Query 032176
Match_columns 146
No_of_seqs 125 out of 1146
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 10:37:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 4.2E-48 9.1E-53 279.9 11.7 127 14-146 6-132 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 2.5E-47 5.5E-52 270.9 9.8 125 15-146 3-127 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 3.1E-45 6.6E-50 254.4 9.6 129 11-146 2-130 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 2.4E-43 5.2E-48 256.6 12.2 126 14-146 3-128 (152)
5 PLN00172 ubiquitin conjugating 100.0 5.3E-43 1.1E-47 253.6 11.9 125 15-146 3-127 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 2E-42 4.3E-47 246.7 9.7 128 15-146 7-145 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 8.4E-40 1.8E-44 230.2 10.5 131 15-146 6-137 (158)
8 KOG0426 Ubiquitin-protein liga 100.0 4.4E-40 9.6E-45 228.9 8.9 129 13-145 4-143 (165)
9 PF00179 UQ_con: Ubiquitin-con 100.0 6.7E-40 1.4E-44 235.2 8.1 125 17-146 1-125 (140)
10 KOG0421 Ubiquitin-protein liga 100.0 3.6E-39 7.7E-44 227.2 7.5 125 14-145 30-154 (175)
11 KOG0418 Ubiquitin-protein liga 100.0 4.3E-39 9.4E-44 235.7 7.8 126 14-145 4-132 (200)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 3.2E-38 7E-43 226.8 11.0 125 16-146 2-126 (141)
13 smart00212 UBCc Ubiquitin-conj 100.0 3.7E-37 8E-42 222.2 11.1 126 16-146 1-126 (145)
14 KOG0422 Ubiquitin-protein liga 100.0 1.1E-35 2.4E-40 208.4 8.7 126 15-146 4-129 (153)
15 KOG0420 Ubiquitin-protein liga 100.0 5.6E-33 1.2E-37 200.9 7.7 127 12-145 27-154 (184)
16 KOG0416 Ubiquitin-protein liga 100.0 4.5E-33 9.8E-38 201.1 7.1 123 15-146 5-128 (189)
17 KOG0427 Ubiquitin conjugating 100.0 3.1E-29 6.6E-34 174.5 12.7 112 13-132 15-127 (161)
18 KOG0423 Ubiquitin-protein liga 100.0 3.5E-31 7.7E-36 192.0 2.7 125 14-145 11-135 (223)
19 KOG0894 Ubiquitin-protein liga 100.0 1.2E-27 2.5E-32 178.9 12.6 112 14-133 6-119 (244)
20 KOG0428 Non-canonical ubiquiti 99.9 7.9E-24 1.7E-28 161.3 10.0 117 5-130 3-121 (314)
21 KOG0896 Ubiquitin-conjugating 99.9 3E-23 6.4E-28 145.0 9.2 137 10-146 2-138 (138)
22 KOG0429 Ubiquitin-conjugating 99.8 8.9E-19 1.9E-23 131.8 8.3 126 14-146 20-150 (258)
23 KOG0895 Ubiquitin-conjugating 99.6 6.2E-16 1.3E-20 136.9 7.5 112 16-132 854-972 (1101)
24 KOG0895 Ubiquitin-conjugating 99.6 1.1E-14 2.4E-19 129.0 11.7 117 11-132 280-405 (1101)
25 KOG0897 Predicted ubiquitin-co 98.9 2.1E-09 4.6E-14 73.6 3.5 67 66-133 13-79 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.5 4.3E-07 9.3E-12 64.6 5.9 67 62-131 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.1 4.6E-06 1E-10 58.5 4.9 77 46-130 32-116 (121)
28 PF08694 UFC1: Ubiquitin-fold 97.3 0.00021 4.5E-09 51.2 3.1 96 15-122 26-135 (161)
29 KOG2391 Vacuolar sorting prote 97.2 0.0029 6.4E-08 51.3 9.1 96 31-134 37-140 (365)
30 PF14462 Prok-E2_E: Prokaryoti 95.7 0.34 7.5E-06 34.0 10.4 89 34-130 14-120 (122)
31 PF05773 RWD: RWD domain; Int 95.5 0.087 1.9E-06 35.2 6.8 68 17-89 5-74 (113)
32 PF14457 Prok-E2_A: Prokaryoti 95.4 0.17 3.8E-06 37.2 8.5 62 68-131 57-126 (162)
33 KOG3357 Uncharacterized conser 95.3 0.03 6.5E-07 39.7 3.9 96 15-122 29-138 (167)
34 smart00591 RWD domain in RING 93.5 0.31 6.8E-06 32.2 5.8 26 63-88 40-65 (107)
35 PF09765 WD-3: WD-repeat regio 85.0 2.6 5.7E-05 33.8 5.6 87 14-130 100-187 (291)
36 KOG0309 Conserved WD40 repeat- 82.2 7.2 0.00016 35.5 7.5 66 17-88 424-491 (1081)
37 smart00340 HALZ homeobox assoc 71.8 3.7 8.1E-05 23.4 1.9 16 14-29 20-35 (44)
38 PF06113 BRE: Brain and reprod 70.6 14 0.00031 30.3 5.8 59 60-127 61-122 (333)
39 cd00421 intradiol_dioxygenase 61.7 13 0.00029 26.5 3.7 25 63-87 65-90 (146)
40 PF06113 BRE: Brain and reprod 59.4 15 0.00033 30.1 4.0 28 63-91 305-332 (333)
41 cd03457 intradiol_dioxygenase_ 58.0 16 0.00035 27.4 3.7 25 63-87 86-110 (188)
42 PF14460 Prok-E2_D: Prokaryoti 57.8 24 0.00053 26.0 4.6 20 87-107 90-112 (175)
43 KOG4018 Uncharacterized conser 52.0 14 0.0003 28.4 2.5 21 65-85 50-70 (215)
44 cd03459 3,4-PCD Protocatechuat 49.7 27 0.00059 25.4 3.7 25 63-87 72-101 (158)
45 KOG0177 20S proteasome, regula 39.9 9.9 0.00021 28.7 0.1 35 98-134 135-169 (200)
46 TIGR02423 protocat_alph protoc 39.6 44 0.00096 25.2 3.6 24 63-86 96-124 (193)
47 KOG3203 Mitochondrial/chloropl 37.5 17 0.00038 26.6 1.0 14 88-103 50-63 (165)
48 KOG1047 Bifunctional leukotrie 37.2 36 0.00077 30.1 3.0 29 59-88 248-279 (613)
49 PF03366 YEATS: YEATS family; 37.1 1.2E+02 0.0025 19.7 5.0 40 47-88 2-41 (84)
50 cd03463 3,4-PCD_alpha Protocat 36.9 53 0.0011 24.6 3.6 23 64-86 93-120 (185)
51 PF08203 RNA_polI_A14: Yeast R 36.7 16 0.00035 23.5 0.7 17 9-25 55-71 (76)
52 KOG4445 Uncharacterized conser 35.3 50 0.0011 27.0 3.3 25 64-88 45-69 (368)
53 TIGR03737 PRTRC_B PRTRC system 34.7 83 0.0018 24.5 4.4 37 87-130 131-171 (228)
54 KOG0662 Cyclin-dependent kinas 32.3 54 0.0012 25.2 3.0 57 78-136 167-226 (292)
55 KOG0744 AAA+-type ATPase [Post 29.3 71 0.0015 26.7 3.4 63 47-134 174-250 (423)
56 TIGR02439 catechol_proteo cate 26.5 93 0.002 25.0 3.6 24 64-87 181-222 (285)
57 PF14135 DUF4302: Domain of un 25.7 2.6E+02 0.0057 21.4 5.9 67 15-96 11-101 (235)
58 PF00845 Gemini_BL1: Geminivir 25.4 1.6E+02 0.0035 23.3 4.6 43 48-91 104-155 (276)
59 PF09943 DUF2175: Uncharacteri 25.1 70 0.0015 21.7 2.3 19 48-68 2-20 (101)
60 PF12065 DUF3545: Protein of u 24.9 52 0.0011 20.1 1.4 14 15-28 36-49 (59)
61 cd03461 1,2-HQD Hydroxyquinol 24.5 1.1E+02 0.0023 24.6 3.6 25 63-87 172-214 (277)
62 TIGR02438 catachol_actin catec 24.1 1.1E+02 0.0024 24.5 3.6 24 63-86 184-225 (281)
63 PF13950 Epimerase_Csub: UDP-g 23.9 57 0.0012 19.8 1.5 23 111-133 37-60 (62)
64 KOG2851 Eukaryotic-type DNA pr 23.2 85 0.0018 26.3 2.8 36 93-128 331-369 (412)
65 cd03460 1,2-CTD Catechol 1,2 d 23.1 1.2E+02 0.0026 24.4 3.6 25 63-87 176-218 (282)
66 cd03464 3,4-PCD_beta Protocate 23.0 1.2E+02 0.0027 23.3 3.6 24 63-86 122-152 (220)
67 TIGR02422 protocat_beta protoc 21.8 1.3E+02 0.0029 23.1 3.6 24 63-86 117-147 (220)
68 PF04881 Adeno_GP19K: Adenovir 21.5 1.8E+02 0.0039 20.7 3.8 15 48-62 49-63 (139)
69 TIGR02465 chlorocat_1_2 chloro 20.3 1.5E+02 0.0033 23.2 3.6 24 63-86 150-191 (246)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-48 Score=279.87 Aligned_cols=127 Identities=35% Similarity=0.568 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCc
Q 032176 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (146)
Q Consensus 14 ~~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn 93 (146)
+.+||++|++++++++.++ +++.+.+++|++ +|+++|.||.+||||||+|++.|.||++||++||+|+|.++|||||
T Consensus 6 a~~RL~kE~~~l~~~~~~~-~~a~p~~d~~l~--~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPN 82 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPG-ISAGPVDDDNLF--HWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPN 82 (153)
T ss_pred HHHHHHHHHHHHhcCCCCc-eEEEECCCCcce--eEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCC
Confidence 5889999999999999777 777776655765 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 032176 94 VNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146 (146)
Q Consensus 94 i~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~~ 146 (146)
|| .+|+||+++|+ ++|+|+++|++||++|+++|.+||+++|+|.|||++|
T Consensus 83 V~-~~G~vCLdIL~--~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~ 132 (153)
T COG5078 83 VD-PSGNVCLDILK--DRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLY 132 (153)
T ss_pred cC-CCCCChhHHHh--CCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHH
Confidence 99 69999999996 9999999999999999999999999999999999865
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-47 Score=270.94 Aligned_cols=125 Identities=26% Similarity=0.524 Sum_probs=117.9
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCcc
Q 032176 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (146)
Q Consensus 15 ~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni 94 (146)
.+||.||+++++++++++ +++. ++++|++ +|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||
T Consensus 3 ~~RI~kE~~~l~~dp~~~-~~~~-~~~dnl~--~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI 78 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPG-CSAG-PVGDNLF--HWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNI 78 (148)
T ss_pred HHHHHHHHHHHhcCCCCC-CccC-CCCCcee--eEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCc
Confidence 469999999999999988 7776 5678866 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 032176 95 NHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146 (146)
Q Consensus 95 ~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~~ 146 (146)
+ +.|.||+++|. ++|+|++++.+||++|+++|.+|++++|+++++|.+|
T Consensus 79 ~-~~G~IclDILk--~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~ 127 (148)
T KOG0417|consen 79 D-SNGRICLDILK--DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELY 127 (148)
T ss_pred C-ccccchHHhhh--ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHH
Confidence 9 69999999996 8899999999999999999999999999999998765
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-45 Score=254.40 Aligned_cols=129 Identities=26% Similarity=0.516 Sum_probs=120.7
Q ss_pred cccHHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccc
Q 032176 11 VVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN 90 (146)
Q Consensus 11 ~~~~~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~ 90 (146)
..+.-|||++|++++|++++.| ++.. |.++|++ .|.+.|+||.+|||+||+|++.|.|+++||.+||.|+|++.+|
T Consensus 2 stpArrrLmrDfkrlqedpp~g-isa~-P~~~niM--~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mF 77 (152)
T KOG0419|consen 2 STPARRRLMRDFKRLQEDPPAG-ISAA-PVENNIM--EWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMF 77 (152)
T ss_pred CchHHHHHHHHHHHhhcCCCCC-ccCC-CCcccee--eeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeecc
Confidence 3466889999999999999999 5655 4678876 9999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 032176 91 MTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146 (146)
Q Consensus 91 HPni~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~~ 146 (146)
|||||. +|.+|+++|+ ..|+|.|++.+||.+||+||.+|++++|+|.|||.+|
T Consensus 78 HPNvya-~G~iClDiLq--NrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf 130 (152)
T KOG0419|consen 78 HPNVYA-DGSICLDILQ--NRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLF 130 (152)
T ss_pred CCCcCC-CCcchHHHHh--cCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence 999995 8999999996 7999999999999999999999999999999999886
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2.4e-43 Score=256.60 Aligned_cols=126 Identities=21% Similarity=0.378 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCc
Q 032176 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (146)
Q Consensus 14 ~~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn 93 (146)
..|||++|++++++++.++ +.+.+ .++|++ +|+++|.||+||||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 3 ~~kRl~~E~~~l~~~~~~~-i~~~~-~~~d~~--~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPN 78 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPG-IKAEP-DPGNYR--HFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPN 78 (152)
T ss_pred HHHHHHHHHHHHHhCCCCC-eEEEE-CCCCcc--EEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeece
Confidence 3689999999999998888 55554 567865 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 032176 94 VNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146 (146)
Q Consensus 94 i~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~~ 146 (146)
|+ .+|.||+++|+ ++|+|++|+++||++|+++|.+|++++|+|.+||.+|
T Consensus 79 V~-~~G~iCl~iL~--~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~ 128 (152)
T PTZ00390 79 ID-KLGRICLDILK--DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHF 128 (152)
T ss_pred EC-CCCeEECccCc--ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 99 59999999986 8999999999999999999999999999999999875
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=5.3e-43 Score=253.63 Aligned_cols=125 Identities=24% Similarity=0.476 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCcc
Q 032176 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (146)
Q Consensus 15 ~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni 94 (146)
.+||++|++++++++.++ +++.+ .++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 3 ~~Rl~kE~~~l~~~~~~~-~~~~~-~~~nl~--~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv 78 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSN-CSAGP-SDENLF--RWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNI 78 (147)
T ss_pred HHHHHHHHHHHHhCCCCC-eEEEE-CCCChh--eEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceE
Confidence 579999999999988777 66665 567866 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 032176 95 NHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146 (146)
Q Consensus 95 ~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~~ 146 (146)
+ .+|.||+++|. ++|+|++|+++||.+|+++|.+|++++|+|.+||++|
T Consensus 79 ~-~~G~iCl~il~--~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~ 127 (147)
T PLN00172 79 N-SNGSICLDILR--DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVF 127 (147)
T ss_pred C-CCCEEEcccCc--CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 9 49999999986 8999999999999999999999999999999999875
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-42 Score=246.66 Aligned_cols=128 Identities=27% Similarity=0.465 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCcc
Q 032176 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (146)
Q Consensus 15 ~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni 94 (146)
..-|+++|++|++++..+ +++.+.+++|++ +|.+.|+||++|.||||.|+..+.||.+||.+||+++|.+++|||||
T Consensus 7 ~~ll~~qlk~L~~~pv~g-f~~glvd~~dif--~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 7 SLLLLKQLKELQEEPVEG-FSVGLVDDSDIF--EWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred HHHHHHHHHHHhcCCCCc-cccccccCCcee--EEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 457899999999999888 788998888977 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeccCCCC-----------CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 032176 95 NHETGVVEPKKFGL-----------LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146 (146)
Q Consensus 95 ~~~~G~icl~~l~~-----------~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~~ 146 (146)
| ++|.+|+++|.. .+.|.|.+|+++||++|.+||.+||.++|+|.+||++|
T Consensus 84 y-~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~ 145 (171)
T KOG0425|consen 84 Y-EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEW 145 (171)
T ss_pred C-CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHH
Confidence 9 599999999961 35799999999999999999999999999999998764
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-40 Score=230.21 Aligned_cols=131 Identities=24% Similarity=0.366 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCC-CCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCc
Q 032176 15 NFRLLEELERGEKGIGDGTVSYGMDDGD-DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (146)
Q Consensus 15 ~kRL~~El~~l~~~~~~~~~~~~~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn 93 (146)
..||+.|-+.+.++.+.|+++....+.| .+.++.|+|.|.|++||+||||.|.+++.||++||++||+++|.+++||||
T Consensus 6 ~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPN 85 (158)
T KOG0424|consen 6 LNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPN 85 (158)
T ss_pred HHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCC
Confidence 6799999999999999997776665555 444679999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 032176 94 VNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146 (146)
Q Consensus 94 i~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~~ 146 (146)
||+ +|.||+++|+...+|+|+.||..||++||.||.+||..+|+|.||...|
T Consensus 86 Vyp-sgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~ 137 (158)
T KOG0424|consen 86 VYP-SGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIY 137 (158)
T ss_pred cCC-CCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHH
Confidence 997 9999999998445699999999999999999999999999999997654
No 8
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-40 Score=228.93 Aligned_cols=129 Identities=22% Similarity=0.374 Sum_probs=121.0
Q ss_pred cHHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccC
Q 032176 13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT 92 (146)
Q Consensus 13 ~~~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HP 92 (146)
...|||++||++|..++++| +.+.+.++||++ +|.|.|.||++|+|+||.|..++.||.|||..||+++|...+|||
T Consensus 4 ~AlkRLm~EykqLt~~~P~G-IvAgP~~EdnfF--~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEG-IVAGPINEDNFF--EWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred hHHHHHHHHHHHHccCCCCc-ceeCCCCcccee--eeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 45899999999999999999 677888999987 999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeeeccCCCC-----------CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 032176 93 CVNHETGVVEPKKFGL-----------LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTY 145 (146)
Q Consensus 93 ni~~~~G~icl~~l~~-----------~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~ 145 (146)
||++ +|+||+++|.. .+.|+|..+++.||+++.++|.+||.++.+|.+|+++
T Consensus 81 Niy~-dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~m 143 (165)
T KOG0426|consen 81 NIYP-DGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKM 143 (165)
T ss_pred cccC-CCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHH
Confidence 9995 99999999862 4689999999999999999999999999999998764
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=6.7e-40 Score=235.19 Aligned_cols=125 Identities=28% Similarity=0.536 Sum_probs=109.9
Q ss_pred HHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCcccC
Q 032176 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNH 96 (146)
Q Consensus 17 RL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~ 96 (146)
||++|++++++++..+ +.+.+.++++++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 1 Rl~~E~~~l~~~~~~~-~~~~~~~~~~~~--~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~- 76 (140)
T PF00179_consen 1 RLQKELKELQKNPPPG-ISVQPSEDDNLF--EWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID- 76 (140)
T ss_dssp HHHHHHHHHHHSHTTT-EEEEEESTTETT--EEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--
T ss_pred CHHHHHHHHhhCCCCC-EEEEECCCCChh--eEEEEEeccCccceeccccccccccccccccccccccccccccccccc-
Confidence 8999999999999888 666665544766 999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 032176 97 ETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146 (146)
Q Consensus 97 ~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~~ 146 (146)
.+|.||+++|+ .+.|+|++++.+||.+|+++|.+|+.++++|.+|+++|
T Consensus 77 ~~G~icl~~l~-~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~ 125 (140)
T PF00179_consen 77 ENGRICLDILN-PESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELY 125 (140)
T ss_dssp TTSBBGHGGGT-TTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHH
T ss_pred ccccchhhhhh-cccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHH
Confidence 69999999986 45699999999999999999999999999999998654
No 10
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-39 Score=227.23 Aligned_cols=125 Identities=28% Similarity=0.465 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCc
Q 032176 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (146)
Q Consensus 14 ~~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn 93 (146)
-.|||++||..|+....++ |++. |++||++ .|.++|.||.+|+|||-.|++.+.||.+||++||+|+|.|+.||||
T Consensus 30 V~KRLq~ELm~Lmms~~~g-ISAF-P~~dnlf--~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPN 105 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPG-ISAF-PESDNLF--KWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPN 105 (175)
T ss_pred HHHHHHHHHHHHHhcCCCC-cccC-cCcCcee--EEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCC
Confidence 3789999999999998888 6654 6778865 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 032176 94 VNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTY 145 (146)
Q Consensus 94 i~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~ 145 (146)
|| ..|.||+++|. +.|+..|++++||++||++|-+||.++|+|.-||.+
T Consensus 106 VD-~~GnIcLDILk--dKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAel 154 (175)
T KOG0421|consen 106 VD-LSGNICLDILK--DKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAEL 154 (175)
T ss_pred cc-ccccchHHHHH--HHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHH
Confidence 99 59999999985 999999999999999999999999999999998865
No 11
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-39 Score=235.70 Aligned_cols=126 Identities=23% Similarity=0.383 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhHcCC---CCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccc
Q 032176 14 RNFRLLEELERGEKGI---GDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN 90 (146)
Q Consensus 14 ~~kRL~~El~~l~~~~---~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~ 90 (146)
+.+||++|++++.+++ ..+ +.+...+ +++. +.++.|.||+|||||||.|.++|++|++|||+||+|+|.|+||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~-I~ve~vn-~~~~--~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAG-IIVEMVN-ENLK--EIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcc-eEEEEcc-CChh--hceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 5789999999999877 344 6666655 5544 9999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 032176 91 MTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTY 145 (146)
Q Consensus 91 HPni~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~ 145 (146)
||||.+.+|.||+++|. +.|++++|+.++|++||++|..|++++|...+-|++
T Consensus 80 HPnVSs~tGaICLDilk--d~Wa~slTlrtvLislQalL~~pEp~dPqDavva~q 132 (200)
T KOG0418|consen 80 HPNVSSQTGAICLDILK--DQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQ 132 (200)
T ss_pred cCCCCcccccchhhhhh--cccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHH
Confidence 99999999999999985 999999999999999999999999999977655544
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=3.2e-38 Score=226.77 Aligned_cols=125 Identities=30% Similarity=0.518 Sum_probs=115.0
Q ss_pred HHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCccc
Q 032176 16 FRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN 95 (146)
Q Consensus 16 kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~ 95 (146)
|||++|++++++++..+ +.+.+ .++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.+++|||||+
T Consensus 2 ~Rl~~E~~~l~~~~~~~-~~v~~-~~~~~~--~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~ 77 (141)
T cd00195 2 KRLQKELKDLKKDPPSG-ISAEP-VEENLL--EWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD 77 (141)
T ss_pred chHHHHHHHHHhCCCCC-eEEEE-CCCChh--EEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC
Confidence 69999999999999888 55554 556765 999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 032176 96 HETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146 (146)
Q Consensus 96 ~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~~ 146 (146)
.+|.||+++|. .+.|+|++++++||.+|+++|.+|+.++|+|.+||++|
T Consensus 78 -~~G~icl~~l~-~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~ 126 (141)
T cd00195 78 -ENGKICLSILK-THGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLY 126 (141)
T ss_pred -CCCCCchhhcC-CCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence 69999999986 33499999999999999999999999999999999765
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3.7e-37 Score=222.21 Aligned_cols=126 Identities=31% Similarity=0.504 Sum_probs=114.2
Q ss_pred HHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCccc
Q 032176 16 FRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN 95 (146)
Q Consensus 16 kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~ 95 (146)
+||++|+++++++..+++ .+....++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.+++|||||+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~-~v~~~~~~~~~--~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~ 77 (145)
T smart00212 1 KRLLKELKELLKDPPPGI-SAYPVDEDNLL--EWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD 77 (145)
T ss_pred ChHHHHHHHHHhCCCCCe-EEEECCCCChh--eEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence 599999999999998884 43332334765 999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 032176 96 HETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146 (146)
Q Consensus 96 ~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~~ 146 (146)
. +|.||++.|. .++|+|++++++||.+|+++|.+|+.++++|++|+.+|
T Consensus 78 ~-~G~icl~~l~-~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~ 126 (145)
T smart00212 78 S-SGEICLDILK-QEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLY 126 (145)
T ss_pred C-CCCEehhhcC-CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 5 9999999984 37999999999999999999999999999999998765
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=208.45 Aligned_cols=126 Identities=22% Similarity=0.331 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCcc
Q 032176 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (146)
Q Consensus 15 ~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni 94 (146)
.+||.|||.+|++++...+-. ...++++++ .|++.|. |++-||..|.|+++|.||.+|||+||++.|.|+||||||
T Consensus 4 ~~Rl~kEL~dl~~~~~~~~rn-~~~~e~nll--~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNV 79 (153)
T KOG0422|consen 4 PRRLRKELADLQKNKMKFFRN-IEVDEANLL--KWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNV 79 (153)
T ss_pred hHHHHHHHHHHHhccHHHHhh-hhcccccce--eEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCC
Confidence 579999999999988765322 234667766 9999999 899999999999999999999999999999999999999
Q ss_pred cCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 032176 95 NHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146 (146)
Q Consensus 95 ~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~~ 146 (146)
|+ .|.+|+.++. .++|+|++.+++||+.+.+++.+|++++|.+.++|.+|
T Consensus 80 De-~gqvClPiis-~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey 129 (153)
T KOG0422|consen 80 DE-KGQVCLPIIS-AENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEY 129 (153)
T ss_pred CC-CCceeeeeee-cccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHH
Confidence 95 7999999995 89999999999999999999999999999999998765
No 15
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.6e-33 Score=200.93 Aligned_cols=127 Identities=17% Similarity=0.287 Sum_probs=108.0
Q ss_pred ccHHHHHHHHHHHhHcCCCCCceEEeecC-CCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccc
Q 032176 12 VPRNFRLLEELERGEKGIGDGTVSYGMDD-GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN 90 (146)
Q Consensus 12 ~~~~kRL~~El~~l~~~~~~~~~~~~~~~-~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~ 90 (146)
..+.-||++|+.++.--+ . ++...++ .++++..+++++|. |+.+.|+||.|.|.+.+|+.||+.||+|.|.|+||
T Consensus 27 s~a~lrl~~di~elnLp~--t-~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~ 102 (184)
T KOG0420|consen 27 SAALLRLKKDILELNLPP--T-CSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY 102 (184)
T ss_pred cHHHHHHHhhhhhccCCC--c-cccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence 335667777777775422 2 4433343 35544225899999 99999999999999999999999999999999999
Q ss_pred cCcccCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 032176 91 MTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTY 145 (146)
Q Consensus 91 HPni~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~ 145 (146)
||||| .+|.||+++|+ ++|+|..++.+|+.+++.++.+|+++||+|.|||++
T Consensus 103 HPNId-~~GnVCLnILR--edW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~ 154 (184)
T KOG0420|consen 103 HPNID-LDGNVCLNILR--EDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAV 154 (184)
T ss_pred cCCcC-CcchHHHHHHH--hcCccccchHHHHHHHHHHhccCCCcccccHHHHHH
Confidence 99999 59999999997 899999999999999999999999999999999875
No 16
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.5e-33 Score=201.13 Aligned_cols=123 Identities=17% Similarity=0.330 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCcc
Q 032176 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (146)
Q Consensus 15 ~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni 94 (146)
.||+..|+.+|.... +.+...+ ++ +++++|.+.||.+||||||+++++|.+|++||++.|.|.|.++||||||
T Consensus 5 ~rRid~Dv~KL~~s~----yeV~~in-d~--m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNI 77 (189)
T KOG0416|consen 5 KRRIDTDVMKLLMSD----YEVTIIN-DG--MQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNI 77 (189)
T ss_pred ccchhhHHHHHHhcC----CeEEEec-Cc--ccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCc
Confidence 469999999998866 3444443 44 4599999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeccCCCCCCCCCCCCCHHHHHHH-HHHHhcCCCCCCCCCCCCCCCC
Q 032176 95 NHETGVVEPKKFGLLVNWQREYTMEDILTQ-LKKEMAAPHNRKLVQPPEGTYF 146 (146)
Q Consensus 95 ~~~~G~icl~~l~~~~~W~p~~~l~~il~~-i~~ll~~p~~~~~~n~~a~~~~ 146 (146)
+..+|.||++.++ +.|+|.+.+..|+.. |-.||..||+.+|+|-|||++|
T Consensus 78 De~SGsVCLDViN--QtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~ 128 (189)
T KOG0416|consen 78 DEASGSVCLDVIN--QTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALY 128 (189)
T ss_pred hhccCccHHHHHh--hhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHH
Confidence 9999999999986 999999999999964 6779999999999999999875
No 17
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-29 Score=174.50 Aligned_cols=112 Identities=17% Similarity=0.279 Sum_probs=102.1
Q ss_pred cHHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEeccc-cc
Q 032176 13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI-NM 91 (146)
Q Consensus 13 ~~~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i-~H 91 (146)
...+||+|||.++|.+++.|+ ... ..||+ .+|.+-+.|.+||.|+|..|++.++||+.||+..|+|.|..++ .|
T Consensus 15 ~at~RLqKEl~e~q~~pP~G~-~~~--v~dnl--qqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~H 89 (161)
T KOG0427|consen 15 IATNRLQKELSEWQNNPPTGF-KHR--VTDNL--QQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLH 89 (161)
T ss_pred HHHHHHHHHHHHHhcCCCCcc-eee--cccch--heeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCC
Confidence 357899999999999999994 443 35675 5999999999999999999999999999999999999999998 89
Q ss_pred CcccCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCC
Q 032176 92 TCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAP 132 (146)
Q Consensus 92 Pni~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p 132 (146)
|+|| .+|.||+++|. +.|+|++++.+|.++|.+||.+-
T Consensus 90 PHiY-SNGHICL~iL~--d~WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 90 PHIY-SNGHICLDILY--DSWSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred Ccee-cCCeEEEEeec--ccCCcchhhHHHHHHHHHHHccC
Confidence 9999 59999999985 99999999999999999999753
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.5e-31 Score=191.96 Aligned_cols=125 Identities=21% Similarity=0.351 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCc
Q 032176 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (146)
Q Consensus 14 ~~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn 93 (146)
-.|.+.+|++.+...+++| +.+. ++++|+. ...+.|.||.||||++|.|++.+.+..|||..||+-.|+|+|||||
T Consensus 11 vik~~~kEl~~l~~~PPdG-IKV~-~NeeD~t--diqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPN 86 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDG-IKVV-VNEEDFT--DIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPN 86 (223)
T ss_pred HHHHHHHHHHhcccCCCCc-eEEe-cChHHhH--HHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCC
Confidence 3788999999999999999 5554 5777765 8999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 032176 94 VNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTY 145 (146)
Q Consensus 94 i~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~ 145 (146)
|- .+|.||.+.|. .+|+|+..+..||+.|.++|-.|+|++++|.+||++
T Consensus 87 Va-aNGEICVNtLK--kDW~p~LGirHvLltikCLLI~PnPESALNEeAGkm 135 (223)
T KOG0423|consen 87 VA-ANGEICVNTLK--KDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKM 135 (223)
T ss_pred cc-cCceehhhhhh--cccCcccchhhHhhhhheeeecCChHHHHhHHHHHH
Confidence 99 69999999985 999999999999999999999999999999999875
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-27 Score=178.91 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCc
Q 032176 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (146)
Q Consensus 14 ~~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn 93 (146)
..|||+||++.|++++.++ +.+ .++++||. +||..|.||+||||+||.|+.+|.||.+||++||.|+.+|+ |
T Consensus 6 a~kRl~keY~~l~k~Pv~~-i~A-~P~p~nIL--EWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP----N 77 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPY-IVA-RPNPNNIL--EWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP----N 77 (244)
T ss_pred HHHHHHHHHHHHHhCCchh-hcc-CCCcccee--eeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC----C
Confidence 4899999999999999888 433 36889987 99999999999999999999999999999999999999995 3
Q ss_pred -ccCCCCeeeccCCCC-CCCCCCCCCHHHHHHHHHHHhcCCC
Q 032176 94 -VNHETGVVEPKKFGL-LVNWQREYTMEDILTQLKKEMAAPH 133 (146)
Q Consensus 94 -i~~~~G~icl~~l~~-~~~W~p~~~l~~il~~i~~ll~~p~ 133 (146)
-+.-+-++|+++.+. .+.|+|.|++.+||.++.++|.+-.
T Consensus 78 GRFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~ 119 (244)
T KOG0894|consen 78 GRFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDS 119 (244)
T ss_pred CceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCC
Confidence 222356899999863 3899999999999999999998643
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.9e-24 Score=161.25 Aligned_cols=117 Identities=25% Similarity=0.332 Sum_probs=100.0
Q ss_pred CCCCcccccHHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEE
Q 032176 5 SGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVR 84 (146)
Q Consensus 5 ~~~~~~~~~~~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~ 84 (146)
+...+.+.|..|||++|.++++ ++.+.+.+ .+-|||++ +|+.+|.||.||-||||+|+.+|.||.+||++||.+.
T Consensus 3 ~erYN~KnpaVkRlmkEa~El~-~Ptd~yha--~plEdNlF--EWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~i 77 (314)
T KOG0428|consen 3 EERYNLKNPAVKRLMKEAAELK-DPTDHYHA--QPLEDNLF--EWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSII 77 (314)
T ss_pred hhhhcccCHHHHHHHHHHHHhc-Cchhhhhh--ccchhcee--eEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEE
Confidence 3445678889999999999999 67776433 46789976 9999999999999999999999999999999999999
Q ss_pred EecccccCc-ccCCCCeeeccCCCC-CCCCCCCCCHHHHHHHHHHHhc
Q 032176 85 FHSRINMTC-VNHETGVVEPKKFGL-LVNWQREYTMEDILTQLKKEMA 130 (146)
Q Consensus 85 f~t~i~HPn-i~~~~G~icl~~l~~-~~~W~p~~~l~~il~~i~~ll~ 130 (146)
.+|+ | -+.-+-+||+++.+. .+.|.|+|++++.|+.|..+|-
T Consensus 78 LLTp----NGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmP 121 (314)
T KOG0428|consen 78 LLTP----NGRFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMP 121 (314)
T ss_pred EEcC----CCceeeCceEEEEecCCCccccCcchhHHHHHHHHHcccc
Confidence 9994 4 233466899999763 3899999999999999999884
No 21
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3e-23 Score=145.00 Aligned_cols=137 Identities=60% Similarity=1.061 Sum_probs=128.3
Q ss_pred ccccHHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEeccc
Q 032176 10 VVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89 (146)
Q Consensus 10 ~~~~~~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i 89 (146)
++.||+.||.+||.+-++...++.+++.+.+.+|+.+..|..+|.||+.|+||+.+|.++|.+.++||..||+|+|.+++
T Consensus 2 ~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tki 81 (138)
T KOG0896|consen 2 VKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKI 81 (138)
T ss_pred CccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEe
Confidence 57899999999999999999999999999888899899999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 032176 90 NMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146 (146)
Q Consensus 90 ~HPni~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~n~~a~~~~ 146 (146)
--+.|++.+|.+.-..++...+|+-+|+++.+|.++..+|....+...++|..+..|
T Consensus 82 nm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~~eN~kl~qp~eg~~~ 138 (138)
T KOG0896|consen 82 NMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMSKENRKLPQPPEGQCF 138 (138)
T ss_pred eecccccCCCccCccccchhhcccccchhhHHHHhhhHHHHHHHhhcccCCCCCCcC
Confidence 999999888888776665568999999999999999999999999999999999876
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8.9e-19 Score=131.78 Aligned_cols=126 Identities=15% Similarity=0.323 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCC--CCCEEEEeccccc
Q 032176 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPE--KPPSVRFHSRINM 91 (146)
Q Consensus 14 ~~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~--~pP~v~f~t~i~H 91 (146)
....|+.|+..+.+.+.+|++ +. |+-.+-+ .|.++|++ ..+.|.||+|+|+|.+|++||. ..|+|.|.+.++|
T Consensus 20 qey~llAEf~lV~~ekL~gIy-vi-PSyan~l--~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfH 94 (258)
T KOG0429|consen 20 QEYALLAEFVLVCREKLDGIY-VI-PSYANKL--LWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFH 94 (258)
T ss_pred HHHHHHHHHHHHHhccCCceE-Ec-ccccccc--eEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccc
Confidence 356788999999988989944 33 5666655 99999995 5668999999999999999994 8999999999999
Q ss_pred CcccCCCCeeeccCCCCCCCCC-CCCCHHHHHHHHHHHhcCCCCCCC--CCCCCCCCC
Q 032176 92 TCVNHETGVVEPKKFGLLVNWQ-REYTMEDILTQLKKEMAAPHNRKL--VQPPEGTYF 146 (146)
Q Consensus 92 Pni~~~~G~icl~~l~~~~~W~-p~~~l~~il~~i~~ll~~p~~~~~--~n~~a~~~~ 146 (146)
|+|++.++.+|++-. ...|. -..+++.||..+|..+.+|+.+.+ .|+||+.+|
T Consensus 95 P~icp~skeLdl~ra--f~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~ 150 (258)
T KOG0429|consen 95 PLICPKSKELDLNRA--FPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLY 150 (258)
T ss_pred cccCCCccceeHhhh--hhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHH
Confidence 999999999999874 46695 557899999999999999997665 699998664
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=6.2e-16 Score=136.88 Aligned_cols=112 Identities=17% Similarity=0.237 Sum_probs=91.1
Q ss_pred HHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecc--cccCc
Q 032176 16 FRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR--INMTC 93 (146)
Q Consensus 16 kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~--i~HPn 93 (146)
+..+.|.+-+..+.+.+++ +.. .|+-+. -..+.|.|+.||||..|.|.|.|.||.+||..||.+...+. .++||
T Consensus 854 ~~~~~~~~~~~~~~~~~~~-vr~-~e~r~d--~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn 929 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIF-VRA-YEDRMD--LLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN 929 (1101)
T ss_pred HHHHHHHHhhhccCCCceE-EEe-chHHHH--HHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence 3455566666667777743 332 455432 55889999999999999999999999999999999999875 58999
Q ss_pred ccCCCCeeeccCCCC-----CCCCCCCCCHHHHHHHHHHHhcCC
Q 032176 94 VNHETGVVEPKKFGL-----LVNWQREYTMEDILTQLKKEMAAP 132 (146)
Q Consensus 94 i~~~~G~icl~~l~~-----~~~W~p~~~l~~il~~i~~ll~~p 132 (146)
+| ++|+||+++|+. .+-|+|+.++..||.+||.|+.+-
T Consensus 930 ly-~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~ 972 (1101)
T KOG0895|consen 930 LY-EDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNE 972 (1101)
T ss_pred cc-cccceehhhhccccCCCccccCcchhHHHHHHHhhhhhccc
Confidence 99 699999999972 478999999999999999987643
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.1e-14 Score=129.03 Aligned_cols=117 Identities=18% Similarity=0.278 Sum_probs=101.1
Q ss_pred cccHHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecc--
Q 032176 11 VVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR-- 88 (146)
Q Consensus 11 ~~~~~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~-- 88 (146)
+....+|+++|++-+.++.+.++ .+. +.+.. ++..++.|.||.||||++|.|.|+|.||..||..||.+.+++.
T Consensus 280 s~~~skrv~ke~~llskdlpEgi-fvr-p~e~R--Md~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~ 355 (1101)
T KOG0895|consen 280 SKNWSKKVAKELKLLSKDLPEGI-FVR-PDEGR--MDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGG 355 (1101)
T ss_pred chhhHHHHHHHhhhhcccCCCCc-ccc-ccccc--cceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccc
Confidence 34458899999999999998883 333 45665 4588999999999999999999999999999999999999987
Q ss_pred -cccCcccCCCCeeeccCCCC-----CCCCCCC-CCHHHHHHHHHHHhcCC
Q 032176 89 -INMTCVNHETGVVEPKKFGL-----LVNWQRE-YTMEDILTQLKKEMAAP 132 (146)
Q Consensus 89 -i~HPni~~~~G~icl~~l~~-----~~~W~p~-~~l~~il~~i~~ll~~p 132 (146)
.+.||.| .+|+||+++|.. .+.|+|. .++.++|.+||.++.+-
T Consensus 356 ~R~nPNlY-n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 356 VRLNPNLY-NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred eeecCCcc-cCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 5899999 699999999862 3679998 89999999999998754
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.1e-09 Score=73.61 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=57.0
Q ss_pred EEEEEEecCCCCCCCCEEEEecccccCcccCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCC
Q 032176 66 YQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 133 (146)
Q Consensus 66 f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~ 133 (146)
.-+.+.|+++||+.||.+|...|+-.-....++|.||+.+|. .++|+.+|+++.++++|...+..-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt-~qgwssay~Ve~vi~qiaatlVkG~ 79 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT-KQGWSSAYEVERVIMQIAATLVKGG 79 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc-cccccchhhHHHHHHHHHHHhhccc
Confidence 346678999999999999988876555544468999999996 8999999999999999999998755
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.46 E-value=4.3e-07 Score=64.61 Aligned_cols=67 Identities=22% Similarity=0.366 Sum_probs=59.3
Q ss_pred CCcEEEEEEEecCCCCCCCCEEEEeccc---ccCcccCCCCeeec---cCCCCCCCCCCCCCHHHHHHHHHHHhcC
Q 032176 62 EGRIYQLKLFCDKDYPEKPPSVRFHSRI---NMTCVNHETGVVEP---KKFGLLVNWQREYTMEDILTQLKKEMAA 131 (146)
Q Consensus 62 egg~f~~~i~fp~~yP~~pP~v~f~t~i---~HPni~~~~G~icl---~~l~~~~~W~p~~~l~~il~~i~~ll~~ 131 (146)
.|+.+.++|.+|++||..||.|....+- +=|||+. +|.+|+ ... .+.|.|.-++.++|.+.+.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~--~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELV--LDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCcc--cCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988654 6799995 999999 443 48999999999999999999874
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.13 E-value=4.6e-06 Score=58.54 Aligned_cols=77 Identities=22% Similarity=0.385 Sum_probs=53.3
Q ss_pred eeEEEEEEECCCCCCCCCcEEE--EEEEecCCCCCCCCEEEEeccc-----ccCcccCCCCeeeccCCCCCCCCCC-CCC
Q 032176 46 MRSWTGTIIGPHNTVHEGRIYQ--LKLFCDKDYPEKPPSVRFHSRI-----NMTCVNHETGVVEPKKFGLLVNWQR-EYT 117 (146)
Q Consensus 46 l~~w~~~i~Gp~~tpyegg~f~--~~i~fp~~yP~~pP~v~f~t~i-----~HPni~~~~G~icl~~l~~~~~W~p-~~~ 117 (146)
+....++|.- .|.|..|. +.|-+|.+||..||.+.....- -+.+|| .+|+|.+..| ++|++ ..+
T Consensus 32 LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL---~~W~~~~s~ 103 (121)
T PF05743_consen 32 LLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYL---QNWNPPSSN 103 (121)
T ss_dssp EEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHH---HT--TTTS-
T ss_pred EEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchh---ccCCCCCCC
Confidence 3466666652 47777775 5667899999999999886432 245999 5999999987 79988 788
Q ss_pred HHHHHHHHHHHhc
Q 032176 118 MEDILTQLKKEMA 130 (146)
Q Consensus 118 l~~il~~i~~ll~ 130 (146)
+.+++..++..+.
T Consensus 104 L~~lv~~l~~~F~ 116 (121)
T PF05743_consen 104 LVDLVQELQAVFS 116 (121)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999888888765
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.32 E-value=0.00021 Score=51.16 Aligned_cols=96 Identities=17% Similarity=0.247 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcE----------EEEEEEecCCCCCCCCEEE
Q 032176 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRI----------YQLKLFCDKDYPEKPPSVR 84 (146)
Q Consensus 15 ~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~----------f~~~i~fp~~yP~~pP~v~ 84 (146)
..||..|+..|-+-. ... ...|+ .|.-.=.-++||-|.|.+ |.+++.+|..||..||.+.
T Consensus 26 ~~RLKEEy~aLI~Yv-----~~n-K~~Dn----dWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~ 95 (161)
T PF08694_consen 26 VQRLKEEYQALIKYV-----ENN-KENDN----DWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIA 95 (161)
T ss_dssp HHHHHHHHHHHHHHH-----HHH-HHTT-------EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B
T ss_pred HHHHHHHHHHHHHHH-----Hhc-ccccC----CeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCccee
Confidence 579999999874300 000 01111 232222235555555533 4566677999999999997
Q ss_pred Eeccc-ccCcccCCCCeeeccCCCCCCCC---CCCCCHHHHH
Q 032176 85 FHSRI-NMTCVNHETGVVEPKKFGLLVNW---QREYTMEDIL 122 (146)
Q Consensus 85 f~t~i-~HPni~~~~G~icl~~l~~~~~W---~p~~~l~~il 122 (146)
.-.-- --.-.| .+|+||++.- ...-| .|.+.+...|
T Consensus 96 lPeLdGKTaKMY-RGGkIClt~H-FkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 96 LPELDGKTAKMY-RGGKICLTDH-FKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp -GGGTTT-SSBC-CCCBB---TT-HHHHHHCTTTT--HHHHH
T ss_pred ccccCCchhhhh-cCceEeeecc-cchhhhhcCCchhHHHHH
Confidence 63211 113345 5999999862 12346 5777777765
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0029 Score=51.28 Aligned_cols=96 Identities=19% Similarity=0.297 Sum_probs=67.5
Q ss_pred CCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEE--EecCCCCCCCCEEEEecc-----cccCcccCCCCeeec
Q 032176 31 DGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKL--FCDKDYPEKPPSVRFHSR-----INMTCVNHETGVVEP 103 (146)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i--~fp~~yP~~pP~v~f~t~-----i~HPni~~~~G~icl 103 (146)
+..-++...++..-.+....++|. .+|.|.+|.+=| -+.+.||..||.+..... -.|-+||. +|.|.+
T Consensus 37 P~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~-nG~V~L 111 (365)
T KOG2391|consen 37 PKTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDP-NGKVYL 111 (365)
T ss_pred cccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCC-CCeEec
Confidence 333455555544322234555544 578888887554 469999999999976532 14899995 999999
Q ss_pred cCCCCCCCCC-CCCCHHHHHHHHHHHhcCCCC
Q 032176 104 KKFGLLVNWQ-REYTMEDILTQLKKEMAAPHN 134 (146)
Q Consensus 104 ~~l~~~~~W~-p~~~l~~il~~i~~ll~~p~~ 134 (146)
..| ..|. |++++..++..+.+.+.++.+
T Consensus 112 PYL---h~W~~pssdLv~Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 112 PYL---HNWDPPSSDLVGLIQELIAAFSEDPP 140 (365)
T ss_pred hhh---ccCCCccchHHHHHHHHHHHhcCCCc
Confidence 998 6996 557788888888888876543
No 30
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.68 E-value=0.34 Score=34.01 Aligned_cols=89 Identities=11% Similarity=0.182 Sum_probs=58.7
Q ss_pred eEEeecCCCCCceeEEEEEEEC--CCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCcccCCC-Cee--eccCCC-
Q 032176 34 VSYGMDDGDDIYMRSWTGTIIG--PHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHET-GVV--EPKKFG- 107 (146)
Q Consensus 34 ~~~~~~~~~~~~l~~w~~~i~G--p~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~~-G~i--cl~~l~- 107 (146)
+.+..+.+... .|-+ |.| -+.+.|.+..-.+-|.+|..||..+|.+.+..+ -+-..+ |.+ |-+...
T Consensus 14 ~~~E~v~eg~~---~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P----~L~~~~G~~iP~~~~~~~~ 85 (122)
T PF14462_consen 14 LRWETVTEGGR---RWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP----PLKLADGGPIPNAAEVTQT 85 (122)
T ss_pred ceEEEEEeCCc---cEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC----ceEccCCCcCCchhcchhh
Confidence 34555555543 5665 666 445569999999999999999999998877654 222223 333 333221
Q ss_pred -----------CCCCCCCCC-CHHHHHHHHHHHhc
Q 032176 108 -----------LLVNWQREY-TMEDILTQLKKEMA 130 (146)
Q Consensus 108 -----------~~~~W~p~~-~l~~il~~i~~ll~ 130 (146)
....|.|.. +|.+.|..|...|.
T Consensus 86 ~~G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 86 FDGRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred cCCeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 235688875 68888888887764
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.48 E-value=0.087 Score=35.23 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=38.9
Q ss_pred HHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEEC--CCCCCCCCcEEEEEEEecCCCCCCCCEEEEeccc
Q 032176 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIG--PHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89 (146)
Q Consensus 17 RL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~G--p~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i 89 (146)
+...|+..|+.--.+. . ......++ ..+.+.+.+ ...+.-....+.+.+.||++||..+|.+...+..
T Consensus 5 ~~~~EieaL~sIy~~~-~-~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 5 QQEEEIEALQSIYPDD-F-IEIESKSP---PSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHSSSS-E-SSSTSSSS---EEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHcCCC-c-cccccCCC---CceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 5677788887643333 1 11112222 155666621 2333344568999999999999999999887654
No 32
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.37 E-value=0.17 Score=37.17 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=49.7
Q ss_pred EEEEecCCCCCCCCEEEEecccc---cCcccCCC-----CeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcC
Q 032176 68 LKLFCDKDYPEKPPSVRFHSRIN---MTCVNHET-----GVVEPKKFGLLVNWQREYTMEDILTQLKKEMAA 131 (146)
Q Consensus 68 ~~i~fp~~yP~~pP~v~f~t~i~---HPni~~~~-----G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~ 131 (146)
+.|.|+.+||..+|.+.+..+.| +||+.. . ..+|+-.-. ...|.+.++++.+|..|...|.+
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~-~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGP-WSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCC-HHHhhhccCHHHHHHHHHHHHHH
Confidence 66899999999999877776543 577763 4 689997643 46789999999999999998854
No 33
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.03 Score=39.68 Aligned_cols=96 Identities=14% Similarity=0.223 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcE----------EEEEEEecCCCCCCCCEEE
Q 032176 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRI----------YQLKLFCDKDYPEKPPSVR 84 (146)
Q Consensus 15 ~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~----------f~~~i~fp~~yP~~pP~v~ 84 (146)
..||..|++.|-.-...+ .+.|+ .|.-.-..++||-|-|.+ |.+++.+|-.||..+|.+.
T Consensus 29 vqrlkeey~sli~yvqnn------k~~d~----dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeia 98 (167)
T KOG3357|consen 29 VQRLKEEYQSLIAYVQNN------KSNDN----DWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIA 98 (167)
T ss_pred HHHHHHHHHHHHHHHHhC------cccCC----cceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccc
Confidence 568999998884411000 01121 444333448888887754 4456667999999999886
Q ss_pred Eeccc-ccCcccCCCCeeeccCCCCCCCC---CCCCCHHHHH
Q 032176 85 FHSRI-NMTCVNHETGVVEPKKFGLLVNW---QREYTMEDIL 122 (146)
Q Consensus 85 f~t~i-~HPni~~~~G~icl~~l~~~~~W---~p~~~l~~il 122 (146)
.-.-- ---..+ .+|+||+..- ...-| .|.+.+...+
T Consensus 99 lpeldgktakmy-rggkiclt~h-fkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 99 LPELDGKTAKMY-RGGKICLTDH-FKPLWARNVPKFGIAHAM 138 (167)
T ss_pred ccccCchhhhhh-cCceEeeccc-cchhhhhcCcchhHHHHH
Confidence 53110 011235 5899999753 12456 4556665543
No 34
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.49 E-value=0.31 Score=32.23 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=22.3
Q ss_pred CcEEEEEEEecCCCCCCCCEEEEecc
Q 032176 63 GRIYQLKLFCDKDYPEKPPSVRFHSR 88 (146)
Q Consensus 63 gg~f~~~i~fp~~yP~~pP~v~f~t~ 88 (146)
.-.+.+.+.||.+||..+|.+.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 34688999999999999999988764
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=85.04 E-value=2.6 Score=33.83 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecccccCc
Q 032176 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (146)
Q Consensus 14 ~~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn 93 (146)
.-++|.+|+.++..+.. +.+.. ++++ ...++.+... .....++|.++.+||..+|.+..--+
T Consensus 100 ~ys~ll~EIe~IGW~kl---~~i~~--d~~l--s~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P----- 161 (291)
T PF09765_consen 100 YYSNLLKEIEAIGWDKL---VQIQF--DDDL--STIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLP----- 161 (291)
T ss_dssp GC-CHHHHHHHHHCGCC---EEEEE---CCC--SEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TT-----
T ss_pred HHHHHHHHHHHhccccc---eEEec--CCCc--cEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCC-----
Confidence 45689999999988663 23222 3443 3777777731 25788999999999999996532211
Q ss_pred ccCCCCeeeccCCCCCCCCCC-CCCHHHHHHHHHHHhc
Q 032176 94 VNHETGVVEPKKFGLLVNWQR-EYTMEDILTQLKKEMA 130 (146)
Q Consensus 94 i~~~~G~icl~~l~~~~~W~p-~~~l~~il~~i~~ll~ 130 (146)
... ...|.+ ..++.+++...+..|.
T Consensus 162 ---------~~~---~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 162 ---------IPF---SLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp ---------S-H---HHHHHCHT-SHHHHHHHHHHHHH
T ss_pred ---------cch---hhhhcccccCHHHHHHHHHHHHH
Confidence 111 146888 7889988888777663
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.25 E-value=7.2 Score=35.54 Aligned_cols=66 Identities=26% Similarity=0.330 Sum_probs=38.2
Q ss_pred HHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcE-EEEEEEecCCCCC-CCCEEEEecc
Q 032176 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRI-YQLKLFCDKDYPE-KPPSVRFHSR 88 (146)
Q Consensus 17 RL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~-f~~~i~fp~~yP~-~pP~v~f~t~ 88 (146)
-|..|+.-|...... +.++..+-.+ ++-.+.+.||-- +=.|-+ .++.|.||.+||. .+|++.|..+
T Consensus 424 nLgeE~S~Ig~k~~n--V~fEkidva~---Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 424 NLGEEFSLIGVKIRN--VNFEKIDVAD---RSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hHHhHHhHhhccccc--cceEeecccc---ceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 466666666554432 2222111121 244566666433 223434 4788999999997 7899999764
No 37
>smart00340 HALZ homeobox associated leucin zipper.
Probab=71.78 E-value=3.7 Score=23.37 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhHcCC
Q 032176 14 RNFRLLEELERGEKGI 29 (146)
Q Consensus 14 ~~kRL~~El~~l~~~~ 29 (146)
.++||++|+.+|..-.
T Consensus 20 eNrRL~ke~~eLralk 35 (44)
T smart00340 20 ENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4889999999997643
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=70.63 E-value=14 Score=30.29 Aligned_cols=59 Identities=22% Similarity=0.411 Sum_probs=41.5
Q ss_pred CCCCcEEEEEEEecCCCCCCCCEEEEe-cccccCcccCCCCeeeccCCCCCCCCCCCC--CHHHHHHHHHH
Q 032176 60 VHEGRIYQLKLFCDKDYPEKPPSVRFH-SRINMTCVNHETGVVEPKKFGLLVNWQREY--TMEDILTQLKK 127 (146)
Q Consensus 60 pyegg~f~~~i~fp~~yP~~pP~v~f~-t~i~HPni~~~~G~icl~~l~~~~~W~p~~--~l~~il~~i~~ 127 (146)
||.|...+-+|.|...||..||-+.|. ..-|+|... . +.. ..+|.+.- .+..++..+..
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s----~--l~~---L~~Wd~~dp~~Ll~li~EL~~ 122 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS----K--LPS---LVNWDPSDPNCLLNLISELRQ 122 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh----h--cch---hhcCCCCCchHHHHHHHHHHH
Confidence 588999999999999999999999996 334777432 1 133 37897663 45555554443
No 39
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=61.72 E-value=13 Score=26.48 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=22.5
Q ss_pred CcEEEEEEEecCCCC-CCCCEEEEec
Q 032176 63 GRIYQLKLFCDKDYP-EKPPSVRFHS 87 (146)
Q Consensus 63 gg~f~~~i~fp~~yP-~~pP~v~f~t 87 (146)
.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 488999999999999 9999999873
No 40
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=59.44 E-value=15 Score=30.12 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=23.2
Q ss_pred CcEEEEEEEecCCCCCCCCEEEEeccccc
Q 032176 63 GRIYQLKLFCDKDYPEKPPSVRFHSRINM 91 (146)
Q Consensus 63 gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 91 (146)
+-.|-++|.+|..||...|.++|.+ +||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 3457788999999999999999986 444
No 41
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=58.02 E-value=16 Score=27.43 Aligned_cols=25 Identities=12% Similarity=0.307 Sum_probs=22.4
Q ss_pred CcEEEEEEEecCCCCCCCCEEEEec
Q 032176 63 GRIYQLKLFCDKDYPEKPPSVRFHS 87 (146)
Q Consensus 63 gg~f~~~i~fp~~yP~~pP~v~f~t 87 (146)
.|.|.|+=.+|--||.++|.|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 3788999999999999999999874
No 42
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=57.83 E-value=24 Score=25.97 Aligned_cols=20 Identities=15% Similarity=-0.041 Sum_probs=15.0
Q ss_pred ccccc---CcccCCCCeeeccCCC
Q 032176 87 SRINM---TCVNHETGVVEPKKFG 107 (146)
Q Consensus 87 t~i~H---Pni~~~~G~icl~~l~ 107 (146)
|++|| +||+ .+|+||+....
T Consensus 90 T~Ly~aPf~NV~-~~g~vC~G~~~ 112 (175)
T PF14460_consen 90 TPLYHAPFFNVY-SNGSVCWGNNS 112 (175)
T ss_pred CeeEeCCccccC-CCCcEeeCCCc
Confidence 44555 6999 59999998743
No 43
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=51.96 E-value=14 Score=28.41 Aligned_cols=21 Identities=19% Similarity=0.494 Sum_probs=18.8
Q ss_pred EEEEEEEecCCCCCCCCEEEE
Q 032176 65 IYQLKLFCDKDYPEKPPSVRF 85 (146)
Q Consensus 65 ~f~~~i~fp~~yP~~pP~v~f 85 (146)
.+.+.+.++.+||..+|-+.+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred cEEEEEEccCCCCCCCcceec
Confidence 788999999999999999943
No 44
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=49.69 E-value=27 Score=25.42 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=22.1
Q ss_pred CcEEEEEEEecCCCC-----CCCCEEEEec
Q 032176 63 GRIYQLKLFCDKDYP-----EKPPSVRFHS 87 (146)
Q Consensus 63 gg~f~~~i~fp~~yP-----~~pP~v~f~t 87 (146)
.|.|.|+=.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 378999999999999 8999999874
No 45
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.92 E-value=9.9 Score=28.74 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=27.8
Q ss_pred CCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCC
Q 032176 98 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHN 134 (146)
Q Consensus 98 ~G~icl~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~ 134 (146)
.+.+|+++|+ ..|+|.+|.++.+.-++.++.+-..
T Consensus 135 ~~~f~~sIlD--r~Y~pdmt~eea~~lmkKCv~El~k 169 (200)
T KOG0177|consen 135 GSYFCLSILD--RYYKPDMTIEEALDLMKKCVLELKK 169 (200)
T ss_pred hhhhhHHHHH--hhhCCCCCHHHHHHHHHHHHHHHHH
Confidence 6789999986 8999999999888777766654333
No 46
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=39.56 E-value=44 Score=25.18 Aligned_cols=24 Identities=8% Similarity=0.288 Sum_probs=21.1
Q ss_pred CcEEEEEEEecCCCCC-----CCCEEEEe
Q 032176 63 GRIYQLKLFCDKDYPE-----KPPSVRFH 86 (146)
Q Consensus 63 gg~f~~~i~fp~~yP~-----~pP~v~f~ 86 (146)
.|.|.|+=.+|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3789999999999998 99999886
No 47
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=37.49 E-value=17 Score=26.56 Aligned_cols=14 Identities=14% Similarity=0.010 Sum_probs=11.4
Q ss_pred ccccCcccCCCCeeec
Q 032176 88 RINMTCVNHETGVVEP 103 (146)
Q Consensus 88 ~i~HPni~~~~G~icl 103 (146)
++|||+.| .|.+|+
T Consensus 50 PiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 50 PIYHPSTD--CGDHVV 63 (165)
T ss_pred CccCCccC--CCCEEE
Confidence 68999998 677665
No 48
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=37.17 E-value=36 Score=30.05 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=22.9
Q ss_pred CCCCCcEEEEEEEecCCCCC---CCCEEEEecc
Q 032176 59 TVHEGRIYQLKLFCDKDYPE---KPPSVRFHSR 88 (146)
Q Consensus 59 tpyegg~f~~~i~fp~~yP~---~pP~v~f~t~ 88 (146)
+||.=|.|-+ +.+|++||+ +-|.++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4566677765 557999997 8899999996
No 49
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=37.12 E-value=1.2e+02 Score=19.66 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=26.2
Q ss_pred eEEEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCEEEEecc
Q 032176 47 RSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR 88 (146)
Q Consensus 47 ~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~ 88 (146)
.+|.+.|.|+.+.-...-+=++.+.+.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 48999999988764445566788888888874 55544443
No 50
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=36.85 E-value=53 Score=24.60 Aligned_cols=23 Identities=9% Similarity=0.226 Sum_probs=20.2
Q ss_pred cEEEEEEEecCCCCC-----CCCEEEEe
Q 032176 64 RIYQLKLFCDKDYPE-----KPPSVRFH 86 (146)
Q Consensus 64 g~f~~~i~fp~~yP~-----~pP~v~f~ 86 (146)
|.|.|+=.+|--||. .||.|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 789999999999995 89988876
No 51
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=36.71 E-value=16 Score=23.47 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=12.9
Q ss_pred cccccHHHHHHHHHHHh
Q 032176 9 SVVVPRNFRLLEELERG 25 (146)
Q Consensus 9 ~~~~~~~kRL~~El~~l 25 (146)
+...+-.|||++||+-|
T Consensus 55 ss~LSQLKRiQRdlrGL 71 (76)
T PF08203_consen 55 SSVLSQLKRIQRDLRGL 71 (76)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 34455689999999876
No 52
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=35.27 E-value=50 Score=27.00 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=22.1
Q ss_pred cEEEEEEEecCCCCCCCCEEEEecc
Q 032176 64 RIYQLKLFCDKDYPEKPPSVRFHSR 88 (146)
Q Consensus 64 g~f~~~i~fp~~yP~~pP~v~f~t~ 88 (146)
-++.+.+..+..||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3778889999999999999999876
No 53
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=34.73 E-value=83 Score=24.47 Aligned_cols=37 Identities=8% Similarity=0.096 Sum_probs=23.5
Q ss_pred ccccc---CcccCCCCeeeccCCCCCCCCCCC-CCHHHHHHHHHHHhc
Q 032176 87 SRINM---TCVNHETGVVEPKKFGLLVNWQRE-YTMEDILTQLKKEMA 130 (146)
Q Consensus 87 t~i~H---Pni~~~~G~icl~~l~~~~~W~p~-~~l~~il~~i~~ll~ 130 (146)
|++|| .||+ .+|+||+.... .|. .++.+ +......+.
T Consensus 131 T~L~~aPffNV~-~~G~VC~G~~~-----~P~~~~~~~-i~~we~~FF 171 (228)
T TIGR03737 131 TKLYQAPLFNVW-SNGEICAGNAR-----LPDRPTVAN-ISAWEDAFF 171 (228)
T ss_pred CeeccCCcCccC-CCCeEeeCCCc-----CCCCcCHHH-HHHHHHHHh
Confidence 34566 5999 59999997642 343 34555 666666554
No 54
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=32.27 E-value=54 Score=25.23 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=43.2
Q ss_pred CCCCEEEEecccccCcccC-CCCeeeccCCCCCCCC--CCCCCHHHHHHHHHHHhcCCCCCC
Q 032176 78 EKPPSVRFHSRINMTCVNH-ETGVVEPKKFGLLVNW--QREYTMEDILTQLKKEMAAPHNRK 136 (146)
Q Consensus 78 ~~pP~v~f~t~i~HPni~~-~~G~icl~~l~~~~~W--~p~~~l~~il~~i~~ll~~p~~~~ 136 (146)
..||.|.|-.+.|..-||. +-|.|--.+- ..+| -|...+.+-|..|-.+|-.|+.+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaela--nagrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELA--NAGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHh--hcCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 4799999999999999983 2444433443 3566 588899999999999999887654
No 55
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=29.31 E-value=71 Score=26.73 Aligned_cols=63 Identities=16% Similarity=0.380 Sum_probs=41.1
Q ss_pred eEEE--EEEECCCCCCCCCcE-------EEEEEEecCCCCCCCCEEEEecccccCcccCCCCee---eccCCCCCCCCCC
Q 032176 47 RSWT--GTIIGPHNTVHEGRI-------YQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV---EPKKFGLLVNWQR 114 (146)
Q Consensus 47 ~~w~--~~i~Gp~~tpyegg~-------f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~~G~i---cl~~l~~~~~W~p 114 (146)
..|+ +.++||+|| |.+ =++.|...+.|+.. --| |.++ ...|=.
T Consensus 174 It~NRliLlhGPPGT---GKTSLCKaLaQkLSIR~~~~y~~~-------------------~liEinshsL---FSKWFs 228 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGT---GKTSLCKALAQKLSIRTNDRYYKG-------------------QLIEINSHSL---FSKWFS 228 (423)
T ss_pred eeeeeEEEEeCCCCC---ChhHHHHHHHHhheeeecCccccc-------------------eEEEEehhHH---HHHHHh
Confidence 3776 677999998 533 46888888888731 111 2222 356733
Q ss_pred C--CCHHHHHHHHHHHhcCCCC
Q 032176 115 E--YTMEDILTQLKKEMAAPHN 134 (146)
Q Consensus 115 ~--~~l~~il~~i~~ll~~p~~ 134 (146)
. --+..++..|+.++.+++.
T Consensus 229 ESgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 229 ESGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred hhhhHHHHHHHHHHHHHhCCCc
Confidence 3 3477888999999988653
No 56
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=26.46 E-value=93 Score=25.02 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.7
Q ss_pred cEEEEEEEecCCCC------------------CCCCEEEEec
Q 032176 64 RIYQLKLFCDKDYP------------------EKPPSVRFHS 87 (146)
Q Consensus 64 g~f~~~i~fp~~yP------------------~~pP~v~f~t 87 (146)
|.|.|+=.+|.-|| ..||.|.|.-
T Consensus 181 G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 181 GRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 78999999999997 6889998863
No 57
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=25.75 E-value=2.6e+02 Score=21.36 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEEecCCC------------------
Q 032176 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY------------------ 76 (146)
Q Consensus 15 ~kRL~~El~~l~~~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~y------------------ 76 (146)
..||...++++++-.. + ..+ =|.+.+....+.-| || |.+.++|.++=
T Consensus 11 ~eR~~e~~~~~k~~L~----~-----a~~----GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~ 75 (235)
T PF14135_consen 11 AERINEALAEYKKILT----S-----APN----GWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSS 75 (235)
T ss_pred HHHHHHHHHHHHHHHh----c-----CCC----ceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEE
Confidence 5688888888877331 1 112 68888883333334 44 77777776543
Q ss_pred -C---CCCCEEEEec--ccccCcccC
Q 032176 77 -P---EKPPSVRFHS--RINMTCVNH 96 (146)
Q Consensus 77 -P---~~pP~v~f~t--~i~HPni~~ 96 (146)
- ..-|.+.|.| ++.|--.++
T Consensus 76 Y~~~~~~gp~LsFdTyN~~iH~~s~p 101 (235)
T PF14135_consen 76 YRLKQDQGPVLSFDTYNEYIHYFSDP 101 (235)
T ss_pred EEEecCCceEEEEEeCCceEEEccCC
Confidence 1 2337788876 356766554
No 58
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=25.43 E-value=1.6e+02 Score=23.32 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=28.1
Q ss_pred EEEEEEECCCCCCCCC----cEEEEEEEec-----CCCCCCCCEEEEeccccc
Q 032176 48 SWTGTIIGPHNTVHEG----RIYQLKLFCD-----KDYPEKPPSVRFHSRINM 91 (146)
Q Consensus 48 ~w~~~i~Gp~~tpyeg----g~f~~~i~fp-----~~yP~~pP~v~f~t~i~H 91 (146)
=|++.... .+|--.. ..|+.++++. .|-||++|+|..+++-|.
T Consensus 104 PWkl~YrV-~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 104 PWKLYYRV-EDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CeEEEEEe-ecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 47766653 3333322 3456667764 688999999999987553
No 59
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=25.09 E-value=70 Score=21.71 Aligned_cols=19 Identities=26% Similarity=0.761 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCcEEEE
Q 032176 48 SWTGTIIGPHNTVHEGRIYQL 68 (146)
Q Consensus 48 ~w~~~i~Gp~~tpyegg~f~~ 68 (146)
.|+|.|=| +..|+|-.|.|
T Consensus 2 kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred ceEEEecC--CeeeecceEEE
Confidence 79999987 56899999987
No 60
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=24.91 E-value=52 Score=20.10 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhHcC
Q 032176 15 NFRLLEELERGEKG 28 (146)
Q Consensus 15 ~kRL~~El~~l~~~ 28 (146)
-+||++||.++--+
T Consensus 36 r~rL~kEL~d~D~~ 49 (59)
T PF12065_consen 36 RQRLRKELQDMDMC 49 (59)
T ss_pred HHHHHHHHHHcccc
Confidence 46788888887543
No 61
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=24.52 E-value=1.1e+02 Score=24.58 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=21.2
Q ss_pred CcEEEEEEEecCCCC------------------CCCCEEEEec
Q 032176 63 GRIYQLKLFCDKDYP------------------EKPPSVRFHS 87 (146)
Q Consensus 63 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 87 (146)
.|.|.|+=..|.-|| ..||.|.|.-
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 214 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFMV 214 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEEE
Confidence 488999999999998 5899998863
No 62
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=24.08 E-value=1.1e+02 Score=24.53 Aligned_cols=24 Identities=8% Similarity=0.284 Sum_probs=20.3
Q ss_pred CcEEEEEEEecCCCC------------------CCCCEEEEe
Q 032176 63 GRIYQLKLFCDKDYP------------------EKPPSVRFH 86 (146)
Q Consensus 63 gg~f~~~i~fp~~yP------------------~~pP~v~f~ 86 (146)
.|.|.|+=.+|..|| ..||.|.|.
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 488999999998887 588999886
No 63
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=23.95 E-value=57 Score=19.76 Aligned_cols=23 Identities=22% Similarity=0.605 Sum_probs=13.3
Q ss_pred CCCCCCCHHHHHHHHHHHh-cCCC
Q 032176 111 NWQREYTMEDILTQLKKEM-AAPH 133 (146)
Q Consensus 111 ~W~p~~~l~~il~~i~~ll-~~p~ 133 (146)
+|.|.++|.+++...-... .+|+
T Consensus 37 gW~p~~~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp ----SSSHHHHHHHHHHHHHHSTT
T ss_pred CCCcCCCHHHHHHHHHHHHHHCcC
Confidence 7999999999998655543 3443
No 64
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=23.21 E-value=85 Score=26.29 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=26.7
Q ss_pred cccCCCCeeeccCCC-CCCCCCCCC--CHHHHHHHHHHH
Q 032176 93 CVNHETGVVEPKKFG-LLVNWQREY--TMEDILTQLKKE 128 (146)
Q Consensus 93 ni~~~~G~icl~~l~-~~~~W~p~~--~l~~il~~i~~l 128 (146)
.|+|++|+||.++=- .-+...|.. +|.+++..|.++
T Consensus 331 cVHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 331 CVHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred cccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 477799999998731 015666554 899999999888
No 65
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=23.10 E-value=1.2e+02 Score=24.39 Aligned_cols=25 Identities=16% Similarity=0.471 Sum_probs=20.9
Q ss_pred CcEEEEEEEecCCCC------------------CCCCEEEEec
Q 032176 63 GRIYQLKLFCDKDYP------------------EKPPSVRFHS 87 (146)
Q Consensus 63 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 87 (146)
.|.|.|+=..|.-|| ..||.|.|.-
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 218 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFFV 218 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEEE
Confidence 388999999999996 6789998863
No 66
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=23.02 E-value=1.2e+02 Score=23.34 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=20.6
Q ss_pred CcEEEEEEEecCCCCC-------CCCEEEEe
Q 032176 63 GRIYQLKLFCDKDYPE-------KPPSVRFH 86 (146)
Q Consensus 63 gg~f~~~i~fp~~yP~-------~pP~v~f~ 86 (146)
.|.|.|+=..|--||. .||.|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999974 89999885
No 67
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=21.83 E-value=1.3e+02 Score=23.12 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=20.7
Q ss_pred CcEEEEEEEecCCCCC-------CCCEEEEe
Q 032176 63 GRIYQLKLFCDKDYPE-------KPPSVRFH 86 (146)
Q Consensus 63 gg~f~~~i~fp~~yP~-------~pP~v~f~ 86 (146)
.|.|.|+=.+|--||. .||.|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999889999975 89999885
No 68
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=21.53 E-value=1.8e+02 Score=20.71 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=12.7
Q ss_pred EEEEEEECCCCCCCC
Q 032176 48 SWTGTIIGPHNTVHE 62 (146)
Q Consensus 48 ~w~~~i~Gp~~tpye 62 (146)
.|.|++.|++||+..
T Consensus 49 ~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 49 WYTVTVQGPDGSIRK 63 (139)
T ss_pred ceEEEEECCCCccee
Confidence 678999999998774
No 69
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=20.34 E-value=1.5e+02 Score=23.25 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=20.1
Q ss_pred CcEEEEEEEecCCCC------------------CCCCEEEEe
Q 032176 63 GRIYQLKLFCDKDYP------------------EKPPSVRFH 86 (146)
Q Consensus 63 gg~f~~~i~fp~~yP------------------~~pP~v~f~ 86 (146)
.|.|.|+=..|.-|| ..||.|.|.
T Consensus 150 ~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 150 DGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 488999999999997 478998886
Done!