.|.|+|++++++||+++||++.....+ ..+++..++..+.+....... ...+..|++|.++
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~-------~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD------KGAYLEAGDLWLCLSVDANVG-------PAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC------CceEEecCCEEEEEecCCCCC-------CCCCeeeEEEEeCH
Confidence 57899999999999999999999999876543 235566666665554322211 1134589999984
Q ss_pred -CHHHHHHHHHHCCCeEeccC-CCceEEEEECCCCCeEEEEee
Q 032174 104 -DVSKLKMILDKAGISYTLSK-SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 104 -d~~~~~~~l~~~G~~~~~~~-~g~~~~~~~DpdG~~ie~~~~ 144 (146)
|+++++++|+++|+++...+ ...+.+|+.|||||+|||+..
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTSEGDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCCCccEEEEECCCCCEEEEEeC
Confidence 89999999999999876543 346799999999999999864
No 36
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.83 E-value=2.4e-19 Score=112.63 Aligned_cols=108 Identities=21% Similarity=0.312 Sum_probs=80.8
Q ss_pred eeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEe
Q 032174 23 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 102 (146)
Q Consensus 23 ~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v 102 (146)
+.+|+|+.|.|+|++++++||+++||++...... ..+++..++...+++....... .+..|++|.+
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRATGSEHHILRLRRSDR--------NRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECCCCccEEEEeccCCC--------CCCceEEEEe
Confidence 4689999999999999999999999999875432 2456654443333333221111 2357999999
Q ss_pred C---CHHHHHHHHHHCCCeEeccC------CCceEEEEECCCCCeEEEEee
Q 032174 103 R---DVSKLKMILDKAGISYTLSK------SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 103 ~---d~~~~~~~l~~~G~~~~~~~------~g~~~~~~~DpdG~~ie~~~~ 144 (146)
+ ++++++++|+++|+++..++ ++.+.+++.||+||.|||+..
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 4 78999999999999986532 357889999999999999874
No 37
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.83 E-value=1.9e-19 Score=111.96 Aligned_cols=105 Identities=23% Similarity=0.397 Sum_probs=80.7
Q ss_pred eEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeC--CH
Q 032174 28 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--DV 105 (146)
Q Consensus 28 hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~--d~ 105 (146)
|+.|.|+|++++++||+++||++.....+ ..+++..++..+.+...+.... ...+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~------~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS------KEAYFELAGLWICLMEEDSLQG------PERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC------ceeEEEecCeEEEeccCCCcCC------CCCCccEEEEEcCHHHH
Confidence 78999999999999999999999876542 2456666766666554332111 1234589999995 79
Q ss_pred HHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEee
Q 032174 106 SKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 106 ~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~~ 144 (146)
++++++++++|+++.... .+++.+|++|||||+||+..-
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 999999999999986431 357899999999999999864
No 38
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.83 E-value=8.2e-19 Score=110.26 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=84.1
Q ss_pred EEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCCHHHH
Q 032174 29 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 108 (146)
Q Consensus 29 v~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d~~~~ 108 (146)
+.|.|+|++++++||+++||++..............+.+..++..+.+........ .......+..|++|.|+|++++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~v~d~~~~ 82 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHG--SPASWGGTPVSLHLYVEDVDAT 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccC--CCCCCCCceEEEEEEeCCHHHH
Confidence 56889999999999999999998875543333334455667777777764332211 1112234457999999999999
Q ss_pred HHHHHHCCCeEecc----CCCceEEEEECCCCCeEEEEe
Q 032174 109 KMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 109 ~~~l~~~G~~~~~~----~~g~~~~~~~DpdG~~ie~~~ 143 (146)
++++.+.|+++..+ ..+.+.++++|||||+|+|.+
T Consensus 83 ~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 83 FARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 99999999987643 356789999999999999986
No 39
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.83 E-value=7.5e-19 Score=112.49 Aligned_cols=113 Identities=25% Similarity=0.363 Sum_probs=83.1
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeC---CeEEEEEeeCCCCCCCCCCCCCCCccEEEEE
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 101 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 101 (146)
+|+|++|.|+|++++++||+++||+++....+. ...+++..+ +..+.++....... +....+..|++|.
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~h~~f~ 72 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPDEHHQIALITGRPAAP----PPGPAGLNHIAFE 72 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCCCceEEEEEecCCCCC----CCCCCCceEEEEE
Confidence 479999999999999999999999998765432 134556554 23566654433211 1223456899999
Q ss_pred eCCHH---HHHHHHHHCCCeEeccC--CCceEEEEECCCCCeEEEEeec
Q 032174 102 IRDVS---KLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 102 v~d~~---~~~~~l~~~G~~~~~~~--~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
|+|++ +++++|.+.|+++.... .+.+.++++||+||+|||++..
T Consensus 73 v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 121 (134)
T cd08348 73 VDSLDDLRDLYERLRAAGITPVWPVDHGNAWSIYFRDPDGNRLELFVDT 121 (134)
T ss_pred eCCHHHHHHHHHHHHHCCCCccccCCCCceeEEEEECCCCCEEEEEEcC
Confidence 98655 57899999999876532 3468899999999999999754
No 40
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.83 E-value=3.5e-19 Score=112.38 Aligned_cols=108 Identities=16% Similarity=0.185 Sum_probs=78.8
Q ss_pred eeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeC-C-eEEEEEeeCCCCCCCCCCCCCCCccEEEE
Q 032174 23 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-A-EMIHLMELPNPDPLSGRPEHGGRDRHTCI 100 (146)
Q Consensus 23 ~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 100 (146)
+.+++|+.|.|+|++++++||+++|||++....+. ..+++... + ....+...... ..+..|++|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~---------~~~~~hiaf 67 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQ-----GRVYLKAWDEFDHHSIVLREAD---------TAGLDFMGF 67 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCC-----ceEEEEccCCCcccEEEeccCC---------CCCeeEEEE
Confidence 57899999999999999999999999998765321 12445432 1 11112111111 123689999
Q ss_pred EeC---CHHHHHHHHHHCCCeEeccC-----CCceEEEEECCCCCeEEEEee
Q 032174 101 AIR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 101 ~v~---d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie~~~~ 144 (146)
.++ |+++++++|+++|+++...+ ..++.+|++|||||+||+.+.
T Consensus 68 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 119 (122)
T cd07265 68 KVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYAD 119 (122)
T ss_pred EeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEe
Confidence 997 89999999999999986432 235789999999999999875
No 41
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.83 E-value=6e-19 Score=111.80 Aligned_cols=110 Identities=14% Similarity=0.160 Sum_probs=77.4
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCC-----------CCceEEEEEe----CCeEEEEEeeCCCCCCCCCC
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWV----GAEMIHLMELPNPDPLSGRP 89 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~-----------~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~ 89 (146)
++.|++|.|+|+++|++||+++|||++..+...+. .....+++.. .+..++|........ .
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~----~ 77 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGD----Y 77 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCC----C
Confidence 57899999999999999999999999876553332 1112233433 234666765333221 1
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEEEe
Q 032174 90 EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 90 ~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~~~ 143 (146)
..+. .|++|.|++. ++.++|+++|+++...+.+ .++++||||++|||+-
T Consensus 78 ~~g~--~~~hlav~~~-d~~~~l~~~Gv~~~~~~~~--~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 78 ELGN--DFLGITIHSK-QAVSNAKKHNWPVTEVEDG--VYEVKAPGGYKFYLID 126 (127)
T ss_pred CCCC--CEEEEEEECH-HHHHHHHHCCCceecCCCC--EEEEECCCCCEEEEec
Confidence 2222 3788888777 5559999999998876543 8999999999999974
No 42
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.83 E-value=1.1e-19 Score=119.27 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=79.1
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCC-CCCceEEEEEeCCe--EEEEEeeCCCCCCCCCCCCCCCccEEEEE
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHD-KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIA 101 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~-~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 101 (146)
+|+||+|.|+|++++++||+++||+++......+ ......+|+..++. .+...... . ......+..|+||.
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---l---~~~~~~g~~Hiaf~ 74 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLA---L---AQGPESGVHHAAFE 74 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHH---H---hcCCCCceeEEEEE
Confidence 4789999999999999999999999987543222 12234566665432 11100000 0 00113567999999
Q ss_pred eCCHHHHH---HHHHHCCCeEeccC-----CCceEEEEECCCCCeEEEEee
Q 032174 102 IRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 102 v~d~~~~~---~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie~~~~ 144 (146)
|+|++++. ++|+++|+++...+ .....+|+.|||||+||+...
T Consensus 75 v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 75 VHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTD 125 (153)
T ss_pred cCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcC
Confidence 99999986 99999999987543 123467999999999999853
No 43
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.83 E-value=5.6e-19 Score=113.34 Aligned_cols=107 Identities=20% Similarity=0.338 Sum_probs=79.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCC----eEEEEEeeCCCCCCCCCCCCCCCccEEE
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTC 99 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hl~ 99 (146)
.+++|++|.|+|++++++||+++||+++..... . ..+|+..++ ..+.+...+. ...+..|++
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~---------~~~g~~hia 67 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA---------PMAGFHHAA 67 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC---------CCCcceEEE
Confidence 478999999999999999999999999876532 1 346666542 2444433221 124579999
Q ss_pred EEeCCHHHHH---HHHHHCCCeEeccC-----CCceEEEEECCCCCeEEEEee
Q 032174 100 IAIRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 100 ~~v~d~~~~~---~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie~~~~ 144 (146)
|.|+|++++. ++|+++|+++...+ .+.+.+|++||+||+|||...
T Consensus 68 f~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~ 120 (134)
T cd08360 68 FEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGAD 120 (134)
T ss_pred EEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcc
Confidence 9999887775 59999999976432 234668999999999999853
No 44
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.83 E-value=5.7e-19 Score=110.27 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=82.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeC-CeEEEEEeeCCCCCCCCCCCCCCCccEEEEEe
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 102 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v 102 (146)
.+++|+.|.|+|++++++||+++||+++..... ..+|+..+ +..+.+....... .+..|++|.|
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~h~~~~v 65 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSEDDHHSLVLTEGDE---------PGVDALGFEV 65 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCCCCcEEEEEEeCCC---------CCceeEEEEc
Confidence 368999999999999999999999999987542 34677765 3433333222111 2358999999
Q ss_pred C---CHHHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEeec
Q 032174 103 R---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 103 ~---d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
+ ++++++++|+++|+++...+ .+.+.+++.||+||++|+....
T Consensus 66 ~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 66 ASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred CCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEcc
Confidence 8 68999999999999986543 4568999999999999998653
No 45
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.83 E-value=3.9e-19 Score=116.73 Aligned_cols=111 Identities=17% Similarity=0.288 Sum_probs=80.4
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCC---CCCceEEEEEeCCe--EEEEEeeCCCCCCCCCCCCCCCccEE
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHD---KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHT 98 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~---~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hl 98 (146)
.+|+||+|.|+|++++++||+++||+++....... ......+|+..++. .+.+.... ...+..|+
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~----------~~~g~~Hi 77 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGP----------GPKRIHHL 77 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCC----------CCceeEEE
Confidence 57999999999999999999999999986542211 11224556655432 23332211 12447899
Q ss_pred EEEeCCHH---HHHHHHHHCCCeEeccC-----CCceEEEEECCCCCeEEEEee
Q 032174 99 CIAIRDVS---KLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 99 ~~~v~d~~---~~~~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie~~~~ 144 (146)
+|.|+|++ +++++|+++|+++...+ .+.+.+|++||+||.|||...
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 99998654 68999999999986543 356889999999999999764
No 46
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.83 E-value=7.6e-19 Score=110.21 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=78.4
Q ss_pred eEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCC--eEEEEEeeCCCCCC-CCCCCCCCCccEEEEEeCC
Q 032174 28 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPL-SGRPEHGGRDRHTCIAIRD 104 (146)
Q Consensus 28 hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~-~~~~~~~~~~~hl~~~v~d 104 (146)
+++|.|+|++++++||+++|||+.....+ ..+.+..++ ..+.+........+ ...+..+.+ .|++|.|+|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~v~d 76 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDGGVELAFMLPGHETVPAAQYQFQGQG-LILNFEVDD 76 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCCceEEEEccCCCCCCcchhcccCCce-EEEEEEECC
Confidence 47899999999999999999999886522 123344443 35555443322211 011222333 599999999
Q ss_pred HHHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEe
Q 032174 105 VSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 105 ~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~ 143 (146)
++++++++.++|+++..++ .|.+.++++|||||+|||+|
T Consensus 77 id~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 77 VDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 9999999999999875432 46689999999999999986
No 47
>PRK06724 hypothetical protein; Provisional
Probab=99.82 E-value=5.2e-19 Score=112.69 Aligned_cols=108 Identities=21% Similarity=0.267 Sum_probs=75.2
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHhhhc---CCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEE
Q 032174 22 GVVSVHHVGILCENLERSLEFYQNIL---GLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 98 (146)
Q Consensus 22 ~~~~l~hv~l~v~d~~~~~~FY~~~l---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl 98 (146)
+..+++||.|.|+|++++++||+++| |++.... +.+..+...+.|....... + ...+..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~----------~~~~~g~~~l~l~~~~~~~-----~-~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNE----------VAYSTGESEIYFKEVDEEI-----V-RTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeee----------EeeeCCCeeEEEecCCccc-----c-CCCCceeE
Confidence 35679999999999999999999977 5553311 0111233344443322110 1 12346899
Q ss_pred EEEe---CCHHHHHHHHHHCCCeEeccC-------CCceEEEEECCCCCeEEEEeec
Q 032174 99 CIAI---RDVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 99 ~~~v---~d~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
||.| +++|+++++|+++|+++...+ +|.+.++++|||||.||+...+
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 9998 589999999999999985432 2347889999999999998654
No 48
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=1.2e-18 Score=110.12 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=79.5
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCC--CC----CCCCCCCCCccEEE
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPD--PL----SGRPEHGGRDRHTC 99 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~----~~~~~~~~~~~hl~ 99 (146)
+.|+.|.|+|++++++||+++||++........ ....+..++..+.+....... .. ...+....+..|++
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESG----DYGELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIA 76 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCC----cEEEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEE
Confidence 468999999999999999999999986532211 112233345555444332110 00 01111222336899
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEee
Q 032174 100 IAIRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 100 ~~v~d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~~ 144 (146)
|.|+|+++++++++++|+.+..++ .|.+.++++|||||.||+.++
T Consensus 77 ~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 77 FVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEcCCHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 999999999999999999885432 466889999999999999874
No 49
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.82 E-value=2.4e-20 Score=117.77 Aligned_cols=117 Identities=25% Similarity=0.441 Sum_probs=84.7
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccC--CCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCC-CCCccEEEEE
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARP--HDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEH-GGRDRHTCIA 101 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~hl~~~ 101 (146)
+|+||+|.|+|++++++||+++||+++..... .........++..+...+.+............... .....|+++.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFL 80 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEE
Confidence 68999999999999999999999999987655 12223345666667777777776655443211100 0134677777
Q ss_pred eC---CHHHHHHHHHHCCCeEeccC-----CCceEEEEECCCCCeEEE
Q 032174 102 IR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEF 141 (146)
Q Consensus 102 v~---d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie~ 141 (146)
+. |+++++++|++.|+++...+ .....+|++||+||.|||
T Consensus 81 ~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 81 AFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp ESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred eccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 76 77888999999999987653 234556899999999997
No 50
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.82 E-value=1.2e-18 Score=115.17 Aligned_cols=112 Identities=21% Similarity=0.324 Sum_probs=75.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeC
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 103 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~ 103 (146)
.+|+||+|.|+|++++++||+++|||++..............|+..++....+..... .+.+..|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~~---------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTGG---------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEecC---------CCCceeEEEEEcC
Confidence 4689999999999999999999999998653322222222344544322111111111 1134689999998
Q ss_pred C---HHHHHHHHHHCCCeE--eccC-----CCceEEEEECCCCCeEEEEee
Q 032174 104 D---VSKLKMILDKAGISY--TLSK-----SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 104 d---~~~~~~~l~~~G~~~--~~~~-----~g~~~~~~~DpdG~~ie~~~~ 144 (146)
| +++++++|+++|+.. ...+ .+.+.+|++|||||+||+++.
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeec
Confidence 5 778889999999863 2221 234679999999999999864
No 51
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.81 E-value=1.5e-18 Score=109.27 Aligned_cols=103 Identities=25% Similarity=0.383 Sum_probs=78.8
Q ss_pred EEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCCHHHH
Q 032174 29 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 108 (146)
Q Consensus 29 v~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d~~~~ 108 (146)
..|.|+|++++++||++ |||+...+.+. ..+++..++..++|.......+ . ....|++|.|+|++++
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~~~~l~l~~~~~~~~-----~--~~~~~~~~~v~dvd~~ 72 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRGDLELHFFAHPDLDP-----A--TSPFGCCLRLPDVAAL 72 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcCCEEEEEEecCcCCC-----C--CCcceEEEEeCCHHHH
Confidence 67999999999999999 99998765432 2345666777888876432111 1 1236799999999999
Q ss_pred HHHHHHCCCeEe-------cc----CCCceEEEEECCCCCeEEEEee
Q 032174 109 KMILDKAGISYT-------LS----KSGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 109 ~~~l~~~G~~~~-------~~----~~g~~~~~~~DpdG~~ie~~~~ 144 (146)
+++|+++|+.+. .. ++|.+.++++|||||+|||.|.
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 73 HAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 999999999742 11 2578899999999999999884
No 52
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.81 E-value=1.3e-18 Score=110.11 Aligned_cols=113 Identities=18% Similarity=0.141 Sum_probs=78.4
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeC-CeEEEEEeeCCCC---CCCCCCCCCCCccEEEEE
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPD---PLSGRPEHGGRDRHTCIA 101 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~---~~~~~~~~~~~~~hl~~~ 101 (146)
+.+++|.|+|++++++||++ |||+......... .+++..+ +..+.|....... ..........+..|++|.
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~ 75 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLS 75 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEe
Confidence 35799999999999999976 8999875333221 2344444 4567666543211 000000122334799999
Q ss_pred eC---CHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCeEEEEe
Q 032174 102 IR---DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 102 v~---d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ie~~~ 143 (146)
|+ ++++++++++++|+++..++ ++.+.+|++|||||+||++.
T Consensus 76 v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 76 ADSREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred CCCHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 98 58899999999999987543 34568899999999999985
No 53
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.81 E-value=3.3e-18 Score=109.30 Aligned_cols=108 Identities=19% Similarity=0.324 Sum_probs=79.6
Q ss_pred eeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCe--EEEEEeeCCCCCCCCCCCCCCCccEEEEEeCC
Q 032174 27 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 104 (146)
Q Consensus 27 ~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d 104 (146)
+||+|.|+|++++++||+++||+++......+ .....+|+..++. .+.+.... . ..+..|++|.|+|
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~--~--------~~~~~hl~~~v~d 69 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDEDHHDLALFPGP--E--------RPGLHHVAFEVES 69 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCCcceEEEEcCC--C--------CCCeeEEEEEcCC
Confidence 58999999999999999999999987654322 2234566666543 33333311 1 2346899999997
Q ss_pred HH---HHHHHHHHCCCeEeccC-----CCceEEEEECCCCCeEEEEeec
Q 032174 105 VS---KLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 105 ~~---~~~~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
++ +++++|+++|+++...+ .+.+.++++|||||+|||.+..
T Consensus 70 ~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 70 LDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred HHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence 64 78899999999986532 2357889999999999998753
No 54
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.80 E-value=3e-18 Score=108.19 Aligned_cols=111 Identities=22% Similarity=0.297 Sum_probs=74.5
Q ss_pred eEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCC--CCC-CCCCCCccEEEE--Ee
Q 032174 28 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPL--SGR-PEHGGRDRHTCI--AI 102 (146)
Q Consensus 28 hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~-~~~~~~~~hl~~--~v 102 (146)
||+|.|+|++++++||+++||+++..... ..+.+..++..+.+......... ... .....+..|+++ .+
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 75 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSE 75 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeH
Confidence 89999999999999999999999865422 11223334444444332221110 001 111223467765 45
Q ss_pred CCHHHHHHHHHHCCCeEeccC--------CCceEEEEECCCCCeEEEEee
Q 032174 103 RDVSKLKMILDKAGISYTLSK--------SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 103 ~d~~~~~~~l~~~G~~~~~~~--------~g~~~~~~~DpdG~~ie~~~~ 144 (146)
+|+++++++|+++|+++..++ .+.+.+|++|||||+|||..+
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 699999999999999987432 235889999999999999864
No 55
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=5.3e-18 Score=106.60 Aligned_cols=114 Identities=26% Similarity=0.497 Sum_probs=82.7
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCC-eEEEEEeeCCCCCC-C-CCCCCCCCccEEEEEe
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPL-S-GRPEHGGRDRHTCIAI 102 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~-~-~~~~~~~~~~hl~~~v 102 (146)
+.++.|.|.|++++++||+++|||++..... . ..+++..++ ..+.++........ . ..+....+..|++|.+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~-~----~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 75 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKED-R----RLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAI 75 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecCC-C----ceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEc
Confidence 3579999999999999999999999886411 1 235666665 45555554322110 0 0111234568999999
Q ss_pred C--CHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCeEEEEee
Q 032174 103 R--DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 103 ~--d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ie~~~~ 144 (146)
+ |++++++++.++|+.+.... .+++.++++|||||+||+++.
T Consensus 76 ~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 76 PAEELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred CHHHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEecC
Confidence 5 89999999999999876543 467899999999999999863
No 56
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.80 E-value=4.4e-18 Score=110.52 Aligned_cols=106 Identities=17% Similarity=0.316 Sum_probs=78.4
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCe--EEEEEeeCCCCCCCCCCCCCCCccEEEEE
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIA 101 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 101 (146)
.+++|+.|.|+|++++++||+++|||++..... ...+|+..++. .+.+... . ..+..|++|.
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~l~~~~~~~~~~l~~~--~---------~~~~~hiaf~ 66 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG-----DQMAFLRCNSDHHSIAIARG--P---------HPSLNHVAFE 66 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC-----CeEEEEECCCCcceEEEccC--C---------CCceEEEEEE
Confidence 378999999999999999999999999865322 12356665543 3333211 0 1346899999
Q ss_pred eCCHHHHH---HHHHHCCCeEeccC-----CCceEEEEECCCCCeEEEEeec
Q 032174 102 IRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 102 v~d~~~~~---~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
|+|++++. ++|+++|+++...+ .+.+.+|++||+||.|||++..
T Consensus 67 v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 67 MPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 99877774 89999999986432 2346689999999999998753
No 57
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.80 E-value=5.1e-18 Score=106.93 Aligned_cols=113 Identities=20% Similarity=0.306 Sum_probs=77.4
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeC-CeEEEEEeeCCCCC-CCCCCCCCCCccEEEEEeC
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDP-LSGRPEHGGRDRHTCIAIR 103 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~~~~~~~~~hl~~~v~ 103 (146)
|+||+|.|+|++++++||++ |||++....... ..+.+..+ +..+.+........ ....+....+..|++|.++
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~----~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDE----PHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCE 75 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCC----CcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcC
Confidence 57999999999999999975 999986543211 22445554 45555543321110 0011112233478999875
Q ss_pred ---CHHHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEe
Q 032174 104 ---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 104 ---d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~ 143 (146)
|+++++++|+++|+++..++ .|.+.++++|||||+|||+.
T Consensus 76 ~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~ 122 (122)
T cd07235 76 TPAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLFA 122 (122)
T ss_pred CHHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEeC
Confidence 89999999999999876433 46688999999999999973
No 58
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.80 E-value=6.9e-18 Score=104.49 Aligned_cols=106 Identities=30% Similarity=0.459 Sum_probs=80.0
Q ss_pred EEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCCHHHH
Q 032174 29 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 108 (146)
Q Consensus 29 v~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d~~~~ 108 (146)
..|.|+|++++++||+++||+++...... ...+++..++..++|......... ...+..|++|.++|++++
T Consensus 2 ~~i~v~d~~~s~~FY~~~lg~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 72 (112)
T cd08349 2 PVLPVSDIERSLAFYRDVLGFEVDWEHPE----PGYAFLSRGGAQLMLSEHDGDEPV-----PLGRGGSVYIEVEDVDAL 72 (112)
T ss_pred CEEEECCHHHHHHHHHhccCeEEEEEcCC----CcEEEEEeCCEEEEEeccCCCCCC-----CCCCcEEEEEEeCCHHHH
Confidence 36899999999999999999998775431 133556667777777654432211 223346899999999999
Q ss_pred HHHHHHCCCe-Eecc----CCCceEEEEECCCCCeEEEEe
Q 032174 109 KMILDKAGIS-YTLS----KSGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 109 ~~~l~~~G~~-~~~~----~~g~~~~~~~DpdG~~ie~~~ 143 (146)
++++.++|+. +..+ ..+.+.++++||+||.|||+|
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 73 YAELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 9999999998 4332 245688999999999999986
No 59
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.80 E-value=1.1e-17 Score=105.11 Aligned_cols=107 Identities=22% Similarity=0.388 Sum_probs=76.4
Q ss_pred eeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCC--
Q 032174 27 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD-- 104 (146)
Q Consensus 27 ~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d-- 104 (146)
.|+.|.|+|++++++||+++||++...+.+ . ... +..++..+.+........ +. .+..|++|.+++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~---~~~-~~~~~~~~~~~~~~~~~~----~~--~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D---YAK-FLLEDPRLNFVLNERPGA----PG--GGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C---eeE-EEecCCceEEEEecCCCC----CC--CCeeEEEEEeCCHH
Confidence 489999999999999999999998866432 1 122 233333333333222111 01 346899999986
Q ss_pred -HHHHHHHHHHCCCeEeccCC------CceEEEEECCCCCeEEEEeec
Q 032174 105 -VSKLKMILDKAGISYTLSKS------GRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 105 -~~~~~~~l~~~G~~~~~~~~------g~~~~~~~DpdG~~ie~~~~~ 145 (146)
+++++++|.++|+++...+. +.+.+|++||+||+|||+.+.
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 88899999999999865431 246799999999999999864
No 60
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.80 E-value=4.3e-18 Score=107.12 Aligned_cols=107 Identities=23% Similarity=0.311 Sum_probs=78.3
Q ss_pred eeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeC--CeEEEEEeeCCCCCCCCCCCCCCCccEEEE
Q 032174 23 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCI 100 (146)
Q Consensus 23 ~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 100 (146)
+.++.|+.|.|+|++++++||+++||+++....+ ..+|+... .....+...... ..+..|++|
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~hi~~ 66 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKAP---------VAGLGHIAF 66 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeCC---------CCceeEEEE
Confidence 5789999999999999999999999999876432 23455431 122222221111 123689999
Q ss_pred EeC---CHHHHHHHHHHCCCeEecc----C-CCceEEEEECCCCCeEEEEee
Q 032174 101 AIR---DVSKLKMILDKAGISYTLS----K-SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 101 ~v~---d~~~~~~~l~~~G~~~~~~----~-~g~~~~~~~DpdG~~ie~~~~ 144 (146)
.++ |+++++++++++|+++... . ...+.+|+.|||||+||++..
T Consensus 67 ~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 67 RVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred ECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 994 8999999999999998543 1 235789999999999999864
No 61
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.79 E-value=5.9e-18 Score=104.31 Aligned_cols=100 Identities=27% Similarity=0.509 Sum_probs=72.3
Q ss_pred EEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCe----EEEEEeeCCCCCCCCCCCCCCCccEEEEEeCCHH
Q 032174 31 ILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 106 (146)
Q Consensus 31 l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d~~ 106 (146)
|.|+|++++++||+++|||++....+ ..+.+..+.. ...+...+... ....+..|++|.|+|++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~dv~ 68 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP------DYVDFSLGFRFHDGVIEFLQFPDPP------GPPGGGFHLCFEVEDVD 68 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET------SEEEEEETEEEEEEEEEEEEEESSS------SSSSSEEEEEEEESHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC------CeEEEEeccchhhhhHHHccCCccc------cCCCceeEEEEEEcCHH
Confidence 68999999999999999999998433 2233444321 23333332211 11244689999999999
Q ss_pred HHHHHHHHCCCeEecc----CCCceEEEEECCCCCeEEEE
Q 032174 107 KLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 142 (146)
Q Consensus 107 ~~~~~l~~~G~~~~~~----~~g~~~~~~~DpdG~~ie~~ 142 (146)
+++++++++|+++..+ +.|.+.+++.|||||+|||+
T Consensus 69 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 69 ALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 9999999999997543 35679999999999999986
No 62
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.79 E-value=5.1e-18 Score=105.90 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=76.0
Q ss_pred EEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCCHHHH
Q 032174 29 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 108 (146)
Q Consensus 29 v~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d~~~~ 108 (146)
..|.|+|++++++||++ |||++....+ ..+++..++..+.|........ ....+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~~~l~l~~~~~~~~--------~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGNCAFYLQDYYVKDW--------AENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCCEEEEeecCCCccc--------ccCCEEEEEECCHHHH
Confidence 46889999999999988 9999987532 3466777777766644221111 1136799999999999
Q ss_pred HHHHHHCCCeEe---------ccCCCceEEEEECCCCCeEEEEe
Q 032174 109 KMILDKAGISYT---------LSKSGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 109 ~~~l~~~G~~~~---------~~~~g~~~~~~~DpdG~~ie~~~ 143 (146)
+++|+++|+++. ..++|.+.++++|||||+|+|.|
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 999999998642 12357899999999999999875
No 63
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.79 E-value=1.6e-17 Score=103.49 Aligned_cols=106 Identities=22% Similarity=0.264 Sum_probs=77.8
Q ss_pred EEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-CCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCC---
Q 032174 29 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD--- 104 (146)
Q Consensus 29 v~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d--- 104 (146)
+.|.|+|++++++||+++||+++....+ ..+.+.. ++..+.++....... .+....+..|++|.+++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP------TFALFVLGSGVKLGLWSRHTVEP---ASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC------ceEEEEeCCCcEEEEeeccccCC---CCCCCCCceEEEEEcCCHHH
Confidence 5789999999999999999999876432 1233444 456777766443221 11122345899999985
Q ss_pred HHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCeEEEEe
Q 032174 105 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 105 ~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ie~~~ 143 (146)
++++++++.++|+++..++ +.++.++++|||||+|||+.
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEEEeeC
Confidence 8889999999999987643 33478999999999999963
No 64
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.78 E-value=1.7e-17 Score=103.05 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=74.4
Q ss_pred EEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeC---CeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCCH
Q 032174 29 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 105 (146)
Q Consensus 29 v~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d~ 105 (146)
..|.|+|++++++||+++|||+...... ..+++..+ +..+.+....... ....|++|.|+|+
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~v~d~ 68 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDHG------WIATFASPQNMTVQVSLATEGGTA---------TVVPDLSIEVDDV 68 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcCC------ceEEEeecCCCCcEEEEecCCCCC---------CCCCEEEEEeCCH
Confidence 5689999999999999999999864311 22333332 2344444322111 1246999999999
Q ss_pred HHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEee
Q 032174 106 SKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 106 ~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~~ 144 (146)
++++++|+++|+.+..++ +|.+.+++.||+||+|+|.++
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 69 DAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 999999999999986543 456889999999999999975
No 65
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.78 E-value=1.2e-17 Score=120.65 Aligned_cols=114 Identities=21% Similarity=0.342 Sum_probs=79.4
Q ss_pred CCceeeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCc-eEEEEEeCCeE--EEEEeeCCCCCCCCCCCCCCCc
Q 032174 19 IDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPY-RGAWLWVGAEM--IHLMELPNPDPLSGRPEHGGRD 95 (146)
Q Consensus 19 ~~~~~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~ 95 (146)
..+.+.+|+||+|.|+|++++++||+++|||+............ ...|+..++.. +.+.. .+ ..+..
T Consensus 139 ~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~g~~ 208 (303)
T TIGR03211 139 RGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKAHDIAFVG---------DP-EPGKL 208 (303)
T ss_pred CCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCCcccceec---------CC-CCCce
Confidence 34567899999999999999999999999999865432222111 23444443221 11111 01 11336
Q ss_pred cEEEEEeCC---HHHHHHHHHHCCCeEeccC-----CCceEEEEECCCCCeEEEE
Q 032174 96 RHTCIAIRD---VSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFT 142 (146)
Q Consensus 96 ~hl~~~v~d---~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie~~ 142 (146)
+|+||.|+| +++++++|+++|+++...+ ...+.+|++|||||+||+.
T Consensus 209 ~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 209 HHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred EEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 899999996 5557889999999986543 1357899999999999997
No 66
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.78 E-value=1.1e-17 Score=108.30 Aligned_cols=104 Identities=18% Similarity=0.268 Sum_probs=76.2
Q ss_pred eeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCC-eEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCC-
Q 032174 27 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD- 104 (146)
Q Consensus 27 ~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d- 104 (146)
.||.|.|+|++++++||+++|||++..+... ..+|+...+ ...+.+... +....+++|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~--------~~~~~gl~Hiaf~v~~~ 67 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVG--------PASSSHFHHVNFMVTDI 67 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeec--------cCCCCceEEEEEECCCH
Confidence 4899999999999999999999998765321 346665432 222222211 1123568999999985
Q ss_pred --HHHHHHHHHHCCCeEeccC-----CCceEEEEECCCCCeEEEEe
Q 032174 105 --VSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 105 --~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie~~~ 143 (146)
+++++++|+++|+++...+ .+.+.+|++||+|+.||+..
T Consensus 68 ~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~ 113 (141)
T cd07258 68 DDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSF 113 (141)
T ss_pred HHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEe
Confidence 4677999999999986432 35688999999999999975
No 67
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.77 E-value=1.7e-17 Score=101.68 Aligned_cols=108 Identities=30% Similarity=0.442 Sum_probs=86.0
Q ss_pred eEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCCHHH
Q 032174 28 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 107 (146)
Q Consensus 28 hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d~~~ 107 (146)
|+.+.|+|++++++||+++||++....... .....+++..++..+++......... ....+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~~~~i~l~~~~~~~~~----~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLGGTRLELFEGDEPAPA----PSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecCCceEEEecCCCCCCc----ccCCCeeEEEEECCCHHH
Confidence 789999999999999999999998876542 12245666667778888887654321 223446899999999999
Q ss_pred HHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEE
Q 032174 108 LKMILDKAGISYTLSK----SGRPAIFTRDPDANALEF 141 (146)
Q Consensus 108 ~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~ 141 (146)
++++|.++|+.+..+. .+.+.+++.||+||.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 9999999999886543 467999999999999986
No 68
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=2.6e-17 Score=103.84 Aligned_cols=107 Identities=23% Similarity=0.319 Sum_probs=75.5
Q ss_pred eeeEEEEeCCHHHHHHHHhhh---cCCeeccccCCCCCCceEEEEEeC--CeEEEEEeeCCCCCCCCCCCCCCCccEEEE
Q 032174 26 VHHVGILCENLERSLEFYQNI---LGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCI 100 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~---lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 100 (146)
++|++|.|+|++++++||+++ ||++...+.. . ..+++..+ +..+.+....... +....+..|++|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~hi~f 70 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P---GAVGYGKGGGGPDFWVTKPFDGE-----PATAGNGTHVAF 70 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C---ceeEeccCCCCceEEEeccccCC-----CCCCCCceEEEE
Confidence 579999999999999999999 6898765431 1 12333333 4466665432211 111123479999
Q ss_pred EeCC---HHHHHHHHHHCCCeEeccC-------CCceEEEEECCCCCeEEEE
Q 032174 101 AIRD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFT 142 (146)
Q Consensus 101 ~v~d---~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DpdG~~ie~~ 142 (146)
.|++ +++++++++++|+.+...+ .+.+.+|+.|||||+|||+
T Consensus 71 ~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 71 AAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred ECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 9986 7889999999999876432 1335789999999999996
No 69
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.76 E-value=3.4e-17 Score=101.88 Aligned_cols=101 Identities=26% Similarity=0.401 Sum_probs=71.3
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-CCe--EEEEEeeCCCCCCCCCCCCCCCccEE--E
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAE--MIHLMELPNPDPLSGRPEHGGRDRHT--C 99 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l~~~~~~~~~~~~~~~~~~~~hl--~ 99 (146)
+|+||.|.|+|++++++||+ .|||++..+.+ ..++.. ++. ++.+.... . ....|+ +
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~ 62 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD-------GLELRTAGNDHRWARLLEGA--R---------KRLAYLSFG 62 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC-------ceEEEecCCCceEEEeecCC--C---------CceeeEEEE
Confidence 68999999999999999997 69999865421 122322 222 33332211 0 123444 4
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccC--CCceEEEEECCCCCeEEEEee
Q 032174 100 IAIRDVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 100 ~~v~d~~~~~~~l~~~G~~~~~~~--~g~~~~~~~DpdG~~ie~~~~ 144 (146)
+.++|+++++++|+++|+++...+ .+.+.+|+.|||||+|||...
T Consensus 63 ~~~~d~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 63 IFEDDFAAFARHLEAAGVALAAAPPGADPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred eEhhhHHHHHHHHHHcCCceecCCCcCCCCEEEEECCCCCEEEEecC
Confidence 445799999999999999986543 345679999999999999854
No 70
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=6.6e-17 Score=101.38 Aligned_cols=110 Identities=20% Similarity=0.269 Sum_probs=78.8
Q ss_pred EEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCC--CCCCCccEEEEEe---C
Q 032174 29 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRP--EHGGRDRHTCIAI---R 103 (146)
Q Consensus 29 v~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~hl~~~v---~ 103 (146)
|.|.|+|++++.+||+++||+++..+.. . ...++..++..++++..+........+ ..+.+..|++|.+ +
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~-~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN-D----GVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEE 76 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC-C----ceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHH
Confidence 6899999999999999999999876511 1 235566677777777644221111111 1222335677766 4
Q ss_pred CHHHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEe
Q 032174 104 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 104 d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~ 143 (146)
|++++++++++.|+++..++ .+++.++++||+||+|||..
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 89999999999999986543 35789999999999999974
No 71
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.75 E-value=5.5e-17 Score=116.30 Aligned_cols=108 Identities=20% Similarity=0.269 Sum_probs=79.7
Q ss_pred eeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEe
Q 032174 23 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 102 (146)
Q Consensus 23 ~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v 102 (146)
|.+++|+.|.|+|++++++||+++|||+...+... ...|+..++....+....... .+..|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGEN-----DALYLRLDSRAHRIAVHPGES---------DDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCCC-----ceEEEEcCCCceEEEEEECCc---------CCeeeEeeee
Confidence 46899999999999999999999999997654221 124556653322222222111 2357899999
Q ss_pred CC---HHHHHHHHHHCCCeEeccC-------CCceEEEEECCCCCeEEEEee
Q 032174 103 RD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 103 ~d---~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DpdG~~ie~~~~ 144 (146)
++ ++++.++|+++|+++...+ .+.+.++++|||||.+|++..
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~ 118 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYG 118 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEc
Confidence 97 8899999999999986532 346789999999999999863
No 72
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.75 E-value=8.2e-17 Score=115.71 Aligned_cols=114 Identities=27% Similarity=0.420 Sum_probs=78.8
Q ss_pred CceeeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCe--EEEEEeeCCCCCCCCCCCCCCCccE
Q 032174 20 DYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRH 97 (146)
Q Consensus 20 ~~~~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~h 97 (146)
.+.+.+++||+|.|+|++++++||+++||+++..............|+..++. .+.+. +..+.+.+|
T Consensus 131 ~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~H 199 (294)
T TIGR02295 131 GVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVHDIALT-----------NGNGPRLHH 199 (294)
T ss_pred CccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcCceEee-----------cCCCCceee
Confidence 35678999999999999999999999999998754332222222344433221 11111 011245799
Q ss_pred EEEEeCC---HHHHHHHHHHCCCe--EeccC-----CCceEEEEECCCCCeEEEEee
Q 032174 98 TCIAIRD---VSKLKMILDKAGIS--YTLSK-----SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 98 l~~~v~d---~~~~~~~l~~~G~~--~~~~~-----~g~~~~~~~DpdG~~ie~~~~ 144 (146)
+||.|+| +++++++|+++|++ +...+ .+.+.+|++||+||+||+++.
T Consensus 200 iaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 200 IAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEec
Confidence 9999997 55668999999987 43322 134679999999999999864
No 73
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.5e-16 Score=101.41 Aligned_cols=120 Identities=18% Similarity=0.265 Sum_probs=76.2
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCC----CCCCC-CCCccEEE
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLS----GRPEH-GGRDRHTC 99 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~-~~~~~hl~ 99 (146)
+..+..|.+++..+...||..+||++.....+.+... ..+|+......++|...-.....+ ..++. +.+.+|||
T Consensus 42 r~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~-~~v~~~~~~~~~ELthn~Gtes~~~~~~~ngN~~prGfgHIc 120 (170)
T KOG2944|consen 42 RVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHG-VSVFVFSRNAKLELTHNWGTESPPDQAYLNGNKEPRGFGHIC 120 (170)
T ss_pred hhccceeechhhhhHhhhHHHhhcccccccCccCCCC-CceEEecccCceeeecCCCCCCCcchhhcCCCCCCCccceEE
Confidence 3334444444444444444444444433333322222 237777777777877655443332 12222 23679999
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccCCCc---eEEEEECCCCCeEEEEeec
Q 032174 100 IAIRDVSKLKMILDKAGISYTLSKSGR---PAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 100 ~~v~d~~~~~~~l~~~G~~~~~~~~g~---~~~~~~DpdG~~ie~~~~~ 145 (146)
|.|+|+++++++|+++|+++......+ ..+|+.||||++||+....
T Consensus 121 i~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 121 IEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred EEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCCeEEEeecC
Confidence 999999999999999999987765443 5689999999999998653
No 74
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.73 E-value=2e-16 Score=113.46 Aligned_cols=113 Identities=15% Similarity=0.251 Sum_probs=78.3
Q ss_pred eeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCC--C-CCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEE
Q 032174 23 VVSVHHVGILCENLERSLEFYQNILGLEINEARPH--D-KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 99 (146)
Q Consensus 23 ~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~ 99 (146)
..+|+||+|.|+|++++++||+++|||++...... + ......+|+..++....+...... ...+.+|++
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~~~--------~~~~~~Hia 211 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAAGP--------SEKRLNHLM 211 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEecCC--------CCCceEEEE
Confidence 46899999999999999999999999998654221 1 111235666654332222111111 124578999
Q ss_pred EEeCCHHH---HHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEe
Q 032174 100 IAIRDVSK---LKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 100 ~~v~d~~~---~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~ 143 (146)
|.|+|.++ ++++|+++|+....+. .+.+.+|++||+||+||+..
T Consensus 212 f~v~d~~~v~~~~~~l~~~G~~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 212 LEVDTLDDVGLALDRVDADGIVASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred EEcCCHHHHHHHHHHHHHCCCEEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 99997766 7999999999332221 34678999999999999975
No 75
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.73 E-value=2e-16 Score=113.72 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=79.5
Q ss_pred eeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeC-C-eEEEEEeeCCCCCCCCCCCCCCCccEEEE
Q 032174 23 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-A-EMIHLMELPNPDPLSGRPEHGGRDRHTCI 100 (146)
Q Consensus 23 ~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 100 (146)
+.+++|+.|.|+|++++++||+++|||++..... ..+++... . ....+...... ..+..|++|
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~~---------~~~~~hiaf 66 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKAP---------SAALSYIGF 66 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeCC---------CcCccEEEE
Confidence 6789999999999999999999999999876532 23445432 1 11122211111 123689999
Q ss_pred EeC---CHHHHHHHHHHCCCeEeccC--CCceEEEEECCCCCeEEEEee
Q 032174 101 AIR---DVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 101 ~v~---d~~~~~~~l~~~G~~~~~~~--~g~~~~~~~DpdG~~ie~~~~ 144 (146)
.|+ |+++++++|+++|+.+...+ .+.+.+|++|||||.|||++.
T Consensus 67 ~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~~~~~~~~~DPdG~~iEl~~~ 115 (294)
T TIGR02295 67 RVSKEEDLDKAADFFQKLGHPVRLVRDGGQPEALRVEDPFGYPIEFYFE 115 (294)
T ss_pred EeCCHHHHHHHHHHHHhcCCcEEeecCCCCceEEEEECCCCCEEEEEEc
Confidence 997 78999999999999986533 346899999999999999873
No 76
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.72 E-value=2.9e-16 Score=113.37 Aligned_cols=106 Identities=21% Similarity=0.274 Sum_probs=79.1
Q ss_pred eeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-C---CeEEEEEeeCCCCCCCCCCCCCCCccEE
Q 032174 23 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-G---AEMIHLMELPNPDPLSGRPEHGGRDRHT 98 (146)
Q Consensus 23 ~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~~~~~~~~~hl 98 (146)
+.+++|+.|.|+|++++++||+++||+++..+... .+++.. + ...+.+.. . ...+..|+
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~--~---------~~~g~~hi 64 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTE--A---------DTAGLDHM 64 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeecc--C---------CCCceeEE
Confidence 56899999999999999999999999998765331 244443 1 11222211 1 11346899
Q ss_pred EEEeC---CHHHHHHHHHHCCCeEeccC-----CCceEEEEECCCCCeEEEEeec
Q 032174 99 CIAIR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 99 ~~~v~---d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
+|.|+ |+++++++|+++|+++...+ ..++.+|+.|||||.|||.+..
T Consensus 65 af~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~ 119 (303)
T TIGR03211 65 AFKVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEK 119 (303)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEcc
Confidence 99998 78999999999999986432 2457899999999999999743
No 77
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.71 E-value=5.5e-17 Score=100.63 Aligned_cols=93 Identities=26% Similarity=0.397 Sum_probs=76.7
Q ss_pred eeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCC--eEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCC
Q 032174 27 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 104 (146)
Q Consensus 27 ~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d 104 (146)
+||++.|+|++++++||+++||++............+.+++..++ ..++|+.+....... ...+.+++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~--~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPL--DRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHH--HHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCccc--ccCCCCEEEEEEEeCC
Confidence 699999999999999999999998876665556667788888877 599999977754211 1266778999999999
Q ss_pred HHHHHHHHHHCCCeEec
Q 032174 105 VSKLKMILDKAGISYTL 121 (146)
Q Consensus 105 ~~~~~~~l~~~G~~~~~ 121 (146)
+++..++|+++|+++..
T Consensus 79 ~d~~~~~l~~~G~~~~~ 95 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLD 95 (109)
T ss_dssp HHHHHHHHHHTTECEEE
T ss_pred HHHHHHHHHHCCCEEcc
Confidence 99999999999999764
No 78
>PLN02300 lactoylglutathione lyase
Probab=99.69 E-value=9.9e-16 Score=109.88 Aligned_cols=118 Identities=20% Similarity=0.241 Sum_probs=85.1
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCC----eEEEEEeeCCCCCCCCCCCCCCCccEEE
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTC 99 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hl~ 99 (146)
..+.|+.|.|+|++++.+||+++||+++......+...+..+++..++ ..+++...... ..+..+.+..|++
T Consensus 153 ~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~----~~~~~g~~~~~i~ 228 (286)
T PLN02300 153 EPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGV----TEYTKGNAYAQIA 228 (286)
T ss_pred CcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCC----CccccCCceeEEE
Confidence 468899999999999999999999999975433333334445554322 23444321111 1123345568999
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccC---CC--ceEEEEECCCCCeEEEEeec
Q 032174 100 IAIRDVSKLKMILDKAGISYTLSK---SG--RPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 100 ~~v~d~~~~~~~l~~~G~~~~~~~---~g--~~~~~~~DpdG~~ie~~~~~ 145 (146)
|.|+|+++.+++++++|+++..++ ++ .+.+++.|||||.++|++..
T Consensus 229 ~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~ 279 (286)
T PLN02300 229 IGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNI 279 (286)
T ss_pred EecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccc
Confidence 999999999999999999987643 22 47889999999999999864
No 79
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.63 E-value=2.7e-14 Score=89.51 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=81.7
Q ss_pred eeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCC-eEEEEEeeCCCCCCCCCCCCCCCccEEEEE
Q 032174 23 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 101 (146)
Q Consensus 23 ~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 101 (146)
...+.|..|.|.|++++++||+++||++..+...... ...+.+..++ .....+..... .++. .....+.|.
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~--~~y~~f~~~~~~~gG~l~~~~~-----~~p~-~~~~~iy~~ 78 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGE--MRYAVFPADGAGAGGGLMARPG-----SPPG-GGGWVIYFA 78 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCC--ceEEEEECCCccccceeccCCc-----CCCC-CCCEEEEEe
Confidence 3568899999999999999999999999887644211 2223333332 11111111111 1111 234678999
Q ss_pred eCCHHHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEeec
Q 032174 102 IRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 102 v~d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
|+|+++..+|..+.|..+..++ .+++.+.+.||+||+|-|+++.
T Consensus 79 v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 79 VDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred cCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 9999999999999999987654 3789999999999999999875
No 80
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.62 E-value=2.4e-14 Score=99.12 Aligned_cols=114 Identities=25% Similarity=0.377 Sum_probs=88.3
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCe-EEEEEeeCCCCCCCCCCCCCCCccEEEEEe
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAI 102 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v 102 (146)
..+..+.|.|+|++++..||++++|+++..+.. ..+-+..++. .+.|.+.++... .+....|+.|+||.+
T Consensus 9 ~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~~LL~L~q~~~a~~---~~~~~aGLyH~AfLl 79 (265)
T COG2514 9 TFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGTPLLTLEQFPDARR---PPPRAAGLYHTAFLL 79 (265)
T ss_pred cEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCEEEEEEEeCCCCCC---CCccccceeeeeeec
Confidence 457789999999999999999999999998765 3355666766 666666554432 224456689999999
Q ss_pred C---CHHHHHHHHHHCCCeEec--cCCCceEEEEECCCCCeEEEEeecC
Q 032174 103 R---DVSKLKMILDKAGISYTL--SKSGRPAIFTRDPDANALEFTQVDG 146 (146)
Q Consensus 103 ~---d~~~~~~~l~~~G~~~~~--~~~g~~~~~~~DpdG~~ie~~~~~~ 146 (146)
+ |+..++.++.+.|+.+.. +..-...+|+.||+||-||++...|
T Consensus 80 P~r~~L~~~l~hl~~~~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 80 PTREDLARVLNHLAEEGIPLVGASDHLVSEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred CCHHHHHHHHHHHHhcCCcccccCcchhheeeeecCCCCCeEEEEecCC
Confidence 9 677778888999999863 3345788999999999999987643
No 81
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.61 E-value=2e-14 Score=88.34 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=85.9
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCC---CCCCCCCccEEEEE
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG---RPEHGGRDRHTCIA 101 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~hl~~~ 101 (146)
....|+|.|+|++++++||+. |||+.......+. ..+.+..++..+.|........-.. .........-+||.
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls 78 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLS 78 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEec
Confidence 456799999999999999977 9999887554333 3455555677777776554322111 11222334678888
Q ss_pred eC---CHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCeEEEEeecC
Q 032174 102 IR---DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQVDG 146 (146)
Q Consensus 102 v~---d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ie~~~~~~ 146 (146)
+. ++|+++++.++.|.++..++ ...+...+.|||||.||+..++|
T Consensus 79 ~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 79 AGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred cCcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEeCH
Confidence 87 78999999999999986554 34677889999999999998875
No 82
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.55 E-value=2.3e-13 Score=82.45 Aligned_cols=111 Identities=25% Similarity=0.446 Sum_probs=75.1
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeC--CeEEEEEeeCCCCCCCCCC--CCCCCccEEEE-
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRP--EHGGRDRHTCI- 100 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~--~~~~~~~hl~~- 100 (146)
+-|+++.|+|+++++.||.++||++.....+ .|+.++ +.++.....+..+.....+ .++.-..|++.
T Consensus 5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvV 76 (138)
T COG3565 5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTD--------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVV 76 (138)
T ss_pred ceEEeeeccccHHHHhhhhhhcccccccccc--------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceEE
Confidence 5689999999999999999999999877543 344332 3333333323222111111 12222245554
Q ss_pred -EeCCHHHHHHHHHHCCCeEeccC--------CCceEEEEECCCCCeEEEEee
Q 032174 101 -AIRDVSKLKMILDKAGISYTLSK--------SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 101 -~v~d~~~~~~~l~~~G~~~~~~~--------~g~~~~~~~DpdG~~ie~~~~ 144 (146)
.++|+-++.++|.+.|+....++ ..++.+++.||.||.+|+...
T Consensus 77 l~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 77 LPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred EEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 45699999999999999875443 347889999999999999654
No 83
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.50 E-value=1.5e-13 Score=93.19 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=72.0
Q ss_pred eeeeeeEEEEeC--CHHHHHHHHhhhcCCeeccccCCCC--CCceEEEEEe--CCeEEEEEeeCCC-CCC-CC---CCCC
Q 032174 23 VVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDK--LPYRGAWLWV--GAEMIHLMELPNP-DPL-SG---RPEH 91 (146)
Q Consensus 23 ~~~l~hv~l~v~--d~~~~~~FY~~~lg~~~~~~~~~~~--~~~~~~~~~~--~~~~~~l~~~~~~-~~~-~~---~~~~ 91 (146)
+.+++||++.|+ |++++++||+++|||+......... .......+.. ++..+.|...... ... .. ....
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~ 80 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYG 80 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhC
Confidence 357999999999 9999999999999999876554322 2334445554 3457777765442 111 00 1123
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHCCCeEecc
Q 032174 92 GGRDRHTCIAIRDVSKLKMILDKAGISYTLS 122 (146)
Q Consensus 92 ~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~ 122 (146)
+.|..|+||.|+|+++.+++|+++|+++...
T Consensus 81 G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~ 111 (191)
T cd07250 81 GAGVQHIALATDDIFATVAALRARGVEFLPI 111 (191)
T ss_pred CCceeEEEEECCCHHHHHHHHHHcCCeeccC
Confidence 5678999999999999999999999998543
No 84
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.42 E-value=2.1e-11 Score=77.56 Aligned_cols=106 Identities=18% Similarity=0.139 Sum_probs=75.5
Q ss_pred EEEe-CCHHHHHHHHhhhcCCeeccccCC----------CCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEE
Q 032174 30 GILC-ENLERSLEFYQNILGLEINEARPH----------DKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 98 (146)
Q Consensus 30 ~l~v-~d~~~~~~FY~~~lg~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl 98 (146)
-|.+ .|.+++++||+++||+++...... ....+..+.+..++..+.+......... ..+...++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~~-----~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFPF-----TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCCC-----CCCCCEEE
Confidence 4666 899999999999999999865431 1122345667788887777664433211 11223679
Q ss_pred EEEeCC---HHHHHHHHHHCCCeEecc----CCCceEEEEECCCCCeEEE
Q 032174 99 CIAIRD---VSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEF 141 (146)
Q Consensus 99 ~~~v~d---~~~~~~~l~~~G~~~~~~----~~g~~~~~~~DpdG~~ie~ 141 (146)
++.++| +++++++|.+.| .+..+ ++|.+.++++||+|+.|+|
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~i 127 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQI 127 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEEe
Confidence 999985 777889987777 55433 3677899999999999987
No 85
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.37 E-value=8e-12 Score=92.17 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=73.4
Q ss_pred CCceeeeeeeEEEEeC--CHHHHHHHHhhhcCCeeccccCCC--CCCceEEEEEe--CCeEEEEEeeCCCC-CCC-C---
Q 032174 19 IDYGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHD--KLPYRGAWLWV--GAEMIHLMELPNPD-PLS-G--- 87 (146)
Q Consensus 19 ~~~~~~~l~hv~l~v~--d~~~~~~FY~~~lg~~~~~~~~~~--~~~~~~~~~~~--~~~~~~l~~~~~~~-~~~-~--- 87 (146)
..+.+.+++||++.|. |++++++||+++|||+........ ........+.. ++..++|..+.... ... .
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl 231 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFL 231 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHH
Confidence 4567899999999999 999999999999999987644321 11222222332 44678887643221 111 0
Q ss_pred CCCCCCCccEEEEEeCCHHHHHHHHHHCCCeEecc
Q 032174 88 RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLS 122 (146)
Q Consensus 88 ~~~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~ 122 (146)
....+.|+.|+||.|+|+++.+++|+++|+++...
T Consensus 232 ~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~ 266 (353)
T TIGR01263 232 EFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDT 266 (353)
T ss_pred HHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcC
Confidence 11236778999999999999999999999987644
No 86
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.36 E-value=3.4e-11 Score=88.87 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=72.8
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCC--CCCCCCCccEEEEEe
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 102 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~hl~~~v 102 (146)
+++||.+.|+|++++++||.+.|||+......... ....+.+..++..++|........+.. ...++.+..|+||.|
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~-~~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~V 80 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHR-EKASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFRV 80 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCC-ceeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEEE
Confidence 68999999999999999999999999887521111 113344566888888887654432111 123567789999999
Q ss_pred CCHHHHHHHHHHCCCeEecc
Q 032174 103 RDVSKLKMILDKAGISYTLS 122 (146)
Q Consensus 103 ~d~~~~~~~l~~~G~~~~~~ 122 (146)
+|+++++++++++|+.+..+
T Consensus 81 ~Dv~~a~~~l~~~Ga~~v~~ 100 (353)
T TIGR01263 81 DDAAAAFEAAVERGAEPVQA 100 (353)
T ss_pred CCHHHHHHHHHHCCCEeccC
Confidence 99999999999999998654
No 87
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.31 E-value=3.2e-10 Score=72.26 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=83.5
Q ss_pred EEEeC-CHHHHHHHHhhhcCCeeccccCCCC----------CCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEE
Q 032174 30 GILCE-NLERSLEFYQNILGLEINEARPHDK----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 98 (146)
Q Consensus 30 ~l~v~-d~~~~~~FY~~~lg~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl 98 (146)
-|..+ |-+++++||+++||.+...+..... ..+-.+-+..++..+.+........ ....++.-.-|
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~---~~~~~~~s~~l 81 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMG---ATEGGGTSLSL 81 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccC---cccCCCeeEEE
Confidence 35677 9999999999999999987665444 3455677888888776655443322 11111222457
Q ss_pred EEEeCCHHHHHHHHHHCCCeEeccC----CCceEEEEECCCCCeEEEEeec
Q 032174 99 CIAIRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 99 ~~~v~d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
.+.++|++++++++.+.|+++..+. +|.+...++||.|+.|.|....
T Consensus 82 ~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 82 DLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecCc
Confidence 7777799999999999998876553 7889999999999999987654
No 88
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.30 E-value=1.1e-11 Score=77.83 Aligned_cols=119 Identities=23% Similarity=0.325 Sum_probs=71.9
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCce-EEEEEe-CC-eEEEEEeeC-------CCC-CCCCCCCCC-
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYR-GAWLWV-GA-EMIHLMELP-------NPD-PLSGRPEHG- 92 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~l~~~~-------~~~-~~~~~~~~~- 92 (146)
+++|++|.|+|++++++||+++||++............. ...+.. .. ......... ... .........
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 689999999999999999999999999886553322110 111111 11 000110100 000 000000111
Q ss_pred -CCccEEEEEeCC---HHHHHHHHHHCCCeEeccC--CCceEEEEECCCCCeEEEEe
Q 032174 93 -GRDRHTCIAIRD---VSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 93 -~~~~hl~~~v~d---~~~~~~~l~~~G~~~~~~~--~g~~~~~~~DpdG~~ie~~~ 143 (146)
.+..|+++.+++ ..+....+...|..+.... .....+|+.||||++||+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEPGRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEeeCCCCCEEEeecCCCcceEEEEECCCCcEEEeeC
Confidence 235799999997 6666777777788865432 12238999999999999974
No 89
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=99.24 E-value=1.4e-10 Score=83.73 Aligned_cols=104 Identities=18% Similarity=0.209 Sum_probs=71.4
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeC-
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 103 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~- 103 (146)
+..||+|.|+|++++++||+++|++.. ...+ .. .+ + ++..+.+..... +. ......-+||.++
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde--~a---~c-m--~dtI~vMllt~~-D~------~~~~evLl~Ls~~S 310 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD--KL---FL-L--GKTSLYLQQTKA-EK------KNRGTTTLSLELEC 310 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC--cc---cc-c--cCcEEEEEecCC-CC------CCcceEEEEeccCC
Confidence 466899999999999999999988874 3222 11 11 1 444444443333 11 1123466999998
Q ss_pred --CHHHHHHHHHHCCCeEeccC-CCceEEEEECCCCCeEEEEee
Q 032174 104 --DVSKLKMILDKAGISYTLSK-SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 104 --d~~~~~~~l~~~G~~~~~~~-~g~~~~~~~DpdG~~ie~~~~ 144 (146)
++|++++++.+.|.....++ +.+..-.|.|||||.||+++.
T Consensus 311 re~VD~lv~~A~aaGG~~~~~~~D~Gf~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 311 EHDFVRFLRRWEMLGGELGEQADGHFPLRLVFDLDGHIWVVSCV 354 (357)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcccccCcceeECCCCCEEEEEEE
Confidence 68899999999998664443 222267789999999999875
No 90
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=2e-10 Score=78.38 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=84.0
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCC-----------CCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCC
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHG 92 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 92 (146)
.++-|+.+.|.|..+++.||+++||+++.+.++.+. .....+++..|...-++..-...+-.......+
T Consensus 16 ~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~YelG 95 (299)
T KOG2943|consen 16 RRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYELG 95 (299)
T ss_pred hheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceecc
Confidence 467789999999999999999999999987655433 233345666664433333323333333455666
Q ss_pred CCccEEEEEeCCHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEEEeec
Q 032174 93 GRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 93 ~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
....|+.+.++|+-..++.+...|. ...+...++++||||+.+++.+..
T Consensus 96 ndfg~i~I~s~dv~~~ve~v~~p~~----~~~g~~~~~v~dPdGykF~l~~~~ 144 (299)
T KOG2943|consen 96 NDFGGITIASDDVFSKVEKVNAPGG----KGSGCGIAFVKDPDGYKFYLIDRG 144 (299)
T ss_pred CCcccEEEeHHHHHHHHHHhcCcCC----cccceEEEEEECCCCcEEEEeccC
Confidence 6778999999999888888877654 223566789999999999998643
No 91
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.18 E-value=1.9e-10 Score=85.30 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=75.2
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCC-----CCceEEEEEeCC--eEEEEEeeCCC---CCCCC---
Q 032174 21 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----LPYRGAWLWVGA--EMIHLMELPNP---DPLSG--- 87 (146)
Q Consensus 21 ~~~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~l~~~~~~---~~~~~--- 87 (146)
..+..|+||++.|.+++.++.||+++|||+......... ..++...+..++ ..+.|..+... ..+..
T Consensus 176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL 255 (398)
T PLN02875 176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYL 255 (398)
T ss_pred CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHH
Confidence 457899999999999999999999999998875443221 224555565543 57888886532 11111
Q ss_pred CCCCCCCccEEEEEeCCHHHHHHHHHHC----CCeEec
Q 032174 88 RPEHGGRDRHTCIAIRDVSKLKMILDKA----GISYTL 121 (146)
Q Consensus 88 ~~~~~~~~~hl~~~v~d~~~~~~~l~~~----G~~~~~ 121 (146)
....|.|++||||.++|+.+.+++|+++ |+++..
T Consensus 256 ~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~ 293 (398)
T PLN02875 256 EHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMP 293 (398)
T ss_pred HhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCC
Confidence 1234678999999999999999999999 999765
No 92
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.95 E-value=5.5e-09 Score=74.14 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=76.0
Q ss_pred CCCceeeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCc--eEEEEEeCCeEEEEEeeCCCCCCC---CCCCCC
Q 032174 18 KIDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPY--RGAWLWVGAEMIHLMELPNPDPLS---GRPEHG 92 (146)
Q Consensus 18 ~~~~~~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~ 92 (146)
+...++..++||.+.|.|...+..||+..|||+............ ....++.|...+.+...-.+..+. ..+.++
T Consensus 10 ~~~g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hg 89 (381)
T KOG0638|consen 10 PEAGKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHG 89 (381)
T ss_pred ccccceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcc
Confidence 344568899999999999999999999999999876443222211 122233454554444443333221 234677
Q ss_pred CCccEEEEEeCCHHHHHHHHHHCCCeEeccC
Q 032174 93 GRDRHTCIAIRDVSKLKMILDKAGISYTLSK 123 (146)
Q Consensus 93 ~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~ 123 (146)
.+..-+||+|+|.+++.+.+.++|+.+..++
T Consensus 90 dgvkdvafeVeD~da~~~~~va~Ga~v~~~p 120 (381)
T KOG0638|consen 90 DGVKDVAFEVEDADAIFQEAVANGAKVVRPP 120 (381)
T ss_pred cchhceEEEecchHHHHHHHHHcCCcccCCc
Confidence 8888999999999999999999999987765
No 93
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.91 E-value=3.2e-09 Score=71.03 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=57.9
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCC--CCC------CCCCCccE
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLS--GRP------EHGGRDRH 97 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~------~~~~~~~h 97 (146)
|+|+.+.|+|++++.++|++.|||.+.........+.....+.+++..+||+...+..... ... ..+.+...
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYG 80 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEE
Confidence 6899999999999999998899999987655555455566667777799999965443221 111 13567789
Q ss_pred EEEEeCCHHHHHHHHHHCCCe
Q 032174 98 TCIAIRDVSKLKMILDKAGIS 118 (146)
Q Consensus 98 l~~~v~d~~~~~~~l~~~G~~ 118 (146)
+|+.++|+++..++|.+.|+.
T Consensus 81 ~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 81 WALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp EEEE-S-HHHHHHHHHTTT-E
T ss_pred EEEecCCHHHHHHHHHhcCCC
Confidence 999999999999999999986
No 94
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.88 E-value=2.7e-08 Score=69.41 Aligned_cols=97 Identities=22% Similarity=0.255 Sum_probs=67.8
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCC-CCCCCccEEEEEe
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRP-EHGGRDRHTCIAI 102 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~hl~~~v 102 (146)
..|.||.|.|.|++++.+||+++|||++..+.+ ...|+..|+...++....-........ ....+...+.+.+
T Consensus 167 t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YHHHia~N~W~s~~~~~~~~~~~GLa~~~i~~ 240 (265)
T COG2514 167 TIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYHHHLAANTWNSRGARPRNANASGLAWLEIHT 240 (265)
T ss_pred cEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcceeEEEeccccCCCCCCCCCCCCcceEEEEc
Confidence 569999999999999999999999999998733 347788888877776655443222222 2345667888888
Q ss_pred CCHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEEE
Q 032174 103 RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 142 (146)
Q Consensus 103 ~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~~ 142 (146)
++-..+....... +||.|+.|.+.
T Consensus 241 ~~~~~l~~~~~~~----------------~Dp~G~~i~~~ 264 (265)
T COG2514 241 PDPEKLDATGTRL----------------TDPWGIVIRVV 264 (265)
T ss_pred CCcccccccccce----------------ecCCCceEEEe
Confidence 7643332111111 89999999875
No 95
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.83 E-value=2.6e-08 Score=63.83 Aligned_cols=121 Identities=11% Similarity=0.028 Sum_probs=79.6
Q ss_pred CCceeeeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEE
Q 032174 19 IDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 98 (146)
Q Consensus 19 ~~~~~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl 98 (146)
+|+.+.++.+|.+.++|.+++..|++ .|||+...+-... ....++.|+..+.|-..++.........++.+..-+
T Consensus 3 nP~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk----~v~l~rQG~I~~vln~ep~s~a~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 3 NPLGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK----DVTLYRQGDINFVLNSEPDSFAAEFAAQHGPSVCAI 77 (139)
T ss_dssp -TT-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC----SEEEEEETTEEEEEEEESTSCHHHHHHHHSSEEEEE
T ss_pred CCCCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc----ceEEEEeCCEEEEEeCCCcchHHHHHHhcCCEEEEE
Confidence 57889999999999999888888885 6999998754321 345567798888887744321111112456777899
Q ss_pred EEEeCCHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCeEEEEee
Q 032174 99 CIAIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 99 ~~~v~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ie~~~~ 144 (146)
+|+|+|..++++++.++|.+....+ .....--++-+.|.++-|++.
T Consensus 78 afrV~Da~~A~~rA~~~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVdr 126 (139)
T PF14696_consen 78 AFRVDDAAAAYERAVALGAEPVQEPTGPGELNIPAIRGIGGSLHYFVDR 126 (139)
T ss_dssp EEEES-HHHHHHHHHHTT--EEEEEEETT-BEEEEEE-CCC-EEEEEE-
T ss_pred EEEeCCHHHHHHHHHHcCCcCcccCCCCCcEeeeeEEccCCCEEEEEec
Confidence 9999999999999999999876543 223444566677777766654
No 96
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=3.6e-08 Score=67.59 Aligned_cols=111 Identities=23% Similarity=0.318 Sum_probs=71.8
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeC-
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 103 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~- 103 (146)
.+..|.|.|.|++++++||+++||+++.+.... ...+.+..++.+..|.-....+. -....+...++|.++
T Consensus 149 pv~~V~l~VgdL~ks~kyw~~~lgM~ilekeek----~t~~~mgYgd~q~~LElt~~~~~----id~~kg~griafaip~ 220 (299)
T KOG2943|consen 149 PVLQVMLNVGDLQKSIKYWEKLLGMKILEKEEK----YTRARMGYGDEQCVLELTYNYDV----IDRAKGFGRIAFAIPT 220 (299)
T ss_pred CeEEEEEEehhHHHHHHHHHHHhCcchhhhhhh----hhhhhhccCCcceEEEEEeccCc----ccccccceeEEEeccc
Confidence 467899999999999999999999999884321 12344555555444433222221 111123345666665
Q ss_pred -CHHHHHHHHHHCCCeE----ec-cCC---CceEEEEECCCCCeEEEEe
Q 032174 104 -DVSKLKMILDKAGISY----TL-SKS---GRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 104 -d~~~~~~~l~~~G~~~----~~-~~~---g~~~~~~~DpdG~~ie~~~ 143 (146)
++..+-+.++..+-++ .. +.+ ....+.+.||||+.|-|+-
T Consensus 221 d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVd 269 (299)
T KOG2943|consen 221 DDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVD 269 (299)
T ss_pred cccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEec
Confidence 7877877787765443 22 112 3577889999999998864
No 97
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.73 E-value=1.9e-06 Score=53.20 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=65.6
Q ss_pred eeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe--CCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCC
Q 032174 27 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV--GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 104 (146)
Q Consensus 27 ~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d 104 (146)
.+-.|+|+|-+.-++||.+.|||++..+.. ..+++.. +...+.|-..|....+. -.....+.++.+.|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~--V~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRA--VEGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B----SSS-SEEEEEEEESS
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCcccccc--ccCcceeeEEEEEcCC
Confidence 457899999999999999999999998654 3354544 23467777666554211 1112345789999988
Q ss_pred HHHHHHHHHHCCCeEe--ccCCCceEEEEECCCCCeEEEEee
Q 032174 105 VSKLKMILDKAGISYT--LSKSGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 105 ~~~~~~~l~~~G~~~~--~~~~g~~~~~~~DpdG~~ie~~~~ 144 (146)
..++ +.|..+|..+. .....++.|-..+|+|+.+.++.-
T Consensus 74 ~~EI-e~LLar~~~~~~l~kg~~gyAfe~vSPEgd~~llhaE 114 (125)
T PF14506_consen 74 PKEI-EALLARGAQYDRLYKGKNGYAFEAVSPEGDRFLLHAE 114 (125)
T ss_dssp HHHH-HHHHHC-S--SEEEE-SSSEEEEEE-TT--EEEEE--
T ss_pred HHHH-HHHHhcccccceeEEcCCceEEEEECCCCCEEEEEEc
Confidence 7776 55666665543 234568999999999999998754
No 98
>PRK10148 hypothetical protein; Provisional
Probab=98.73 E-value=2.5e-06 Score=55.53 Aligned_cols=108 Identities=14% Similarity=0.036 Sum_probs=71.0
Q ss_pred EEEeC-CHHHHHHHHhhhcCCeeccccC-----C---------------CCCCceEEEEEeCCeEEEEEeeCCCCCCCCC
Q 032174 30 GILCE-NLERSLEFYQNILGLEINEARP-----H---------------DKLPYRGAWLWVGAEMIHLMELPNPDPLSGR 88 (146)
Q Consensus 30 ~l~v~-d~~~~~~FY~~~lg~~~~~~~~-----~---------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 88 (146)
-|..+ |-+++++||+++||.++..... . ....+-.+.+.+++..+.+.......
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~----- 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSG----- 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCc-----
Confidence 34554 8999999999999988764321 0 11234467778888766554321111
Q ss_pred CCCCCCccEEEEEeCCHHH---HHHHHHHCCCeEecc----CCCceEEEEECCCCCeEEEEee
Q 032174 89 PEHGGRDRHTCIAIRDVSK---LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 89 ~~~~~~~~hl~~~v~d~~~---~~~~l~~~G~~~~~~----~~g~~~~~~~DpdG~~ie~~~~ 144 (146)
+.. ....+|++.++|.++ ++++| +.|.++..+ .++.+...++||.|+.|.|...
T Consensus 81 ~~~-~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 81 KAH-YSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred CCC-CCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEec
Confidence 111 123678888888877 44555 577777544 3677889999999999998754
No 99
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.69 E-value=7.4e-07 Score=66.51 Aligned_cols=119 Identities=14% Similarity=0.136 Sum_probs=81.3
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCC--CCCCceEEEEEeCCeEEEEEeeCCCC--C----C------C---C-
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPH--DKLPYRGAWLWVGAEMIHLMELPNPD--P----L------S---G- 87 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~--~----~------~---~- 87 (146)
++||.+.|.|..++..||+..|||+....... .........++.|+..+.+....... . + + .
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 58999999999999999999999998764432 11122334456677777666653221 0 0 0 0
Q ss_pred -----CCCCCCCccEEEEEeCCHHHHHHHHHHCCCeEeccCCC---------ceEEEEECCCCCeEEEEee
Q 032174 88 -----RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSG---------RPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 88 -----~~~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~g---------~~~~~~~DpdG~~ie~~~~ 144 (146)
...++.+..-++|+|+|++++++++.++|+.+..++.+ ....-+.-+.|..+-|++.
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr 151 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSY 151 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEcc
Confidence 11456777899999999999999999999987654311 2334466677777777664
No 100
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.36 E-value=6.8e-07 Score=64.63 Aligned_cols=103 Identities=16% Similarity=0.214 Sum_probs=71.1
Q ss_pred CCceeeeeeeEEEEe--CCHHHHHHHHhhhcCCeeccccCCCC--CCceEEEEEe--CCeEEEEEeeCCCCCCCC---CC
Q 032174 19 IDYGVVSVHHVGILC--ENLERSLEFYQNILGLEINEARPHDK--LPYRGAWLWV--GAEMIHLMELPNPDPLSG---RP 89 (146)
Q Consensus 19 ~~~~~~~l~hv~l~v--~d~~~~~~FY~~~lg~~~~~~~~~~~--~~~~~~~~~~--~~~~~~l~~~~~~~~~~~---~~ 89 (146)
....+..|+|++..| .+++....||+++|+|+.....+... ..++.-.+.. |..++-|-...+...... ..
T Consensus 161 ~~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~ 240 (363)
T COG3185 161 GGVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLRE 240 (363)
T ss_pred cccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHH
Confidence 344567899998877 59999999999999999886544222 2223222222 333555555444332111 12
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHCCCeEec
Q 032174 90 EHGGRDRHTCIAIRDVSKLKMILDKAGISYTL 121 (146)
Q Consensus 90 ~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~ 121 (146)
..|.|+.||+|.++|+-+.+++|++.|+++..
T Consensus 241 y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ 272 (363)
T COG3185 241 YRGEGIQHIAFGTDDIYATVAALRERGVKFLP 272 (363)
T ss_pred hCCCcceEEEecccHHHHHHHHHHHcCCccCC
Confidence 46788999999999999999999999999754
No 101
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.77 E-value=0.00071 Score=49.40 Aligned_cols=114 Identities=11% Similarity=0.018 Sum_probs=77.5
Q ss_pred CCCCceeeeeeeEEEEeCCH-HHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCc
Q 032174 17 DKIDYGVVSVHHVGILCENL-ERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRD 95 (146)
Q Consensus 17 ~~~~~~~~~l~hv~l~v~d~-~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 95 (146)
...|+...++.+|.+.|.|. ++..+++ ..|||.....-... ...-++.|+..+.+-..+..........++.+.
T Consensus 14 ~~~P~~~~GfeFvEf~~~d~~~~l~~l~-~~lGF~~~~~Hrsk----~v~l~rQGdinlvvn~~~~s~a~~f~~~Hgps~ 88 (363)
T COG3185 14 LANPEGTDGFEFVEFAVPDPQEALGALL-GQLGFTAVAKHRSK----AVTLYRQGDINLVVNAEPDSFAAEFLDKHGPSA 88 (363)
T ss_pred ccCCCCCCceeEEEEecCCHHHHHHHHH-HHhCcccccccccc----ceeEEEeCCEEEEEcCCCcchhhHHHHhcCCch
Confidence 34566788999999999999 5555555 55999877533211 223345677777666554431111122455566
Q ss_pred cEEEEEeCCHHHHHHHHHHCCCeEeccC-------------CCceEEEEECCC
Q 032174 96 RHTCIAIRDVSKLKMILDKAGISYTLSK-------------SGRPAIFTRDPD 135 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~~G~~~~~~~-------------~g~~~~~~~Dpd 135 (146)
.-++|.|+|...++++..+.|.+....+ .|+...|+.|.+
T Consensus 89 ~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~ 141 (363)
T COG3185 89 CAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRY 141 (363)
T ss_pred heeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccC
Confidence 7899999999999999999998542211 367888998888
No 102
>PF15067 FAM124: FAM124 family
Probab=97.76 E-value=0.0005 Score=47.43 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=61.9
Q ss_pred eeeEEEEeC--CHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe---CCeEEEEEeeCCCCCCCCCCCCCCCccEEEE
Q 032174 26 VHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV---GAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 100 (146)
Q Consensus 26 l~hv~l~v~--d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 100 (146)
+--++|.|+ |.+.+++||+-+|+-+...... .-+++.+ .+..+.|-...-+......|.. ..-+.|
T Consensus 129 ilRftly~~~~N~~d~vr~Yelil~~~~~~~k~------~FC~F~lys~~~~~iQlsLK~lp~~~~p~p~e---savLqF 199 (236)
T PF15067_consen 129 ILRFTLYCSFDNYEDMVRFYELILQREPTQQKE------DFCFFTLYSQPGLDIQLSLKQLPPGMSPEPTE---SAVLQF 199 (236)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHhccCcceeeC------CcEEEEEecCCCeEEEEEeccCCCCCCccccc---ceEEEE
Confidence 345888998 9999999999999998866433 1233333 3334444332221111112222 256999
Q ss_pred EeCCHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEE
Q 032174 101 AIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 141 (146)
Q Consensus 101 ~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~ 141 (146)
.|.|+.+++.-|-.--.+++..+ --..|||||.|=+
T Consensus 200 ~V~~igqLvpLLPnpc~PIS~~r-----WqT~D~DGNkILL 235 (236)
T PF15067_consen 200 RVEDIGQLVPLLPNPCSPISETR-----WQTEDYDGNKILL 235 (236)
T ss_pred EecchhhhcccCCCCcccccCCc-----ceeeCCCCCEecc
Confidence 99999998655543333333332 3468999999843
No 103
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.71 E-value=0.0031 Score=39.37 Aligned_cols=96 Identities=22% Similarity=0.197 Sum_probs=59.9
Q ss_pred CCHHHHHHHHhhhcCC-eecc--ccCC----CCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCCH-
Q 032174 34 ENLERSLEFYQNILGL-EINE--ARPH----DKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV- 105 (146)
Q Consensus 34 ~d~~~~~~FY~~~lg~-~~~~--~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d~- 105 (146)
.|.++|.+||.++||- ++.. ..+. ....+-.+.+.+++..+......... ..+. ...|++.++|.
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~~~------~~~~-~~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGPDF------PFGN-NISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEESTS----------T-TEEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCCCC------CCCC-cEEEEEEcCCHH
Confidence 7999999999999984 2222 1111 11233456788888887766654211 1112 36788888865
Q ss_pred --HHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEEE
Q 032174 106 --SKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 142 (146)
Q Consensus 106 --~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~~ 142 (146)
++++++|.+-|- +......++|-.|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~------~~~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ------WFSRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE------TCCEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC------ccceeEEEEeCCCCEEEeC
Confidence 455777877775 3347889999999999875
No 104
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00015 Score=52.11 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=66.9
Q ss_pred ceeeeeeeEEEEeC--CHHHHHHHHhhhcCCeeccccCCCCCC-----ceEEEEEeCCeEEEEEeeCCC--CCCC-C---
Q 032174 21 YGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLP-----YRGAWLWVGAEMIHLMELPNP--DPLS-G--- 87 (146)
Q Consensus 21 ~~~~~l~hv~l~v~--d~~~~~~FY~~~lg~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~--~~~~-~--- 87 (146)
+.+..++|+...++ .++.+.+||.+.|||......++.... ++.+.+...+..+. +....+ +... .
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~-mpinEp~~G~k~ksQIq 252 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIK-MPINEPAPGKKKKSQIQ 252 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEE-EeccCCCCCCccHHHHH
Confidence 66888999999999 788999999999999887755533211 11111111111111 221111 1110 0
Q ss_pred ---CCCCCCCccEEEEEeCCHHHHHHHHHHCCCeEeccC
Q 032174 88 ---RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK 123 (146)
Q Consensus 88 ---~~~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~ 123 (146)
....|.|..|+++.++|+-++.+.++++|+++..+|
T Consensus 253 eyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~P 291 (381)
T KOG0638|consen 253 EYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPP 291 (381)
T ss_pred HHHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCC
Confidence 124567889999999999999999999999987554
No 105
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.93 E-value=0.005 Score=37.68 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=39.4
Q ss_pred cEEEEEeCCHHHHHHHHHH-CCCeEec----cCCCceEEEEECCCC-CeEEEEeec
Q 032174 96 RHTCIAIRDVSKLKMILDK-AGISYTL----SKSGRPAIFTRDPDA-NALEFTQVD 145 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~-~G~~~~~----~~~g~~~~~~~DpdG-~~ie~~~~~ 145 (146)
+|++|.|+|+++..+.+.+ .|+.... +..+.+..++..++| ..|||+++.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~ 56 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPL 56 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeC
Confidence 5999999999999999998 8987543 234567778888888 689999875
No 106
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.01 E-value=0.03 Score=33.89 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=41.0
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeC--
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 103 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~-- 103 (146)
+..+.|.|+| +++++||.++|+-+.. ..+.+....+++-... +...=.+-.+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~-------------------~~l~f~ea~G~DL~~~-~~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP-------------------FFLTFQEAQGPDLTIE-NNETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT-------------------TTEEEEE---CCGSS--TTSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC-------------------ceEEEeeccCCccccC-CCcEEeeEEEEEEecCc
Confidence 4568899999 8899999999862221 2333444433332211 111122356888888
Q ss_pred -CHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeE
Q 032174 104 -DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANAL 139 (146)
Q Consensus 104 -d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~i 139 (146)
|+.++.+++.+.+.- -+...+.+.+.||.|..+
T Consensus 65 ~Dl~~L~~~le~~~~f---idKk~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 65 FDLAALKSHLEEQEFF---IDKKEKFLVTSDPSQIEL 98 (101)
T ss_dssp --HHHHHHHTTTS-EE-----TT-SEEEEE-TTS-EE
T ss_pred ccHHHHHHHhcccceE---ecCCceEEEEECCcceEE
Confidence 777888888773332 223478888999998654
No 107
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=94.94 E-value=0.16 Score=32.15 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=36.3
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-CCeEEEEEe
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 78 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 78 (146)
.++.|+++.|.|++++.+-..+ .|.+............+.+++.- ++..++|++
T Consensus 86 ~g~~hia~~v~d~d~~~~~l~~-~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e 140 (142)
T cd08353 86 LGLRRVMFAVDDIDARVARLRK-HGAELVGEVVQYENSYRLCYIRGPEGILIELAE 140 (142)
T ss_pred CCceEEEEEeCCHHHHHHHHHH-CCCceeCCceecCCCeEEEEEECCCCCEEEeee
Confidence 4688999999999999999977 68887653222222334455554 344666665
No 108
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=94.82 E-value=0.23 Score=32.54 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=35.6
Q ss_pred CccEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEEC-CCCCeEEEEee
Q 032174 94 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRD-PDANALEFTQV 144 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~D-pdG~~ie~~~~ 144 (146)
|+.|+++.|.|+++..+.+.+ .|.++.....+...++..+ ..+..+++.+.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEGDRVRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeCCEEEEEecCCCCCCEEEEEeC
Confidence 368999999999999999976 5988765443332222222 35788888764
No 109
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=94.81 E-value=0.35 Score=29.45 Aligned_cols=51 Identities=18% Similarity=0.070 Sum_probs=36.1
Q ss_pred CccEEEEEeCCHHHHHHHHHH-CCCeEeccC---C-CceEEEEECCCCCeEEEEee
Q 032174 94 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK---S-GRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~---~-g~~~~~~~DpdG~~ie~~~~ 144 (146)
++.|+++.|+|+++..+.+.+ .|..+.... . ..+.+.+..+++..+++...
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 58 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSF 58 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEc
Confidence 468999999999999999975 799876432 1 22334455566777777643
No 110
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=94.21 E-value=0.39 Score=31.56 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=37.6
Q ss_pred CccEEEEEeCCHHHHHHHHHH-CCCeEecc-----C----C--------C-----ceEEEEECCCCCeEEEEeec
Q 032174 94 RDRHTCIAIRDVSKLKMILDK-AGISYTLS-----K----S--------G-----RPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~-----~----~--------g-----~~~~~~~DpdG~~ie~~~~~ 145 (146)
++.|+++.|.|+++..+...+ .|.++... . . + ...+++..++|..||+++.+
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~ 78 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFK 78 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEecc
Confidence 468999999999999999976 69876311 0 0 1 23456666778889999864
No 111
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=94.02 E-value=0.64 Score=29.36 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=43.1
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-CCeEEEEEeeCCCC
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPD 83 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 83 (146)
.++.|+.+.|.|++++.+-.++ .|.++...-.......+.+++.- ++..++|++...+.
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~~~ 127 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKGYK 127 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccCCcEEEEEecCCCC
Confidence 4688999999999999998876 78888763333234455666665 46689998876653
No 112
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=94.02 E-value=0.3 Score=28.38 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHCCCeEec---cCCCceEEEEECCCCCeEEEEee
Q 032174 104 DVSKLKMILDKAGISYTL---SKSGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 104 d~~~~~~~l~~~G~~~~~---~~~g~~~~~~~DpdG~~ie~~~~ 144 (146)
..+++.+.+.++|+.+.. ...+.+.+...|.||+.+|+.=.
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~vD 73 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYVD 73 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEEc
Confidence 789999999999997643 34568999999999999998643
No 113
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=94.02 E-value=0.37 Score=31.64 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=37.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-CCeEEEEEe
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 78 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 78 (146)
.+++||.+.|+|+..+..-+++ .|.+....-.... .-..+|+.- ++.++++..
T Consensus 114 rGfgHIci~V~di~sac~~lke-kGV~f~Kk~~dGk-~K~iaF~~dpDgywiei~~ 167 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKE-KGVRFKKKLKDGK-MKPIAFLHDPDGYWIEIEL 167 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHH-hCceeeecCCCcc-ccceeEEECCCCCeEEEee
Confidence 5899999999999999999987 8999655433222 224455544 344666654
No 114
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=93.81 E-value=0.46 Score=29.34 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=33.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHC----CCeEeccCCCceEEEEECCCCCeEEEEeec
Q 032174 95 DRHTCIAIRDVSKLKMILDKA----GISYTLSKSGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~~----G~~~~~~~~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
+.|+.+.|+|+++..+.+.+. |.+......+ ...|+...++..+++.+.+
T Consensus 2 i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-~~~~~~~~~~~~i~l~~~~ 55 (128)
T cd07242 2 IHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-GRSWRAGDGGTYLVLQQAD 55 (128)
T ss_pred CceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-CceEEecCCceEEEEEecc
Confidence 589999999999999888775 9887654322 2233332455667776543
No 115
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=93.66 E-value=0.7 Score=28.15 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=35.8
Q ss_pred ccEEEEEeCCHHHHHHHHHH-CCCeEeccC---C--CceEEEEECC---CCCeEEEEee
Q 032174 95 DRHTCIAIRDVSKLKMILDK-AGISYTLSK---S--GRPAIFTRDP---DANALEFTQV 144 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~---~--g~~~~~~~Dp---dG~~ie~~~~ 144 (146)
+.|+++.|+|+++..+.+.+ .|++..... . +....++.+. .|..+++++.
T Consensus 2 i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 60 (126)
T cd08346 2 LHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEW 60 (126)
T ss_pred cccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEec
Confidence 57999999999999999986 698875432 1 1334555554 5677888764
No 116
>PLN02367 lactoylglutathione lyase
Probab=93.64 E-value=0.56 Score=32.99 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=39.7
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-CCeEEEEEeeCC
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPN 81 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 81 (146)
.+++|+++.|.|++++.+-.++ .|.++... +........+|+.- +|..++|++...
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~-P~~g~~~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKK-PNDGKMKGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeC-CccCCceEEEEEECCCCCEEEEEeccc
Confidence 4799999999999999999966 99988752 22222223455644 466888887543
No 117
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=93.18 E-value=0.59 Score=28.62 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=30.1
Q ss_pred cEEEEEeCCHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEE
Q 032174 96 RHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 141 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~ 141 (146)
.|+++.|+|+++..+.....|.++.....+...+.+..++|..+.+
T Consensus 2 ~~i~l~V~D~~~a~~FY~~LGf~~~~~~~~~~~~~~~~~~~~~l~l 47 (122)
T cd07235 2 DAVGIVVADMAKSLDFYRRLGFDFPEEADDEPHVEAVLPGGVRLAW 47 (122)
T ss_pred ceEEEEeccHHHHHHHHHHhCceecCCcCCCCcEEEEeCCCEEEEE
Confidence 6899999999999999988898765432222233344444444433
No 118
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=93.18 E-value=0.55 Score=27.46 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=36.0
Q ss_pred EEEEEeCCHHHHHHHHHH-CCCeEeccCC--CceEEEEECCCCCeEEEEeec
Q 032174 97 HTCIAIRDVSKLKMILDK-AGISYTLSKS--GRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 97 hl~~~v~d~~~~~~~l~~-~G~~~~~~~~--g~~~~~~~DpdG~~ie~~~~~ 145 (146)
|+.+.+.|+++..+.+.+ .|.+...... .....++.++ +..+++.+.+
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~ 51 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLG-GTRLELFEGD 51 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecC-CceEEEecCC
Confidence 789999999999999997 8998766543 2455555554 7788887654
No 119
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=93.00 E-value=1 Score=28.06 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=34.9
Q ss_pred ccEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEECC--CCCeEEEEee
Q 032174 95 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP--DANALEFTQV 144 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~Dp--dG~~ie~~~~ 144 (146)
+.|+.+.|.|+++..+.+.+ .|.++.....+....++..+ .+..+.+.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 54 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPLGGLVFLSRDPDEHHQIALITG 54 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccCCcEEEEEecCCCceEEEEEec
Confidence 57999999999999999987 79987654432244454433 3456776654
No 120
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=92.93 E-value=0.82 Score=27.97 Aligned_cols=30 Identities=13% Similarity=0.398 Sum_probs=25.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccc
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEA 54 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~ 54 (146)
.++.|+.+.|.|++++.+...+ .|.++...
T Consensus 71 ~g~~h~~f~v~d~~~~~~~l~~-~G~~~~~~ 100 (128)
T cd07249 71 EGLHHIAFEVDDIDAALARLKA-QGVRLLQE 100 (128)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-CCCeeecc
Confidence 5688999999999999998877 68887664
No 121
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=92.45 E-value=0.81 Score=27.07 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=33.6
Q ss_pred ccEEEEEeCCHHHHHHHHH-HCCCeEeccCC-CceEEEEECCCCCeEEEEee
Q 032174 95 DRHTCIAIRDVSKLKMILD-KAGISYTLSKS-GRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~-~~G~~~~~~~~-g~~~~~~~DpdG~~ie~~~~ 144 (146)
+.|+++.|+|+++..+.+. ..|........ .....++..+++..+++...
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 52 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLFPGAWLYAGDGPQLHLIEE 52 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCCCceEEEeCCCcEEEEEec
Confidence 3699999999999999886 56887654322 12334555455556777654
No 122
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=92.44 E-value=1.4 Score=26.83 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=34.0
Q ss_pred ccEEEEEeCCHHHHHHHHHH-CCCeEecc----CCCceEEEEECCCCCeEEEEee
Q 032174 95 DRHTCIAIRDVSKLKMILDK-AGISYTLS----KSGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~----~~g~~~~~~~DpdG~~ie~~~~ 144 (146)
+.|+++.|+|+++..+.+.+ .|.+.... ..+....++.-.+|..+++++.
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 56 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTR 56 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcC
Confidence 47999999999999998877 58876421 1232333444346777888753
No 123
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=92.37 E-value=0.23 Score=33.06 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=27.2
Q ss_pred cEEEEEeCCHHHHHHHH-HHCCCeEeccC----CCceEEEEECCCCCeEEEEeecC
Q 032174 96 RHTCIAIRDVSKLKMIL-DKAGISYTLSK----SGRPAIFTRDPDANALEFTQVDG 146 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l-~~~G~~~~~~~----~g~~~~~~~DpdG~~ie~~~~~~ 146 (146)
.|+.+.|+|+++..+++ .+.|..+.... .|.....+.=++| .||++..++
T Consensus 2 DH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~-YlEli~i~~ 56 (175)
T PF13468_consen 2 DHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDG-YLELIAIDP 56 (175)
T ss_dssp EEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSS-EEEEEEES-
T ss_pred CEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCc-eEEEEEeCC
Confidence 69999999999999999 88899986432 2333333333667 999998653
No 124
>PRK11478 putative lyase; Provisional
Probab=92.06 E-value=1.8 Score=26.63 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=33.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-CCeEEEEEe
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 78 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 78 (146)
.++.|+.+.|.|++++.+-..+ .|.++.........+...+|+.- .+..+++++
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLES-HNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHH-cCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 4688999999999999998866 79887542211212223444433 344555543
No 125
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=91.81 E-value=2.2 Score=28.89 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=41.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeecccc-CCCCCCceEE----EEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEE
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEAR-PHDKLPYRGA----WLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 98 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~-~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl 98 (146)
-.++||+++|++.+.+.+|-...+..-..-.. --.+..+... -+..++-.+.++..+-+... ..|. .|+-|+
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~K-~Yp~--eGWEHI 109 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKDK-RYPQ--EGWEHI 109 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---SS---SS---EEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCCC-CCCC--CCceEE
Confidence 35899999999999999999998866433221 1111111111 12336667777776655431 1222 457899
Q ss_pred EEEeC
Q 032174 99 CIAIR 103 (146)
Q Consensus 99 ~~~v~ 103 (146)
-|.++
T Consensus 110 E~Vip 114 (185)
T PF06185_consen 110 EFVIP 114 (185)
T ss_dssp EEE--
T ss_pred EEEec
Confidence 99998
No 126
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=91.57 E-value=1.8 Score=26.49 Aligned_cols=47 Identities=11% Similarity=0.062 Sum_probs=31.4
Q ss_pred ccEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEECC-CCCeEEEE
Q 032174 95 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP-DANALEFT 142 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~Dp-dG~~ie~~ 142 (146)
+.|+++.|.|+++..+.+.+ .|.+......+ ..+++..+ .+..+.+.
T Consensus 3 l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-~~~~~~~~~~~~~~~l~ 51 (120)
T cd07252 3 LGYLGVESSDLDAWRRFATDVLGLQVGDRPED-GALYLRMDDRAWRIAVH 51 (120)
T ss_pred ccEEEEEeCCHHHHHHHHHhccCceeccCCCC-CeEEEEccCCceEEEEE
Confidence 57999999999999999976 69987654222 23344433 34445443
No 127
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=91.52 E-value=1.3 Score=26.85 Aligned_cols=49 Identities=24% Similarity=0.324 Sum_probs=34.2
Q ss_pred cEEEEEeCCHHHHHHHHHHC-CCeEeccC--C--CceEEEEECCC---CCeEEEEee
Q 032174 96 RHTCIAIRDVSKLKMILDKA-GISYTLSK--S--GRPAIFTRDPD---ANALEFTQV 144 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~~-G~~~~~~~--~--g~~~~~~~Dpd---G~~ie~~~~ 144 (146)
.|+++.|.|+++..+.+.+. |.+..... . +...+++..++ +..+++.+.
T Consensus 2 ~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 58 (121)
T cd07233 2 LHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYN 58 (121)
T ss_pred eeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEec
Confidence 69999999999999999874 99875432 2 22334555444 567887653
No 128
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=91.36 E-value=1.4 Score=26.41 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=32.9
Q ss_pred EEEEEeCCHHHHHHHHHH-CCCeEeccC---CCceEEEEECCCC--CeEEEE
Q 032174 97 HTCIAIRDVSKLKMILDK-AGISYTLSK---SGRPAIFTRDPDA--NALEFT 142 (146)
Q Consensus 97 hl~~~v~d~~~~~~~l~~-~G~~~~~~~---~g~~~~~~~DpdG--~~ie~~ 142 (146)
|+++.|.|+++..+.+.+ .|+++.... .+...+.+.++++ ..+.+.
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 52 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLA 52 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEe
Confidence 789999999999999987 799986532 2344555666654 345554
No 129
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=91.34 E-value=1.8 Score=26.43 Aligned_cols=47 Identities=6% Similarity=0.063 Sum_probs=32.9
Q ss_pred ccEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEECCC-CCeEEEEe
Q 032174 95 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD-ANALEFTQ 143 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~Dpd-G~~ie~~~ 143 (146)
+.|+.+.|+|+++..+.+.+ .|..+..... ..+++...+ +..+.+.+
T Consensus 3 i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--~~~~l~~~~~~~~l~l~~ 51 (125)
T cd07255 3 IGAVTLRVADLERSLAFYQDVLGLEVLERTD--STAVLGTGGKRPLLVLEE 51 (125)
T ss_pred EEEEEEEECCHHHHHHHHHhccCcEEEEcCC--CEEEEecCCCeEEEEEEe
Confidence 57999999999999999986 6998876532 234444433 45555544
No 130
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=91.28 E-value=1.7 Score=29.43 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=38.0
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-CCeEEEEEeeCC
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPN 81 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 81 (146)
.+++|+++.|.|++++.+.+.+ .|+++... +......+.+|+.- .+..++|+....
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~-p~~~~~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEK-LGVEFVKK-PDDGKMKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHH-CCCeEEeC-CccCCceeEEEEECCCCCEEEEEECCC
Confidence 3799999999999999999877 89887642 22111223344433 456888877544
No 131
>PRK10291 glyoxalase I; Provisional
Probab=91.01 E-value=2.5 Score=26.20 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=37.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeecccc-CCCCCCceEEEEEe-CCeEEEEEeeCC
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEAR-PHDKLPYRGAWLWV-GAEMIHLMELPN 81 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~~~~ 81 (146)
.+++|+.+.|.|++++.+-.++ .|.++.... +........+|+.- ++..++|+....
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 3688999999999999888866 888776421 21111122344443 466888888653
No 132
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=90.32 E-value=2.2 Score=25.99 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=31.6
Q ss_pred cEEEEEeCCHHHHHHHHHH----CCCeEeccCCCceEEEEECC-CCCeEEEEee
Q 032174 96 RHTCIAIRDVSKLKMILDK----AGISYTLSKSGRPAIFTRDP-DANALEFTQV 144 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~----~G~~~~~~~~g~~~~~~~Dp-dG~~ie~~~~ 144 (146)
.|+.+.|.|+++..+...+ .|.+......+.+ +.+..+ .+..+.+...
T Consensus 2 ~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 54 (123)
T cd07262 2 DHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGPGA-VGYGKGGGGPDFWVTKP 54 (123)
T ss_pred cEEEEecCcHHHHHHHHHHHHhhcCceEEeecCCce-eEeccCCCCceEEEecc
Confidence 6999999999999888877 5888764432233 333443 3455666543
No 133
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.14 E-value=3.6 Score=26.67 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=57.0
Q ss_pred eCCHHHHHHHHhhhcCC-eec--cccCCC-----CCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeC-
Q 032174 33 CENLERSLEFYQNILGL-EIN--EARPHD-----KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 103 (146)
Q Consensus 33 v~d~~~~~~FY~~~lg~-~~~--~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~- 103 (146)
-.+.+++.+||.++|.= ++. .+.+.+ ...+-.+.+++++..+..+...... ....... ..+-+.++
T Consensus 13 ~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~----~f~fneA-~S~~v~~~~ 87 (151)
T COG3865 13 DGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNT----SFKFNEA-FSFQVACDD 87 (151)
T ss_pred CCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCc----CCCcCcc-EEEEEEcCC
Confidence 38999999999999843 222 222211 2233456677777654433322211 1112222 33445555
Q ss_pred --CHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEEE
Q 032174 104 --DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 142 (146)
Q Consensus 104 --d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~~ 142 (146)
.+|.+...|.+.|. .-....+++|-.|..|.+.
T Consensus 88 q~E~Drlwnal~~~g~------e~~~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 88 QEEIDRLWNALSDNGG------EAEACGWLKDKFGVSWQIV 122 (151)
T ss_pred HHHHHHHHHHHhccCc------chhcceeEecccCcEEEEc
Confidence 46667788888875 2345578889888888775
No 134
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=90.10 E-value=1.9 Score=26.04 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=24.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHCCCeEecc
Q 032174 94 RDRHTCIAIRDVSKLKMILDKAGISYTLS 122 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~~G~~~~~~ 122 (146)
++.|++|.|+|+++..+.+...|..+...
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVREE 30 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEee
Confidence 36899999999999999998889887543
No 135
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=89.64 E-value=2.4 Score=25.57 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=25.3
Q ss_pred CccEEEEEeCCHHHHHHHHHH-CCCeEeccC
Q 032174 94 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK 123 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~ 123 (146)
++.|+.+.|+|+++..+.+.+ .|.......
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeeccc
Confidence 468999999999999999987 798876543
No 136
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=89.57 E-value=1.8 Score=29.35 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=37.8
Q ss_pred CccEEEEEeC--CHHHHHHHHHH-CCCeEeccC------CCceEEEEECCCC-CeEEEEeec
Q 032174 94 RDRHTCIAIR--DVSKLKMILDK-AGISYTLSK------SGRPAIFTRDPDA-NALEFTQVD 145 (146)
Q Consensus 94 ~~~hl~~~v~--d~~~~~~~l~~-~G~~~~~~~------~g~~~~~~~DpdG-~~ie~~~~~ 145 (146)
.+.|+++.|+ |++++.++..+ .|.+..... .+.++..+..|+| ..+++.++.
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~ 64 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPA 64 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCC
Confidence 3689999999 99999999865 798764321 2455677788765 457777643
No 137
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=88.47 E-value=3.4 Score=24.76 Aligned_cols=38 Identities=8% Similarity=0.130 Sum_probs=28.9
Q ss_pred ccEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEECC
Q 032174 95 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP 134 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~Dp 134 (146)
+.|+.|.|.|+++..+.+.+ .|.++..... ..+++..+
T Consensus 3 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~--~~~~~~~~ 41 (117)
T cd07240 3 IAYAELEVPDLERALEFYTDVLGLTVLDRDA--GSVYLRCS 41 (117)
T ss_pred eeEEEEecCCHHHHHHHHHhccCcEEEeecC--CeEEEecC
Confidence 57999999999999999988 7998876542 23444444
No 138
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=88.09 E-value=2.4 Score=25.62 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.8
Q ss_pred ccEEEEEeCCHHHHHHHHHH-CCCeEec
Q 032174 95 DRHTCIAIRDVSKLKMILDK-AGISYTL 121 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~ 121 (146)
+.|+++.|.|+++..+.+.+ .|.++..
T Consensus 2 l~Hi~i~v~d~~~~~~FY~~~lG~~~~~ 29 (128)
T PF00903_consen 2 LDHIAIRVKDLEKAIDFYTDVLGFRLVE 29 (128)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTSEEEE
T ss_pred eEEEEEEcCCHHHHHHHHHHHhCCcEEe
Confidence 58999999999999999987 6998754
No 139
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=87.99 E-value=3.8 Score=24.99 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=33.2
Q ss_pred ccEEEEEeCCHHHHHHHHHH-CCCeEeccC---CCceEEEEECCCCCeEEEEee
Q 032174 95 DRHTCIAIRDVSKLKMILDK-AGISYTLSK---SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~---~g~~~~~~~DpdG~~ie~~~~ 144 (146)
+.|+++.|+|+++..+.+.+ .|.++.... ......++..+.+..+++.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 55 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEP 55 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEec
Confidence 57999999999999999974 698875321 112233333344567777653
No 140
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=87.59 E-value=5.1 Score=25.06 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=32.4
Q ss_pred CccEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEECC---CCCeEEEEe
Q 032174 94 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP---DANALEFTQ 143 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~Dp---dG~~ie~~~ 143 (146)
.+.|++|.|+|+++..+.+.+ .|.++...... ...++... ..+.+.+..
T Consensus 3 ~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-~~~~~~~~~~~~~~~i~l~~ 55 (134)
T cd08360 3 RLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-RGAFLRAAGGGDHHNLFLIK 55 (134)
T ss_pred eeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-cEEEEECCCCCCCcEEEEec
Confidence 368999999999999999976 69987643222 23344433 234666543
No 141
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=87.50 E-value=6 Score=25.80 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=45.4
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccc-cCCCCCCceEEEEEe------CCeEEEEEeeCCCCCCCCCCCCCCCccEE
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEA-RPHDKLPYRGAWLWV------GAEMIHLMELPNPDPLSGRPEHGGRDRHT 98 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~-~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~hl 98 (146)
++||.++|.+.+.+.+|-...+-+--.-. ..-.+ ...+-+.+ ++-.+..+..+-+... ..|. .|+-|+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~ING--RPI~l~~L~qPl~~~~~~I~cvELP~P~~k-~Yp~--eGWEHI 76 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEING--RPIALIKLEKPLQFAGWSISIVELPFPKDK-KYPQ--EGWEHI 76 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCC--eeEEEEEcCCCceeCCcEEEEEEeCCCCCC-CCCC--CCceEE
Confidence 68999999999999999988775533321 11111 12222332 5557777776655331 1222 457899
Q ss_pred EEEeC
Q 032174 99 CIAIR 103 (146)
Q Consensus 99 ~~~v~ 103 (146)
-+.++
T Consensus 77 E~Vlp 81 (149)
T cd07268 77 EIVIP 81 (149)
T ss_pred EEEec
Confidence 99998
No 142
>PRK11700 hypothetical protein; Provisional
Probab=87.03 E-value=7.5 Score=26.40 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=46.7
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccc-cCCCCCCceEEEEEe------CCeEEEEEeeCCCCCCCCCCCCCCCcc
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEA-RPHDKLPYRGAWLWV------GAEMIHLMELPNPDPLSGRPEHGGRDR 96 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~-~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~ 96 (146)
-.++||.++|++.+.+.+|-...+-+--.-. ..-++ ...+-+.+ ++-.+..+..+-+... ..|. .|+-
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~ING--RPI~l~~L~qPl~~~~w~I~cvELP~P~~k-~Yp~--eGWE 112 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIING--RPICLFELDQPLQVGHWSIDCVELPYPGEK-RYPH--EGWE 112 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCC--eeEEEEEcCCCceeCCcEEEEEEeCCCCCC-CCCC--CCce
Confidence 4589999999999999999988775533321 11111 12222333 4557777776655431 1222 4578
Q ss_pred EEEEEeC
Q 032174 97 HTCIAIR 103 (146)
Q Consensus 97 hl~~~v~ 103 (146)
|+-+.++
T Consensus 113 HIElVlp 119 (187)
T PRK11700 113 HIELVLP 119 (187)
T ss_pred EEEEEec
Confidence 9999998
No 143
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=86.35 E-value=5.5 Score=24.23 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=25.2
Q ss_pred CccEEEEEeCCHHHHHHHHHH-CCCeEeccC
Q 032174 94 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK 123 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~ 123 (146)
++.|++|.|+|+++..+.+.+ .|.++....
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHHhccCCEeeeec
Confidence 368999999999999999976 799876543
No 144
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=86.30 E-value=4.8 Score=24.63 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=22.2
Q ss_pred cEEEEEeCCHHHHHHHHHHCCCeEec
Q 032174 96 RHTCIAIRDVSKLKMILDKAGISYTL 121 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~~G~~~~~ 121 (146)
.++.|.|+|+++..+.....|.+...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNP 27 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEcc
Confidence 46889999999999999888988653
No 145
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=85.99 E-value=7.2 Score=25.20 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=34.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHH-CCCeEeccC-------CCceEEEEE-CCCCCeEEEEe
Q 032174 93 GRDRHTCIAIRDVSKLKMILDK-AGISYTLSK-------SGRPAIFTR-DPDANALEFTQ 143 (146)
Q Consensus 93 ~~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~-------~g~~~~~~~-DpdG~~ie~~~ 143 (146)
.++.|++|.|+|+++..+.+.+ .|.++.... .+....++. ++.++.+.+.+
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 67 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAE 67 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEc
Confidence 4579999999999999999976 798864321 122344433 44556666644
No 146
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=85.82 E-value=5.9 Score=24.75 Aligned_cols=28 Identities=7% Similarity=0.010 Sum_probs=23.4
Q ss_pred ccEEEEEeCCHHHHHHHHHH-CCCeEecc
Q 032174 95 DRHTCIAIRDVSKLKMILDK-AGISYTLS 122 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~ 122 (146)
+.|+++.|+|+++..+.+.+ .|.++...
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~ 29 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVL 29 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEecc
Confidence 37999999999999999986 59887543
No 147
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=85.41 E-value=5.5 Score=25.49 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=37.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccC-CCCCCceEEEEEe-CCeEEEEEeeCC
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARP-HDKLPYRGAWLWV-GAEMIHLMELPN 81 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~~~~~ 81 (146)
.++.|+.+.|.|++++.+...+ .|.++..... ........+|+.- .+..++|+....
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 3688999999999999999977 8887654221 1222223344443 566888877553
No 148
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=84.56 E-value=7.2 Score=24.95 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=23.1
Q ss_pred CccEEEEEeCCHHHHHHHHHH-CCCeEe
Q 032174 94 RDRHTCIAIRDVSKLKMILDK-AGISYT 120 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~ 120 (146)
.+.|+.+.|+|+++..+.+.+ .|.++.
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~ 31 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVS 31 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEE
Confidence 468999999999999999965 698865
No 149
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=84.34 E-value=6.7 Score=23.41 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=23.5
Q ss_pred cEEEEEeCCHHHHHHHHHH-CCCeEeccC
Q 032174 96 RHTCIAIRDVSKLKMILDK-AGISYTLSK 123 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~-~G~~~~~~~ 123 (146)
.|++|.|.|+++..+...+ .|.++....
T Consensus 2 ~hi~l~v~d~~~s~~FY~~~lG~~~~~~~ 30 (114)
T cd07247 2 VWFELPTTDPERAKAFYGAVFGWTFEDMG 30 (114)
T ss_pred EEEEeeCCCHHHHHHHHHhccCceeeecc
Confidence 6999999999999999986 498876543
No 150
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=82.12 E-value=5.8 Score=23.34 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=25.0
Q ss_pred eeeeeeEEEEeCCHHHHHHHHhhhcCCeecc
Q 032174 23 VVSVHHVGILCENLERSLEFYQNILGLEINE 53 (146)
Q Consensus 23 ~~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~ 53 (146)
-.+..|+.+.|.|++++.+...+ +|.++..
T Consensus 54 ~~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~ 83 (108)
T PF12681_consen 54 PGGGFHLCFEVEDVDALYERLKE-LGAEIVT 83 (108)
T ss_dssp SSSEEEEEEEESHHHHHHHHHHH-TTSEEEE
T ss_pred CCceeEEEEEEcCHHHHHHHHHH-CCCeEee
Confidence 34677899999999999999977 7988754
No 151
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=81.99 E-value=8.9 Score=23.15 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=25.2
Q ss_pred CccEEEEEeCCHHHHHHHHHH-CCCeEeccC
Q 032174 94 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK 123 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~ 123 (146)
.+.|+.+.|+|+++..+.+.+ .|.++....
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~ 34 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEED 34 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeccC
Confidence 368999999999999999987 799876543
No 152
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=81.07 E-value=10 Score=23.29 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=30.9
Q ss_pred ccEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEE-CCCCCeEEEE
Q 032174 95 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTR-DPDANALEFT 142 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~-DpdG~~ie~~ 142 (146)
+.|+++.|.|+++..+.+.+ .|.+......+ ..++. +.+++.+.+.
T Consensus 7 l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~~--~~~l~~~~~~~~i~l~ 54 (124)
T cd08361 7 IAYVRLGTRDLAGATRFATDILGLQVAERTAK--ATYFRSDARDHTLVYI 54 (124)
T ss_pred eeEEEEeeCCHHHHHHHHHhccCceeccCCCC--eEEEEcCCccEEEEEE
Confidence 57999999999999999977 59887544322 33333 3344555443
No 153
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=79.11 E-value=11 Score=22.56 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.2
Q ss_pred eEEEEeCCHHHHHHHHhhhcCCeecc
Q 032174 28 HVGILCENLERSLEFYQNILGLEINE 53 (146)
Q Consensus 28 hv~l~v~d~~~~~~FY~~~lg~~~~~ 53 (146)
|+.+.|.|+++..+...+ .|.++..
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~ 93 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVL 93 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeee
Confidence 799999999999999977 6877654
No 154
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=78.97 E-value=11 Score=22.54 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=24.1
Q ss_pred CccEEEEEeCCHHHHHHHHHH-CCCeEecc
Q 032174 94 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 122 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~ 122 (146)
++.|+.|.|.|+++..+.+.+ .|.+....
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEe
Confidence 468999999999999999886 68886543
No 155
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=78.36 E-value=12 Score=24.52 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=34.1
Q ss_pred ccEEEEEeCCH---HHHHHHHHHCCCeEeccCCCceEEEEECC------CCCeEEEEee
Q 032174 95 DRHTCIAIRDV---SKLKMILDKAGISYTLSKSGRPAIFTRDP------DANALEFTQV 144 (146)
Q Consensus 95 ~~hl~~~v~d~---~~~~~~l~~~G~~~~~~~~g~~~~~~~Dp------dG~~ie~~~~ 144 (146)
..|+|++|.+. +.+.+.+.+.|-.++...-+++-+++.+- .|..|+++|-
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvEL 60 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVEL 60 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEe
Confidence 37999999854 55677778888877766555555555543 2667777664
No 156
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=77.76 E-value=13 Score=22.62 Aligned_cols=47 Identities=19% Similarity=0.291 Sum_probs=31.3
Q ss_pred ccEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEECCCCCeEEEEe
Q 032174 95 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~DpdG~~ie~~~ 143 (146)
..|+++.|.|+++..+...+ .|++...... ...++....|..+++.+
T Consensus 5 ~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~l~~~~ 52 (123)
T cd08351 5 LNHTIVPARDREASAEFYAEILGLPWAKPFG--PFAVVKLDNGVSLDFAQ 52 (123)
T ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEeeeccC--CEEEEEcCCCcEEEEec
Confidence 58999999999999999975 5988765321 12333333455555544
No 157
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=77.49 E-value=14 Score=22.81 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=30.8
Q ss_pred cEEEEEeCCHHHHHHHHHH-CCCeEeccCC--C-ceEEEEECCC-CCeEEEEe
Q 032174 96 RHTCIAIRDVSKLKMILDK-AGISYTLSKS--G-RPAIFTRDPD-ANALEFTQ 143 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~--g-~~~~~~~Dpd-G~~ie~~~ 143 (146)
.|++|.|.|+++..+.+.+ .|.++..... + ....++...+ +..+++..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 53 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFP 53 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEc
Confidence 4899999999999999976 7988754321 1 2334444333 34555544
No 158
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=76.87 E-value=16 Score=22.98 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=22.4
Q ss_pred eeeeeEEEEeC--CHHHHHHHHhhhcCCeecc
Q 032174 24 VSVHHVGILCE--NLERSLEFYQNILGLEINE 53 (146)
Q Consensus 24 ~~l~hv~l~v~--d~~~~~~FY~~~lg~~~~~ 53 (146)
.+++|+++.+. |+++..+...+ .|.++..
T Consensus 62 ~~~~hiaf~v~~~dv~~~~~~l~~-~G~~i~~ 92 (139)
T PRK04101 62 QSYTHIAFSIEEEDFDHWYQRLKE-NDVNILP 92 (139)
T ss_pred CCeeEEEEEecHHHHHHHHHHHHH-CCceEcC
Confidence 35789999887 88888888766 6887654
No 159
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=75.93 E-value=15 Score=22.25 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=24.7
Q ss_pred CccEEEEEeCCHHHHHHHHHH-CCCeEecc
Q 032174 94 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 122 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~ 122 (146)
++.|+.|.|+|+++..+.+.+ .|.++...
T Consensus 6 ~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 6 HLAHVELLTPKPEESLWFFTDVLGLEETGR 35 (121)
T ss_pred EeeEEEEEeCCHHHHHHHHHhCcCCEEEee
Confidence 468999999999999999987 49887654
No 160
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=75.53 E-value=14 Score=21.88 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=22.7
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccc
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEA 54 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~ 54 (146)
..|+.+.|.|++++.+-+.+ .|.++...
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~-~G~~~~~~ 85 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVA-AGFAIVYG 85 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHh-cCCeEecC
Confidence 45899999999999888866 78887653
No 161
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=74.67 E-value=16 Score=21.93 Aligned_cols=54 Identities=6% Similarity=-0.162 Sum_probs=32.7
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-CCeEEEEEee
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMEL 79 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 79 (146)
.++.|+++.|.|.++..+.. +.+|........ .......+++.- .+..++|...
T Consensus 56 ~~~~~~af~v~~~~~~~~~~-~~~g~~~~~~~~-~~~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 56 ARFVGAAFEAASRADLEKAA-ALPGASVIDDLE-APGGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CcccEEEEEECCHHHHHHHH-HcCCCeeecCCC-CCCCceEEEEECCCCCEEEEEec
Confidence 46889999999999888885 457886654211 111112344433 3456666553
No 162
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=74.44 E-value=20 Score=23.05 Aligned_cols=57 Identities=9% Similarity=-0.087 Sum_probs=33.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhh--cCCeeccccCCCC-CCceEEEEEe-CCeEEEEEeeC
Q 032174 24 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDK-LPYRGAWLWV-GAEMIHLMELP 80 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~--lg~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~~~~ 80 (146)
.+++|+++.|.|++++.+.+..+ .|+++........ .....+|+.- .+..++|....
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 57999999999999998555442 5776653211111 1112234433 45577777543
No 163
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.22 E-value=12 Score=20.41 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=21.4
Q ss_pred cEEEEEeC--CHHHHHHHHHHCCCeEecc
Q 032174 96 RHTCIAIR--DVSKLKMILDKAGISYTLS 122 (146)
Q Consensus 96 ~hl~~~v~--d~~~~~~~l~~~G~~~~~~ 122 (146)
..+.|.++ +.+.+.+.|+++|+++.++
T Consensus 43 ~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 43 KILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred EEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 44666665 8889999999999998765
No 164
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.13 E-value=9.8 Score=20.18 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHCCCeE
Q 032174 95 DRHTCIAIRDVSKLKMILDKAGISY 119 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~~G~~~ 119 (146)
...+.|.+++.+.+.+.|+++|+.+
T Consensus 40 ~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 40 KALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred eEEEEEEeCCHHHHHHHHHHCCceE
Confidence 3668899999999999999999865
No 165
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=73.50 E-value=20 Score=22.62 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.1
Q ss_pred ccEEEEEeCCHHHHHHHHHH-CCCeEec
Q 032174 95 DRHTCIAIRDVSKLKMILDK-AGISYTL 121 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~ 121 (146)
..|+++.|.|+++..+...+ .|.+...
T Consensus 3 ~~Hv~irV~DlerSi~FY~~vLG~~~~~ 30 (127)
T cd08358 3 ALHFVFKVGNRNKTIKFYREVLGMKVLR 30 (127)
T ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEe
Confidence 57999999999999999964 7998643
No 166
>PRK11700 hypothetical protein; Provisional
Probab=73.28 E-value=17 Score=24.70 Aligned_cols=50 Identities=6% Similarity=0.052 Sum_probs=34.8
Q ss_pred ccEEEEEeCC---HHHHHHHHHHCCCeEeccCCCceEEEEECC------CCCeEEEEee
Q 032174 95 DRHTCIAIRD---VSKLKMILDKAGISYTLSKSGRPAIFTRDP------DANALEFTQV 144 (146)
Q Consensus 95 ~~hl~~~v~d---~~~~~~~l~~~G~~~~~~~~g~~~~~~~Dp------dG~~ie~~~~ 144 (146)
..|+|++|-+ .+++.+.+.+.|-.++...-+++-+++.+- .|..|+++|-
T Consensus 40 ~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvEL 98 (187)
T PRK11700 40 ADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVEL 98 (187)
T ss_pred CcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEe
Confidence 4899999985 456677788888887766555555555543 2677777764
No 167
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=73.20 E-value=17 Score=21.53 Aligned_cols=54 Identities=17% Similarity=0.340 Sum_probs=29.5
Q ss_pred eeeeeEEEEeC--CHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe-CCeEEEEEe
Q 032174 24 VSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 78 (146)
Q Consensus 24 ~~l~hv~l~v~--d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 78 (146)
.+++|+++.|. |+++..+-..+ .|.++..............++.- ++..++++.
T Consensus 54 ~~~~hiaf~v~~~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 54 RTYTHIAFQIQSEEFDEYTERLKA-LGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred CCccEEEEEcCHHHHHHHHHHHHH-cCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence 45789999985 56666666655 57776542221111123344433 445666653
No 168
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=72.94 E-value=17 Score=21.63 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=29.0
Q ss_pred EEEEeCCHHHHHHHHHHC-CCeEeccCCCceEEEEECCCCCeEEEEe
Q 032174 98 TCIAIRDVSKLKMILDKA-GISYTLSKSGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 98 l~~~v~d~~~~~~~l~~~-G~~~~~~~~g~~~~~~~DpdG~~ie~~~ 143 (146)
+.|.|+|+++..+.+.+. |+++..... ....++.. +|..+++.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~-~~~~~~~~-~~~~~~l~~ 46 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN-DGVAFFQL-GGLVLALFP 46 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC-CceEEEEc-CCeEEEEec
Confidence 678999999999998866 988765421 22233333 555666654
No 169
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=72.66 E-value=0.95 Score=23.04 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=20.0
Q ss_pred eeeeeeEEEEeCCHHHHHHHHhhhcC
Q 032174 23 VVSVHHVGILCENLERSLEFYQNILG 48 (146)
Q Consensus 23 ~~~l~hv~l~v~d~~~~~~FY~~~lg 48 (146)
+...+-.++.+++.++...||...|-
T Consensus 9 igp~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 9 IGPVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred cCccccCCCccccccchhHHHHHHHH
Confidence 33455567777999999999999764
No 170
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=72.49 E-value=20 Score=22.22 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=18.8
Q ss_pred eeeeeEEEEeC--CHHHHHHHHhhhcCCeecc
Q 032174 24 VSVHHVGILCE--NLERSLEFYQNILGLEINE 53 (146)
Q Consensus 24 ~~l~hv~l~v~--d~~~~~~FY~~~lg~~~~~ 53 (146)
.+++|+++.|. |+++..+-..+ .|+++..
T Consensus 65 ~~~~Hiaf~v~~~~ld~~~~~l~~-~gv~~~~ 95 (131)
T cd08364 65 RTYNHIAFKISDSDVDEYTERIKA-LGVEMKP 95 (131)
T ss_pred CCceEEEEEcCHHHHHHHHHHHHH-CCCEEec
Confidence 36899999998 45555554444 5776543
No 171
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.76 E-value=11 Score=21.42 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=25.9
Q ss_pred HHHHHHHHHHCCCeEeccC------CCceEEEEECCCCCeE
Q 032174 105 VSKLKMILDKAGISYTLSK------SGRPAIFTRDPDANAL 139 (146)
Q Consensus 105 ~~~~~~~l~~~G~~~~~~~------~g~~~~~~~DpdG~~i 139 (146)
+-.+..-|.+.|+.+.... .-...||+.|.+|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 4566778889999885422 2357799999999876
No 172
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=71.32 E-value=20 Score=21.71 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=23.8
Q ss_pred ccEEEEEeCCHHHHHHHHHH-CCCeEecc
Q 032174 95 DRHTCIAIRDVSKLKMILDK-AGISYTLS 122 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~ 122 (146)
+.|+.+.|.|+++..+.+.+ .|.+....
T Consensus 2 i~hv~l~v~d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 2 INHITLAVSDLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred cceEEEEECCHHHHHHHHHHhcCCEEEEe
Confidence 58999999999999999976 69887543
No 173
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=67.88 E-value=29 Score=22.10 Aligned_cols=58 Identities=7% Similarity=-0.042 Sum_probs=33.5
Q ss_pred eeeeeeEEEEeCCHHHHHHHHhhh--cCCeeccccCC-CCCCceEEEEEe-CCeEEEEEeeC
Q 032174 23 VVSVHHVGILCENLERSLEFYQNI--LGLEINEARPH-DKLPYRGAWLWV-GAEMIHLMELP 80 (146)
Q Consensus 23 ~~~l~hv~l~v~d~~~~~~FY~~~--lg~~~~~~~~~-~~~~~~~~~~~~-~~~~~~l~~~~ 80 (146)
-.+++|+++.|.|.+...+++..+ .|+++...... ........|+.- ++..+++....
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~ 115 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGM 115 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCc
Confidence 357999999999887666666554 46665432111 111122344444 45677776644
No 174
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=67.54 E-value=29 Score=22.03 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=32.7
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhh--cCCeeccccCCCC-CCceEEEEEe-CCeEEEEEee
Q 032174 24 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDK-LPYRGAWLWV-GAEMIHLMEL 79 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~--lg~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~~~ 79 (146)
.+++|+++.|.|+++..+.+..+ .|.++........ ......|+.- ++..++|+..
T Consensus 66 ~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 66 GKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 46889999999999876555443 5776543211111 1112344443 4568888663
No 175
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=67.18 E-value=25 Score=21.12 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=22.7
Q ss_pred cEEEEEeCCHHHHHHHHHH-CCCeEecc
Q 032174 96 RHTCIAIRDVSKLKMILDK-AGISYTLS 122 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~-~G~~~~~~ 122 (146)
.|+.|.|+|+++..+...+ .|.++...
T Consensus 1 ~Hi~l~v~Dl~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 1 FHLAIPVRDLEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred CeEEEEeCCHHHHHHHHHHhcCCEEeec
Confidence 3899999999999999986 69887543
No 176
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=65.72 E-value=11 Score=24.84 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=53.1
Q ss_pred EEEEeCCHHHHHHHHhhhcC----CeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEe--
Q 032174 29 VGILCENLERSLEFYQNILG----LEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI-- 102 (146)
Q Consensus 29 v~l~v~d~~~~~~FY~~~lg----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v-- 102 (146)
|...++|.++-.+-..+.++ |++....- .......+-+...+..++++..+.+.... .++.|.-++-
T Consensus 37 Iic~~~d~~~F~~~l~~~f~~~~~f~~~~~~i-~~~~~~~~~F~~~~~~~EiF~Q~~Pv~~Q------nayrHm~iE~rL 109 (152)
T PF14091_consen 37 IICEVPDPEAFEQLLQSLFGQFEGFTIKEKTI-RGEPSIVANFRYEGFPFEIFGQPIPVEEQ------NAYRHMLIEHRL 109 (152)
T ss_pred EEEEeCCHHHHHHHHHHHhccCCCceeeecee-CCceeEEEEEEECCceEEEeecCCChhhH------HHHHHHHHHHHH
Confidence 66788999988886666554 44433211 22223456677788899999866543221 2344544332
Q ss_pred -----CCHHHHHHHHHHCCCeEe
Q 032174 103 -----RDVSKLKMILDKAGISYT 120 (146)
Q Consensus 103 -----~d~~~~~~~l~~~G~~~~ 120 (146)
+++.+..-+||+.|++..
T Consensus 110 L~~~g~~~r~~Ii~LK~~GlKTE 132 (152)
T PF14091_consen 110 LELHGPSFREEIIELKESGLKTE 132 (152)
T ss_pred HHhcCHHHHHHHHHHHHcCCcch
Confidence 377788889999998764
No 177
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=64.02 E-value=13 Score=24.14 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.6
Q ss_pred CccEEEEEeCCHHHHHHHHHH-CCCeEe
Q 032174 94 RDRHTCIAIRDVSKLKMILDK-AGISYT 120 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~ 120 (146)
.+.|+++.|.|+++..+...+ .|.++.
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~ 30 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVS 30 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEE
Confidence 368999999999999999977 798875
No 178
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=63.99 E-value=9.6 Score=28.02 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=21.9
Q ss_pred CCCccEEEEEe------CCHHHHHHHHHHCCCeEe
Q 032174 92 GGRDRHTCIAI------RDVSKLKMILDKAGISYT 120 (146)
Q Consensus 92 ~~~~~hl~~~v------~d~~~~~~~l~~~G~~~~ 120 (146)
|-..+|+...| .|++++.+.|+++|+++.
T Consensus 182 G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 182 GYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp TCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred ccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 44568999999 999999999999999986
No 179
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=61.18 E-value=31 Score=21.13 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=26.7
Q ss_pred HHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEEEeec
Q 032174 105 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 105 ~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
+.++.+-|++.|+ ..+++|+.+|.+.++...|+.
T Consensus 26 WPE~~a~lk~agi-------~nYSIfLde~~n~lFgy~E~~ 59 (105)
T COG3254 26 WPELLALLKEAGI-------RNYSIFLDEEENLLFGYWEYE 59 (105)
T ss_pred cHHHHHHHHHcCC-------ceeEEEecCCcccEEEEEEEc
Confidence 4566777888886 478889988999988888764
No 180
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=61.08 E-value=16 Score=28.70 Aligned_cols=33 Identities=33% Similarity=0.380 Sum_probs=26.9
Q ss_pred HHHHHHCCCeEec----cCCCceEEEEECCCCCeEEE
Q 032174 109 KMILDKAGISYTL----SKSGRPAIFTRDPDANALEF 141 (146)
Q Consensus 109 ~~~l~~~G~~~~~----~~~g~~~~~~~DpdG~~ie~ 141 (146)
...|.++|+++.. +..|++...++|+||+..|-
T Consensus 16 a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~ 52 (485)
T COG3349 16 AYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEH 52 (485)
T ss_pred HHHHHhCCCceEEEeccCccCceeeeeecCCCCeeee
Confidence 4578899988753 34689999999999999984
No 181
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=60.33 E-value=23 Score=18.90 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEEEeec
Q 032174 104 DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 104 d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
++++.-++...+|-.+......+ .+-..+|||..+-+.+..
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~~~~g-~~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAAGPPG-PVAAFAPDGRLVALLEER 45 (56)
T ss_dssp E--HHHHHHHHTT---B-----S--EEEE-TTS-EEEEEEEE
T ss_pred ECCHHHHHHHhCCCccCCCCCCc-eEEEECCCCcEEEEEEcc
Confidence 45555666778887776543323 355779999999998754
No 182
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=59.27 E-value=7.1 Score=27.37 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=28.2
Q ss_pred EEEeCCHHHHHHHHHHCCCeEeccC--CCceEEEEECCCCCeEEEE
Q 032174 99 CIAIRDVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFT 142 (146)
Q Consensus 99 ~~~v~d~~~~~~~l~~~G~~~~~~~--~g~~~~~~~DpdG~~ie~~ 142 (146)
+|+-.|.+.+++.| .|+.+...+ .+...|...||||+-..++
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (228)
T PRK06704 183 SIREERPELLTKLL--PTIDFTKLPSKQPVLLFNVKQPSSYSCMLC 226 (228)
T ss_pred HHHhcCHHHHHHHh--ccceeeecccccceEEEEeeCCCccchhhc
Confidence 34444666666633 677776543 4678899999999976543
No 183
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=58.26 E-value=37 Score=20.18 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=30.8
Q ss_pred cEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEECCCCCeEEEEe
Q 032174 96 RHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~DpdG~~ie~~~ 143 (146)
.+++|.|.|+++..+...+ .|.++..... ....++.-.++..+.+.+
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~-~~~~~l~~~~~~~~~l~~ 49 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKED-RRLAFFWVGGRGMLLLFD 49 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecCC-CceEEEEcCCCcEEEEEe
Confidence 4689999999999999975 6998876322 233444444445454443
No 184
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=57.40 E-value=14 Score=25.12 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=28.9
Q ss_pred ccEEEEEeCCH---HHHHHHHHHCCCeEeccCCCceEEEEEC---C---CCCeEEEEee
Q 032174 95 DRHTCIAIRDV---SKLKMILDKAGISYTLSKSGRPAIFTRD---P---DANALEFTQV 144 (146)
Q Consensus 95 ~~hl~~~v~d~---~~~~~~l~~~G~~~~~~~~g~~~~~~~D---p---dG~~ie~~~~ 144 (146)
..|+|++|-+. +++.+.+.+.|-.++...-+++-+++.+ | .|..|+++|-
T Consensus 35 ~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vEL 93 (185)
T PF06185_consen 35 IDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVEL 93 (185)
T ss_dssp EEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred CcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEe
Confidence 47999999854 5556777778866655443344444333 2 3666666653
No 185
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=57.21 E-value=41 Score=20.25 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=30.7
Q ss_pred EEEEEeCCHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEEEe
Q 032174 97 HTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 97 hl~~~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~~~ 143 (146)
...|.|.|+++..+...+.|.+.....+. ...++. .+|..+++.+
T Consensus 5 ~~~l~v~Dl~~s~~FY~~lG~~~~~~~~~-~~~~~~-~~~~~l~l~~ 49 (120)
T cd08350 5 IPNLPSRDLDATEAFYARLGFSVGYRQAA-GYMILR-RGDLELHFFA 49 (120)
T ss_pred cceeEcCCHHHHHHHHHHcCCEEEecCCC-CEEEEE-cCCEEEEEEe
Confidence 46788999999999998899987654432 233343 3455666664
No 186
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.52 E-value=31 Score=19.89 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=22.0
Q ss_pred cEEEEEeCC----HHHHHHHHHHCCCeEec
Q 032174 96 RHTCIAIRD----VSKLKMILDKAGISYTL 121 (146)
Q Consensus 96 ~hl~~~v~d----~~~~~~~l~~~G~~~~~ 121 (146)
..+.++++| ++++.+.|+++|+.+..
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 567788888 89999999999998754
No 187
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=54.47 E-value=45 Score=19.94 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=21.9
Q ss_pred cEEEEEeCCHHHHHHHHHHC-CCeEecc
Q 032174 96 RHTCIAIRDVSKLKMILDKA-GISYTLS 122 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~~-G~~~~~~ 122 (146)
.|+.+.|+|+++..+.+.+. |.+....
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~ 30 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKV 30 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecc
Confidence 68999999999999888764 8876443
No 188
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=53.76 E-value=43 Score=19.50 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=21.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCe
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLE 50 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~ 50 (146)
.+-.|+.+.|.|++++.+-..+ .|.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~-~G~~ 82 (112)
T cd08349 57 GRGGSVYIEVEDVDALYAELKA-KGAD 82 (112)
T ss_pred CCcEEEEEEeCCHHHHHHHHHH-cCCc
Confidence 3455788999999999998877 7887
No 189
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=52.78 E-value=48 Score=19.81 Aligned_cols=26 Identities=4% Similarity=0.162 Sum_probs=21.1
Q ss_pred eeEEEEeCCHHHHHHHHhhhcCCeecc
Q 032174 27 HHVGILCENLERSLEFYQNILGLEINE 53 (146)
Q Consensus 27 ~hv~l~v~d~~~~~~FY~~~lg~~~~~ 53 (146)
.++.+.|.|++++.+...+ .|.+...
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~ 98 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVS 98 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEecc
Confidence 4788999999999888866 6887754
No 190
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.72 E-value=11 Score=26.44 Aligned_cols=21 Identities=29% Similarity=0.684 Sum_probs=17.9
Q ss_pred CCHHHHHHHHhhhcCCeeccc
Q 032174 34 ENLERSLEFYQNILGLEINEA 54 (146)
Q Consensus 34 ~d~~~~~~FY~~~lg~~~~~~ 54 (146)
.|+.+++.||.+.||+++..-
T Consensus 145 a~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred hccHHHHHHHHHhcCceeeec
Confidence 467788999999999998764
No 191
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=51.70 E-value=38 Score=18.23 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=20.0
Q ss_pred cEEEEEeCCHHHHHHHHHHCCCeEe
Q 032174 96 RHTCIAIRDVSKLKMILDKAGISYT 120 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~~G~~~~ 120 (146)
..+.+.++|.+++.+.|+++|+++.
T Consensus 41 ~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 41 GILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CEEEEEECCHHHHHHHHHHCCCEEE
Confidence 3466777898899999999998763
No 192
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.75 E-value=38 Score=19.32 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=25.7
Q ss_pred HHHHHHHHHHCCCeEeccC---C---CceEEEEECCCCCeEE
Q 032174 105 VSKLKMILDKAGISYTLSK---S---GRPAIFTRDPDANALE 140 (146)
Q Consensus 105 ~~~~~~~l~~~G~~~~~~~---~---g~~~~~~~DpdG~~ie 140 (146)
+-.+..-|.++|+.+.... . -...||+.|.+|..+.
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 4456677888998875432 2 2577999999998763
No 193
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=50.13 E-value=53 Score=19.46 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=21.5
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeeccc
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEINEA 54 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~ 54 (146)
...|+.+.|.|++++.+-..+ .|.++...
T Consensus 68 ~~~~~~~~v~d~~~~~~~l~~-~G~~~~~~ 96 (122)
T cd07246 68 TPVSLHLYVEDVDATFARAVA-AGATSVMP 96 (122)
T ss_pred ceEEEEEEeCCHHHHHHHHHH-CCCeEecC
Confidence 456899999999987776654 58877653
No 194
>PRK06724 hypothetical protein; Provisional
Probab=49.87 E-value=62 Score=20.17 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=29.8
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhh--cCCeeccccCC-C--CCCceEEEEEe-CCeEEEEEee
Q 032174 24 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPH-D--KLPYRGAWLWV-GAEMIHLMEL 79 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~--lg~~~~~~~~~-~--~~~~~~~~~~~-~~~~~~l~~~ 79 (146)
.+..|+++.|.+.+.-.++++.+ .|.++...... . ..+...+++.- ++..+++...
T Consensus 62 ~g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 62 LGPRHICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred CCceeEEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 36789999985554445555444 67776532111 1 12223343433 4557777654
No 195
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=48.08 E-value=59 Score=19.46 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=30.1
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcC-CeeccccCCCCCCceEEEEEe-CCeEEEEE
Q 032174 25 SVHHVGILCENLERSLEFYQNILG-LEINEARPHDKLPYRGAWLWV-GAEMIHLM 77 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg-~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 77 (146)
+..|+.+.|.|+++..+-..+ .| .++.........+.+.+++.- .+..+++.
T Consensus 64 ~~~~l~~~v~dvd~~~~~l~~-~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~ 117 (120)
T cd09011 64 NNFELYFEEEDFDAFLDKLKR-YDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVG 117 (120)
T ss_pred CceEEEEEehhhHHHHHHHHh-cCCcEEecCcccCCCccEEEEEECCCCCEEEEe
Confidence 356899999999999999977 54 344432222222334444443 33355443
No 196
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=47.32 E-value=17 Score=17.03 Aligned_cols=19 Identities=26% Similarity=0.601 Sum_probs=14.3
Q ss_pred EeCCHHHHHHHHhhhcCCe
Q 032174 32 LCENLERSLEFYQNILGLE 50 (146)
Q Consensus 32 ~v~d~~~~~~FY~~~lg~~ 50 (146)
...|.++++.+|++.|.+.
T Consensus 11 ~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HCT-HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 3578999999999987443
No 197
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=47.32 E-value=66 Score=19.79 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHCCCeEec--cC----CCceEEEEECCCCCeEEEEeec
Q 032174 103 RDVSKLKMILDKAGISYTL--SK----SGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 103 ~d~~~~~~~l~~~G~~~~~--~~----~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
.++...+.+|++.| .+.. .+ +|.-.....|++|.+.+...+.
T Consensus 24 k~f~~~~~~l~~~G-~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~ 71 (109)
T PF06923_consen 24 KNFNKAYKELRKKG-RVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMK 71 (109)
T ss_pred HHHHHHHHHHHhCC-cEEEeeecCcccCCeEEEEEECCCCcEEEEEEEe
Confidence 35677889999999 4322 21 3556678899999999877654
No 198
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=46.82 E-value=96 Score=21.51 Aligned_cols=46 Identities=9% Similarity=0.263 Sum_probs=33.4
Q ss_pred EEEEe--CCHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEEEee
Q 032174 98 TCIAI--RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 98 l~~~v--~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~~~~ 144 (146)
+-|-| +|++.+.+.|.+.|+...... +....|...+.|..||+...
T Consensus 97 iDlLV~~~d~~~a~~~L~~~Gy~~~~~~-~~~~~~~~~~~~~~idlH~~ 144 (249)
T PF14907_consen 97 IDLLVPPEDLERAVELLEELGYRIESPS-EHHWVYSHEPKGISIDLHWR 144 (249)
T ss_pred eEEEEeCCcHHHHHHHHHHcCCEeccCC-CcceEEEecCCCEEEEEEec
Confidence 56666 599999999999999877653 33444444478888888753
No 199
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=45.45 E-value=34 Score=17.69 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=13.1
Q ss_pred ceEEEEECCCCCeEEEE
Q 032174 126 RPAIFTRDPDANALEFT 142 (146)
Q Consensus 126 ~~~~~~~DpdG~~ie~~ 142 (146)
.-...+.||||..+.|.
T Consensus 28 ~GsY~y~~pdG~~~~V~ 44 (52)
T PF00379_consen 28 RGSYSYIDPDGQTRTVT 44 (52)
T ss_pred EEEEEEECCCCCEEEEE
Confidence 34567889999988775
No 200
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=44.68 E-value=28 Score=14.80 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=8.8
Q ss_pred EEEEECCCCCeEE
Q 032174 128 AIFTRDPDANALE 140 (146)
Q Consensus 128 ~~~~~DpdG~~ie 140 (146)
...+.|++|+++-
T Consensus 8 ~~i~~D~~G~lWi 20 (24)
T PF07494_consen 8 YSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEE-TTSCEEE
T ss_pred EEEEEcCCcCEEE
Confidence 4567899998873
No 201
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=43.01 E-value=40 Score=16.08 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=18.1
Q ss_pred cCCCceEEEEECCCCCeEEEEeec
Q 032174 122 SKSGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 122 ~~~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
.+.|...-|-+|+.|+++.+..+.
T Consensus 12 d~~G~~~~y~YD~~g~l~~~t~~~ 35 (38)
T PF05593_consen 12 DPDGRTTRYTYDAAGRLTSVTDPD 35 (38)
T ss_pred cCCCCEEEEEECCCCCEEEEECCC
Confidence 345667778899999998886554
No 202
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=40.40 E-value=90 Score=21.07 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHCCCeEecc----CCCceEEEEECCCCCeEEEEeec
Q 032174 104 DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 104 d~~~~~~~l~~~G~~~~~~----~~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
.++++.++..+....-... -.|...|.+.++||..+.+...+
T Consensus 79 k~del~akF~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~ 124 (181)
T COG1791 79 KLDELRAKFLQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEK 124 (181)
T ss_pred cHHHHHHHHHHHhccCCceEEEEEecceEEEEECCCCcEEEEEEcc
Confidence 4666666555433222111 15678899999999999887643
No 203
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=40.10 E-value=46 Score=15.95 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=14.6
Q ss_pred CCCceEEEEECCCCCeEEEEeec
Q 032174 123 KSGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 123 ~~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
+.|...-|-+|..|++++...++
T Consensus 13 p~G~~~~~~YD~~Grl~~~tdp~ 35 (42)
T TIGR01643 13 ADGTTTRYTYDAAGRLVEITDAD 35 (42)
T ss_pred CCCCEEEEEECCCCCEEEEECCC
Confidence 44556667777777777665443
No 204
>PTZ00330 acetyltransferase; Provisional
Probab=39.94 E-value=41 Score=20.94 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=18.0
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccc
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEA 54 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~ 54 (146)
+..+.+.++ +.+.+||++ +||+....
T Consensus 116 ~~~l~l~~n--~~a~~~y~k-~GF~~~~~ 141 (147)
T PTZ00330 116 CYKVILDCT--EDMVAFYKK-LGFRACER 141 (147)
T ss_pred CCEEEEecC--hHHHHHHHH-CCCEEece
Confidence 344555553 578999976 99987763
No 205
>PF15121 TMEM71: TMEM71 protein family
Probab=39.40 E-value=33 Score=21.99 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=15.4
Q ss_pred HHHHCCCeEeccCCCceEEEEECCCCCe
Q 032174 111 ILDKAGISYTLSKSGRPAIFTRDPDANA 138 (146)
Q Consensus 111 ~l~~~G~~~~~~~~g~~~~~~~DpdG~~ 138 (146)
+|..+|+-+-.+. -|+.|.|||+
T Consensus 63 RLLtNGYYi~TED-----SFl~D~dGNI 85 (149)
T PF15121_consen 63 RLLTNGYYIWTED-----SFLCDEDGNI 85 (149)
T ss_pred hhhcCccEEEecc-----ceeecCCCCE
Confidence 5566666554433 5788999986
No 206
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=39.30 E-value=39 Score=21.32 Aligned_cols=86 Identities=9% Similarity=0.122 Sum_probs=48.3
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccC------CCCCCceEEEEEeC--CeEEEEEe-eCCCCCCCCCCCCCCCcc
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARP------HDKLPYRGAWLWVG--AEMIHLME-LPNPDPLSGRPEHGGRDR 96 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~--~~~~~l~~-~~~~~~~~~~~~~~~~~~ 96 (146)
+.-+-+.|++.+.+.+-.++ -||.+..... +.........-.++ +..+..+. ..... .-.
T Consensus 42 FGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek----------~KA 110 (142)
T COG4747 42 FGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK----------QKA 110 (142)
T ss_pred cceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC----------ceE
Confidence 44566789999999999988 6888765321 00000000000001 11111111 11110 114
Q ss_pred EEEEEeCCHHHHHHHHHHCCCeEecc
Q 032174 97 HTCIAIRDVSKLKMILDKAGISYTLS 122 (146)
Q Consensus 97 hl~~~v~d~~~~~~~l~~~G~~~~~~ 122 (146)
-+-++++|+|+....|.+.|+++..+
T Consensus 111 lli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 111 LLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred EEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 58889999999999999999987643
No 207
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.12 E-value=55 Score=17.76 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=19.6
Q ss_pred ccEEEEEeC---CHHHHHHHHHHCCCeE
Q 032174 95 DRHTCIAIR---DVSKLKMILDKAGISY 119 (146)
Q Consensus 95 ~~hl~~~v~---d~~~~~~~l~~~G~~~ 119 (146)
..++.+++. .++++.+.|+++|+.+
T Consensus 39 ~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 39 RVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 366778886 5778899999999865
No 208
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=38.82 E-value=97 Score=20.83 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=25.3
Q ss_pred EEEEEeCCHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEE
Q 032174 97 HTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALE 140 (146)
Q Consensus 97 hl~~~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie 140 (146)
-+.+..++.+++.+.|++.|+.+.... ..-++.+++|-.+.
T Consensus 46 Di~~~~~~~~~l~~~L~~~G~~ite~~---~~~~l~~~~g~llD 86 (174)
T PF10706_consen 46 DIFVPREDQAELRALLKELGYRITETT---DYGFLADDDGRLLD 86 (174)
T ss_dssp EEEEEGGGHHHHHHHHHHTT-EEEEEE---TEEEEEETTTEEEE
T ss_pred EEEEEcchhHHHHHHHHHCCCEEEEec---cccEEEcCCCCEEE
Confidence 355555689999999999999876532 12225555554443
No 209
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=38.58 E-value=1e+02 Score=19.39 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=31.0
Q ss_pred eCCHHHHHHHHHHCCC-eEeccC----CCceEEEEECCCCCeEEEEeecC
Q 032174 102 IRDVSKLKMILDKAGI-SYTLSK----SGRPAIFTRDPDANALEFTQVDG 146 (146)
Q Consensus 102 v~d~~~~~~~l~~~G~-~~~~~~----~g~~~~~~~DpdG~~ie~~~~~~ 146 (146)
+.++...+.+|.++|- .+...+ +|.-.....|.+|.+++-..+.+
T Consensus 24 ik~Fn~~~~~L~~~G~V~iGr~~grf~~g~IvllaiD~~~~I~d~~~M~G 73 (118)
T PRK10234 24 ISRFNRAFDTLCQQGRVGVGRSSGRFKPRVVVALALDEQQRVVDTLFMKG 73 (118)
T ss_pred HHHHHHHHHHHHhcCceEEecccCccCCCeEEEEEECCCCcEEeeEEEcc
Confidence 3467778899999984 222221 34556788999999998776643
No 210
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=38.13 E-value=45 Score=21.22 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=20.8
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeec
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEIN 52 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~ 52 (146)
-+|+.+...|..+...-..+.||+++.
T Consensus 113 ~hH~~~~~G~~~~~l~~~~~~lgi~v~ 139 (142)
T PF02952_consen 113 AHHVALVYGDYAEELKELAKYLGIEVV 139 (142)
T ss_dssp SSEEEEEES--HHHHHHHHHHHT--EE
T ss_pred CCeEEEEcCcHHHHHHHHHHHcCCEEE
Confidence 679999999999999999999999875
No 211
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.68 E-value=1.3e+02 Score=20.33 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=45.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEe------CCeEEEEEeeCCCCCCCCCCCCCCCccE
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV------GAEMIHLMELPNPDPLSGRPEHGGRDRH 97 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~h 97 (146)
..++|+.|+|.+.+.+..|-...+-+-..-... --.+...+-+.+ .+-.+.++..+-+... ..|. .|+-|
T Consensus 38 ~~~DHIaLRvh~~qtAk~wr~~~lqcG~~lS~n-~iNGRpI~li~l~~Pl~v~~w~id~iELP~P~~K-~YP~--egWEH 113 (185)
T COG3102 38 YTADHIALRVHQEQTAKRWRRGLLQCGELLSEN-LINGRPICLIKLHQPLQVAHWQIDIIELPYPKNK-RYPH--EGWEH 113 (185)
T ss_pred cccceeEEEeCcHHHHHHHHHHHHHHHHHhhhh-hcCCceEEEEEcCCcceecceEEEEEEccCCcCC-CCCC--cCcee
Confidence 458999999999999888876554432221111 001112233343 3335666665544321 1222 45789
Q ss_pred EEEEeC-CHHHHHH
Q 032174 98 TCIAIR-DVSKLKM 110 (146)
Q Consensus 98 l~~~v~-d~~~~~~ 110 (146)
+-|..+ +-+++..
T Consensus 114 IEiVlP~~peel~~ 127 (185)
T COG3102 114 IEIVLPGDPEELNA 127 (185)
T ss_pred EEEEcCCChHHHHH
Confidence 999998 5555433
No 212
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=37.68 E-value=43 Score=21.57 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=20.9
Q ss_pred eeEEEEeC-CHHHHHHHHhhhcCCeeccccC
Q 032174 27 HHVGILCE-NLERSLEFYQNILGLEINEARP 56 (146)
Q Consensus 27 ~hv~l~v~-d~~~~~~FY~~~lg~~~~~~~~ 56 (146)
..+.|.|. +=+.++.||++ +||+......
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~~~ 156 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKIRK 156 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEeeeh
Confidence 45556653 44499999988 9999877544
No 213
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.59 E-value=1.2e+02 Score=21.06 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=50.5
Q ss_pred cceeeeecccCCCCCCceeeeeeeEEEEe-CCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCC
Q 032174 5 GGILKKEPIRDSDKIDYGVVSVHHVGILC-ENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNP 82 (146)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~hv~l~v-~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (146)
||.+.+.|.....+...-+-+++-.+.+- -.+|++++|-.+.+.+-...+.. ....++.+.+...+....++..+..
T Consensus 136 GG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGs-SGGviR~~~I~~~Gver~~~~~d~~ 213 (224)
T KOG0174|consen 136 GGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGS-SGGVIRLVIINKAGVERRFFPGDKL 213 (224)
T ss_pred CceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCC-CCCEEEEEEEccCCceEEEecCCcc
Confidence 67777877777666556666776666664 37999999999999887776433 2233344444445666666655443
No 214
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=36.38 E-value=69 Score=18.43 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=15.8
Q ss_pred EEeCCHHHHHHHHhhhcCCeecc
Q 032174 31 ILCENLERSLEFYQNILGLEINE 53 (146)
Q Consensus 31 l~v~d~~~~~~FY~~~lg~~~~~ 53 (146)
....+=..+.++|++ |||+...
T Consensus 60 ~v~~~N~~s~~ly~k-lGf~~~~ 81 (86)
T PF08445_consen 60 YVDADNEASIRLYEK-LGFREIE 81 (86)
T ss_dssp EEETT-HHHHHHHHH-CT-EEEE
T ss_pred EEECCCHHHHHHHHH-cCCEEEE
Confidence 344677889999988 9999875
No 215
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=36.03 E-value=74 Score=19.58 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=24.9
Q ss_pred eCCHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCeE
Q 032174 102 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANAL 139 (146)
Q Consensus 102 v~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~i 139 (146)
-.|++.+.+.|.+.|+++.... ..++.++|.--+|.++
T Consensus 63 ~rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 63 ERNVEAARELLAEEGIPIVAEDVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEEEcCCCEEE
Confidence 3489999999999999997643 3456677655555544
No 216
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=35.94 E-value=48 Score=17.06 Aligned_cols=17 Identities=6% Similarity=0.159 Sum_probs=12.7
Q ss_pred CCceEEEEECCCCCeEE
Q 032174 124 SGRPAIFTRDPDANALE 140 (146)
Q Consensus 124 ~g~~~~~~~DpdG~~ie 140 (146)
.|.+.|.+++.+|.+|-
T Consensus 3 ~g~~~f~L~a~ng~via 19 (49)
T PF07411_consen 3 DGQFRFRLKAGNGEVIA 19 (49)
T ss_dssp TSEEEEEEE-TTS-EEE
T ss_pred CCCEEEEEEcCCCCEEE
Confidence 46788999999999986
No 217
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=33.76 E-value=77 Score=25.48 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=24.3
Q ss_pred eeeeEEEEeCCHHHHHHHHhhhcCCeec
Q 032174 25 SVHHVGILCENLERSLEFYQNILGLEIN 52 (146)
Q Consensus 25 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~ 52 (146)
.=.++-|.+...+++.+||++.||....
T Consensus 432 as~~Lplhi~~t~~Ae~~y~~~~G~rll 459 (572)
T KOG1249|consen 432 ASEQLPLHIGPTEEAEAFYEKHLGTRLL 459 (572)
T ss_pred ecCcceeeecchhhHHHHHHHhcCCeee
Confidence 3456778889999999999999999887
No 218
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=33.17 E-value=1.4e+02 Score=19.33 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=31.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEE-eCCeEEEEEeeCC
Q 032174 24 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLW-VGAEMIHLMELPN 81 (146)
Q Consensus 24 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 81 (146)
.+++-+++.|.|.+++.+-=.+ +|-+....... .......-+. .|+..+.|+....
T Consensus 72 ~sv~aiafrV~Da~~A~~rA~~-~GA~~~~~~~~-~~e~~~paI~g~G~sl~yfVdr~~ 128 (139)
T PF14696_consen 72 PSVCAIAFRVDDAAAAYERAVA-LGAEPVQEPTG-PGELNIPAIRGIGGSLHYFVDRYG 128 (139)
T ss_dssp SEEEEEEEEES-HHHHHHHHHH-TT--EEEEEEE-TT-BEEEEEE-CCC-EEEEEE--S
T ss_pred CEEEEEEEEeCCHHHHHHHHHH-cCCcCcccCCC-CCcEeeeeEEccCCCEEEEEecCC
Confidence 3578899999999998887655 77777664321 2222333333 3777888877543
No 219
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=32.30 E-value=1.1e+02 Score=21.06 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=23.8
Q ss_pred EeCCHHHHHHHHHHCCCeEeccCCCceEEEEECCCC
Q 032174 101 AIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDA 136 (146)
Q Consensus 101 ~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG 136 (146)
.+.+++++.+.|.+.|+.+.....+...+.+.|..+
T Consensus 183 ~~~s~~~f~~~L~~~g~~v~~~~~~~~~~~~~~~~~ 218 (242)
T PF03432_consen 183 KSSSFEDFIERLEEKGIEVRRKRGKYISYKLKDKNK 218 (242)
T ss_pred hCCCHHHHHHHHHHCCCEEEEcCCCeEEEecCCCCc
Confidence 345889999999999999983333333344444443
No 220
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=32.27 E-value=93 Score=17.13 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=18.1
Q ss_pred CCCceEEEEECCCCCeEEEEee
Q 032174 123 KSGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 123 ~~g~~~~~~~DpdG~~ie~~~~ 144 (146)
..|.+.+.+.|.+|+.|...+.
T Consensus 42 ~~G~WrV~V~~~~G~~l~~~~F 63 (66)
T PF11141_consen 42 QPGDWRVEVVDEDGQVLGSLRF 63 (66)
T ss_pred CCcCEEEEEEcCCCCEEEEEEE
Confidence 3678999999999999976653
No 221
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=31.88 E-value=47 Score=18.18 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=16.0
Q ss_pred eeeeEEEEe-CCHHHHHHHHhhhcCCe
Q 032174 25 SVHHVGILC-ENLERSLEFYQNILGLE 50 (146)
Q Consensus 25 ~l~hv~l~v-~d~~~~~~FY~~~lg~~ 50 (146)
++..+.+.| .+-..+.+||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 345555555 445558899987 7764
No 222
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.66 E-value=1.1e+02 Score=20.39 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=27.1
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCe
Q 032174 100 IAIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 138 (146)
Q Consensus 100 ~~v~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ 138 (146)
+--.|++.+.+.|.+.|+++.... ..++.++|.--+|..
T Consensus 112 IG~rNi~~a~~~L~~~gi~i~a~DvGG~~gR~i~f~~~tG~v 153 (167)
T PRK13498 112 VADKNIHAALALAEQNGLHLKAQDLGSTGHRSIIFDLWNGNV 153 (167)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 334489999999999999997654 234666664444544
No 223
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.50 E-value=1.1e+02 Score=20.29 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=26.0
Q ss_pred eCCHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCe
Q 032174 102 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 138 (146)
Q Consensus 102 v~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ 138 (146)
-.|++.+.+.|++.|+++.... ..++.++|.--+|..
T Consensus 111 ~rNv~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v 150 (162)
T PRK13490 111 NRNGKAVKKKLKELSIPILAEDIGGNKGRTMIFDTSDGKV 150 (162)
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence 3489999999999999997543 335666664444544
No 224
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=31.50 E-value=1.4e+02 Score=18.93 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=30.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHCCCeEe--ccC----------C------------CceEEEEECCCCCeEEEEe
Q 032174 95 DRHTCIAIRDVSKLKMILDKAGISYT--LSK----------S------------GRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~~G~~~~--~~~----------~------------g~~~~~~~DpdG~~ie~~~ 143 (146)
..-+++.+++.+++.+.+++.|+.+. ... . -....++.|++|.++..+.
T Consensus 65 v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 65 VVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred CEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 34566666766666666666665431 111 0 0145689999999887754
No 225
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.50 E-value=1.1e+02 Score=20.18 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=26.8
Q ss_pred eCCHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCeE
Q 032174 102 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANAL 139 (146)
Q Consensus 102 v~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~i 139 (146)
-.|++.+.+.|++.|+++.... ..++.++|.--+|..+
T Consensus 104 ~rNi~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 104 ARNVEAVKKHLKDFGIKLVAEDTGGNRARSIEYNIETGKLL 144 (159)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 3489999999999999997543 3356666655555443
No 226
>PF05881 CNPase: 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase); InterPro: IPR008431 This family consists of the eukaryotic protein 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP). 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP) is one of the earliest myelin-related proteins expressed in differentiating oligodendrocytes and Schwann cells. CNP is abundant in the central nervous system and in oligodendrocytes. This protein is also found in mammalian photoreceptor cells, testis and lymphocytes. Although the biological function of CNP is unknown, it is thought to play a significant role in the formation of the myelin sheath, where it comprises 4% of total protein. CNP selectively cleaves 2',3'-cyclic nucleotides to produce 2'-nucleotides in vitro. Although physiologically relevant substrates with 2',3'-cyclic termini are still unknown, numerous cyclic phosphate containing RNAs occur transiently within eukaryotic cells. Other known protein families capable of hydrolysing 2',3'-cyclic nucleotides include tRNA ligases and plant cyclic phosphodiesterases. The catalytic domains from all these proteins contain two tetra-peptide motifs H-X-T/S-X, where X is usually a hydrophobic residue. Mutation of either histidine in CNP abolishes enzymatic activity [].; GO: 0004113 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity, 0009214 cyclic nucleotide catabolic process, 0016020 membrane; PDB: 2YDB_A 2Y3X_B 2Y1P_A 2XMI_A 2YDD_A 2YDC_A 2ILX_A 1WOJ_A 2I3E_A.
Probab=31.28 E-value=43 Score=23.41 Aligned_cols=70 Identities=16% Similarity=0.088 Sum_probs=36.4
Q ss_pred CHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCC-CCCC-CCCCCCCccEEEEEeC-CHHH
Q 032174 35 NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPD-PLSG-RPEHGGRDRHTCIAIR-DVSK 107 (146)
Q Consensus 35 d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~~~~~~~~~hl~~~v~-d~~~ 107 (146)
..+.-++.|.++|-+.+..-...+ ...++.+.+...++.||..+... ..+. .-+.+. -.|+.+.+. ++++
T Consensus 82 q~~~Vk~sygkaftL~isaLfvTp--rT~GArv~L~e~ql~LWp~D~~ke~~~~~~lp~GS-RAHiTLGcA~gVe~ 154 (235)
T PF05881_consen 82 QQEVVKKSYGKAFTLSISALFVTP--RTVGARVELTEEQLLLWPADVDKELSPSDSLPRGS-RAHITLGCAAGVEA 154 (235)
T ss_dssp T-HHHHHHTT-EEEEEEEEEEE-S--SEEEEEEE--HHHHHTS-TCSSCSCSTTTTS-TTT-TCEEEEEE-TT--T
T ss_pred hhHHHHHhccceEEEEEEEEEecc--ccccceeeechhhhccCCcchhcccCCCCCCCCCc-ceeEeeeccCCCcc
Confidence 345567789999888877644322 12467777777777777766433 2211 122333 489999986 4443
No 227
>PF12512 DUF3717: Protein of unknown function (DUF3717) ; InterPro: IPR022191 This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 117 amino acids in length. There is a conserved AIN sequence motif. There are two completely conserved residues (L and Y) that may be functionally important.
Probab=31.03 E-value=18 Score=20.51 Aligned_cols=15 Identities=13% Similarity=0.532 Sum_probs=12.9
Q ss_pred EEeCCHHHHHHHHhh
Q 032174 31 ILCENLERSLEFYQN 45 (146)
Q Consensus 31 l~v~d~~~~~~FY~~ 45 (146)
|.+.|++++++||+.
T Consensus 4 i~I~dIE~AIN~WR~ 18 (71)
T PF12512_consen 4 ISITDIEAAINYWRA 18 (71)
T ss_pred cCHHHHHHHHHHHHh
Confidence 567899999999987
No 228
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=31.01 E-value=82 Score=16.10 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=12.5
Q ss_pred HHHHHHHCCCeEeccCCC
Q 032174 108 LKMILDKAGISYTLSKSG 125 (146)
Q Consensus 108 ~~~~l~~~G~~~~~~~~g 125 (146)
-.++|+++|+.+...+.|
T Consensus 20 Q~~~L~~~Gi~~~~~~~G 37 (47)
T PF13986_consen 20 QIRWLRRNGIPFVVRADG 37 (47)
T ss_pred HHHHHHHCCCeeEECCCC
Confidence 367888999876655544
No 229
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=30.42 E-value=58 Score=20.13 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=18.7
Q ss_pred eeeeEEEEeC-CHHHHHHHHhhhcCCeecc
Q 032174 25 SVHHVGILCE-NLERSLEFYQNILGLEINE 53 (146)
Q Consensus 25 ~l~hv~l~v~-d~~~~~~FY~~~lg~~~~~ 53 (146)
+...+.|.+. +-..+.+||++ +||....
T Consensus 109 ~~~~i~l~~~~~n~~a~~fY~~-~Gf~~~~ 137 (144)
T PRK10146 109 GAEMTELSTNVKRHDAHRFYLR-EGYEQSH 137 (144)
T ss_pred CCcEEEEecCCCchHHHHHHHH-cCCchhh
Confidence 4445666553 33479999988 9997653
No 230
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=30.32 E-value=2.1e+02 Score=21.92 Aligned_cols=44 Identities=11% Similarity=-0.117 Sum_probs=30.1
Q ss_pred cEEEEEeCCHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEE
Q 032174 96 RHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 141 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~ 141 (146)
..+.+.+.|-....+||.+.=.+.... -+...++.||+|++...
T Consensus 346 r~v~v~aqdA~WEveRL~~L~~DpdSr--fgGLLff~d~~G~R~~~ 389 (399)
T TIGR03079 346 VEVKMEAKDALWEVQRLMALLGDPESR--FGGLLMFWDPEGNRIIN 389 (399)
T ss_pred eEEEEEEehhhhHHHHHHHHhcCcccc--cceEEEEEcCCCCEEeh
Confidence 678888888888889987654332221 14456777999998743
No 231
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=30.18 E-value=1.5e+02 Score=20.49 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=30.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHCCCeEeccC-----CCceEEEEECCC
Q 032174 93 GRDRHTCIAIRDVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPD 135 (146)
Q Consensus 93 ~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~Dpd 135 (146)
.++.+|.+.-.|+.++...++..|+.+.... ++.+.++|.-.|
T Consensus 32 ~~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~D 79 (204)
T PF12687_consen 32 KGLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKD 79 (204)
T ss_pred CCceEEecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCc
Confidence 4456677766799999999999999975432 345666665443
No 232
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=29.70 E-value=83 Score=19.80 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=21.4
Q ss_pred eeeeEEEEe-CCHHHHHHHHhhhcCCeeccccC
Q 032174 25 SVHHVGILC-ENLERSLEFYQNILGLEINEARP 56 (146)
Q Consensus 25 ~l~hv~l~v-~d~~~~~~FY~~~lg~~~~~~~~ 56 (146)
++..+.+.| .+=.++++||++ +||.......
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k-~GF~~~g~~~ 143 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKK-YGFEIEGTGK 143 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHH-CCCEEEeecc
Confidence 455666665 445668999976 9999876533
No 233
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.65 E-value=61 Score=17.37 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=15.7
Q ss_pred EEEEe---CCHHHHHHHHHHCCCe
Q 032174 98 TCIAI---RDVSKLKMILDKAGIS 118 (146)
Q Consensus 98 l~~~v---~d~~~~~~~l~~~G~~ 118 (146)
+.+.+ ++.+++.+.|+++|+.
T Consensus 45 ~~i~v~~~~~~~~~~~~L~~~G~~ 68 (69)
T cd04909 45 LRISFKTQEDRERAKEILKEAGYE 68 (69)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCc
Confidence 34444 3678899999999985
No 234
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=28.95 E-value=65 Score=19.84 Aligned_cols=14 Identities=43% Similarity=0.506 Sum_probs=12.0
Q ss_pred ceEEEEECCCCCeE
Q 032174 126 RPAIFTRDPDANAL 139 (146)
Q Consensus 126 ~~~~~~~DpdG~~i 139 (146)
...+.++|+||+.+
T Consensus 18 ~~RARlyd~dG~Ll 31 (112)
T PF13756_consen 18 RTRARLYDPDGNLL 31 (112)
T ss_pred CceEEEECCCCCEE
Confidence 56689999999987
No 235
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=28.83 E-value=39 Score=17.84 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=14.2
Q ss_pred eCCHHHHHHHHhhhcCC
Q 032174 33 CENLERSLEFYQNILGL 49 (146)
Q Consensus 33 v~d~~~~~~FY~~~lg~ 49 (146)
.+.++..++||++.|-|
T Consensus 37 ~k~P~~vI~FYE~~l~~ 53 (54)
T cd00034 37 VKCPLLVISFYEEHLTY 53 (54)
T ss_pred hhCcHHHHHHHHHhccc
Confidence 56889999999998765
No 236
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=28.56 E-value=1.4e+02 Score=19.92 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=26.3
Q ss_pred eCCHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCe
Q 032174 102 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 138 (146)
Q Consensus 102 v~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ 138 (146)
-.|++.+.+.|.+.|+++.... ..++.++|..-+|..
T Consensus 113 ~rNv~~a~~~L~~~gI~i~a~DvGG~~gR~i~f~~~tG~v 152 (163)
T PRK13494 113 LENSEFAVNTLNKYGIPILAKDFDQSKSRKIFVFPENFKV 152 (163)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 3489999999999999997543 345666665444544
No 237
>smart00300 ChSh Chromo Shadow Domain.
Probab=28.53 E-value=42 Score=18.18 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=14.8
Q ss_pred eCCHHHHHHHHhhhcCCe
Q 032174 33 CENLERSLEFYQNILGLE 50 (146)
Q Consensus 33 v~d~~~~~~FY~~~lg~~ 50 (146)
.+.++..++||++.|-|.
T Consensus 43 ~k~P~~vI~FYE~~l~~~ 60 (61)
T smart00300 43 VKCPQKVIRFYESHLTFQ 60 (61)
T ss_pred HHChHHHHHHHHHhCccC
Confidence 468899999999987653
No 238
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=28.39 E-value=1.3e+02 Score=17.64 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=20.6
Q ss_pred CccEEEEEeC---CHHHHHHHHHHCCCeEec
Q 032174 94 RDRHTCIAIR---DVSKLKMILDKAGISYTL 121 (146)
Q Consensus 94 ~~~hl~~~v~---d~~~~~~~l~~~G~~~~~ 121 (146)
+...++|.++ +++++.++|++.|+....
T Consensus 50 a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~d 80 (91)
T PF00585_consen 50 ARVLVGIEVPDAEDLEELIERLKALGYPYED 80 (91)
T ss_dssp SEEEEEEE-SSTHHHHHHHHHHTSSS-EEEC
T ss_pred eeEEEEEEeCCHHHHHHHHHHHHHcCCCeEE
Confidence 3577889988 467789999999988754
No 239
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=28.33 E-value=1.4e+02 Score=21.40 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=24.0
Q ss_pred HHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEE
Q 032174 105 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALE 140 (146)
Q Consensus 105 ~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie 140 (146)
.++..+.++++|+.+......--++++.|||++.+=
T Consensus 150 ~~~i~k~wk~rgi~F~~~k~slISV~~h~~d~~~lF 185 (250)
T PF14133_consen 150 AEKIQKYWKERGIKFNNDKASLISVFLHDPDDNSLF 185 (250)
T ss_pred HHHHHHHHHHcCceeCCCceEEEEEEEEcCCCCeEE
Confidence 344566778899999333334566788888877653
No 240
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=28.05 E-value=1.8e+02 Score=19.22 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=37.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHCCCeEec--cC----------------------CCceEEEEECCCCCeEEEE
Q 032174 94 RDRHTCIAIRDVSKLKMILDKAGISYTL--SK----------------------SGRPAIFTRDPDANALEFT 142 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~~G~~~~~--~~----------------------~g~~~~~~~DpdG~~ie~~ 142 (146)
+...+++.+|+..+......++|+.+.. .. .-.+.-|+.|+||.+..++
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 4578999999999998888899988621 10 0146789999999998776
No 241
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=27.84 E-value=90 Score=18.70 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=32.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHCCCe--EeccC----------C------CceEEEEECCCCCeE
Q 032174 94 RDRHTCIAIRDVSKLKMILDKAGIS--YTLSK----------S------GRPAIFTRDPDANAL 139 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~~G~~--~~~~~----------~------g~~~~~~~DpdG~~i 139 (146)
+..-+++..++.++..+.+.+.+.. +.... . .....|+.||+|.+.
T Consensus 59 ~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 59 GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEE
T ss_pred eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEE
Confidence 3466888888888888888777654 32221 1 456789999999875
No 242
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=27.74 E-value=48 Score=18.29 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=11.5
Q ss_pred HHHHHHHhhhcCCee
Q 032174 37 ERSLEFYQNILGLEI 51 (146)
Q Consensus 37 ~~~~~FY~~~lg~~~ 51 (146)
+++.+||.+ +||+.
T Consensus 66 ~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 66 PAAIKFYEK-LGFEE 79 (79)
T ss_dssp HHHHHHHHH-TTEEE
T ss_pred HHHHHHHHH-CcCCC
Confidence 689999988 88863
No 243
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=27.60 E-value=1.8e+02 Score=18.89 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=13.3
Q ss_pred CceEEEEECCCCCeEE
Q 032174 125 GRPAIFTRDPDANALE 140 (146)
Q Consensus 125 g~~~~~~~DpdG~~ie 140 (146)
+-...++.||+|+++.
T Consensus 112 ~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 112 ELPTVVVLKPDGDVLA 127 (146)
T ss_pred CCCEEEEECCCCcEEe
Confidence 5677899999999874
No 244
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=27.58 E-value=90 Score=16.65 Aligned_cols=16 Identities=6% Similarity=0.156 Sum_probs=11.1
Q ss_pred EEEEECCCCCeEEEEe
Q 032174 128 AIFTRDPDANALEFTQ 143 (146)
Q Consensus 128 ~~~~~DpdG~~ie~~~ 143 (146)
.|.|+|.+|+.+.+.-
T Consensus 11 ~F~FYDen~~lVrv~v 26 (54)
T PF12142_consen 11 SFLFYDENGQLVRVKV 26 (54)
T ss_dssp EEEEE-TTS-EEEEEG
T ss_pred eeEEECCCCCEEEEEh
Confidence 5788899999988753
No 245
>PHA00450 host dGTPase inhibitor
Probab=27.29 E-value=1.4e+02 Score=17.43 Aligned_cols=39 Identities=5% Similarity=-0.009 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHCCCeEeccC-------CCceEEEEECCCCCeEEEE
Q 032174 104 DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFT 142 (146)
Q Consensus 104 d~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DpdG~~ie~~ 142 (146)
++.++.++|.++.+.+.... .......+.|-+|++|.-.
T Consensus 11 afKaA~~RL~q~D~aVi~e~~~~~~~~k~c~~LRvedR~G~~i~s~ 56 (85)
T PHA00450 11 AFKAATARLFEHDVAVIVEEFYYENPAKMCMSLRVEDRSGHLIASR 56 (85)
T ss_pred HHHHHHHHHHhcceeEEEeehhccchhhheeEEEEEecCCCEeeee
Confidence 45677899999888875432 2245588999999998543
No 246
>PHA02540 61 DNA primase; Provisional
Probab=27.26 E-value=1.5e+02 Score=22.40 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=33.7
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEEEe
Q 032174 100 IAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 100 ~~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~~~ 143 (146)
+..++++.+...|+..|....... +.-.|=++|.+|++|-|--
T Consensus 148 ~~~~~~~~l~~~l~~~~~~~~~d~-~RImFPI~d~~G~vigFgG 190 (337)
T PHA02540 148 YFTREWQKLVNSIKPDTYKKEKPE-PRLVIPIFNKDGKIESFQG 190 (337)
T ss_pred CCCccHHHHHHHHhhccCchhccC-CeeEEEEECCCCCEEEEEe
Confidence 556789999999998887765443 5667789999999998753
No 247
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=27.22 E-value=1.5e+02 Score=19.59 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=26.0
Q ss_pred eCCHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCe
Q 032174 102 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 138 (146)
Q Consensus 102 v~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ 138 (146)
-.|++.+.+.|++.|+++.... ..++.++|.--+|..
T Consensus 106 ~rNi~~a~~~L~~~gi~i~a~dvGG~~gR~i~f~~~tG~v 145 (157)
T PRK13488 106 ERNIESAKETLKKLGIRIVAEDVGGDYGRTVKFDLKTGKV 145 (157)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCCCCcEEEEECCCCEE
Confidence 3589999999999999997644 235556664444544
No 248
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=27.07 E-value=83 Score=18.17 Aligned_cols=22 Identities=18% Similarity=0.156 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHCCCeEeccCC
Q 032174 103 RDVSKLKMILDKAGISYTLSKS 124 (146)
Q Consensus 103 ~d~~~~~~~l~~~G~~~~~~~~ 124 (146)
.++.+..+.|++.|+++...+.
T Consensus 34 taVwK~Iq~Lr~~G~~I~s~~~ 55 (79)
T COG1654 34 TAVWKHIQQLREEGVDIESVRG 55 (79)
T ss_pred HHHHHHHHHHHHhCCceEecCC
Confidence 3678889999999999987654
No 249
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.72 E-value=1.2e+02 Score=16.76 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=18.8
Q ss_pred EEEEeC--CHHHHHHHHHHCCCeEe
Q 032174 98 TCIAIR--DVSKLKMILDKAGISYT 120 (146)
Q Consensus 98 l~~~v~--d~~~~~~~l~~~G~~~~ 120 (146)
+++.++ |.+.+.+.|++.|+.+.
T Consensus 43 ~al~~~~~d~~~i~~~l~~~~i~~~ 67 (73)
T PF11823_consen 43 LALRFEPEDLEKIKEILEENGIEYE 67 (73)
T ss_pred EEEEEChhhHHHHHHHHHHCCCCee
Confidence 677765 89999999999998764
No 250
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=26.67 E-value=1.6e+02 Score=20.07 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=27.1
Q ss_pred eCCHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCeE
Q 032174 102 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANAL 139 (146)
Q Consensus 102 v~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~i 139 (146)
-.|++.+.+.|.+.|+++.... ..++.++|..-+|..+
T Consensus 111 ~rNi~~a~~~L~~~gI~i~a~DvGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 111 EQNAAFAMQFLRDEGIPVVGSSTGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCeEE
Confidence 3489999999999999997543 3356666655556554
No 251
>PRK10314 putative acyltransferase; Provisional
Probab=26.35 E-value=84 Score=20.25 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=13.8
Q ss_pred HHHHHHHhhhcCCeeccc
Q 032174 37 ERSLEFYQNILGLEINEA 54 (146)
Q Consensus 37 ~~~~~FY~~~lg~~~~~~ 54 (146)
..+..||++ +||+...+
T Consensus 118 ~~a~~fY~k-~GF~~~g~ 134 (153)
T PRK10314 118 AHLQNFYQS-FGFIPVTE 134 (153)
T ss_pred HHHHHHHHH-CCCEECCC
Confidence 567789988 99998764
No 252
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=26.26 E-value=88 Score=19.77 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=20.4
Q ss_pred cEEEEEeCCHHHHHHHHHHCCCeEe
Q 032174 96 RHTCIAIRDVSKLKMILDKAGISYT 120 (146)
Q Consensus 96 ~hl~~~v~d~~~~~~~l~~~G~~~~ 120 (146)
.|+-.+-.|++.+++.|++.|.++.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 4676677799999999999997753
No 253
>PRK03094 hypothetical protein; Provisional
Probab=26.21 E-value=1.4e+02 Score=17.33 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=28.7
Q ss_pred EEeC-CHHHHHHHHHHCCCeEeccC-----CCceEEEEECCCCCeEE
Q 032174 100 IAIR-DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALE 140 (146)
Q Consensus 100 ~~v~-d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie 140 (146)
+.|+ ++..+.+.|+++|+++..-. .+...+.+..-|.|...
T Consensus 4 IaVE~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mg 50 (80)
T PRK03094 4 IGVEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMG 50 (80)
T ss_pred EEeecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceec
Confidence 3444 78889999999999996432 34566667766666554
No 254
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=26.13 E-value=1.3e+02 Score=22.35 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=42.7
Q ss_pred EEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCCHHHH
Q 032174 29 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 108 (146)
Q Consensus 29 v~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d~~~~ 108 (146)
+++.+-|+-++..|+.++++........ +. +-.|...+.++..-....+. +.+.-+.++++
T Consensus 171 fGVTtLDvVRA~tFv~~~~~~~p~~~v~-----VP---VIGGHaG~TIlPLlSQ~~p~-----------~~~~~~~~~~L 231 (345)
T KOG1494|consen 171 FGVTTLDVVRANTFVAEVLNLDPAEDVD-----VP---VIGGHAGITIIPLLSQCKPP-----------FRFTDDEIEAL 231 (345)
T ss_pred eceehhhhhhHHHHHHHHhCCCchhcCC-----cc---eecCcCCceEeeecccCCCc-----------ccCCHHHHHHH
Confidence 4455668889999999999998633211 11 11233333333332222111 22333367788
Q ss_pred HHHHHHCCCeEecc
Q 032174 109 KMILDKAGISYTLS 122 (146)
Q Consensus 109 ~~~l~~~G~~~~~~ 122 (146)
..|...-|-+++..
T Consensus 232 t~RiQ~gGtEVV~A 245 (345)
T KOG1494|consen 232 THRIQNGGTEVVKA 245 (345)
T ss_pred HHHHHhCCceEEEe
Confidence 88888888887653
No 255
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=26.06 E-value=75 Score=23.30 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=32.2
Q ss_pred EEEEeC-CHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCeEEEEee
Q 032174 98 TCIAIR-DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 98 l~~~v~-d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ie~~~~ 144 (146)
|+.+++ .+..+.+-|++..-.+...+ ...++..+..++|..+||...
T Consensus 161 iS~evdDsl~~il~lLr~~D~sFrpvPh~~d~ak~~~fqn~~~y~VefLTt 211 (349)
T COG5397 161 ISREVDDSLPPILDLLRSVDPSFRPVPHRSDPAKSSAFQNRDGYRVEFLTT 211 (349)
T ss_pred hhHHhcccccHHHHHHhccCcccccCCccCCCccceeeecCCCeEEEEecc
Confidence 445555 57777777776666554332 345666669999999999864
No 256
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=25.94 E-value=68 Score=18.99 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=9.9
Q ss_pred ceEEEEECCCCCeEE
Q 032174 126 RPAIFTRDPDANALE 140 (146)
Q Consensus 126 ~~~~~~~DpdG~~ie 140 (146)
.+.||++|.+|..+.
T Consensus 43 ~Yrf~WyD~~G~~v~ 57 (94)
T PF07233_consen 43 QYRFYWYDKQGLEVD 57 (94)
T ss_dssp EEEEEEE-TTS-EE-
T ss_pred EEEEEEECCCCCCcC
Confidence 577899999998764
No 257
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=25.92 E-value=83 Score=20.96 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=19.0
Q ss_pred eeeeEEEEeC-CHHHHHHHHhhhcCCeecc
Q 032174 25 SVHHVGILCE-NLERSLEFYQNILGLEINE 53 (146)
Q Consensus 25 ~l~hv~l~v~-d~~~~~~FY~~~lg~~~~~ 53 (146)
++..+.+.|. +=..+.+||++ +||+...
T Consensus 156 g~~~I~l~v~~~N~~A~~~Y~k-lGF~~~~ 184 (191)
T TIGR02382 156 GLTRLRVATQMGNTAALRLYIR-SGANIES 184 (191)
T ss_pred CCCEEEEEeCCCCHHHHHHHHH-cCCcccc
Confidence 4555666652 22689999987 8998654
No 258
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=25.83 E-value=69 Score=14.27 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=11.6
Q ss_pred eCCHHHHHHHHhhh
Q 032174 33 CENLERSLEFYQNI 46 (146)
Q Consensus 33 v~d~~~~~~FY~~~ 46 (146)
-.|.+++..||++.
T Consensus 18 ~~d~~~A~~~~~~A 31 (36)
T smart00671 18 KKDLEKALEYYKKA 31 (36)
T ss_pred CcCHHHHHHHHHHH
Confidence 36999999999875
No 259
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=25.68 E-value=78 Score=19.84 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=23.7
Q ss_pred HHHHHHHCCCeEeccC---CCceEEEEECCCCCeEEEEe
Q 032174 108 LKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 108 ~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ie~~~ 143 (146)
....|.++.+...-.+ .|+..+.++.|||.++.|.-
T Consensus 48 ~a~~lDA~dit~Pyt~GALRGGtHvHvfSpDG~~lSFTY 86 (122)
T PF12566_consen 48 VAINLDAMDITPPYTPGALRGGTHVHVFSPDGSWLSFTY 86 (122)
T ss_pred ceeecchhcccCCCCCccccCCccceEECCCCCEEEEEe
Confidence 3344555555532221 47888999999999998853
No 260
>PF07566 DUF1543: Domain of Unknown Function (DUF1543); InterPro: IPR011440 This domain is found as 1-2 copies in a small family of proteins of unknown function.; PDB: 2QSD_F.
Probab=25.61 E-value=59 Score=17.01 Aligned_cols=22 Identities=5% Similarity=0.034 Sum_probs=16.7
Q ss_pred cEEEEEeC-CHHHHHHHHHHCCC
Q 032174 96 RHTCIAIR-DVSKLKMILDKAGI 117 (146)
Q Consensus 96 ~hl~~~v~-d~~~~~~~l~~~G~ 117 (146)
+.+.|.|. +.+++..++++.-.
T Consensus 6 Hd~~fvVa~s~~ea~~~~k~~W~ 28 (52)
T PF07566_consen 6 HDVRFVVAESIEEAKPKAKQRWF 28 (52)
T ss_dssp ECEEEEEESSCHHHHHHHHCC-S
T ss_pred eeeEEEEECCHHHHHHHHHHhhh
Confidence 56777775 89999999988754
No 261
>PF10922 DUF2745: Protein of unknown function (DUF2745); InterPro: IPR020147 The T7-like bacteriophage gene 1.2 protein is an inhibitor of the Escherichia coli dGTP triphosphohydrolase (dGTPase) and is implicated in DNA replication.
Probab=25.46 E-value=1.5e+02 Score=17.37 Aligned_cols=36 Identities=8% Similarity=-0.020 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHCCCeEeccC-------CCceEEEEECCCCCeE
Q 032174 104 DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANAL 139 (146)
Q Consensus 104 d~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DpdG~~i 139 (146)
++.++.+||.++.+.+.... .......+.|-.||++
T Consensus 11 afKaA~~Rl~~lD~~V~~e~~~~~~~~~~~~~Lrv~dr~G~~v 53 (85)
T PF10922_consen 11 AFKAATDRLYELDFAVISEEFYYSNPAKMCMVLRVEDRSGNSV 53 (85)
T ss_pred HHHHHHHHHhhCcEEEEEEeeccccchhhEEEEEEEecCCCEe
Confidence 56677899999888765432 1245578899999998
No 262
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=25.43 E-value=1.7e+02 Score=20.29 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCeE
Q 032174 103 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANAL 139 (146)
Q Consensus 103 ~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~i 139 (146)
.|++.+.+.|++.|+++.... ..++.++|.--+|..+
T Consensus 115 rNie~a~~~L~~~GI~ivaeDvGG~~gRkI~f~~~tG~v~ 154 (199)
T PRK13491 115 ANAAFARRYLRDEGIRCTAHSLGGNRARRIRFWPKTGRVQ 154 (199)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 489999999999999987543 3356666655555544
No 263
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=25.21 E-value=1.6e+02 Score=19.48 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=17.5
Q ss_pred EEEEeCCHHHHHHHHHHCCCeE
Q 032174 98 TCIAIRDVSKLKMILDKAGISY 119 (146)
Q Consensus 98 l~~~v~d~~~~~~~l~~~G~~~ 119 (146)
+=+.+.|.+++..+|.+.|...
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~ 27 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKF 27 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCccc
Confidence 3466779999999999998654
No 264
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=24.66 E-value=1.2e+02 Score=18.61 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.9
Q ss_pred eeEEEEeCCHHHHHHHHhhhc
Q 032174 27 HHVGILCENLERSLEFYQNIL 47 (146)
Q Consensus 27 ~hv~l~v~d~~~~~~FY~~~l 47 (146)
+.++|.-.|.++|.+||.++.
T Consensus 82 c~~GL~Fade~EA~~F~k~v~ 102 (105)
T cd01205 82 CVVGLNFADETEAAEFRKKVL 102 (105)
T ss_pred cEEEEEECCHHHHHHHHHHHH
Confidence 458888899999999998864
No 265
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=24.63 E-value=1.1e+02 Score=20.44 Aligned_cols=29 Identities=14% Similarity=0.277 Sum_probs=20.1
Q ss_pred eeeeEEEEeC-CHHHHHHHHhhhcCCeeccc
Q 032174 25 SVHHVGILCE-NLERSLEFYQNILGLEINEA 54 (146)
Q Consensus 25 ~l~hv~l~v~-d~~~~~~FY~~~lg~~~~~~ 54 (146)
++..+.+.|. +=.++.+||++ +||+....
T Consensus 159 g~~~i~l~v~~~N~~a~~~yek-~Gf~~~~~ 188 (194)
T PRK10975 159 GLTRLRVATQMGNLAALRLYIR-SGANIEST 188 (194)
T ss_pred CCCEEEEEeCCCcHHHHHHHHH-CCCeEeEE
Confidence 4556666653 33678999976 99987653
No 266
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=24.58 E-value=1.7e+02 Score=20.49 Aligned_cols=36 Identities=6% Similarity=0.077 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCe
Q 032174 103 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 138 (146)
Q Consensus 103 ~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ 138 (146)
.|++.+.+.|.+.|+++.... ..++.++|..-+|..
T Consensus 139 rNi~~a~~~L~~~gI~Iva~DvGG~~gRki~f~~~tG~v 177 (213)
T PRK13493 139 KNVEFVLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQA 177 (213)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 489999999999999997543 235556554444543
No 267
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=24.54 E-value=2.2e+02 Score=18.93 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=23.1
Q ss_pred CccEEEEEeC--CHHHHHHHHHHCCCeEe
Q 032174 94 RDRHTCIAIR--DVSKLKMILDKAGISYT 120 (146)
Q Consensus 94 ~~~hl~~~v~--d~~~~~~~l~~~G~~~~ 120 (146)
...++++... |+..++.+|++.|.++.
T Consensus 105 ~iD~~vLvSgD~DF~~Lv~~lre~G~~V~ 133 (160)
T TIGR00288 105 NIDAVALVTRDADFLPVINKAKENGKETI 133 (160)
T ss_pred CCCEEEEEeccHhHHHHHHHHHHCCCEEE
Confidence 3578888886 89999999999999974
No 268
>KOG2465 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.41 E-value=71 Score=23.69 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=16.8
Q ss_pred CccEEEEEeCCHHHHHHHHHH
Q 032174 94 RDRHTCIAIRDVSKLKMILDK 114 (146)
Q Consensus 94 ~~~hl~~~v~d~~~~~~~l~~ 114 (146)
.+.||||.|||+|+....+.-
T Consensus 168 tYP~icFavD~FdevF~dvvv 188 (390)
T KOG2465|consen 168 TYPEICFAVDDFDEVFDDVVV 188 (390)
T ss_pred ccceEEEEecCHHHhhhhhEE
Confidence 346999999999999776543
No 269
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=24.37 E-value=1.6e+02 Score=17.13 Aligned_cols=41 Identities=24% Similarity=0.295 Sum_probs=28.7
Q ss_pred EEeC-CHHHHHHHHHHCCCeEeccC-----CCceEEEEECCCCCeEE
Q 032174 100 IAIR-DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALE 140 (146)
Q Consensus 100 ~~v~-d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie 140 (146)
+.|+ ++..+.+.|+++|+++.... .+...+.+..-+.|...
T Consensus 4 IAVE~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg 50 (80)
T PF03698_consen 4 IAVEEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMG 50 (80)
T ss_pred EEecCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCccccc
Confidence 3455 78899999999999987543 24556666666666543
No 270
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=24.03 E-value=1.4e+02 Score=16.60 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEE
Q 032174 104 DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 141 (146)
Q Consensus 104 d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~ 141 (146)
+..++...|.+.|+..+... +....++.|||.++-+
T Consensus 8 ~~ke~ik~Le~~Gf~~vrqk--GSH~q~kHp~~~~vtV 43 (66)
T COG1724 8 KAKEVIKALEKDGFQLVRQK--GSHRQYKHPDGGRVTV 43 (66)
T ss_pred CHHHHHHHHHhCCcEEEEee--cceeEEEcCCCCEEEe
Confidence 34566777888898877654 4556677888887755
No 271
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.86 E-value=1.8e+02 Score=20.13 Aligned_cols=38 Identities=8% Similarity=0.049 Sum_probs=26.5
Q ss_pred EeCCHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCe
Q 032174 101 AIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 138 (146)
Q Consensus 101 ~v~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ 138 (146)
--.|++.+.+.|.+.|+++.... ..++.++|.--+|..
T Consensus 125 G~rNi~~a~~~L~~~gI~iva~DvGG~~gR~v~f~~~tG~v 165 (201)
T PRK13487 125 GERNAEFVRDYLQTERIPIVAEDLLDIYPRKVYFFPTTGKV 165 (201)
T ss_pred hHHHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence 33489999999999999997543 335666664444544
No 272
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=23.74 E-value=59 Score=19.44 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=12.9
Q ss_pred ceEEEEECCCCCeEEE
Q 032174 126 RPAIFTRDPDANALEF 141 (146)
Q Consensus 126 ~~~~~~~DpdG~~ie~ 141 (146)
.+.||++|.+|..++-
T Consensus 51 ~Yrf~WyD~~G~~v~~ 66 (101)
T cd09030 51 QYRFYWYDAQGLEVEP 66 (101)
T ss_pred EEEEEEECCCCCCcCC
Confidence 5779999999987753
No 273
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=23.58 E-value=1.5e+02 Score=17.48 Aligned_cols=40 Identities=25% Similarity=0.474 Sum_probs=21.0
Q ss_pred cEEEEEeCCH---HHHHHHHHHCCCeEec-cCCCceEEEEECCC
Q 032174 96 RHTCIAIRDV---SKLKMILDKAGISYTL-SKSGRPAIFTRDPD 135 (146)
Q Consensus 96 ~hl~~~v~d~---~~~~~~l~~~G~~~~~-~~~g~~~~~~~Dpd 135 (146)
.|+-|.+++. +.+.+.|.+.|+.... .+.+.+.+|++|.+
T Consensus 22 YhLEi~~~~~e~a~~l~~lL~~~~i~~k~~~r~~~~~vYlK~~e 65 (93)
T PF14527_consen 22 YHLEIRFNDEEFAEQLKELLNKFGINAKIIKRKNKYVVYLKDSE 65 (93)
T ss_dssp --EEEEES-HHHHHHHHHHHHHH----EEEEESSEEEEEE--HH
T ss_pred eEEEEecCCHHHHHHHHHHHHHcCCCceeeeecCceEEEEcCHH
Confidence 7999999853 3445666677887654 34567888998754
No 274
>PRK09732 hypothetical protein; Provisional
Probab=23.27 E-value=2.1e+02 Score=18.30 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=21.3
Q ss_pred HHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEEEeec
Q 032174 105 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 105 ~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
+++..++.+++|+. -.+.+.|..||.+-|.-+|
T Consensus 16 ~~aA~~~A~~~g~~--------v~iaVvD~~G~l~a~~RmD 48 (134)
T PRK09732 16 IAAGQEEAQKNNWS--------VSIAVADDGGHLLALSRMD 48 (134)
T ss_pred HHHHHHHHHHhCCC--------EEEEEEcCCCCEEEEEEcC
Confidence 34456666677763 3466778888877776654
No 275
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=23.24 E-value=45 Score=17.41 Aligned_cols=14 Identities=21% Similarity=0.686 Sum_probs=11.6
Q ss_pred CHHHHHHHHhhhcC
Q 032174 35 NLERSLEFYQNILG 48 (146)
Q Consensus 35 d~~~~~~FY~~~lg 48 (146)
++++..+||.+.|-
T Consensus 24 ~v~~~~dWYk~Mfk 37 (50)
T smart00459 24 SVERPKDWYRTMFK 37 (50)
T ss_pred CcccHHHHHHHHHH
Confidence 77888899999863
No 276
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=23.19 E-value=1.9e+02 Score=17.63 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHCCCeEe--ccC----------CCceEEEEECCCCCeEEEEe
Q 032174 104 DVSKLKMILDKAGISYT--LSK----------SGRPAIFTRDPDANALEFTQ 143 (146)
Q Consensus 104 d~~~~~~~l~~~G~~~~--~~~----------~g~~~~~~~DpdG~~ie~~~ 143 (146)
+.+++.+.++++++.+. ..+ .+....++.|++|.++....
T Consensus 72 ~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 72 DLANVKSAVLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred CHHHHHHHHHHcCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence 45666666777776532 111 24577899999999887654
No 277
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=22.88 E-value=1.4e+02 Score=20.56 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHCCCeEeccC-----CCceEEEEECCCCCeEEEE
Q 032174 104 DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFT 142 (146)
Q Consensus 104 d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DpdG~~ie~~ 142 (146)
|++.+.++|+++|+...... ..+......+|+|+.--++
T Consensus 32 d~~~A~~~lr~~g~~~a~kk~~r~~~eG~i~~~i~~~~~~~~lv 75 (198)
T PRK12332 32 DMEKAIEWLREKGLAKAAKKAGRVAAEGLVGSYIHTGGRIGVLV 75 (198)
T ss_pred CHHHHHHHHHHhhhhHHHHhccccccCceEEEEEecCCCEEEEE
Confidence 99999999999998764322 2344455556666655444
No 278
>PRK10514 putative acetyltransferase; Provisional
Probab=22.77 E-value=1.7e+02 Score=17.99 Aligned_cols=20 Identities=20% Similarity=0.590 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhcCCeeccccC
Q 032174 36 LERSLEFYQNILGLEINEARP 56 (146)
Q Consensus 36 ~~~~~~FY~~~lg~~~~~~~~ 56 (146)
=.++++||++ +||+......
T Consensus 109 N~~a~~~yek-~Gf~~~~~~~ 128 (145)
T PRK10514 109 NEQAVGFYKK-MGFKVTGRSE 128 (145)
T ss_pred CHHHHHHHHH-CCCEEecccc
Confidence 3589999977 9999876544
No 279
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=22.75 E-value=2.3e+02 Score=19.16 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=33.1
Q ss_pred eCCHHHHHHHHHHCCCeEeccCCCceEEEEECCCCCeEEEE
Q 032174 102 IRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 142 (146)
Q Consensus 102 v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DpdG~~ie~~ 142 (146)
...+.....+|.+.|+-.....+.++.+-.+|++|.+.+-+
T Consensus 85 ~~tlrR~l~~LveaGLI~rrDS~NgkRy~~R~~~G~I~~A~ 125 (177)
T PF03428_consen 85 ERTLRRHLARLVEAGLIVRRDSPNGKRYARRDRGGRIVEAF 125 (177)
T ss_pred HHHHHHHHHHHHHCCCeeeccCCCCCccCccCCCCCEEeEe
Confidence 34677788999999998887777788888889999887654
No 280
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.74 E-value=1.3e+02 Score=15.68 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=17.3
Q ss_pred cEEEEEeCC---HHHHHHHHHHCCCeEe
Q 032174 96 RHTCIAIRD---VSKLKMILDKAGISYT 120 (146)
Q Consensus 96 ~hl~~~v~d---~~~~~~~l~~~G~~~~ 120 (146)
.++.+.+.+ ++++.+.|++.|+++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 345555554 4588999999998763
No 281
>PF01483 P_proprotein: Proprotein convertase P-domain; InterPro: IPR002884 This domain, termed the P domain is approximately 150 amino acids in length and C-terminal to a serine endopeptidase domain which belong to MEROPS peptidase family S8 (clan SB), subfamily S8B (kexin). The domain is primarily associated with the calcium-dependent serine endopeptidases, kex2/subtilisin proprotein convertases (PCs), which have been identified in all eukaryotes [] and in the gammaproteobacteria, Nostoc (cyanobacteria) and in Streptomyces avermitilis. The P domain appears necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence. In addition, contained within the middle of the P domain in most PC family members is the cognate integrin binding RGD sequence [], which may be required for intracellular compartmentalization and maintenance of enzyme stability within the ER. The integrity of the RGD sequence of proprotein convertase PC1 is critical for its zymogen and C-terminal processing and for its cellular trafficking [, ]. The carboxy-terminal tail provides uniqueness to each PC family member being the least conserved region of all convertases [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1P8J_E 1OT5_B 2ID4_A 1R64_A 3HJR_A.
Probab=22.61 E-value=1.5e+02 Score=16.95 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=14.9
Q ss_pred ccCCCceEEEEECCCCCeEEEEeec
Q 032174 121 LSKSGRPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 121 ~~~~g~~~~~~~DpdG~~ie~~~~~ 145 (146)
++..+.-.+.+..|+|..+.+....
T Consensus 12 H~~~gdL~i~L~SP~Gt~~~L~~~~ 36 (87)
T PF01483_consen 12 HPYRGDLRITLISPSGTRSTLKDRR 36 (87)
T ss_dssp ESSGGGEEEEEE-TT--EEEEE-SS
T ss_pred cCCcCCEEEEEECCCCCEEEEECCc
Confidence 3444667788888999888887653
No 282
>PF08379 Bact_transglu_N: Bacterial transglutaminase-like N-terminal region; InterPro: IPR013589 This region is found towards the N terminus of various archaeal and bacterial hypothetical proteins. Some of these are annotated as being transglutaminase-like proteins, and in fact contain a transglutaminase-like superfamily domain (IPR002931 from INTERPRO).
Probab=22.51 E-value=1.6e+02 Score=16.60 Aligned_cols=20 Identities=10% Similarity=-0.218 Sum_probs=15.5
Q ss_pred ceEEEEECCCCCeEEEEeec
Q 032174 126 RPAIFTRDPDANALEFTQVD 145 (146)
Q Consensus 126 ~~~~~~~DpdG~~ie~~~~~ 145 (146)
.......|..||.+..+..+
T Consensus 47 ~~~~~~~D~fGN~v~~~~~~ 66 (82)
T PF08379_consen 47 ARVREYTDFFGNRVHRFSFP 66 (82)
T ss_pred CEEEEEECCCCCEEEEEEEC
Confidence 46677899999999877654
No 283
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=22.06 E-value=59 Score=17.48 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=13.1
Q ss_pred CCHHHHHHHHhhhcCCe
Q 032174 34 ENLERSLEFYQNILGLE 50 (146)
Q Consensus 34 ~d~~~~~~FY~~~lg~~ 50 (146)
.-++..++||++.|-|.
T Consensus 41 k~Pq~vI~FYE~~l~f~ 57 (58)
T PF01393_consen 41 KCPQKVIKFYESHLVFK 57 (58)
T ss_dssp HSHHHHHHHHHHTCEEE
T ss_pred HCcHHHHHHHHHHeeec
Confidence 46788999999987553
No 284
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.92 E-value=2.6e+02 Score=18.74 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=27.4
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCe
Q 032174 100 IAIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 138 (146)
Q Consensus 100 ~~v~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ 138 (146)
+--.|.+.+.+.|++.|+++.... ..++.++|.--+|-.
T Consensus 111 IG~rNv~~~~~~L~~~~IpilaeD~Gg~~gR~i~F~p~tG~v 152 (164)
T COG1871 111 IGERNVEFAKEFLKDEGIPILAEDTGGDSGRTIEFNPSTGRV 152 (164)
T ss_pred hhhHHHHHHHHHHHHcCCcEEEhhhCCCCCcEEEEecCCCcE
Confidence 333488999999999999997544 345667765555544
No 285
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=21.75 E-value=2.7e+02 Score=18.93 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=48.4
Q ss_pred eeeEEEEeCCHHHHHHHHhhhcCCeeccccCCCCCCceEEEEEeCCeEEEEEeeCCCCCCCCCCCCCCCccEEEEEeCCH
Q 032174 26 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 105 (146)
Q Consensus 26 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d~ 105 (146)
..-+.+.+.|...+.+-... |||.....-. ..+.. ...++..++|-...+-+. ...+...++|-
T Consensus 78 r~E~E~~v~D~~~~~~il~~-LGF~~~~~Vk----K~R~i-Y~~~~~~i~lD~VegLG~----------F~EIE~~~~d~ 141 (178)
T COG1437 78 REEIEIEVSDVEKALEILKR-LGFKEVAVVK----KTREI-YKVGNVTIELDAVEGLGD----------FLEIEVMVDDE 141 (178)
T ss_pred eeeEEEEeCCHHHHHHHHHH-cCCceeeEEE----EEEEE-EeeCCEEEEEecccCCcc----------cEEEEEecCCc
Confidence 44577889999999999966 9998765322 11222 334666666655444321 33455555544
Q ss_pred HH-------HHHHHHHCCCeE
Q 032174 106 SK-------LKMILDKAGISY 119 (146)
Q Consensus 106 ~~-------~~~~l~~~G~~~ 119 (146)
++ +.+.+++.|+..
T Consensus 142 ~e~~~~~~~~~~i~~~lGl~~ 162 (178)
T COG1437 142 NEIDGAKEEIEEIARQLGLKE 162 (178)
T ss_pred hhhHHHHHHHHHHHHHhCCCh
Confidence 33 677888889853
No 286
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=21.51 E-value=1.5e+02 Score=21.93 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHCCCeEe
Q 032174 104 DVSKLKMILDKAGISYT 120 (146)
Q Consensus 104 d~~~~~~~l~~~G~~~~ 120 (146)
+++++.+++++.|+..+
T Consensus 18 nl~~l~~ri~~~~~~tV 34 (294)
T PF14883_consen 18 NLDKLIQRIKDMGINTV 34 (294)
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 79999999999998653
No 287
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=21.30 E-value=89 Score=20.72 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=14.5
Q ss_pred ceEEEEECCCCCeEEEEee
Q 032174 126 RPAIFTRDPDANALEFTQV 144 (146)
Q Consensus 126 ~~~~~~~DpdG~~ie~~~~ 144 (146)
...+|+.||+|.+...+..
T Consensus 155 s~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 155 SAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp SSEEEEE-TTSEEEEEECS
T ss_pred ccEEEEEcCCCcEEEEEcc
Confidence 4568999999999988754
No 288
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=21.06 E-value=1.5e+02 Score=18.43 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=20.1
Q ss_pred eeeeEEEEe-CCHHHHHHHHhhhcCCeeccc
Q 032174 25 SVHHVGILC-ENLERSLEFYQNILGLEINEA 54 (146)
Q Consensus 25 ~l~hv~l~v-~d~~~~~~FY~~~lg~~~~~~ 54 (146)
++.++.+.| .+-.++.+||++ +||+....
T Consensus 96 ~~~~~~~~~~~~N~~a~~~y~k-~Gf~~~~~ 125 (146)
T PRK09491 96 GVATLWLEVRASNAAAIALYES-LGFNEVTI 125 (146)
T ss_pred CCcEEEEEEccCCHHHHHHHHH-cCCEEeee
Confidence 455555555 344789999988 99987653
No 289
>PHA01735 hypothetical protein
Probab=20.83 E-value=86 Score=17.65 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHCCCeEe
Q 032174 103 RDVSKLKMILDKAGISYT 120 (146)
Q Consensus 103 ~d~~~~~~~l~~~G~~~~ 120 (146)
.|+.+..++|+++++.-+
T Consensus 33 aDL~AA~d~Lk~NdItgv 50 (76)
T PHA01735 33 ADLRAACDWLKSNDITGV 50 (76)
T ss_pred HHHHHHHHHHHHCCCcee
Confidence 389999999999998754
No 290
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.66 E-value=2.3e+02 Score=20.19 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=25.9
Q ss_pred eCCHHHHHHHHHHCCCeEeccC---CCceEEEEECCCCCe
Q 032174 102 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 138 (146)
Q Consensus 102 v~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DpdG~~ 138 (146)
-.|++.+.+.|.+.|+++.... ..++.++|.--+|..
T Consensus 124 ~RNieaa~~~L~~~gI~IvaeDvGG~~gRkV~f~~~TG~v 163 (233)
T PRK13489 124 DRNADFVRRYLALERIRITAEDLQGVHPRKVAFMPRTGRA 163 (233)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 3489999999999999997543 335566664444544
No 291
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=20.48 E-value=2.8e+02 Score=18.69 Aligned_cols=50 Identities=16% Similarity=0.053 Sum_probs=31.4
Q ss_pred ccEEEEEeCCHHHHHHHHHH----CCCe--EeccC--------------CCc--eEEEEECCCCCeEEEEee
Q 032174 95 DRHTCIAIRDVSKLKMILDK----AGIS--YTLSK--------------SGR--PAIFTRDPDANALEFTQV 144 (146)
Q Consensus 95 ~~hl~~~v~d~~~~~~~l~~----~G~~--~~~~~--------------~g~--~~~~~~DpdG~~ie~~~~ 144 (146)
..-+++.+|+..+..++.+. .++. +...+ .+. +..|+.||+|.+......
T Consensus 66 ~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~ 137 (187)
T PRK10382 66 VDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVT 137 (187)
T ss_pred CEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEe
Confidence 45688888877765555543 2443 22111 122 788999999998877544
No 292
>PRK09831 putative acyltransferase; Provisional
Probab=20.35 E-value=1e+02 Score=19.32 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=15.4
Q ss_pred HHHHHHHhhhcCCeeccccC
Q 032174 37 ERSLEFYQNILGLEINEARP 56 (146)
Q Consensus 37 ~~~~~FY~~~lg~~~~~~~~ 56 (146)
..+..||++ +||.......
T Consensus 110 ~~a~~~Y~k-~Gf~~~g~~~ 128 (147)
T PRK09831 110 ITAKPFFER-YGFQTVKQQR 128 (147)
T ss_pred hhhHHHHHH-CCCEEeeccc
Confidence 578999988 9999887643
No 293
>PRK10562 putative acetyltransferase; Provisional
Probab=20.15 E-value=2.3e+02 Score=17.56 Aligned_cols=26 Identities=19% Similarity=0.514 Sum_probs=18.0
Q ss_pred EEEEe-CCHHHHHHHHhhhcCCeecccc
Q 032174 29 VGILC-ENLERSLEFYQNILGLEINEAR 55 (146)
Q Consensus 29 v~l~v-~d~~~~~~FY~~~lg~~~~~~~ 55 (146)
+.+.| .+=..+.+||++ +||+.....
T Consensus 100 ~~~~v~~~N~~s~~~y~k-~Gf~~~~~~ 126 (145)
T PRK10562 100 LSLEVYQKNQRAVNFYHA-QGFRIVDSA 126 (145)
T ss_pred EEEEEEcCChHHHHHHHH-CCCEEcccc
Confidence 33444 344679999988 999987643
No 294
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=20.06 E-value=2.6e+02 Score=19.91 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHCCCeEecc---C----------CCceEEEEECCCCCeE
Q 032174 103 RDVSKLKMILDKAGISYTLS---K----------SGRPAIFTRDPDANAL 139 (146)
Q Consensus 103 ~d~~~~~~~l~~~G~~~~~~---~----------~g~~~~~~~DpdG~~i 139 (146)
++.-+.+++|.+.|+++... + .+...+++.+|||..+
T Consensus 21 ~~~p~~~~~l~~~g~~v~~~~~~p~~l~g~~~~~~~~~~i~Y~t~dg~y~ 70 (251)
T PRK11657 21 EELPAPVKALEKQGITIIKTFDAPGGLKGYAAKYQDMGVTIYLTPDGKHA 70 (251)
T ss_pred hcccHHHHHHHhCCCEEEEeecCCCCceEEEEEeCCCceEEEEcCCCCEE
Confidence 57788889999999998543 2 2344466778998654
Done!