Query 032179
Match_columns 146
No_of_seqs 155 out of 2431
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 10:39:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03087 BODYGUARD 1 domain co 99.7 3.8E-17 8.3E-22 132.5 10.2 136 2-137 343-479 (481)
2 KOG1454 Predicted hydrolase/ac 99.6 8.9E-15 1.9E-19 113.8 8.5 123 2-137 201-324 (326)
3 PRK10349 carboxylesterase BioH 99.4 6E-13 1.3E-17 99.2 8.3 69 67-136 187-255 (256)
4 PLN02965 Probable pheophorbida 99.4 7E-13 1.5E-17 99.1 8.2 66 71-137 188-253 (255)
5 TIGR03343 biphenyl_bphD 2-hydr 99.4 9.2E-13 2E-17 99.1 8.5 68 67-135 214-281 (282)
6 TIGR01738 bioH putative pimelo 99.4 1.7E-12 3.7E-17 94.2 8.0 67 67-134 179-245 (245)
7 TIGR02240 PHA_depoly_arom poly 99.4 2.2E-12 4.7E-17 97.4 8.9 75 69-145 200-274 (276)
8 PLN02679 hydrolase, alpha/beta 99.4 2.9E-12 6.3E-17 100.8 8.2 70 67-137 283-357 (360)
9 PLN02824 hydrolase, alpha/beta 99.3 3E-12 6.5E-17 97.4 7.6 67 69-136 227-293 (294)
10 PRK07581 hypothetical protein; 99.3 6.8E-12 1.5E-16 97.5 8.6 70 67-137 266-336 (339)
11 PRK03592 haloalkane dehalogena 99.3 4E-12 8.6E-17 96.8 6.8 70 69-139 221-291 (295)
12 TIGR03611 RutD pyrimidine util 99.3 1.2E-11 2.7E-16 90.6 8.4 68 68-136 190-257 (257)
13 PRK00175 metX homoserine O-ace 99.3 7.8E-12 1.7E-16 99.0 7.5 72 67-139 300-376 (379)
14 PRK06489 hypothetical protein; 99.3 2.2E-11 4.8E-16 95.6 8.8 70 66-137 282-357 (360)
15 PRK08775 homoserine O-acetyltr 99.3 1.1E-11 2.3E-16 96.8 6.9 67 72-139 273-341 (343)
16 PLN02578 hydrolase 99.3 3.2E-11 6.8E-16 94.6 8.9 67 67-135 287-353 (354)
17 TIGR01392 homoserO_Ac_trn homo 99.2 1.1E-11 2.5E-16 96.9 6.1 68 67-135 279-351 (351)
18 TIGR03056 bchO_mg_che_rel puta 99.2 3.2E-11 6.8E-16 90.0 8.1 66 69-135 213-278 (278)
19 PRK00870 haloalkane dehalogena 99.2 2.5E-11 5.4E-16 92.8 6.6 65 70-136 233-300 (302)
20 PRK03204 haloalkane dehalogena 99.2 3.5E-11 7.5E-16 91.8 7.0 59 76-135 227-286 (286)
21 PRK10673 acyl-CoA esterase; Pr 99.2 5.8E-11 1.2E-15 88.0 7.9 64 72-136 191-254 (255)
22 TIGR02427 protocat_pcaD 3-oxoa 99.2 9.6E-11 2.1E-15 85.0 8.1 68 67-135 184-251 (251)
23 TIGR01250 pro_imino_pep_2 prol 99.2 1.1E-10 2.5E-15 86.6 8.4 67 67-135 222-288 (288)
24 PLN02385 hydrolase; alpha/beta 99.2 1E-10 2.2E-15 91.5 8.1 68 69-137 272-345 (349)
25 PHA02857 monoglyceride lipase; 99.1 3.5E-10 7.5E-15 85.2 8.3 67 69-136 202-272 (276)
26 PRK06765 homoserine O-acetyltr 99.1 3.7E-10 7.9E-15 90.0 8.1 69 67-136 314-387 (389)
27 PLN02511 hydrolase 99.1 1.6E-10 3.5E-15 91.9 4.4 75 69-144 291-372 (388)
28 PLN02298 hydrolase, alpha/beta 99.1 7.9E-10 1.7E-14 85.6 8.1 69 69-138 244-318 (330)
29 PLN03084 alpha/beta hydrolase 99.0 7.3E-10 1.6E-14 88.1 7.9 60 74-135 323-382 (383)
30 KOG2382 Predicted alpha/beta h 99.0 5.5E-10 1.2E-14 85.8 6.5 64 73-137 250-313 (315)
31 TIGR03695 menH_SHCHC 2-succiny 99.0 1E-09 2.2E-14 79.4 7.3 66 68-135 186-251 (251)
32 PRK11126 2-succinyl-6-hydroxy- 99.0 1E-09 2.2E-14 80.7 7.4 63 67-136 179-241 (242)
33 PF12697 Abhydrolase_6: Alpha/ 99.0 4.6E-10 9.9E-15 80.1 5.3 62 67-129 167-228 (228)
34 PLN02894 hydrolase, alpha/beta 99.0 1.5E-09 3.3E-14 86.7 8.0 70 66-137 315-385 (402)
35 PF00561 Abhydrolase_1: alpha/ 99.0 8.1E-10 1.8E-14 79.9 5.8 64 67-131 166-229 (230)
36 PRK10749 lysophospholipase L2; 99.0 1.3E-09 2.8E-14 84.7 7.2 67 69-136 252-328 (330)
37 KOG2984 Predicted hydrolase [G 99.0 7.1E-10 1.5E-14 80.4 4.9 69 68-137 208-276 (277)
38 PLN02980 2-oxoglutarate decarb 99.0 2.1E-09 4.5E-14 98.3 8.2 72 67-140 1559-1642(1655)
39 PLN02652 hydrolase; alpha/beta 98.9 3.5E-09 7.5E-14 84.6 8.0 69 69-137 317-387 (395)
40 PLN02211 methyl indole-3-aceta 98.9 5.3E-09 1.1E-13 79.4 7.8 63 73-137 207-270 (273)
41 TIGR01249 pro_imino_pep_1 prol 98.9 4.6E-09 9.9E-14 80.7 7.3 63 69-135 240-303 (306)
42 PRK14875 acetoin dehydrogenase 98.9 6.8E-09 1.5E-13 81.1 7.8 67 66-136 304-370 (371)
43 KOG4178 Soluble epoxide hydrol 98.8 1.1E-08 2.4E-13 78.7 6.8 66 71-137 253-320 (322)
44 PRK05855 short chain dehydroge 98.7 2.2E-08 4.7E-13 82.4 5.9 65 72-138 229-293 (582)
45 PRK10985 putative hydrolase; P 98.6 1.1E-07 2.5E-12 73.7 7.2 69 68-137 247-320 (324)
46 PF08386 Abhydrolase_4: TAP-li 98.6 2.3E-07 4.9E-12 60.8 7.3 62 75-137 33-94 (103)
47 KOG1552 Predicted alpha/beta h 98.6 8.6E-08 1.9E-12 71.7 5.2 70 69-140 185-255 (258)
48 PF00326 Peptidase_S9: Prolyl 98.6 8E-08 1.7E-12 70.0 5.0 63 75-137 143-209 (213)
49 COG1647 Esterase/lipase [Gener 98.6 1.1E-07 2.4E-12 69.7 5.6 69 68-136 173-243 (243)
50 PRK05077 frsA fermentation/res 98.6 2.4E-07 5.2E-12 74.5 8.0 60 73-136 352-411 (414)
51 TIGR01607 PST-A Plasmodium sub 98.6 4.9E-07 1.1E-11 70.6 8.9 64 71-135 263-331 (332)
52 KOG4409 Predicted hydrolase/ac 98.5 6.4E-07 1.4E-11 69.7 8.0 69 67-137 292-364 (365)
53 COG0596 MhpC Predicted hydrola 98.5 6.8E-07 1.5E-11 64.0 7.6 65 70-135 215-280 (282)
54 PRK13604 luxD acyl transferase 98.5 7.8E-07 1.7E-11 68.7 8.0 62 69-136 195-258 (307)
55 PRK10566 esterase; Provisional 98.4 1.2E-06 2.5E-11 65.0 7.2 62 70-136 179-247 (249)
56 PLN02872 triacylglycerol lipas 98.4 1.3E-06 2.9E-11 69.8 7.9 66 72-137 319-389 (395)
57 TIGR01838 PHA_synth_I poly(R)- 98.4 3.9E-07 8.5E-12 75.3 4.1 58 66-124 405-462 (532)
58 TIGR03100 hydr1_PEP hydrolase, 98.4 1E-06 2.3E-11 66.8 6.1 66 69-135 200-273 (274)
59 COG1506 DAP2 Dipeptidyl aminop 98.3 2.4E-06 5.3E-11 71.9 7.3 68 69-136 544-615 (620)
60 KOG1455 Lysophospholipase [Lip 98.3 1.8E-06 3.9E-11 66.1 5.7 70 67-136 237-311 (313)
61 PRK07868 acyl-CoA synthetase; 98.3 3E-06 6.5E-11 74.8 7.6 67 71-137 292-361 (994)
62 PF12695 Abhydrolase_5: Alpha/ 98.2 2.8E-06 6E-11 57.5 4.8 48 69-116 97-145 (145)
63 TIGR01836 PHA_synth_III_C poly 98.2 5.3E-06 1.2E-10 65.0 6.4 65 71-136 281-349 (350)
64 COG2267 PldB Lysophospholipase 98.1 1.2E-05 2.6E-10 62.1 7.3 66 72-137 224-294 (298)
65 PF02230 Abhydrolase_2: Phosph 98.1 1.1E-05 2.3E-10 59.1 6.2 57 76-137 155-215 (216)
66 PRK11460 putative hydrolase; P 98.1 8.9E-06 1.9E-10 60.4 5.5 60 74-134 146-209 (232)
67 PRK11071 esterase YqiA; Provis 98.0 1.9E-05 4.1E-10 57.0 6.4 55 75-135 135-189 (190)
68 KOG2551 Phospholipase/carboxyh 98.0 3E-05 6.5E-10 57.0 6.7 62 72-137 159-220 (230)
69 KOG4391 Predicted alpha/beta h 97.9 2.1E-05 4.5E-10 58.1 5.5 69 69-139 214-284 (300)
70 KOG4667 Predicted esterase [Li 97.9 2E-05 4.3E-10 58.0 4.5 59 75-135 198-256 (269)
71 PF01738 DLH: Dienelactone hyd 97.9 8.4E-05 1.8E-09 54.3 7.8 56 68-123 137-196 (218)
72 COG0429 Predicted hydrolase of 97.6 7.1E-05 1.5E-09 58.1 4.2 68 69-137 267-340 (345)
73 COG0400 Predicted esterase [Ge 97.5 0.00036 7.9E-09 51.2 6.4 57 75-137 145-205 (207)
74 COG1073 Hydrolases of the alph 97.4 0.0007 1.5E-08 50.5 7.1 69 67-136 222-296 (299)
75 COG2021 MET2 Homoserine acetyl 97.4 0.0025 5.3E-08 50.4 9.7 70 66-136 296-367 (368)
76 PF05448 AXE1: Acetyl xylan es 97.3 0.0011 2.4E-08 51.7 7.5 65 67-136 253-319 (320)
77 COG2945 Predicted hydrolase of 97.3 0.00066 1.4E-08 49.1 5.7 63 70-135 143-205 (210)
78 PF08840 BAAT_C: BAAT / Acyl-C 97.3 0.00047 1E-08 50.7 4.6 48 71-118 110-164 (213)
79 PF03959 FSH1: Serine hydrolas 97.2 0.00047 1E-08 50.5 4.4 45 73-118 158-203 (212)
80 PF06821 Ser_hydrolase: Serine 97.0 0.0012 2.6E-08 47.0 4.7 43 75-118 113-155 (171)
81 PF03096 Ndr: Ndr family; Int 97.0 0.0052 1.1E-07 47.1 8.2 70 66-138 209-280 (283)
82 PF05705 DUF829: Eukaryotic pr 97.0 0.0011 2.4E-08 49.2 4.6 60 75-134 177-240 (240)
83 COG3208 GrsT Predicted thioest 97.0 0.0027 5.8E-08 47.5 6.2 62 73-136 173-235 (244)
84 PF10142 PhoPQ_related: PhoPQ- 97.0 0.0028 6.2E-08 50.3 6.7 67 67-137 253-320 (367)
85 KOG3043 Predicted hydrolase re 96.9 0.0039 8.5E-08 46.2 6.7 50 69-118 157-211 (242)
86 PRK05371 x-prolyl-dipeptidyl a 96.9 0.0064 1.4E-07 52.8 9.1 70 67-137 446-519 (767)
87 PTZ00472 serine carboxypeptida 96.9 0.0034 7.4E-08 51.4 6.8 61 75-136 363-458 (462)
88 PLN02442 S-formylglutathione h 96.7 0.0069 1.5E-07 46.3 6.8 47 72-118 213-264 (283)
89 TIGR01849 PHB_depoly_PhaZ poly 96.7 0.0037 8E-08 50.3 5.2 65 71-136 332-405 (406)
90 PF09752 DUF2048: Uncharacteri 96.6 0.0046 9.9E-08 48.6 5.2 57 78-135 291-347 (348)
91 KOG1838 Alpha/beta hydrolase [ 96.5 0.0054 1.2E-07 49.2 5.4 70 67-137 313-388 (409)
92 PF00450 Peptidase_S10: Serine 96.4 0.0074 1.6E-07 48.0 5.5 61 74-135 328-414 (415)
93 KOG2931 Differentiation-relate 96.2 0.038 8.3E-07 42.6 7.9 61 74-137 244-306 (326)
94 PF08538 DUF1749: Protein of u 96.2 0.0033 7.1E-08 48.6 2.2 70 66-135 222-303 (303)
95 TIGR02821 fghA_ester_D S-formy 96.1 0.016 3.5E-07 43.9 5.8 44 75-118 210-258 (275)
96 COG3243 PhaC Poly(3-hydroxyalk 96.1 0.011 2.4E-07 47.6 4.8 53 70-123 324-377 (445)
97 PLN02213 sinapoylglucose-malat 96.0 0.032 7E-07 43.5 7.1 59 76-136 233-316 (319)
98 PF02273 Acyl_transf_2: Acyl t 95.9 0.053 1.2E-06 41.0 7.5 66 57-124 176-243 (294)
99 COG0412 Dienelactone hydrolase 95.9 0.042 9.2E-07 41.0 7.0 48 71-118 153-204 (236)
100 PRK10115 protease 2; Provision 95.8 0.027 5.8E-07 48.4 6.2 50 69-118 598-655 (686)
101 TIGR01839 PHA_synth_II poly(R) 95.6 0.031 6.8E-07 46.7 5.7 48 70-118 435-483 (560)
102 COG3571 Predicted hydrolase of 95.6 0.03 6.6E-07 39.8 4.7 49 69-118 135-183 (213)
103 KOG3253 Predicted alpha/beta h 95.6 0.099 2.1E-06 44.2 8.4 49 70-118 298-347 (784)
104 PF05728 UPF0227: Uncharacteri 95.4 0.083 1.8E-06 38.2 6.7 54 75-134 133-186 (187)
105 PLN02209 serine carboxypeptida 95.3 0.089 1.9E-06 42.9 7.3 59 76-136 351-434 (437)
106 PLN03016 sinapoylglucose-malat 95.0 0.12 2.6E-06 42.1 7.4 59 76-136 347-430 (433)
107 KOG2100 Dipeptidyl aminopeptid 95.0 0.088 1.9E-06 45.8 7.0 70 70-139 675-749 (755)
108 KOG1282 Serine carboxypeptidas 94.8 0.14 3E-06 42.0 7.2 60 76-136 363-447 (454)
109 KOG2112 Lysophospholipase [Lip 94.8 0.057 1.2E-06 39.5 4.5 56 76-136 144-203 (206)
110 KOG2624 Triglyceride lipase-ch 94.7 0.13 2.8E-06 41.5 6.7 67 71-137 327-398 (403)
111 PF03583 LIP: Secretory lipase 94.6 0.14 3E-06 39.5 6.3 57 75-136 218-280 (290)
112 COG3545 Predicted esterase of 94.3 0.064 1.4E-06 38.4 3.7 61 75-136 116-178 (181)
113 PF11339 DUF3141: Protein of u 94.1 0.13 2.8E-06 42.7 5.4 67 69-136 290-367 (581)
114 PF06500 DUF1100: Alpha/beta h 94.0 0.16 3.5E-06 41.1 5.8 59 73-136 349-408 (411)
115 COG4757 Predicted alpha/beta h 94.0 0.2 4.3E-06 37.7 5.7 64 69-133 209-279 (281)
116 PRK10162 acetyl esterase; Prov 93.0 0.37 8E-06 37.4 6.3 58 77-136 249-314 (318)
117 KOG1551 Uncharacterized conser 93.0 0.27 5.8E-06 37.8 5.2 59 79-138 309-367 (371)
118 COG3458 Acetyl esterase (deace 92.8 0.38 8.3E-06 37.0 5.8 67 67-137 250-317 (321)
119 COG4287 PqaA PhoPQ-activated p 92.3 0.16 3.5E-06 40.6 3.4 61 73-137 326-387 (507)
120 PLN00021 chlorophyllase 92.3 0.49 1.1E-05 36.9 6.0 48 74-122 187-245 (313)
121 PF06342 DUF1057: Alpha/beta h 92.2 0.61 1.3E-05 36.0 6.3 38 66-103 202-239 (297)
122 TIGR01840 esterase_phb esteras 92.0 0.14 3E-06 37.1 2.6 28 76-103 168-195 (212)
123 PF07859 Abhydrolase_3: alpha/ 91.5 0.19 4.1E-06 36.0 2.9 40 77-118 167-210 (211)
124 PF06850 PHB_depo_C: PHB de-po 90.8 0.58 1.3E-05 34.1 4.6 60 76-136 134-201 (202)
125 KOG3975 Uncharacterized conser 90.1 2.8 6E-05 32.0 7.8 128 2-134 164-300 (301)
126 PF02129 Peptidase_S15: X-Pro 88.9 1 2.2E-05 34.0 5.0 46 69-116 221-271 (272)
127 COG0657 Aes Esterase/lipase [L 88.2 2.1 4.6E-05 32.8 6.5 43 76-118 245-289 (312)
128 COG4188 Predicted dienelactone 88.2 0.23 5E-06 39.5 1.1 56 70-126 245-303 (365)
129 KOG4627 Kynurenine formamidase 87.0 0.71 1.5E-05 34.3 3.0 52 70-122 201-252 (270)
130 PF07519 Tannase: Tannase and 86.2 2.5 5.4E-05 34.9 6.1 68 69-136 346-426 (474)
131 PF06057 VirJ: Bacterial virul 86.0 2.6 5.5E-05 30.7 5.4 61 67-135 129-190 (192)
132 PF10503 Esterase_phd: Esteras 83.4 1.3 2.9E-05 32.8 3.1 27 76-102 169-195 (220)
133 KOG1515 Arylacetamide deacetyl 81.3 4 8.7E-05 32.3 5.2 61 75-136 266-334 (336)
134 KOG2565 Predicted hydrolases o 81.3 2 4.3E-05 34.7 3.4 62 75-139 403-465 (469)
135 KOG2521 Uncharacterized conser 79.9 6.8 0.00015 31.2 6.0 64 75-138 224-291 (350)
136 KOG2564 Predicted acetyltransf 79.7 1.5 3.3E-05 34.0 2.2 60 74-137 268-327 (343)
137 PF06028 DUF915: Alpha/beta hy 78.3 4.6 0.0001 30.6 4.5 58 75-134 183-252 (255)
138 COG2939 Carboxypeptidase C (ca 78.0 2.7 5.9E-05 34.9 3.4 60 75-136 424-490 (498)
139 PRK04940 hypothetical protein; 72.5 25 0.00055 25.3 6.8 55 75-135 121-178 (180)
140 KOG2281 Dipeptidyl aminopeptid 70.3 21 0.00046 31.0 6.8 62 75-136 801-866 (867)
141 PF10605 3HBOH: 3HB-oligomer h 69.5 3.7 8.1E-05 35.0 2.2 43 76-118 555-605 (690)
142 PF04301 DUF452: Protein of un 69.1 8.7 0.00019 28.4 3.9 36 80-118 169-204 (213)
143 cd08769 DAP_dppA_2 Peptidase M 64.1 45 0.00097 25.6 7.0 58 72-135 143-201 (270)
144 PF00975 Thioesterase: Thioest 62.8 24 0.00053 25.2 5.3 57 76-134 168-229 (229)
145 PF10230 DUF2305: Uncharacteri 62.0 67 0.0014 24.3 8.3 41 76-116 221-264 (266)
146 PF08133 Nuclease_act: Anticod 58.6 1.6 3.4E-05 20.6 -1.0 14 1-14 10-23 (26)
147 PF03403 PAF-AH_p_II: Platelet 51.2 29 0.00062 27.9 4.3 49 72-123 270-321 (379)
148 PF05576 Peptidase_S37: PS-10 50.5 38 0.00082 27.8 4.8 61 71-135 346-412 (448)
149 PF13709 DUF4159: Domain of un 49.2 66 0.0014 23.5 5.6 59 75-135 52-110 (207)
150 PF12740 Chlorophyllase2: Chlo 45.6 48 0.001 25.3 4.5 48 75-123 153-211 (259)
151 COG4099 Predicted peptidase [G 43.6 9.4 0.0002 30.1 0.4 28 75-102 314-341 (387)
152 COG4553 DepA Poly-beta-hydroxy 42.4 47 0.001 26.2 4.1 64 76-140 339-410 (415)
153 cd00281 DAP_dppA Peptidase M55 42.1 81 0.0018 24.2 5.3 57 73-135 143-200 (265)
154 PF05577 Peptidase_S28: Serine 40.7 22 0.00048 28.7 2.2 39 77-118 377-415 (434)
155 PF11144 DUF2920: Protein of u 40.1 1.2E+02 0.0027 24.7 6.3 60 77-137 294-368 (403)
156 TIGR00976 /NonD putative hydro 40.0 80 0.0017 26.5 5.5 46 69-116 225-272 (550)
157 TIGR00067 glut_race glutamate 36.8 1.5E+02 0.0032 22.3 6.0 46 92-137 11-56 (251)
158 COG1505 Serine proteases of th 35.6 1.4E+02 0.003 25.9 6.0 58 78-136 582-645 (648)
159 COG4814 Uncharacterized protei 34.7 1.6E+02 0.0036 22.7 5.8 59 76-136 216-286 (288)
160 PF01751 Toprim: Toprim domain 34.6 89 0.0019 19.5 4.0 36 91-127 7-42 (100)
161 KOG2918 Carboxymethyl transfer 34.1 1.3E+02 0.0029 23.8 5.4 55 75-136 186-244 (335)
162 PRK00865 glutamate racemase; P 33.8 1.7E+02 0.0037 22.0 5.9 55 78-135 7-61 (261)
163 PRK10252 entF enterobactin syn 33.4 65 0.0014 29.7 4.2 49 73-123 1233-1281(1296)
164 cd08770 DAP_dppA_3 Peptidase M 31.3 1.4E+02 0.003 22.9 5.1 57 73-136 144-201 (263)
165 cd08663 DAP_dppA_1 Peptidase M 29.4 1.8E+02 0.0039 22.4 5.4 57 73-135 144-201 (266)
166 KOG3929 Uncharacterized conser 28.2 1.3E+02 0.0029 23.4 4.4 27 69-95 183-209 (363)
167 PF06500 DUF1100: Alpha/beta h 27.9 62 0.0013 26.5 2.8 62 75-137 188-255 (411)
168 KOG3847 Phospholipase A2 (plat 26.4 2.5E+02 0.0054 22.6 5.7 63 70-135 281-346 (399)
169 PLN02733 phosphatidylcholine-s 26.1 43 0.00094 27.5 1.7 52 80-136 370-421 (440)
170 PF14606 Lipase_GDSL_3: GDSL-l 24.4 1.7E+02 0.0038 21.0 4.3 63 75-144 32-94 (178)
171 cd03145 GAT1_cyanophycinase Ty 24.0 2.9E+02 0.0063 20.1 5.7 37 78-114 1-39 (217)
172 PF10313 DUF2415: Uncharacteri 23.8 40 0.00087 18.3 0.7 14 1-14 18-31 (43)
173 TIGR00696 wecB_tagA_cpsF bacte 23.6 2.1E+02 0.0045 20.4 4.6 34 75-110 47-80 (177)
174 COG0796 MurI Glutamate racemas 23.4 3.3E+02 0.0072 21.0 5.9 46 76-125 5-50 (269)
175 KOG2264 Exostosin EXT1L [Signa 22.9 27 0.00058 29.9 -0.1 21 2-24 748-768 (907)
176 PLN02633 palmitoyl protein thi 21.7 2.8E+02 0.0061 21.9 5.3 38 75-112 24-65 (314)
177 KOG1579 Homocysteine S-methylt 21.5 1.7E+02 0.0037 23.1 4.0 39 79-118 225-263 (317)
178 COG0420 SbcD DNA repair exonuc 21.3 73 0.0016 25.4 2.1 24 70-93 69-92 (390)
179 smart00824 PKS_TE Thioesterase 20.6 57 0.0012 22.3 1.2 57 74-131 151-209 (212)
180 COG3757 Acm Lyzozyme M1 (1,4-b 20.4 3.2E+02 0.007 21.0 5.3 57 90-146 129-190 (269)
181 PRK10439 enterobactin/ferric e 20.0 1.4E+02 0.003 24.2 3.5 39 77-117 350-392 (411)
No 1
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.72 E-value=3.8e-17 Score=132.46 Aligned_cols=136 Identities=40% Similarity=0.897 Sum_probs=105.4
Q ss_pred ccccccCceEEEEEecchhHHHHHHhhhhcCCchhHHHHhhccccchhhhhhHHHhHhccCCCcccHHH-HhccCCCcEE
Q 032179 2 SWYEHLGRCVCFFVCRNHRAWESLLKPLTGRRDLNFIIMDLPRHTHHSAWHSMHNVICGGAKYMDDYLE-SLIENKVKLY 80 (146)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~i~~P~L 80 (146)
+|++|..+..++++|+++..|+.+..++.......++.+.+........++.+.+.+........+..+ .+.++++|||
T Consensus 343 ~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~l~~l~~~I~vPtL 422 (481)
T PLN03087 343 CWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNIICGSGSKLDGYLDHVRDQLKCDVA 422 (481)
T ss_pred HHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHHhchhhhhhhHHHHHHHhCCCCEE
Confidence 588899998888899999999998877766655566666555544444555555555433211122233 3346999999
Q ss_pred EEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 81 VIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 81 ii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
+|||++|.++|++.++.+++.+|++++++++++||+++..|+|++|++.|.+|+...
T Consensus 423 II~Ge~D~ivP~~~~~~la~~iP~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~~ 479 (481)
T PLN03087 423 IFHGGDDELIPVECSYAVKAKVPRARVKVIDDKDHITIVVGRQKEFARELEEIWRRS 479 (481)
T ss_pred EEEECCCCCCCHHHHHHHHHhCCCCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999983499999999999999764
No 2
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.57 E-value=8.9e-15 Score=113.80 Aligned_cols=123 Identities=27% Similarity=0.370 Sum_probs=96.4
Q ss_pred ccccccCceEEEEEecchhHHHHHHhhhhcCCchhHHHHhhccccchhhhhhHHHhHhccCCCcccHHHHhccCC-CcEE
Q 032179 2 SWYEHLGRCVCFFVCRNHRAWESLLKPLTGRRDLNFIIMDLPRHTHHSAWHSMHNVICGGAKYMDDYLESLIENK-VKLY 80 (146)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-~P~L 80 (146)
+|+++..++.+++.+.++..++.....+.+.. ....+...+..+.+.+... .....+.+.++. +|+|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~pvl 268 (326)
T KOG1454|consen 201 LVSEGLLRCLKVVYTDPSRLLEKLLHLLSRPV---------KEHFHRDARLSLFLELLGF---DENLLSLIKKIWKCPVL 268 (326)
T ss_pred heeHhhhcceeeeccccccchhhhhhheeccc---------ccchhhhheeeEEEeccCc---cchHHHhhccccCCceE
Confidence 59999999999999999999999988887764 1111122222222222211 112234566666 9999
Q ss_pred EEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 81 VIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 81 ii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
++||++|+++|.+.++.+.+.+|++++++++++||.+| +|.|+++++.|..|+.+.
T Consensus 269 ii~G~~D~~~p~~~~~~~~~~~pn~~~~~I~~~gH~~h-~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 269 IIWGDKDQIVPLELAEELKKKLPNAELVEIPGAGHLPH-LERPEEVAALLRSFIARL 324 (326)
T ss_pred EEEcCcCCccCHHHHHHHHhhCCCceEEEeCCCCcccc-cCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 899999999999999875
No 3
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.43 E-value=6e-13 Score=99.21 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=64.2
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
+..+.+.++++|||+++|++|.++|.+.++.+.+.+|++++++++++||+++ .|+|+.|++.+.+|-.+
T Consensus 187 ~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~~~~~~i~~~gH~~~-~e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 187 DLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSESYIFAKAAHAPF-ISHPAEFCHLLVALKQR 255 (256)
T ss_pred ccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCCCCeEEEeCCCCCCcc-ccCHHHHHHHHHHHhcc
Confidence 4567788899999999999999999999999999999999999999999998 99999999999999754
No 4
>PLN02965 Probable pheophorbidase
Probab=99.42 E-value=7e-13 Score=99.12 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=62.4
Q ss_pred HhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 71 SLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 71 ~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
.+.++++|+++++|++|.++|+..++.+++.+|++++++++++||+++ .|+|++|++.|.+|++..
T Consensus 188 ~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~a~~~~i~~~GH~~~-~e~p~~v~~~l~~~~~~~ 253 (255)
T PLN02965 188 NPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPPAQTYVLEDSDHSAF-FSVPTTLFQYLLQAVSSL 253 (255)
T ss_pred hhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCcceEEEecCCCCchh-hcCHHHHHHHHHHHHHHh
Confidence 445699999999999999999999999999999999999999999999 999999999999999875
No 5
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.41 E-value=9.2e-13 Score=99.09 Aligned_cols=68 Identities=19% Similarity=0.328 Sum_probs=63.8
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
+....++++++|+|+++|++|.++|++.++.+++.+|++++++++++||+++ .|+|+.|++.|.+|+.
T Consensus 214 ~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~~~~~~i~~agH~~~-~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 214 DVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMPDAQLHVFSRCGHWAQ-WEHADAFNRLVIDFLR 281 (282)
T ss_pred hHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCCCCEEEEeCCCCcCCc-ccCHHHHHHHHHHHhh
Confidence 3456788899999999999999999999999999999999999999999998 9999999999999986
No 6
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.39 E-value=1.7e-12 Score=94.16 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=62.4
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHH
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIW 134 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl 134 (146)
+..+.+.++++|+|+++|++|.++|++..+.+.+.+|++++++++++||+++ .|+|++|++.|.+|+
T Consensus 179 ~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 179 DLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAPHSELYIFAKAAHAPF-LSHAEAFCALLVAFK 245 (245)
T ss_pred cHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCCCCeEEEeCCCCCCcc-ccCHHHHHHHHHhhC
Confidence 4456778899999999999999999999999999999999999999999998 999999999999985
No 7
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.38 E-value=2.2e-12 Score=97.42 Aligned_cols=75 Identities=20% Similarity=0.322 Sum_probs=67.6
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSSADINGTGP 145 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~~~~~~~~~ 145 (146)
.+.+.++++|||+|+|++|+++|++.++.+.+.+|+++++++++ ||+++ .|+|++|++.|.+|+++..+.+.-+|
T Consensus 200 ~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~~~~~~~~~~i~~-gH~~~-~e~p~~~~~~i~~fl~~~~~~~~~~~ 274 (276)
T TIGR02240 200 IHWLHKIQQPTLVLAGDDDPIIPLINMRLLAWRIPNAELHIIDD-GHLFL-ITRAEAVAPIIMKFLAEERQRAVMHP 274 (276)
T ss_pred hhHhhcCCCCEEEEEeCCCCcCCHHHHHHHHHhCCCCEEEEEcC-CCchh-hccHHHHHHHHHHHHHHhhhhccCCC
Confidence 45678899999999999999999999999999999999999985 99998 99999999999999998776655444
No 8
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.36 E-value=2.9e-12 Score=100.79 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=61.4
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHH-----HHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIEC-----SINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~-----~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
+....+.++++|||+|+|++|.++|++. .+.+.+.+|++++++++++||+++ .|+|++|++.|.+|+.+.
T Consensus 283 ~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~-~E~Pe~~~~~I~~FL~~~ 357 (360)
T PLN02679 283 NPIKLIPRISLPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPH-DDRPDLVHEKLLPWLAQL 357 (360)
T ss_pred CHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCcc-ccCHHHHHHHHHHHHHhc
Confidence 3456778899999999999999999873 245667789999999999999998 999999999999999875
No 9
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.35 E-value=3e-12 Score=97.39 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=62.8
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
.+.++++++|||+|+|++|.++|.+.++.+.+.+|++++++++++||+++ .|+|++|++.|.+|+++
T Consensus 227 ~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 293 (294)
T PLN02824 227 EELLPAVKCPVLIAWGEKDPWEPVELGRAYANFDAVEDFIVLPGVGHCPQ-DEAPELVNPLIESFVAR 293 (294)
T ss_pred HHHHhhcCCCeEEEEecCCCCCChHHHHHHHhcCCccceEEeCCCCCChh-hhCHHHHHHHHHHHHhc
Confidence 45678899999999999999999999999999888899999999999999 99999999999999975
No 10
>PRK07581 hypothetical protein; Validated
Probab=99.32 E-value=6.8e-12 Score=97.53 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=65.9
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCC-CCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPN-ANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~-aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
++.+.++++++|||+|+|++|.++|++.++.+++.+|+++++++++ +||+++ .|+|+.+++.|.+|+.+.
T Consensus 266 d~~~~L~~I~~PtLvI~G~~D~~~p~~~~~~l~~~ip~a~l~~i~~~~GH~~~-~~~~~~~~~~~~~~~~~~ 336 (339)
T PRK07581 266 DLAAALGSITAKTFVMPISTDLYFPPEDCEAEAALIPNAELRPIESIWGHLAG-FGQNPADIAFIDAALKEL 336 (339)
T ss_pred CHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHhCCCCeEEEeCCCCCcccc-ccCcHHHHHHHHHHHHHH
Confidence 5677888999999999999999999999999999999999999999 999998 999999999999999874
No 11
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.32 E-value=4e-12 Score=96.77 Aligned_cols=70 Identities=10% Similarity=0.018 Sum_probs=60.0
Q ss_pred HHHhccCCCcEEEEEcCCCCcc-CHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhcCC
Q 032179 69 LESLIENKVKLYVIQGDRDQVI-PIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSSAD 139 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v-~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~~~ 139 (146)
.+.+.++++|||+|||++|.++ +....+.+.+.+|++++++++++||+++ .|+|+++++.|.+|+++...
T Consensus 221 ~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~~~ 291 (295)
T PRK03592 221 AQWLATSDVPKLLINAEPGAILTTGAIRDWCRSWPNQLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRLRL 291 (295)
T ss_pred HHHhccCCCCeEEEeccCCcccCcHHHHHHHHHhhhhcceeeccCcchhhh-hcCHHHHHHHHHHHHHHhcc
Confidence 3556779999999999999999 5455455566788999999999999999 99999999999999998644
No 12
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.30 E-value=1.2e-11 Score=90.59 Aligned_cols=68 Identities=19% Similarity=0.337 Sum_probs=63.2
Q ss_pred HHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 68 YLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 68 ~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
....++++++|+++++|++|.++|++.++.+++.+|+++++.++++||+++ .++|+++.+.|.+|+++
T Consensus 190 ~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~~ 257 (257)
T TIGR03611 190 VSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPNAQLKLLPYGGHASN-VTDPETFNRALLDFLKT 257 (257)
T ss_pred cHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcCCceEEEECCCCCCcc-ccCHHHHHHHHHHHhcC
Confidence 446678899999999999999999999999999999999999999999998 99999999999999863
No 13
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.29 E-value=7.8e-12 Score=99.00 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=65.5
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCc----EEEEeC-CCCCCCccCCCHHHHHHHHHHHHHhcCC
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNA----EVTIVP-NANHNSVILGREKDFTETLEQIWVSSAD 139 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~----~~~~i~-~aGH~~~~~e~p~~~~~~i~~fl~~~~~ 139 (146)
++.+.+++|++|||+|+|++|.++|++.++.+++.+|++ ++++++ ++||+++ +|+|++|++.|.+||+++..
T Consensus 300 d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~-le~p~~~~~~L~~FL~~~~~ 376 (379)
T PRK00175 300 DLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAF-LLDDPRYGRLVRAFLERAAR 376 (379)
T ss_pred CHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhH-hcCHHHHHHHHHHHHHhhhh
Confidence 467888999999999999999999999999999999987 788775 9999998 99999999999999998644
No 14
>PRK06489 hypothetical protein; Provisional
Probab=99.27 E-value=2.2e-11 Score=95.63 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=63.3
Q ss_pred ccHHHHhccCCCcEEEEEcCCCCccCHHHH--HHHHHhCCCcEEEEeCCC----CCCCccCCCHHHHHHHHHHHHHhc
Q 032179 66 DDYLESLIENKVKLYVIQGDRDQVIPIECS--INIRRKVPNAEVTIVPNA----NHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 66 ~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~--~~l~~~~p~~~~~~i~~a----GH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
.+..+.+.+|++|||+|+|++|.++|++.+ +.+++.+|++++++++++ ||+++ ++|++|++.|.+|++++
T Consensus 282 ~d~~~~L~~I~~PvLvI~G~~D~~~p~~~~~~~~la~~ip~a~l~~i~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 282 YNPSPDLEKIKAPVLAINSADDERNPPETGVMEAALKRVKHGRLVLIPASPETRGHGTT--GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred cChHHHHHhCCCCEEEEecCCCcccChhhHHHHHHHHhCcCCeEEEECCCCCCCCcccc--cCHHHHHHHHHHHHHhc
Confidence 345678889999999999999999999976 789999999999999996 99985 69999999999999875
No 15
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.27 E-value=1.1e-11 Score=96.78 Aligned_cols=67 Identities=13% Similarity=0.287 Sum_probs=61.8
Q ss_pred hccCCCcEEEEEcCCCCccCHHHHHHHHHhC-CCcEEEEeCC-CCCCCccCCCHHHHHHHHHHHHHhcCC
Q 032179 72 LIENKVKLYVIQGDRDQVIPIECSINIRRKV-PNAEVTIVPN-ANHNSVILGREKDFTETLEQIWVSSAD 139 (146)
Q Consensus 72 l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~-p~~~~~~i~~-aGH~~~~~e~p~~~~~~i~~fl~~~~~ 139 (146)
++++++|||+++|++|.++|++.++.+.+.+ |+++++++++ +||+++ +|+|++|++.|.+||.++..
T Consensus 273 l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p~a~l~~i~~~aGH~~~-lE~Pe~~~~~l~~FL~~~~~ 341 (343)
T PRK08775 273 PEAIRVPTVVVAVEGDRLVPLADLVELAEGLGPRGSLRVLRSPYGHDAF-LKETDRIDAILTTALRSTGE 341 (343)
T ss_pred hhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCCCCeEEEEeCCccHHHH-hcCHHHHHHHHHHHHHhccc
Confidence 5679999999999999999999999999988 6999999985 999998 99999999999999988654
No 16
>PLN02578 hydrolase
Probab=99.25 E-value=3.2e-11 Score=94.63 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=62.2
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
+..+.++++++|+++|||++|.++|.+.++.+.+.+|+++++++ ++||+++ .|+|++|++.|.+|++
T Consensus 287 ~~~~~l~~i~~PvLiI~G~~D~~v~~~~~~~l~~~~p~a~l~~i-~~GH~~~-~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 287 TLDSLLSKLSCPLLLLWGDLDPWVGPAKAEKIKAFYPDTTLVNL-QAGHCPH-DEVPEQVNKALLEWLS 353 (354)
T ss_pred CHHHHhhcCCCCEEEEEeCCCCCCCHHHHHHHHHhCCCCEEEEe-CCCCCcc-ccCHHHHHHHHHHHHh
Confidence 34567888999999999999999999999999999999999999 5999998 9999999999999986
No 17
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.25 E-value=1.1e-11 Score=96.93 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=62.1
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEE-----EeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVT-----IVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~-----~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
++.+.+++|++|||+|+|++|.++|++.++.+++.+|+++++ +++++||+++ +|+|++|++.|.+||.
T Consensus 279 ~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~-le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 279 SLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESPYGHDAF-LVETDQVEELIRGFLR 351 (351)
T ss_pred CHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCCCCcchh-hcCHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999988765 5679999999 9999999999999974
No 18
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.25 E-value=3.2e-11 Score=90.02 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=61.6
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
...++++++|+|+++|++|.++|.+.++.+.+.+|++++++++++||+++ .|.|+++++.|.+|++
T Consensus 213 ~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 213 NRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVPTATLHVVPGGGHLVH-EEQADGVVGLILQAAE 278 (278)
T ss_pred hhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhccCCeEEEECCCCCccc-ccCHHHHHHHHHHHhC
Confidence 35677899999999999999999999999999999999999999999998 9999999999999974
No 19
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.22 E-value=2.5e-11 Score=92.83 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=59.4
Q ss_pred HHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcE---EEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 70 ESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAE---VTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 70 ~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~---~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
..+.++++||++|+|++|.++|... +.+.+.+|+++ +.+++++||+++ .|+|++|++.|.+|++.
T Consensus 233 ~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~~~~~~~~i~~~gH~~~-~e~p~~~~~~l~~fl~~ 300 (302)
T PRK00870 233 AVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPGAAGQPHPTIKGAGHFLQ-EDSGEELAEAVLEFIRA 300 (302)
T ss_pred HhhhcCCCceEEEecCCCCcccCch-HHHHhhcccccccceeeecCCCccch-hhChHHHHHHHHHHHhc
Confidence 4567899999999999999999876 88999999876 889999999998 99999999999999975
No 20
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.21 E-value=3.5e-11 Score=91.76 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=54.6
Q ss_pred CCcEEEEEcCCCCccCH-HHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 76 KVKLYVIQGDRDQVIPI-ECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~-~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
++|||+|+|++|.++++ ..++.+.+.+|++++++++++||+++ .|+|++|++.|.+|+.
T Consensus 227 ~~PtliI~G~~D~~~~~~~~~~~~~~~ip~~~~~~i~~aGH~~~-~e~Pe~~~~~i~~~~~ 286 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTILPRLRATFPDHVLVELPNAKHFIQ-EDAPDRIAAAIIERFG 286 (286)
T ss_pred CCCeEEEecCCCcccCcHHHHHHHHHhcCCCeEEEcCCCccccc-ccCHHHHHHHHHHhcC
Confidence 89999999999998755 46789999999999999999999999 9999999999999973
No 21
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.21 E-value=5.8e-11 Score=87.98 Aligned_cols=64 Identities=9% Similarity=0.135 Sum_probs=60.5
Q ss_pred hccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 72 LIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 72 l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
++.+++|+|+|+|++|..++.+..+.+.+.+|++++++++++||+++ .++|+++++.|.+|+.+
T Consensus 191 ~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 191 IPAWPHPALFIRGGNSPYVTEAYRDDLLAQFPQARAHVIAGAGHWVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred cCCCCCCeEEEECCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCeee-ccCHHHHHHHHHHHHhc
Confidence 45688999999999999999999999999999999999999999998 99999999999999974
No 22
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.19 E-value=9.6e-11 Score=85.04 Aligned_cols=68 Identities=25% Similarity=0.335 Sum_probs=62.4
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
+....+.++++|+++++|++|.++|.+..+.+.+.+|+.++++++++||+++ .++|+++.+.+.+|+.
T Consensus 184 ~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 184 DFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVPGARFAEIRGAGHIPC-VEQPEAFNAALRDFLR 251 (251)
T ss_pred cHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCCCceEEEECCCCCccc-ccChHHHHHHHHHHhC
Confidence 3456677899999999999999999999999999999999999999999998 9999999999999974
No 23
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.18 E-value=1.1e-10 Score=86.57 Aligned_cols=67 Identities=16% Similarity=0.309 Sum_probs=60.3
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
+..+.+.++++|+++++|++|.+ ++...+.+.+.+|++++++++++||+++ .|+|++|++.|.+|++
T Consensus 222 ~~~~~l~~i~~P~lii~G~~D~~-~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 222 DITDKLSEIKVPTLLTVGEFDTM-TPEAAREMQELIAGSRLVVFPDGSHMTM-IEDPEVYFKLLSDFIR 288 (288)
T ss_pred CHHHHhhccCCCEEEEecCCCcc-CHHHHHHHHHhccCCeEEEeCCCCCCcc-cCCHHHHHHHHHHHhC
Confidence 44567788999999999999984 6788899999999999999999999998 9999999999999984
No 24
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.18 E-value=1e-10 Score=91.50 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=60.6
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhC--CCcEEEEeCCCCCCCccCCCHHH----HHHHHHHHHHhc
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKV--PNAEVTIVPNANHNSVILGREKD----FTETLEQIWVSS 137 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~--p~~~~~~i~~aGH~~~~~e~p~~----~~~~i~~fl~~~ 137 (146)
...+.++++|+|+|||++|.++|++.++.+++.+ +++++++++++||+++ .|+|++ +.+.|.+||.+.
T Consensus 272 ~~~l~~i~~P~Lii~G~~D~vv~~~~~~~l~~~~~~~~~~l~~i~~~gH~l~-~e~p~~~~~~v~~~i~~wL~~~ 345 (349)
T PLN02385 272 EMQLEEVSLPLLILHGEADKVTDPSVSKFLYEKASSSDKKLKLYEDAYHSIL-EGEPDEMIFQVLDDIISWLDSH 345 (349)
T ss_pred HHhcccCCCCEEEEEeCCCCccChHHHHHHHHHcCCCCceEEEeCCCeeecc-cCCChhhHHHHHHHHHHHHHHh
Confidence 4567789999999999999999999999999987 5689999999999998 899987 778889999864
No 25
>PHA02857 monoglyceride lipase; Provisional
Probab=99.11 E-value=3.5e-10 Score=85.17 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=59.6
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhC-CCcEEEEeCCCCCCCccCCCH---HHHHHHHHHHHHh
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKV-PNAEVTIVPNANHNSVILGRE---KDFTETLEQIWVS 136 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~-p~~~~~~i~~aGH~~~~~e~p---~~~~~~i~~fl~~ 136 (146)
...+.++++|||+++|++|.++|++.++.+.+.+ +++++.+++++||+++ .|++ +++.+.+.+||..
T Consensus 202 ~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~~~~~~~~~~~gH~~~-~e~~~~~~~~~~~~~~~l~~ 272 (276)
T PHA02857 202 RKIIPKIKTPILILQGTNNEISDVSGAYYFMQHANCNREIKIYEGAKHHLH-KETDEVKKSVMKEIETWIFN 272 (276)
T ss_pred HHhcccCCCCEEEEecCCCCcCChHHHHHHHHHccCCceEEEeCCCccccc-CCchhHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999887 4789999999999998 7766 4688899999987
No 26
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.09 E-value=3.7e-10 Score=89.97 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=63.7
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC----CcEEEEeCC-CCCCCccCCCHHHHHHHHHHHHHh
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP----NAEVTIVPN-ANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p----~~~~~~i~~-aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
++.+.++++++|||+|+|++|.++|++.++.+++.+| +++++++++ +||+++ +++|++|++.|.+|+++
T Consensus 314 dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~-le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 314 SLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKIYEFLNR 387 (389)
T ss_pred CHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchh-hcCHHHHHHHHHHHHcc
Confidence 5677888999999999999999999999999999986 689999986 999999 99999999999999975
No 27
>PLN02511 hydrolase
Probab=99.05 E-value=1.6e-10 Score=91.91 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=62.9
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHH-HHHHHhCCCcEEEEeCCCCCCCccCCCHHH------HHHHHHHHHHhcCCCC
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECS-INIRRKVPNAEVTIVPNANHNSVILGREKD------FTETLEQIWVSSADIN 141 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~-~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~------~~~~i~~fl~~~~~~~ 141 (146)
...+++|++|||+|+|++|+++|.+.. ..+.+.+|++++++++++||+.+ .|+|+. +.+.+.+|+.......
T Consensus 291 ~~~L~~I~vPtLiI~g~dDpi~p~~~~~~~~~~~~p~~~l~~~~~gGH~~~-~E~p~~~~~~~w~~~~i~~Fl~~~~~~~ 369 (388)
T PLN02511 291 SDSIKHVRVPLLCIQAANDPIAPARGIPREDIKANPNCLLIVTPSGGHLGW-VAGPEAPFGAPWTDPVVMEFLEALEEGK 369 (388)
T ss_pred hhhhccCCCCeEEEEcCCCCcCCcccCcHhHHhcCCCEEEEECCCcceecc-ccCCCCCCCCccHHHHHHHHHHHHHHhc
Confidence 457888999999999999999998765 45677889999999999999999 999876 5899999998765444
Q ss_pred CCC
Q 032179 142 GTG 144 (146)
Q Consensus 142 ~~~ 144 (146)
..+
T Consensus 370 ~~~ 372 (388)
T PLN02511 370 SST 372 (388)
T ss_pred ccc
Confidence 433
No 28
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.05 E-value=7.9e-10 Score=85.58 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=59.6
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC--CcEEEEeCCCCCCCccCCCHHH----HHHHHHHHHHhcC
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP--NAEVTIVPNANHNSVILGREKD----FTETLEQIWVSSA 138 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p--~~~~~~i~~aGH~~~~~e~p~~----~~~~i~~fl~~~~ 138 (146)
...+.++++|+|++||++|.++|++.++.+++.++ ++++++++++||+++ .++|+. +.+.+.+||.+..
T Consensus 244 ~~~l~~i~~PvLii~G~~D~ivp~~~~~~l~~~i~~~~~~l~~~~~a~H~~~-~e~pd~~~~~~~~~i~~fl~~~~ 318 (330)
T PLN02298 244 GKKLKDVSIPFIVLHGSADVVTDPDVSRALYEEAKSEDKTIKIYDGMMHSLL-FGEPDENIEIVRRDILSWLNERC 318 (330)
T ss_pred HHhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHhccCCceEEEcCCcEeeee-cCCCHHHHHHHHHHHHHHHHHhc
Confidence 35667899999999999999999999999988875 789999999999998 888754 6778888988753
No 29
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.05 E-value=7.3e-10 Score=88.10 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=56.2
Q ss_pred cCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 74 ENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 74 ~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
++++|||+|||+.|.+++.+.++.+++. +++++++++++||+++ .|+|+++++.|.+|+.
T Consensus 323 ~i~vPvLiI~G~~D~~v~~~~~~~~a~~-~~a~l~vIp~aGH~~~-~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 323 NWKTPITVCWGLRDRWLNYDGVEDFCKS-SQHKLIELPMAGHHVQ-EDCGEELGGIISGILS 382 (383)
T ss_pred cCCCCEEEEeeCCCCCcCHHHHHHHHHh-cCCeEEEECCCCCCcc-hhCHHHHHHHHHHHhh
Confidence 5799999999999999999999988887 5899999999999998 9999999999999986
No 30
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.03 E-value=5.5e-10 Score=85.75 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=60.9
Q ss_pred ccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 73 IENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 73 ~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
...+.|||+++|.++.+++.+.-..|.+.+|+++++.++++|||+| .|+|+.|.+.|.+|+...
T Consensus 250 ~~~~~pvlfi~g~~S~fv~~~~~~~~~~~fp~~e~~~ld~aGHwVh-~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 250 GPYTGPVLFIKGLQSKFVPDEHYPRMEKIFPNVEVHELDEAGHWVH-LEKPEEFIESISEFLEEP 313 (315)
T ss_pred cccccceeEEecCCCCCcChhHHHHHHHhccchheeecccCCceee-cCCHHHHHHHHHHHhccc
Confidence 5578999999999999999999999999999999999999999999 999999999999999875
No 31
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.02 E-value=1e-09 Score=79.40 Aligned_cols=66 Identities=20% Similarity=0.344 Sum_probs=58.5
Q ss_pred HHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 68 YLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 68 ~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
..+.+.++++|+++++|++|..++ +..+.+.+..|++++++++++||+++ .|+|+++.+.|.+|+.
T Consensus 186 ~~~~~~~~~~P~l~i~g~~D~~~~-~~~~~~~~~~~~~~~~~~~~~gH~~~-~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 186 LWPKLQALTIPVLYLCGEKDEKFV-QIAKEMQKLLPNLTLVIIANAGHNIH-LENPEAFAKILLAFLE 251 (251)
T ss_pred hHHHhhCCCCceEEEeeCcchHHH-HHHHHHHhcCCCCcEEEEcCCCCCcC-ccChHHHHHHHHHHhC
Confidence 345677899999999999998764 66788888899999999999999998 9999999999999983
No 32
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.02 E-value=1e-09 Score=80.73 Aligned_cols=63 Identities=24% Similarity=0.379 Sum_probs=53.2
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
+..+.+.++++|+++++|++|..+. .+.+. +++++++++++||+++ .|+|++|++.|.+|+..
T Consensus 179 ~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~-~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 179 DLRPALQALTFPFYYLCGERDSKFQ-----ALAQQ-LALPLHVIPNAGHNAH-RENPAAFAASLAQILRL 241 (242)
T ss_pred cHHHHhhccCCCeEEEEeCCcchHH-----HHHHH-hcCeEEEeCCCCCchh-hhChHHHHHHHHHHHhh
Confidence 4567888999999999999998552 23333 3899999999999998 99999999999999974
No 33
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.02 E-value=4.6e-10 Score=80.06 Aligned_cols=62 Identities=34% Similarity=0.574 Sum_probs=56.9
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHH
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTET 129 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~ 129 (146)
+....++++++|+++++|++|.+++.+..+.+.+.+|++++++++++||+++ .|+|++|++.
T Consensus 167 ~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~p~~~~~a 228 (228)
T PF12697_consen 167 DLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKLPNAELVVIPGAGHFLF-LEQPDEVAEA 228 (228)
T ss_dssp HHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHSTTEEEEEETTSSSTHH-HHSHHHHHHH
T ss_pred cccccccccCCCeEEeecCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCccH-HHCHHHHhcC
Confidence 4456778899999999999999999999999999999999999999999998 9999998863
No 34
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.00 E-value=1.5e-09 Score=86.72 Aligned_cols=70 Identities=24% Similarity=0.262 Sum_probs=58.8
Q ss_pred ccHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC-CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 66 DDYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP-NAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 66 ~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p-~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
.+....+.++++||++|+|++|.+.+ ...+.+.+..+ .+++++++++||+++ .|+|++|++.|.+|++..
T Consensus 315 ~~~~~~l~~I~vP~liI~G~~D~i~~-~~~~~~~~~~~~~~~~~~i~~aGH~~~-~E~P~~f~~~l~~~~~~~ 385 (402)
T PLN02894 315 KPLLESASEWKVPTTFIYGRHDWMNY-EGAVEARKRMKVPCEIIRVPQGGHFVF-LDNPSGFHSAVLYACRKY 385 (402)
T ss_pred chHhhhcccCCCCEEEEEeCCCCCCc-HHHHHHHHHcCCCCcEEEeCCCCCeee-ccCHHHHHHHHHHHHHHh
Confidence 34556788899999999999998765 55566666654 689999999999998 999999999999999864
No 35
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=98.99 E-value=8.1e-10 Score=79.86 Aligned_cols=64 Identities=25% Similarity=0.447 Sum_probs=59.2
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHH
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLE 131 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~ 131 (146)
+....+.++++|+|+++|++|.++|++....+.+.+|++++++++++||+.+ .+.|+++++.|.
T Consensus 166 ~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~GH~~~-~~~~~~~~~~i~ 229 (230)
T PF00561_consen 166 DPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIPNSQLVLIEGSGHFAF-LEGPDEFNEIII 229 (230)
T ss_dssp HHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHSTTEEEEEETTCCSTHH-HHSHHHHHHHHH
T ss_pred cccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCEEEECCCCChHHH-hcCHHhhhhhhc
Confidence 3456777899999999999999999999999999999999999999999998 999999999875
No 36
>PRK10749 lysophospholipase L2; Provisional
Probab=98.99 E-value=1.3e-09 Score=84.70 Aligned_cols=67 Identities=9% Similarity=0.156 Sum_probs=57.0
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhC-------CCcEEEEeCCCCCCCccCCCH---HHHHHHHHHHHHh
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKV-------PNAEVTIVPNANHNSVILGRE---KDFTETLEQIWVS 136 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~-------p~~~~~~i~~aGH~~~~~e~p---~~~~~~i~~fl~~ 136 (146)
...+.++++|+|+|||++|.+++++.++.+++.+ +++++++++++||.++ .|.+ +.+.+.|.+|+.+
T Consensus 252 ~~~~~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~-~E~~~~r~~v~~~i~~fl~~ 328 (330)
T PRK10749 252 LAGAGDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEIL-FEKDAMRSVALNAIVDFFNR 328 (330)
T ss_pred HhhccCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhh-hCCcHHHHHHHHHHHHHHhh
Confidence 3456779999999999999999999999998876 3568999999999998 7775 5677888888865
No 37
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=98.98 E-value=7.1e-10 Score=80.37 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=65.0
Q ss_pred HHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 68 YLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 68 ~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
.+-.+.+++|||||+||+.|++++..++--+....+.+++.++|..+|..+ +..+++|++.+.+|+.+.
T Consensus 208 Cr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~~a~~~~~peGkHn~h-Lrya~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 208 CRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKSLAKVEIHPEGKHNFH-LRYAKEFNKLVLDFLKST 276 (277)
T ss_pred HhhhcccccCCeeEeeCCcCCCCCCCCccchhhhcccceEEEccCCCccee-eechHHHHHHHHHHHhcc
Confidence 456788999999999999999999999999999999999999999999999 999999999999999763
No 38
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.96 E-value=2.1e-09 Score=98.34 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=62.7
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCC------------cEEEEeCCCCCCCccCCCHHHHHHHHHHHH
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPN------------AEVTIVPNANHNSVILGREKDFTETLEQIW 134 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~------------~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl 134 (146)
+..+.+.++++|||+|+|++|.+++ ..++.+.+.+|+ +++++++++||+++ .|+|++|++.|.+|+
T Consensus 1559 dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~-lE~Pe~f~~~I~~FL 1636 (1655)
T PLN02980 1559 SLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVH-LENPLPVIRALRKFL 1636 (1655)
T ss_pred hHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccccccceEEEEECCCCCchH-HHCHHHHHHHHHHHH
Confidence 4567889999999999999999775 677788888776 48999999999999 999999999999999
Q ss_pred HhcCCC
Q 032179 135 VSSADI 140 (146)
Q Consensus 135 ~~~~~~ 140 (146)
.+....
T Consensus 1637 ~~~~~~ 1642 (1655)
T PLN02980 1637 TRLHNS 1642 (1655)
T ss_pred Hhcccc
Confidence 986544
No 39
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=98.94 E-value=3.5e-09 Score=84.57 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=60.5
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC--CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP--NAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p--~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
.+.+.++++|+|++||++|.++|++.++.+++.++ ++++.++++++|.++..+.++++.+.+.+|+.+.
T Consensus 317 ~~~L~~I~vPvLIi~G~~D~vvp~~~a~~l~~~~~~~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~ 387 (395)
T PLN02652 317 TRNFKSVTVPFMVLHGTADRVTDPLASQDLYNEAASRHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKR 387 (395)
T ss_pred HhhcccCCCCEEEEEeCCCCCCCHHHHHHHHHhcCCCCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999998865 4789999999999973338999999999999864
No 40
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=98.91 E-value=5.3e-09 Score=79.42 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=57.5
Q ss_pred ccC-CCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 73 IEN-KVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 73 ~~i-~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
..+ ++|+++|+|++|.++|++..+.+.+.+|+++++.++ +||.++ +++|+++.+.|.++....
T Consensus 207 ~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~~~~~~l~-~gH~p~-ls~P~~~~~~i~~~a~~~ 270 (273)
T PLN02211 207 GDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPPSQVYELE-SDHSPF-FSTPFLLFGLLIKAAASV 270 (273)
T ss_pred cccCccceEEEEeCCCCCCCHHHHHHHHHhCCccEEEEEC-CCCCcc-ccCHHHHHHHHHHHHHHh
Confidence 344 899999999999999999999999999999999997 899999 999999999999987653
No 41
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=98.90 E-value=4.6e-09 Score=80.70 Aligned_cols=63 Identities=19% Similarity=0.391 Sum_probs=51.3
Q ss_pred HHHhccC-CCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 69 LESLIEN-KVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 69 ~~~l~~i-~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
...+.++ ++|+|+|||++|.++|.+.++.+++.+|++++++++++||+++. |+ ..+.|.+|+.
T Consensus 240 ~~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~~~~~~~~~~~gH~~~~---~~-~~~~i~~~~~ 303 (306)
T TIGR01249 240 LDNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAFPEAELKVTNNAGHSAFD---PN-NLAALVHALE 303 (306)
T ss_pred HHhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCCCC---hH-HHHHHHHHHH
Confidence 4456667 69999999999999999999999999999999999999999972 22 3344555544
No 42
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.89 E-value=6.8e-09 Score=81.08 Aligned_cols=67 Identities=21% Similarity=0.354 Sum_probs=57.9
Q ss_pred ccHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 66 DDYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 66 ~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
.++...+.++++|+|+++|++|.++|++.++.+ .+++++.+++++||+++ .++|+++.+.|.+|+.+
T Consensus 304 ~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l---~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 304 VDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGL---PDGVAVHVLPGAGHMPQ-MEAAADVNRLLAEFLGK 370 (371)
T ss_pred hhHHHHHhcCCCCEEEEEECCCCccCHHHHhhc---cCCCeEEEeCCCCCChh-hhCHHHHHHHHHHHhcc
Confidence 345567788999999999999999998876544 35789999999999998 99999999999999964
No 43
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=98.82 E-value=1.1e-08 Score=78.72 Aligned_cols=66 Identities=20% Similarity=0.284 Sum_probs=58.1
Q ss_pred HhccCCCcEEEEEcCCCCccCHH-HHHHHHHhCCCc-EEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 71 SLIENKVKLYVIQGDRDQVIPIE-CSINIRRKVPNA-EVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 71 ~l~~i~~P~Lii~G~~D~~v~~~-~~~~l~~~~p~~-~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
.+.++++|+++|+|+.|.+.+.. .++...+.+|+. +.++++++||+++ .|+|+++++.+.+|+.+.
T Consensus 253 ~~~~i~iPv~fi~G~~D~v~~~p~~~~~~rk~vp~l~~~vv~~~~gH~vq-qe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 253 ALAKITIPVLFIWGDLDPVLPYPIFGELYRKDVPRLTERVVIEGIGHFVQ-QEKPQEVNQAILGFINSF 320 (322)
T ss_pred cccccccceEEEEecCcccccchhHHHHHHHhhccccceEEecCCccccc-ccCHHHHHHHHHHHHHhh
Confidence 45679999999999999998776 566677788876 7889999999998 999999999999999874
No 44
>PRK05855 short chain dehydrogenase; Validated
Probab=98.72 E-value=2.2e-08 Score=82.43 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=58.8
Q ss_pred hccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhcC
Q 032179 72 LIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSSA 138 (146)
Q Consensus 72 l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~~ 138 (146)
+..+++|+|+|+|++|.++|+...+.+++.+|+.++++++ +||+++ .|+|++|.+.|.+|+....
T Consensus 229 ~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl~~~~ 293 (582)
T PRK05855 229 ERYTDVPVQLIVPTGDPYVRPALYDDLSRWVPRLWRREIK-AGHWLP-MSHPQVLAAAVAEFVDAVE 293 (582)
T ss_pred cCCccCceEEEEeCCCcccCHHHhccccccCCcceEEEcc-CCCcch-hhChhHHHHHHHHHHHhcc
Confidence 3448999999999999999999999999889998888886 799998 9999999999999998753
No 45
>PRK10985 putative hydrolase; Provisional
Probab=98.63 E-value=1.1e-07 Score=73.69 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=58.2
Q ss_pred HHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCH-----HHHHHHHHHHHHhc
Q 032179 68 YLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGRE-----KDFTETLEQIWVSS 137 (146)
Q Consensus 68 ~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p-----~~~~~~i~~fl~~~ 137 (146)
..+.++++++|+++|+|++|++++++....+.+..|++++++++++||+.+ +|.. ...-+.+.+|+...
T Consensus 247 ~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~GH~~~-~~g~~~~~~~w~~~~~~~~~~~~ 320 (324)
T PRK10985 247 ALPLLNQIRKPTLIIHAKDDPFMTHEVIPKPESLPPNVEYQLTEHGGHVGF-VGGTLLKPQMWLEQRIPDWLTTY 320 (324)
T ss_pred hHHHHhCCCCCEEEEecCCCCCCChhhChHHHHhCCCeEEEECCCCCceee-CCCCCCCCCccHHHHHHHHHHHh
Confidence 346778899999999999999999998888888889999999999999998 6632 35677788888654
No 46
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.62 E-value=2.3e-07 Score=60.78 Aligned_cols=62 Identities=18% Similarity=0.341 Sum_probs=55.2
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
...|+|++.++.|+++|.+.++.+++.+++++++++++.||... ...-.-..+.+.+||.+-
T Consensus 33 ~~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s~lvt~~g~gHg~~-~~~s~C~~~~v~~yl~~G 94 (103)
T PF08386_consen 33 GAPPILVLGGTHDPVTPYEGARAMAARLPGSRLVTVDGAGHGVY-AGGSPCVDKAVDDYLLDG 94 (103)
T ss_pred CCCCEEEEecCcCCCCcHHHHHHHHHHCCCceEEEEeccCccee-cCCChHHHHHHHHHHHcC
Confidence 45899999999999999999999999999999999999999997 444456788889999864
No 47
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.59 E-value=8.6e-08 Score=71.66 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=61.4
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCc-EEEEeCCCCCCCccCCCHHHHHHHHHHHHHhcCCC
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNA-EVTIVPNANHNSVILGREKDFTETLEQIWVSSADI 140 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~-~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~~~~ 140 (146)
.+.++.+++|+|++||++|.++|..++.++.+..+++ +-.++.|+||.- ++...++.+.+.+|+......
T Consensus 185 i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~~epl~v~g~gH~~--~~~~~~yi~~l~~f~~~~~~~ 255 (258)
T KOG1552|consen 185 IEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEKVEPLWVKGAGHND--IELYPEYIEHLRRFISSVLPS 255 (258)
T ss_pred cCcceeccCCEEEEecccCceecccccHHHHHhccccCCCcEEecCCCcc--cccCHHHHHHHHHHHHHhccc
Confidence 5667779999999999999999999999999998865 888999999997 577788999999999876443
No 48
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.59 E-value=8e-08 Score=69.97 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=52.3
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCC----CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVP----NAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p----~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
++.|+|++||++|..||++.+..+.+.+. +++++++|++||.....+......+.+.+|+++.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~ 209 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKY 209 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 78999999999999999999999977653 5899999999996653456667888889998764
No 49
>COG1647 Esterase/lipase [General function prediction only]
Probab=98.58 E-value=1.1e-07 Score=69.73 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=61.6
Q ss_pred HHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC--CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 68 YLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP--NAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 68 ~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p--~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
....+..|.+||+++.|.+|.++|.+.++.+.+.+- +.++.+++++||.+...+..+.+.+.+..||+.
T Consensus 173 ~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 173 ARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESDDKELKWLEGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred HHhhhhhcccchhheecccCCCCCHHHHHHHHHhccCCcceeEEEccCCceeecchhHHHHHHHHHHHhhC
Confidence 356778899999999999999999999999999864 678999999999998677889999999999863
No 50
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=98.58 E-value=2.4e-07 Score=74.47 Aligned_cols=60 Identities=12% Similarity=0.014 Sum_probs=55.1
Q ss_pred ccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 73 IENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 73 ~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
.++++|+|+|||++|.++|++.++.+++.+|+++++++|++ ++ .+.++++.+.+.+||.+
T Consensus 352 ~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~~~~l~~i~~~---~~-~e~~~~~~~~i~~wL~~ 411 (414)
T PRK05077 352 RRCPTPMLSGYWKNDPFSPEEDSRLIASSSADGKLLEIPFK---PV-YRNFDKALQEISDWLED 411 (414)
T ss_pred cCCCCcEEEEecCCCCCCCHHHHHHHHHhCCCCeEEEccCC---Cc-cCCHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999986 44 67999999999999976
No 51
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=98.55 E-value=4.9e-07 Score=70.58 Aligned_cols=64 Identities=13% Similarity=0.207 Sum_probs=55.1
Q ss_pred HhccC--CCcEEEEEcCCCCccCHHHHHHHHHhC--CCcEEEEeCCCCCCCccCC-CHHHHHHHHHHHHH
Q 032179 71 SLIEN--KVKLYVIQGDRDQVIPIECSINIRRKV--PNAEVTIVPNANHNSVILG-REKDFTETLEQIWV 135 (146)
Q Consensus 71 ~l~~i--~~P~Lii~G~~D~~v~~~~~~~l~~~~--p~~~~~~i~~aGH~~~~~e-~p~~~~~~i~~fl~ 135 (146)
.+..+ ++|+|+++|++|.+++++.++.+++.+ +++++.++++++|.++ .| .++++.+.|.+||.
T Consensus 263 ~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~~~~l~~~~g~~H~i~-~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 263 DIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSISNKELHTLEDMDHVIT-IEPGNEEVLKKIIEWIS 331 (332)
T ss_pred hHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccCCCcEEEEECCCCCCCc-cCCCHHHHHHHHHHHhh
Confidence 34445 799999999999999999999998765 5789999999999998 65 47889999999985
No 52
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.49 E-value=6.4e-07 Score=69.68 Aligned_cols=69 Identities=25% Similarity=0.345 Sum_probs=56.0
Q ss_pred cHHHHhccCC--CcEEEEEcCCCCccCHHHHHHHHHh--CCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 67 DYLESLIENK--VKLYVIQGDRDQVIPIECSINIRRK--VPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 67 ~~~~~l~~i~--~P~Lii~G~~D~~v~~~~~~~l~~~--~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
.....+..++ +|+++|+|++|- ++...+..+... ...++.+++++|||... +++|+.|++.+.+++...
T Consensus 292 Pm~~r~~~l~~~~pv~fiyG~~dW-mD~~~g~~~~~~~~~~~~~~~~v~~aGHhvy-lDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 292 PMIQRLRELKKDVPVTFIYGDRDW-MDKNAGLEVTKSLMKEYVEIIIVPGAGHHVY-LDNPEFFNQIVLEECDKV 364 (365)
T ss_pred hHHHHHHhhccCCCEEEEecCccc-ccchhHHHHHHHhhcccceEEEecCCCceee-cCCHHHHHHHHHHHHhcc
Confidence 3455666655 999999999998 555666667664 34689999999999999 999999999999998753
No 53
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.49 E-value=6.8e-07 Score=63.99 Aligned_cols=65 Identities=26% Similarity=0.450 Sum_probs=56.0
Q ss_pred HHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCC-cEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 70 ESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPN-AEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 70 ~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~-~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
..+.++++|+++++|++|.+.|......+.+.+++ .++++++++||+++ .++|+.|.+.+.+|++
T Consensus 215 ~~~~~~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~p~~~~~~i~~~~~ 280 (282)
T COG0596 215 AALARITVPTLIIHGEDDPVVPAELARRLAAALPNDARLVVIPGAGHFPH-LEAPEAFAAALLAFLE 280 (282)
T ss_pred hhhccCCCCeEEEecCCCCcCCHHHHHHHHhhCCCCceEEEeCCCCCcch-hhcHHHHHHHHHHHHh
Confidence 45666889999999999977777766777788885 99999999999998 9999999999988554
No 54
>PRK13604 luxD acyl transferase; Provisional
Probab=98.48 E-value=7.8e-07 Score=68.73 Aligned_cols=62 Identities=8% Similarity=0.152 Sum_probs=52.2
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC--CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP--NAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p--~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
.+.++++++|+|+|||+.|.+||++.++.+++.++ +.++++++|++|... |++- .+..|.++
T Consensus 195 i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s~~kkl~~i~Ga~H~l~--~~~~----~~~~~~~~ 258 (307)
T PRK13604 195 INKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRSEQCKLYSLIGSSHDLG--ENLV----VLRNFYQS 258 (307)
T ss_pred HHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhccCCcEEEEeCCCccccC--cchH----HHHHHHHH
Confidence 46677789999999999999999999999999875 789999999999985 5654 45566654
No 55
>PRK10566 esterase; Provisional
Probab=98.40 E-value=1.2e-06 Score=64.98 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=50.2
Q ss_pred HHhccC-CCcEEEEEcCCCCccCHHHHHHHHHhCCC------cEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 70 ESLIEN-KVKLYVIQGDRDQVIPIECSINIRRKVPN------AEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 70 ~~l~~i-~~P~Lii~G~~D~~v~~~~~~~l~~~~p~------~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
..+.++ ++|+|++||++|.++|++.++.+++.++. .++.+++++||... + ...+.+.+||++
T Consensus 179 ~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~----~-~~~~~~~~fl~~ 247 (249)
T PRK10566 179 HQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT----P-EALDAGVAFFRQ 247 (249)
T ss_pred hhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC----H-HHHHHHHHHHHh
Confidence 345555 79999999999999999999999987752 57788999999864 2 356778888875
No 56
>PLN02872 triacylglycerol lipase
Probab=98.40 E-value=1.3e-06 Score=69.82 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=57.4
Q ss_pred hccC--CCcEEEEEcCCCCccCHHHHHHHHHhCCC-cEEEEeCCCCCCCc--cCCCHHHHHHHHHHHHHhc
Q 032179 72 LIEN--KVKLYVIQGDRDQVIPIECSINIRRKVPN-AEVTIVPNANHNSV--ILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 72 l~~i--~~P~Lii~G~~D~~v~~~~~~~l~~~~p~-~~~~~i~~aGH~~~--~~e~p~~~~~~i~~fl~~~ 137 (146)
++++ ++|+++++|++|.+++++.++.+.+.+|+ ++++.++++||..+ ..+.|+.+.+.|.+|+.+.
T Consensus 319 l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~ 389 (395)
T PLN02872 319 LSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPSKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSL 389 (395)
T ss_pred cccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCCccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHh
Confidence 4556 68999999999999999999999999997 68889999999632 2589999999999999864
No 57
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.36 E-value=3.9e-07 Score=75.26 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=52.3
Q ss_pred ccHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHH
Q 032179 66 DDYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREK 124 (146)
Q Consensus 66 ~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~ 124 (146)
.+....+++|++|+|+++|++|.++|.+.+..+.+.+++.+..+++++||.++ +++|.
T Consensus 405 ~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~~~~~~vL~~sGHi~~-ienPp 462 (532)
T TIGR01838 405 CGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLGGPKTFVLGESGHIAG-VVNPP 462 (532)
T ss_pred CCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCCCCEEEEECCCCCchH-hhCCC
Confidence 34456788899999999999999999999999999999999999999999998 77775
No 58
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=98.35 E-value=1e-06 Score=66.83 Aligned_cols=66 Identities=14% Similarity=0.023 Sum_probs=52.0
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHH------HHHHHhC--CCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECS------INIRRKV--PNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~------~~l~~~~--p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
...+.++++|+|+++|.+|...+ ... ....+.+ |++++++++++||++...+.++++.+.|.+||.
T Consensus 200 ~~~l~~~~~P~ll~~g~~D~~~~-~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 200 KAGLERFQGPVLFILSGNDLTAQ-EFADSVLGEPAWRGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred HHHHHhcCCcEEEEEcCcchhHH-HHHHHhccChhhHHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 45666789999999999999764 322 3444544 899999999999999634556999999999995
No 59
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.29 E-value=2.4e-06 Score=71.93 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=56.2
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC----CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP----NAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p----~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
.....++++|+|+|||+.|..||.+++.++.+++. +++++++|+.||.+...++-..+.+.+.+|+++
T Consensus 544 ~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~ 615 (620)
T COG1506 544 IFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKR 615 (620)
T ss_pred hhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHH
Confidence 44667799999999999999999999999988764 678999999999997435555566777777765
No 60
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.27 E-value=1.8e-06 Score=66.07 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=56.9
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC--CcEEEEeCCCCCCCc---cCCCHHHHHHHHHHHHHh
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP--NAEVTIVPNANHNSV---ILGREKDFTETLEQIWVS 136 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p--~~~~~~i~~aGH~~~---~~e~p~~~~~~i~~fl~~ 136 (146)
+....+.++++|.+++||+.|.+++++.++.+++..+ +.++..|||.-|..+ ..|+-+.+...|.+||.+
T Consensus 237 ~le~~l~~vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~ 311 (313)
T KOG1455|consen 237 DLEKNLNEVTVPFLILHGTDDKVTDPKVSKELYEKASSSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDE 311 (313)
T ss_pred HHHHhcccccccEEEEecCCCcccCcHHHHHHHHhccCCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHh
Confidence 3456778899999999999999999999999998865 789999999999997 123444566666777754
No 61
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.26 E-value=3e-06 Score=74.80 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=58.5
Q ss_pred HhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEE-EEeCCCCCCCccC--CCHHHHHHHHHHHHHhc
Q 032179 71 SLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEV-TIVPNANHNSVIL--GREKDFTETLEQIWVSS 137 (146)
Q Consensus 71 ~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~-~~i~~aGH~~~~~--e~p~~~~~~i~~fl~~~ 137 (146)
.++++++|+|+|+|++|.++|++.++.+++.+|++++ .+++++||+.+.. ..++++...|.+||...
T Consensus 292 ~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~ 361 (994)
T PRK07868 292 TLADITCPVLAFVGEVDDIGQPASVRGIRRAAPNAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWL 361 (994)
T ss_pred chhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCCCCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHh
Confidence 5788999999999999999999999999999999997 6889999997622 25677888999999874
No 62
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=98.20 E-value=2.8e-06 Score=57.51 Aligned_cols=48 Identities=27% Similarity=0.497 Sum_probs=41.9
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC-CcEEEEeCCCCCC
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP-NAEVTIVPNANHN 116 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p-~~~~~~i~~aGH~ 116 (146)
.+.+.+.++|+++++|++|.+++++..+.+.+.++ +.+++++++++|+
T Consensus 97 ~~~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 97 SEDLAKIRIPVLFIHGENDPLVPPEQVRRLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp CHHHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHCSSEEEEEETTS-TT
T ss_pred hhhhhccCCcEEEEEECCCCcCCHHHHHHHHHHcCCCcEEEEeCCCcCc
Confidence 46777899999999999999999999999999888 6899999999996
No 63
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=98.16 E-value=5.3e-06 Score=64.99 Aligned_cols=65 Identities=17% Similarity=0.292 Sum_probs=53.5
Q ss_pred HhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCC--cEEEEeCCCCCCCccCCC--HHHHHHHHHHHHHh
Q 032179 71 SLIENKVKLYVIQGDRDQVIPIECSINIRRKVPN--AEVTIVPNANHNSVILGR--EKDFTETLEQIWVS 136 (146)
Q Consensus 71 ~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~--~~~~~i~~aGH~~~~~e~--p~~~~~~i~~fl~~ 136 (146)
.++++++|+++++|++|.++|++.++.+++.++. .++++++ +||.....+. ++++.+.|.+|+.+
T Consensus 281 ~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 281 DLKNIKMPILNIYAERDHLVPPDASKALNDLVSSEDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred cHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcCCCCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 4667999999999999999999999999999874 5677777 7898863332 47888999999864
No 64
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=98.11 E-value=1.2e-05 Score=62.10 Aligned_cols=66 Identities=15% Similarity=0.289 Sum_probs=54.4
Q ss_pred hccCCCcEEEEEcCCCCccC-HHHHHHHHHhC--CCcEEEEeCCCCCCCccCCCH--HHHHHHHHHHHHhc
Q 032179 72 LIENKVKLYVIQGDRDQVIP-IECSINIRRKV--PNAEVTIVPNANHNSVILGRE--KDFTETLEQIWVSS 137 (146)
Q Consensus 72 l~~i~~P~Lii~G~~D~~v~-~~~~~~l~~~~--p~~~~~~i~~aGH~~~~~e~p--~~~~~~i~~fl~~~ 137 (146)
...+++|+|+++|++|.+++ .+...++.+.. |++++++++|+.|.++..... +++.+.+.+|+.+.
T Consensus 224 ~~~~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~ 294 (298)
T COG2267 224 APAIALPVLLLQGGDDRVVDNVEGLARFFERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEA 294 (298)
T ss_pred cccccCCEEEEecCCCccccCcHHHHHHHHhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhh
Confidence 45689999999999999999 67777776664 578999999999999844455 67888888888764
No 65
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=98.08 E-value=1.1e-05 Score=59.15 Aligned_cols=57 Identities=23% Similarity=0.364 Sum_probs=43.9
Q ss_pred CCcEEEEEcCCCCccCHHHHHHHHHhCC----CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 76 KVKLYVIQGDRDQVIPIECSINIRRKVP----NAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~~~~~~l~~~~p----~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
+.|++++||++|+++|.+.++...+.+. ++++..+++.||.+. .+..+.+.+||++.
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKH 215 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhh
Confidence 6899999999999999999988877653 578999999999986 45666788998763
No 66
>PRK11460 putative hydrolase; Provisional
Probab=98.06 E-value=8.9e-06 Score=60.44 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=45.5
Q ss_pred cCCCcEEEEEcCCCCccCHHHHHHHHHhCC----CcEEEEeCCCCCCCccCCCHHHHHHHHHHHH
Q 032179 74 ENKVKLYVIQGDRDQVIPIECSINIRRKVP----NAEVTIVPNANHNSVILGREKDFTETLEQIW 134 (146)
Q Consensus 74 ~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p----~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl 134 (146)
..+.|++++||++|+++|.+.++.+.+.+. ++++++++++||.+. .+.-+...+-+.+++
T Consensus 146 ~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-~~~~~~~~~~l~~~l 209 (232)
T PRK11460 146 PTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAID-PRLMQFALDRLRYTV 209 (232)
T ss_pred cCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-HHHHHHHHHHHHHHc
Confidence 357899999999999999999999887764 568899999999986 443333333333333
No 67
>PRK11071 esterase YqiA; Provisional
Probab=98.01 E-value=1.9e-05 Score=56.98 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=47.2
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
..+|++++||++|.++|.+.+.++++. +++++++|++|... ..+++.+.+.+|+.
T Consensus 135 ~~~~v~iihg~~De~V~~~~a~~~~~~---~~~~~~~ggdH~f~---~~~~~~~~i~~fl~ 189 (190)
T PRK11071 135 SPDLIWLLQQTGDEVLDYRQAVAYYAA---CRQTVEEGGNHAFV---GFERYFNQIVDFLG 189 (190)
T ss_pred ChhhEEEEEeCCCCcCCHHHHHHHHHh---cceEEECCCCcchh---hHHHhHHHHHHHhc
Confidence 667889999999999999999999885 46778899999974 44889999999874
No 68
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=97.97 E-value=3e-05 Score=57.02 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=53.7
Q ss_pred hccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 72 LIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 72 l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
...+++|+|.|.|+.|.++|...+..+++.++++.++.-+ .||++. +...+.+.|.+|+.+.
T Consensus 159 ~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a~vl~Hp-ggH~VP---~~~~~~~~i~~fi~~~ 220 (230)
T KOG2551|consen 159 KRPLSTPSLHIFGETDTIVPSERSEQLAESFKDATVLEHP-GGHIVP---NKAKYKEKIADFIQSF 220 (230)
T ss_pred ccCCCCCeeEEecccceeecchHHHHHHHhcCCCeEEecC-CCccCC---CchHHHHHHHHHHHHH
Confidence 3459999999999999999999999999999999777776 789986 5567899999998764
No 69
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=97.94 E-value=2.1e-05 Score=58.06 Aligned_cols=69 Identities=13% Similarity=0.315 Sum_probs=58.9
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC--CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhcCC
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP--NAEVTIVPNANHNSVILGREKDFTETLEQIWVSSAD 139 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p--~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~~~ 139 (146)
...+++.++|.|++.|..|.+|||.+.+.+++..| +.++..+|++.|.--++. +-+.++|.+|+.+...
T Consensus 214 ~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~Krl~eFP~gtHNDT~i~--dGYfq~i~dFlaE~~~ 284 (300)
T KOG4391|consen 214 YRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSRTKRLAEFPDGTHNDTWIC--DGYFQAIEDFLAEVVK 284 (300)
T ss_pred hhhhccccCceEEeecCccccCCcHHHHHHHHhCchhhhhheeCCCCccCceEEe--ccHHHHHHHHHHHhcc
Confidence 34566789999999999999999999999999998 578999999999986333 6789999999987533
No 70
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=97.89 E-value=2e-05 Score=57.98 Aligned_cols=59 Identities=19% Similarity=0.465 Sum_probs=51.5
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
.+||+|-+||-.|.+||.+.+..+++.+|+-++.++||+.|... ...++.+....+|..
T Consensus 198 ~~C~VLTvhGs~D~IVPve~AkefAk~i~nH~L~iIEgADHnyt--~~q~~l~~lgl~f~k 256 (269)
T KOG4667|consen 198 KQCRVLTVHGSEDEIVPVEDAKEFAKIIPNHKLEIIEGADHNYT--GHQSQLVSLGLEFIK 256 (269)
T ss_pred ccCceEEEeccCCceeechhHHHHHHhccCCceEEecCCCcCcc--chhhhHhhhcceeEE
Confidence 67999999999999999999999999999999999999999985 344667777666654
No 71
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=97.88 E-value=8.4e-05 Score=54.28 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=39.1
Q ss_pred HHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhC----CCcEEEEeCCCCCCCccCCCH
Q 032179 68 YLESLIENKVKLYVIQGDRDQVIPIECSINIRRKV----PNAEVTIVPNANHNSVILGRE 123 (146)
Q Consensus 68 ~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~----p~~~~~~i~~aGH~~~~~e~p 123 (146)
..+...++++|+++++|++|+.++.+..+.+.+.+ ...++.+|+|++|.......+
T Consensus 137 ~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~ 196 (218)
T PF01738_consen 137 PLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRP 196 (218)
T ss_dssp HHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTST
T ss_pred chhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCc
Confidence 34567789999999999999999999877777665 578999999999998744433
No 72
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=97.62 E-value=7.1e-05 Score=58.15 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=55.9
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHH-hCCCcEEEEeCCCCCCCccCC----CHH-HHHHHHHHHHHhc
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRR-KVPNAEVTIVPNANHNSVILG----REK-DFTETLEQIWVSS 137 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~-~~p~~~~~~i~~aGH~~~~~e----~p~-~~~~~i~~fl~~~ 137 (146)
...+.+|.+|+||||..+|++++++....... ..|++.+.+.+..||.-+ +. +|. ...+.+.+|++..
T Consensus 267 ~~~L~~Ir~PtLii~A~DDP~~~~~~iP~~~~~~np~v~l~~t~~GGHvGf-l~~~~~~~~~W~~~ri~~~l~~~ 340 (345)
T COG0429 267 LPLLPKIRKPTLIINAKDDPFMPPEVIPKLQEMLNPNVLLQLTEHGGHVGF-LGGKLLHPQMWLEQRILDWLDPF 340 (345)
T ss_pred cccccccccceEEEecCCCCCCChhhCCcchhcCCCceEEEeecCCceEEe-ccCccccchhhHHHHHHHHHHHH
Confidence 45778899999999999999999988777666 668999999999999988 65 443 5667788888764
No 73
>COG0400 Predicted esterase [General function prediction only]
Probab=97.51 E-value=0.00036 Score=51.21 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=46.1
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCC----CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVP----NAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p----~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
-..|++++||+.|++||...+.++.+.+. +++..+++ .||.+. .+-.+.+.+|+...
T Consensus 145 ~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~~~ 205 (207)
T COG0400 145 AGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLANT 205 (207)
T ss_pred CCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHHhc
Confidence 57899999999999999999999987753 67788898 899986 34455667787653
No 74
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=97.41 E-value=0.0007 Score=50.47 Aligned_cols=69 Identities=14% Similarity=0.322 Sum_probs=53.9
Q ss_pred cHHHHhccCC-CcEEEEEcCCCCccCHHHHHHHHHhCCC--cEEEEeCCCCCCCccCCCHH---HHHHHHHHHHHh
Q 032179 67 DYLESLIENK-VKLYVIQGDRDQVIPIECSINIRRKVPN--AEVTIVPNANHNSVILGREK---DFTETLEQIWVS 136 (146)
Q Consensus 67 ~~~~~l~~i~-~P~Lii~G~~D~~v~~~~~~~l~~~~p~--~~~~~i~~aGH~~~~~e~p~---~~~~~i~~fl~~ 136 (146)
+....+.++. .|+|++||.+|.++|...+..+.+.... .+..++++++|... ...+. +....+.+|+.+
T Consensus 222 d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~~~~H~~~-~~~~~~~~~~~~~~~~f~~~ 296 (299)
T COG1073 222 DPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARERPKKLLFVPGGGHIDL-YDNPPAVEQALDKLAEFLER 296 (299)
T ss_pred cchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccCCceEEEecCCccccc-cCccHHHHHHHHHHHHHHHH
Confidence 3345555666 7999999999999999999999888765 57888899999986 43333 677777888765
No 75
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=97.36 E-value=0.0025 Score=50.35 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=60.3
Q ss_pred ccHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcE-EEE-eCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 66 DDYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAE-VTI-VPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 66 ~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~-~~~-i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
.+..+.++.+++|+|++.=..|...|++..+.+.+.++.+. ++. -...||-.+ +...+.+.+.|.+||+.
T Consensus 296 ~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~~~~i~S~~GHDaF-L~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 296 GDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGALREIDSPYGHDAF-LVESEAVGPLIRKFLAL 367 (368)
T ss_pred CcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCceEEecCCCCchhh-hcchhhhhHHHHHHhhc
Confidence 45667899999999999999999999999999999999766 644 445699999 77778899999999974
No 76
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=97.33 E-value=0.0011 Score=51.75 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=46.4
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC-CcEEEEeCCCCCCCccCCCHHHH-HHHHHHHHHh
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP-NAEVTIVPNANHNSVILGREKDF-TETLEQIWVS 136 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p-~~~~~~i~~aGH~~~~~e~p~~~-~~~i~~fl~~ 136 (146)
|.....+.|++|+++..|-.|+++||+..-.++..++ ..++.+++..||... ..+ .+...+|+.+
T Consensus 253 D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~~~K~l~vyp~~~He~~-----~~~~~~~~~~~l~~ 319 (320)
T PF05448_consen 253 DAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIPGPKELVVYPEYGHEYG-----PEFQEDKQLNFLKE 319 (320)
T ss_dssp -HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--SSEEEEEETT--SSTT-----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhccCCCeeEEeccCcCCCch-----hhHHHHHHHHHHhc
Confidence 4455666799999999999999999999999999987 578999999999885 445 6677777754
No 77
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.33 E-value=0.00066 Score=49.13 Aligned_cols=63 Identities=22% Similarity=0.306 Sum_probs=52.8
Q ss_pred HHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 70 ESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 70 ~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
..+....+|+++|+|+.|.+++....-...+. -..+++++++++|+.+ ..-..+.+.+.+|+.
T Consensus 143 s~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-~~~~~i~i~~a~HFF~--gKl~~l~~~i~~~l~ 205 (210)
T COG2945 143 SFLAPCPSPGLVIQGDADDVVDLVAVLKWQES-IKITVITIPGADHFFH--GKLIELRDTIADFLE 205 (210)
T ss_pred hhccCCCCCceeEecChhhhhcHHHHHHhhcC-CCCceEEecCCCceec--ccHHHHHHHHHHHhh
Confidence 34556789999999999999998887777776 4577899999999986 566889999999996
No 78
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=97.26 E-value=0.00047 Score=50.69 Aligned_cols=48 Identities=27% Similarity=0.373 Sum_probs=28.2
Q ss_pred HhccCCCcEEEEEcCCCCccCHHHHH-HHHHhC-----C-CcEEEEeCCCCCCCc
Q 032179 71 SLIENKVKLYVIQGDRDQVIPIECSI-NIRRKV-----P-NAEVTIVPNANHNSV 118 (146)
Q Consensus 71 ~l~~i~~P~Lii~G~~D~~v~~~~~~-~l~~~~-----p-~~~~~~i~~aGH~~~ 118 (146)
.+.++++|+|+|.|++|.+.|..... .+.+.+ + +.+.+.|+++||++.
T Consensus 110 pvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~i~ 164 (213)
T PF08840_consen 110 PVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHLIE 164 (213)
T ss_dssp -GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S---
T ss_pred cHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCceec
Confidence 46779999999999999998766554 333322 3 568899999999975
No 79
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.24 E-value=0.00047 Score=50.55 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=33.7
Q ss_pred ccCCCcEEEEEcCCCCccCHHHHHHHHHhCCC-cEEEEeCCCCCCCc
Q 032179 73 IENKVKLYVIQGDRDQVIPIECSINIRRKVPN-AEVTIVPNANHNSV 118 (146)
Q Consensus 73 ~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~-~~~~~i~~aGH~~~ 118 (146)
.+|++|||.|+|.+|.+++++.++.+.+.+.+ .+++..+ .||.+.
T Consensus 158 ~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~~~v~~h~-gGH~vP 203 (212)
T PF03959_consen 158 PKISIPTLHVIGENDPVVPPERSEALAEMFDPDARVIEHD-GGHHVP 203 (212)
T ss_dssp TT---EEEEEEETT-SSS-HHHHHHHHHHHHHHEEEEEES-SSSS--
T ss_pred ccCCCCeEEEEeCCCCCcchHHHHHHHHhccCCcEEEEEC-CCCcCc
Confidence 45899999999999999999999999999887 8888887 678875
No 80
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=97.03 E-value=0.0012 Score=46.95 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=37.0
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCc
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSV 118 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~ 118 (146)
+.+|+++|.+++|+++|.+.++.+++.+ +++++.++++||+..
T Consensus 113 l~~~~~viaS~nDp~vp~~~a~~~A~~l-~a~~~~~~~~GHf~~ 155 (171)
T PF06821_consen 113 LPFPSIVIASDNDPYVPFERAQRLAQRL-GAELIILGGGGHFNA 155 (171)
T ss_dssp HHCCEEEEEETTBSSS-HHHHHHHHHHH-T-EEEEETS-TTSSG
T ss_pred cCCCeEEEEcCCCCccCHHHHHHHHHHc-CCCeEECCCCCCccc
Confidence 5688899999999999999999999998 789999999999975
No 81
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.02 E-value=0.0052 Score=47.13 Aligned_cols=70 Identities=9% Similarity=0.120 Sum_probs=51.0
Q ss_pred ccHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC--CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhcC
Q 032179 66 DDYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP--NAEVTIVPNANHNSVILGREKDFTETLEQIWVSSA 138 (146)
Q Consensus 66 ~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p--~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~~ 138 (146)
.|.....+...||+|++.|+..+.. +.+..+...+. +++++.++++|=.+. .|+|+.+.+.++-|++..+
T Consensus 209 ~DL~~~~~~~~c~vLlvvG~~Sp~~--~~vv~~ns~Ldp~~ttllkv~dcGglV~-eEqP~klaea~~lFlQG~G 280 (283)
T PF03096_consen 209 TDLSIERPSLGCPVLLVVGDNSPHV--DDVVEMNSKLDPTKTTLLKVADCGGLVL-EEQPGKLAEAFKLFLQGMG 280 (283)
T ss_dssp ----SECTTCCS-EEEEEETTSTTH--HHHHHHHHHS-CCCEEEEEETT-TT-HH-HH-HHHHHHHHHHHHHHTT
T ss_pred ccchhhcCCCCCCeEEEEecCCcch--hhHHHHHhhcCcccceEEEecccCCccc-ccCcHHHHHHHHHHHccCC
Confidence 3444555667899999999999975 45567777764 678999999999997 9999999999999998653
No 82
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.01 E-value=0.0011 Score=49.18 Aligned_cols=60 Identities=8% Similarity=0.218 Sum_probs=52.2
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCC----CcEEEEeCCCCCCCccCCCHHHHHHHHHHHH
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVP----NAEVTIVPNANHNSVILGREKDFTETLEQIW 134 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p----~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl 134 (146)
..+|-|++.++.|.+++.+..++..+... +++...++++.|..|.-.+|+++.+.+.+|+
T Consensus 177 ~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 177 SRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 56899999999999999998888765432 4788889999999997789999999999985
No 83
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.99 E-value=0.0027 Score=47.52 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=54.5
Q ss_pred ccCCCcEEEEEcCCCCccCHHHHHHHHHhCC-CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 73 IENKVKLYVIQGDRDQVIPIECSINIRRKVP-NAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 73 ~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p-~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
..+.+|+.++.|++|..+..+......+... ..++.+++ .||+.. .++.+++.+.|.+.+..
T Consensus 173 ~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~~f~l~~fd-GgHFfl-~~~~~~v~~~i~~~l~~ 235 (244)
T COG3208 173 APLACPIHAFGGEKDHEVSRDELGAWREHTKGDFTLRVFD-GGHFFL-NQQREEVLARLEQHLAH 235 (244)
T ss_pred CCcCcceEEeccCcchhccHHHHHHHHHhhcCCceEEEec-Ccceeh-hhhHHHHHHHHHHHhhh
Confidence 3589999999999999999999998888776 67899998 689997 89999999999998864
No 84
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=96.98 E-value=0.0028 Score=50.33 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=56.7
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCC-cEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPN-AEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~-~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
|......++++|-++|.|..|++..++......+.+|+ ..+.++||++|..- . ....+.+..|+...
T Consensus 253 DP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G~K~lr~vPN~~H~~~-~---~~~~~~l~~f~~~~ 320 (367)
T PF10142_consen 253 DPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPGEKYLRYVPNAGHSLI-G---SDVVQSLRAFYNRI 320 (367)
T ss_pred CHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCCCeeEEeCCCCCcccc-h---HHHHHHHHHHHHHH
Confidence 44556677899999999999999999999999999995 56889999999985 3 66777888898764
No 85
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=96.94 E-value=0.0039 Score=46.19 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=43.1
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC-----CcEEEEeCCCCCCCc
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP-----NAEVTIVPNANHNSV 118 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p-----~~~~~~i~~aGH~~~ 118 (146)
.+...++++|+|++.|+.|.++|++....+.+.+. +.++.++++.||...
T Consensus 157 ~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~ 211 (242)
T KOG3043|consen 157 SADIANVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFV 211 (242)
T ss_pred hhHHhcCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhh
Confidence 56777899999999999999999999988877764 246999999999875
No 86
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=96.94 E-value=0.0064 Score=52.76 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=52.9
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC----CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP----NAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p----~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
++...+.++++|+|+|||.+|..+++..+.++++.+. +.++.+.+ .+|.......+..+.+.+.+|+...
T Consensus 446 n~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~-g~H~~~~~~~~~d~~e~~~~Wfd~~ 519 (767)
T PRK05371 446 NYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQ-GGHVYPNNWQSIDFRDTMNAWFTHK 519 (767)
T ss_pred CHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeC-CCccCCCchhHHHHHHHHHHHHHhc
Confidence 3456778899999999999999999988877777663 45665555 6786542445677888889998764
No 87
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=96.90 E-value=0.0034 Score=51.37 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=50.2
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCC-----------------------------------CcEEEEeCCCCCCCcc
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVP-----------------------------------NAEVTIVPNANHNSVI 119 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p-----------------------------------~~~~~~i~~aGH~~~~ 119 (146)
-.+++|+.+|+.|.+++....+++.+.++ +..++.+.+|||+++
T Consensus 363 ~gikVLiYnGd~D~icn~~Gt~~wi~~L~w~g~~~f~~a~~~~w~~~~~~v~G~vk~~~~~~~~~l~~~~V~~AGH~vp- 441 (462)
T PTZ00472 363 DGVRVMIYAGDMDFICNWIGNKAWTLALQWPGNAEFNAAPDVPFSAVDGRWAGLVRSAASNTSSGFSFVQVYNAGHMVP- 441 (462)
T ss_pred cCceEEEEECCcCeecCcHhHHHHHHhCCCCCccchhhcCccccEecCCEeceEEEEEecccCCCeEEEEECCCCccCh-
Confidence 46899999999999999877766654432 244667789999997
Q ss_pred CCCHHHHHHHHHHHHHh
Q 032179 120 LGREKDFTETLEQIWVS 136 (146)
Q Consensus 120 ~e~p~~~~~~i~~fl~~ 136 (146)
.++|+...+.+..|+..
T Consensus 442 ~d~P~~~~~~i~~fl~~ 458 (462)
T PTZ00472 442 MDQPAVALTMINRFLRN 458 (462)
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 99999999999999965
No 88
>PLN02442 S-formylglutathione hydrolase
Probab=96.71 E-value=0.0069 Score=46.26 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=34.7
Q ss_pred hccCCCcEEEEEcCCCCccCHH-HHHHHH----HhCCCcEEEEeCCCCCCCc
Q 032179 72 LIENKVKLYVIQGDRDQVIPIE-CSINIR----RKVPNAEVTIVPNANHNSV 118 (146)
Q Consensus 72 l~~i~~P~Lii~G~~D~~v~~~-~~~~l~----~~~p~~~~~~i~~aGH~~~ 118 (146)
+...++|+++++|++|.+++.. ..+.+. +.-.++++.++++.+|..+
T Consensus 213 ~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~~~~~~~~pg~~H~~~ 264 (283)
T PLN02442 213 FNDVSATILIDQGEADKFLKEQLLPENFEEACKEAGAPVTLRLQPGYDHSYF 264 (283)
T ss_pred ccccCCCEEEEECCCCccccccccHHHHHHHHHHcCCCeEEEEeCCCCccHH
Confidence 3447899999999999998863 233333 3333688999999999865
No 89
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=96.66 E-value=0.0037 Score=50.34 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=52.4
Q ss_pred HhccCC-CcEEEEEcCCCCccCHHHHHHHHHhC---C--CcEEEEeCCCCCCCccCC---CHHHHHHHHHHHHHh
Q 032179 71 SLIENK-VKLYVIQGDRDQVIPIECSINIRRKV---P--NAEVTIVPNANHNSVILG---REKDFTETLEQIWVS 136 (146)
Q Consensus 71 ~l~~i~-~P~Lii~G~~D~~v~~~~~~~l~~~~---p--~~~~~~i~~aGH~~~~~e---~p~~~~~~i~~fl~~ 136 (146)
++++|+ +|+|.+-|++|.++|++....+.+.+ | +.+....+++||.-. .. -.+++...|.+||.+
T Consensus 332 dl~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gv-f~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 332 DPGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGV-FSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred cHHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEE-eeChhhhhhhchHHHHHHHh
Confidence 567799 99999999999999999999999984 5 445777778999875 43 345567788888864
No 90
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=96.60 E-value=0.0046 Score=48.64 Aligned_cols=57 Identities=18% Similarity=0.372 Sum_probs=51.4
Q ss_pred cEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 78 KLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 78 P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
.+.++.+++|.+||......+.+..|++++.++++ ||..-.+-+.+.|.+.|.+-++
T Consensus 291 ~ii~V~A~~DaYVPr~~v~~Lq~~WPGsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 291 AIIFVAAKNDAYVPRHGVLSLQEIWPGSEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred cEEEEEecCceEechhhcchHHHhCCCCeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 48889999999999999999999999999999986 9998767888999999988765
No 91
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=96.55 E-value=0.0054 Score=49.19 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=53.0
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHH-HHHHHhCCCcEEEEeCCCCCCCccCCC----HHHHHHH-HHHHHHhc
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECS-INIRRKVPNAEVTIVPNANHNSVILGR----EKDFTET-LEQIWVSS 137 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~-~~l~~~~p~~~~~~i~~aGH~~~~~e~----p~~~~~~-i~~fl~~~ 137 (146)
+....+++|++|+|+|+..+|+++|.+.. ......-|++-+++....||.-+ .|. +....+. +.+|+...
T Consensus 313 Ss~~~v~~I~VP~L~ina~DDPv~p~~~ip~~~~~~np~v~l~~T~~GGHlgf-leg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 313 SSSNYVDKIKVPLLCINAADDPVVPEEAIPIDDIKSNPNVLLVITSHGGHLGF-LEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred chhhhcccccccEEEEecCCCCCCCcccCCHHHHhcCCcEEEEEeCCCceeee-eccCCCccchhHHHHHHHHHHHH
Confidence 34568888999999999999999998644 33455678999999999999998 664 3333444 77777653
No 92
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.41 E-value=0.0074 Score=47.98 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=47.7
Q ss_pred cCCCcEEEEEcCCCCccCHHHHHHHHHhCC--------------------------CcEEEEeCCCCCCCccCCCHHHHH
Q 032179 74 ENKVKLYVIQGDRDQVIPIECSINIRRKVP--------------------------NAEVTIVPNANHNSVILGREKDFT 127 (146)
Q Consensus 74 ~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p--------------------------~~~~~~i~~aGH~~~~~e~p~~~~ 127 (146)
+-++++|+.+|..|.++|.-..+...+.++ +..+++|.+|||++. .++|++..
T Consensus 328 ~~~irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~~~~~~~G~~k~~~~ltf~~V~~AGHmvP-~dqP~~a~ 406 (415)
T PF00450_consen 328 DNGIRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRKVNGQVAGYVKQYGNLTFVTVRGAGHMVP-QDQPEAAL 406 (415)
T ss_dssp HTT-EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEETTCSEEEEEEEETTEEEEEETT--SSHH-HHSHHHHH
T ss_pred hccceeEEeccCCCEEEEeccchhhhhccccCcccccccccccccccccceeEEeccEEEEEEcCCcccCh-hhCHHHHH
Confidence 345999999999999999999988877652 234688999999997 99999999
Q ss_pred HHHHHHHH
Q 032179 128 ETLEQIWV 135 (146)
Q Consensus 128 ~~i~~fl~ 135 (146)
+.+..|+.
T Consensus 407 ~m~~~fl~ 414 (415)
T PF00450_consen 407 QMFRRFLK 414 (415)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99999985
No 93
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=96.18 E-value=0.038 Score=42.64 Aligned_cols=61 Identities=8% Similarity=0.130 Sum_probs=50.5
Q ss_pred cCCCcEEEEEcCCCCccCHHHHHHHHHhCC--CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 74 ENKVKLYVIQGDRDQVIPIECSINIRRKVP--NAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 74 ~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p--~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
.++||||++.|++.+.+. ....+...+. ++.++.+.++|=.+. .++|....+.++-|+...
T Consensus 244 tlkc~vllvvGd~Sp~~~--~vv~~n~~Ldp~~ttllk~~d~g~l~~-e~qP~kl~ea~~~FlqG~ 306 (326)
T KOG2931|consen 244 TLKCPVLLVVGDNSPHVS--AVVECNSKLDPTYTTLLKMADCGGLVQ-EEQPGKLAEAFKYFLQGM 306 (326)
T ss_pred cccccEEEEecCCCchhh--hhhhhhcccCcccceEEEEcccCCccc-ccCchHHHHHHHHHHccC
Confidence 366999999999998754 4555655553 678999999999997 889999999999999864
No 94
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=96.17 E-value=0.0033 Score=48.65 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=13.8
Q ss_pred ccHHHHhccCCCcEEEEEcCCCCccCHHHH-HHHHH----hCCC----cEEEEeCCCCCCCccCCCHH---HHHHHHHHH
Q 032179 66 DDYLESLIENKVKLYVIQGDRDQVIPIECS-INIRR----KVPN----AEVTIVPNANHNSVILGREK---DFTETLEQI 133 (146)
Q Consensus 66 ~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~-~~l~~----~~p~----~~~~~i~~aGH~~~~~e~p~---~~~~~i~~f 133 (146)
..+...++.++.|+|++.+++|+++|...- +.+.+ ..+. ..-.+||||+|.+-..++.+ .+.+.+..|
T Consensus 222 e~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~f 301 (303)
T PF08538_consen 222 ERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKF 301 (303)
T ss_dssp -HHHHTGGG--S-EEEEEE--TT---------------------------------------------------------
T ss_pred HHHHHHhccCCCceEEEecCCCceeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344566777999999999999999987543 22222 2221 22458999999986333322 477777777
Q ss_pred HH
Q 032179 134 WV 135 (146)
Q Consensus 134 l~ 135 (146)
|.
T Consensus 302 l~ 303 (303)
T PF08538_consen 302 LK 303 (303)
T ss_dssp --
T ss_pred CC
Confidence 63
No 95
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=96.12 E-value=0.016 Score=43.91 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=33.5
Q ss_pred CCCcEEEEEcCCCCccCH-HHHHHHHHhC----CCcEEEEeCCCCCCCc
Q 032179 75 NKVKLYVIQGDRDQVIPI-ECSINIRRKV----PNAEVTIVPNANHNSV 118 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~-~~~~~l~~~~----p~~~~~~i~~aGH~~~ 118 (146)
...|+++++|+.|..+|. ..+..+.+.+ -++++.++||++|...
T Consensus 210 ~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~v~~~~~~g~~H~f~ 258 (275)
T TIGR02821 210 RHSTILIDQGTADQFLDEQLRPDAFEQACRAAGQALTLRRQAGYDHSYY 258 (275)
T ss_pred cCCCeeEeecCCCcccCccccHHHHHHHHHHcCCCeEEEEeCCCCccch
Confidence 457899999999999998 3444444433 2578999999999975
No 96
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=96.08 E-value=0.011 Score=47.61 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=43.7
Q ss_pred HHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCC-cEEEEeCCCCCCCccCCCH
Q 032179 70 ESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPN-AEVTIVPNANHNSVILGRE 123 (146)
Q Consensus 70 ~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~-~~~~~i~~aGH~~~~~e~p 123 (146)
-.+++|+||++++.|+.|.+.|.+.....++++++ ++++.. ++||....+..|
T Consensus 324 VdL~~It~pvy~~a~~~DhI~P~~Sv~~g~~l~~g~~~f~l~-~sGHIa~vVN~p 377 (445)
T COG3243 324 VDLGDITCPVYNLAAEEDHIAPWSSVYLGARLLGGEVTFVLS-RSGHIAGVVNPP 377 (445)
T ss_pred echhhcccceEEEeecccccCCHHHHHHHHHhcCCceEEEEe-cCceEEEEeCCc
Confidence 36788999999999999999999999999999998 455555 699988744433
No 97
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=96.02 E-value=0.032 Score=43.46 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=48.8
Q ss_pred CCcEEEEEcCCCCccCHHHHHHHHHhCC------------------------C-cEEEEeCCCCCCCccCCCHHHHHHHH
Q 032179 76 KVKLYVIQGDRDQVIPIECSINIRRKVP------------------------N-AEVTIVPNANHNSVILGREKDFTETL 130 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~~~~~~l~~~~p------------------------~-~~~~~i~~aGH~~~~~e~p~~~~~~i 130 (146)
.+++|+..|+.|.+|+.-..+...+.+. + -++++|-+|||++. . +|+...+.+
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~-~-qP~~al~m~ 310 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-Y-RPNETFIMF 310 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC-c-CHHHHHHHH
Confidence 5899999999999999888877766552 2 45677779999995 4 999999999
Q ss_pred HHHHHh
Q 032179 131 EQIWVS 136 (146)
Q Consensus 131 ~~fl~~ 136 (146)
..|+..
T Consensus 311 ~~fi~~ 316 (319)
T PLN02213 311 QRWISG 316 (319)
T ss_pred HHHHcC
Confidence 999965
No 98
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=95.94 E-value=0.053 Score=40.99 Aligned_cols=66 Identities=8% Similarity=0.126 Sum_probs=43.4
Q ss_pred hHhccCCCcccHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC--CcEEEEeCCCCCCCccCCCHH
Q 032179 57 VICGGAKYMDDYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP--NAEVTIVPNANHNSVILGREK 124 (146)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p--~~~~~~i~~aGH~~~~~e~p~ 124 (146)
++...-.+.......++.+.+|++.+++.+|..|.......+...+. ..+++.++|++|-.. |+|-
T Consensus 176 c~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~~~klysl~Gs~HdL~--enl~ 243 (294)
T PF02273_consen 176 CFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINSNKCKLYSLPGSSHDLG--ENLV 243 (294)
T ss_dssp HHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT--EEEEEETT-SS-TT--SSHH
T ss_pred HHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCCCceeEEEecCccchhh--hChH
Confidence 33333333344457888899999999999999999999999988654 688999999999984 6765
No 99
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.89 E-value=0.042 Score=41.02 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=41.4
Q ss_pred HhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC----CcEEEEeCCCCCCCc
Q 032179 71 SLIENKVKLYVIQGDRDQVIPIECSINIRRKVP----NAEVTIVPNANHNSV 118 (146)
Q Consensus 71 ~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p----~~~~~~i~~aGH~~~ 118 (146)
...++++|+|+..|+.|..+|.+....+.+.+. +.++.++++++|..+
T Consensus 153 ~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F~ 204 (236)
T COG0412 153 DAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGFA 204 (236)
T ss_pred ccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCccccc
Confidence 355799999999999999999998888877653 567899999999987
No 100
>PRK10115 protease 2; Provisional
Probab=95.78 E-value=0.027 Score=48.38 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=39.4
Q ss_pred HHHhccCCCc-EEEEEcCCCCccCHHHHHHHHHhCC----CcEEEEe---CCCCCCCc
Q 032179 69 LESLIENKVK-LYVIQGDRDQVIPIECSINIRRKVP----NAEVTIV---PNANHNSV 118 (146)
Q Consensus 69 ~~~l~~i~~P-~Lii~G~~D~~v~~~~~~~l~~~~p----~~~~~~i---~~aGH~~~ 118 (146)
...+.+++.| +|+++|.+|.-||+..+.++...+. +.+++.+ +++||..-
T Consensus 598 ~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~ 655 (686)
T PRK10115 598 YDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGK 655 (686)
T ss_pred hhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC
Confidence 3456678899 5566999999999999999977663 4567777 99999953
No 101
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=95.60 E-value=0.031 Score=46.75 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=40.9
Q ss_pred HHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC-CcEEEEeCCCCCCCc
Q 032179 70 ESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP-NAEVTIVPNANHNSV 118 (146)
Q Consensus 70 ~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p-~~~~~~i~~aGH~~~ 118 (146)
-.+++|++|++++.|..|.++|.+.+..+.+.++ +.+++.. ++||.--
T Consensus 435 idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~gs~~~fvl~-~gGHIgg 483 (560)
T TIGR01839 435 IDLKKVKCDSFSVAGTNDHITPWDAVYRSALLLGGKRRFVLS-NSGHIQS 483 (560)
T ss_pred echhcCCCCeEEEecCcCCcCCHHHHHHHHHHcCCCeEEEec-CCCcccc
Confidence 3678899999999999999999999999999987 5566666 4889764
No 102
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=95.57 E-value=0.03 Score=39.77 Aligned_cols=49 Identities=22% Similarity=0.158 Sum_probs=38.4
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCc
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSV 118 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~ 118 (146)
.+.|..+++||||++|+.|.+=..+.. .-+...+..++++++++.|-.-
T Consensus 135 t~HL~gl~tPtli~qGtrD~fGtr~~V-a~y~ls~~iev~wl~~adHDLk 183 (213)
T COG3571 135 TEHLTGLKTPTLITQGTRDEFGTRDEV-AGYALSDPIEVVWLEDADHDLK 183 (213)
T ss_pred hhhccCCCCCeEEeecccccccCHHHH-HhhhcCCceEEEEeccCccccc
Confidence 467888999999999999997665554 2233346889999999999764
No 103
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=95.55 E-value=0.099 Score=44.15 Aligned_cols=49 Identities=20% Similarity=0.407 Sum_probs=43.7
Q ss_pred HHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC-CcEEEEeCCCCCCCc
Q 032179 70 ESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP-NAEVTIVPNANHNSV 118 (146)
Q Consensus 70 ~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p-~~~~~~i~~aGH~~~ 118 (146)
+.+-.++.|+||+.|.+|..++++..+.+++.+. ..+++++.+++|..-
T Consensus 298 E~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA~~elhVI~~adhsma 347 (784)
T KOG3253|consen 298 EALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQAEVELHVIGGADHSMA 347 (784)
T ss_pred hhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhccceEEEecCCCcccc
Confidence 4566689999999999999999999999998875 678999999999875
No 104
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=95.39 E-value=0.083 Score=38.17 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=40.4
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHH
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIW 134 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl 134 (146)
-..++++++|+.|.+++...+ ...+.+...++.+|.+|... .=+++...|.+|+
T Consensus 133 ~~~~~lvll~~~DEvLd~~~a---~~~~~~~~~~i~~ggdH~f~---~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 133 NPERYLVLLQTGDEVLDYREA---VAKYRGCAQIIEEGGDHSFQ---DFEEYLPQIIAFL 186 (187)
T ss_pred CCccEEEEEecCCcccCHHHH---HHHhcCceEEEEeCCCCCCc---cHHHHHHHHHHhh
Confidence 346899999999999998443 44455666667788899975 3466777888886
No 105
>PLN02209 serine carboxypeptidase
Probab=95.26 E-value=0.089 Score=42.90 Aligned_cols=59 Identities=12% Similarity=0.228 Sum_probs=49.4
Q ss_pred CCcEEEEEcCCCCccCHHHHHHHHHhCC------------------------C-cEEEEeCCCCCCCccCCCHHHHHHHH
Q 032179 76 KVKLYVIQGDRDQVIPIECSINIRRKVP------------------------N-AEVTIVPNANHNSVILGREKDFTETL 130 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~~~~~~l~~~~p------------------------~-~~~~~i~~aGH~~~~~e~p~~~~~~i 130 (146)
.+++|+..|+.|.+|+.-..+...+.+. + -++++|-+|||++. . +|++-...+
T Consensus 351 girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp-~-qP~~al~m~ 428 (437)
T PLN02209 351 GYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE-Y-LPEESSIMF 428 (437)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC-c-CHHHHHHHH
Confidence 5899999999999999988887766552 2 45677889999994 4 999999999
Q ss_pred HHHHHh
Q 032179 131 EQIWVS 136 (146)
Q Consensus 131 ~~fl~~ 136 (146)
..|+..
T Consensus 429 ~~fi~~ 434 (437)
T PLN02209 429 QRWISG 434 (437)
T ss_pred HHHHcC
Confidence 999964
No 106
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=95.05 E-value=0.12 Score=42.09 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCCCccCHHHHHHHHHhCC------------------------C-cEEEEeCCCCCCCccCCCHHHHHHHH
Q 032179 76 KVKLYVIQGDRDQVIPIECSINIRRKVP------------------------N-AEVTIVPNANHNSVILGREKDFTETL 130 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~~~~~~l~~~~p------------------------~-~~~~~i~~aGH~~~~~e~p~~~~~~i 130 (146)
++++|+..|+.|.+||.-..+...+.+. + -++++|-+|||++. . +|++....+
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp-~-qP~~al~m~ 424 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-Y-RPNETFIMF 424 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC-C-CHHHHHHHH
Confidence 5899999999999999998887766552 2 45677888999994 4 899999999
Q ss_pred HHHHHh
Q 032179 131 EQIWVS 136 (146)
Q Consensus 131 ~~fl~~ 136 (146)
..|+..
T Consensus 425 ~~Fi~~ 430 (433)
T PLN03016 425 QRWISG 430 (433)
T ss_pred HHHHcC
Confidence 999964
No 107
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.088 Score=45.78 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=53.8
Q ss_pred HHhccCCCcE-EEEEcCCCCccCHHHHHHHHHhCC----CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhcCC
Q 032179 70 ESLIENKVKL-YVIQGDRDQVIPIECSINIRRKVP----NAEVTIVPNANHNSVILGREKDFTETLEQIWVSSAD 139 (146)
Q Consensus 70 ~~l~~i~~P~-Lii~G~~D~~v~~~~~~~l~~~~p----~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~~~ 139 (146)
..+..++.|. |++||+.|.-|+.+++..+.+++. ..++.++|+.+|.....+.-......+..|+..+..
T Consensus 675 ~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~ 749 (755)
T KOG2100|consen 675 SPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFG 749 (755)
T ss_pred chhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHcC
Confidence 3445566666 999999999999999999987764 378999999999997323335677788888876543
No 108
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=94.84 E-value=0.14 Score=41.99 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCCCccCHHHHHHHHHhC---------C----------------CcEEEEeCCCCCCCccCCCHHHHHHHH
Q 032179 76 KVKLYVIQGDRDQVIPIECSINIRRKV---------P----------------NAEVTIVPNANHNSVILGREKDFTETL 130 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~~~~~~l~~~~---------p----------------~~~~~~i~~aGH~~~~~e~p~~~~~~i 130 (146)
..++||..|+.|.+||.-..+..-+.+ | +..++++.||||++. ..+|+.....+
T Consensus 363 ~~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP-~~~p~~al~m~ 441 (454)
T KOG1282|consen 363 GYRVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVP-YDKPESALIMF 441 (454)
T ss_pred ceEEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCC-CCCcHHHHHHH
Confidence 389999999999999998888764433 1 134578889999996 99999999999
Q ss_pred HHHHHh
Q 032179 131 EQIWVS 136 (146)
Q Consensus 131 ~~fl~~ 136 (146)
..|+..
T Consensus 442 ~~fl~g 447 (454)
T KOG1282|consen 442 QRFLNG 447 (454)
T ss_pred HHHHcC
Confidence 999976
No 109
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=94.84 E-value=0.057 Score=39.53 Aligned_cols=56 Identities=11% Similarity=0.235 Sum_probs=43.4
Q ss_pred CCcEEEEEcCCCCccCHHHHHHHHHhC----CCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 76 KVKLYVIQGDRDQVIPIECSINIRRKV----PNAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~~~~~~l~~~~----p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
..|.+..||+.|++||...++..++.+ ...++..++|.+|...+ +++ ..+..|+.+
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~----~e~-~~~~~~~~~ 203 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSP----QEL-DDLKSWIKT 203 (206)
T ss_pred cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCccccccH----HHH-HHHHHHHHH
Confidence 578999999999999999988877654 35789999999999872 322 345666654
No 110
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=94.73 E-value=0.13 Score=41.51 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=55.1
Q ss_pred HhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEE---eCCCCCCCccCC--CHHHHHHHHHHHHHhc
Q 032179 71 SLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTI---VPNANHNSVILG--REKDFTETLEQIWVSS 137 (146)
Q Consensus 71 ~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~---i~~aGH~~~~~e--~p~~~~~~i~~fl~~~ 137 (146)
.+.++++||.+.+|+.|..+.++..+.+...++++.... +++=.|.-+... .++++.+.|.+++...
T Consensus 327 ~l~~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 327 DLTNIKVPTALYYGDNDWLADPEDVLILLLVLPNSVIKYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLF 398 (403)
T ss_pred CccccccCEEEEecCCcccCCHHHHHHHHHhcccccccccccCCCccceeeeeccCcHHHHHHHHHHHHHhh
Confidence 456689999999999999999999998888888765433 788889877554 5899999999988764
No 111
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=94.58 E-value=0.14 Score=39.47 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=43.2
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhC-----CCcEEEEeCCCCCCCcc-CCCHHHHHHHHHHHHHh
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKV-----PNAEVTIVPNANHNSVI-LGREKDFTETLEQIWVS 136 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~-----p~~~~~~i~~aGH~~~~-~e~p~~~~~~i~~fl~~ 136 (146)
.++|++|.||..|.++|+...+.+.+.+ .+++++.+++.+|.... ...| ....|+.+
T Consensus 218 P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~~~~H~~~~~~~~~-----~a~~Wl~~ 280 (290)
T PF03583_consen 218 PTVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYPGGGHLGAAFASAP-----DALAWLDD 280 (290)
T ss_pred CCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecCCCChhhhhhcCcH-----HHHHHHHH
Confidence 4799999999999999999998886653 25778889999998641 1233 35567765
No 112
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=94.34 E-value=0.064 Score=38.36 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=45.7
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccC--CCHHHHHHHHHHHHHh
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVIL--GREKDFTETLEQIWVS 136 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~--e~p~~~~~~i~~fl~~ 136 (146)
+.-|.+++..++|++++.+.++.+++..+ +.++.+.++||..-.. +.-.+....+.+|+.+
T Consensus 116 lpfps~vvaSrnDp~~~~~~a~~~a~~wg-s~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 116 LPFPSVVVASRNDPYVSYEHAEDLANAWG-SALVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred CCCceeEEEecCCCCCCHHHHHHHHHhcc-HhheecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 55789999999999999999999999885 5677788888875311 1234456666666654
No 113
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=94.08 E-value=0.13 Score=42.74 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=46.7
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHH-HHHHHhCC----------CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECS-INIRRKVP----------NAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~-~~l~~~~p----------~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
.-+|++|++|+.++.|..|.++|+..+ ..+.+.++ ..-+.+-+..||.-. .-....-.+.-.+|++.
T Consensus 290 ~~DLr~Ir~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHLGI-FVS~~VarkEH~~i~~~ 367 (581)
T PF11339_consen 290 RVDLRNIRSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHLGI-FVSGKVARKEHREIASN 367 (581)
T ss_pred EeehhhCCCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCceEE-EeccHhhHHHHHHHHHH
Confidence 346788999999999999999999988 34444443 223456788899875 54445555555555554
No 114
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=94.04 E-value=0.16 Score=41.06 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=41.5
Q ss_pred ccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCC-CCCccCCCHHHHHHHHHHHHHh
Q 032179 73 IENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNAN-HNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 73 ~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aG-H~~~~~e~p~~~~~~i~~fl~~ 136 (146)
.+..+|+|.+.|++|+++|.+..+.++..-.+.+...++... |+-+ +.-...+.+||+.
T Consensus 349 rr~~~plL~i~~~~D~v~P~eD~~lia~~s~~gk~~~~~~~~~~~gy-----~~al~~~~~Wl~~ 408 (411)
T PF06500_consen 349 RRCPTPLLAINGEDDPVSPIEDSRLIAESSTDGKALRIPSKPLHMGY-----PQALDEIYKWLED 408 (411)
T ss_dssp S-BSS-EEEEEETT-SSS-HHHHHHHHHTBTT-EEEEE-SSSHHHHH-----HHHHHHHHHHHHH
T ss_pred CCCCcceEEeecCCCCCCCHHHHHHHHhcCCCCceeecCCCccccch-----HHHHHHHHHHHHH
Confidence 558899999999999999999999999987788888888654 4443 3455666777764
No 115
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=93.96 E-value=0.2 Score=37.72 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=49.7
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcE--EEEeCCC----CCCCccCCCH-HHHHHHHHHH
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAE--VTIVPNA----NHNSVILGRE-KDFTETLEQI 133 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~--~~~i~~a----GH~~~~~e~p-~~~~~~i~~f 133 (146)
.+..+.+.+|+..+...+|+.+|+...+.+.+..+|+. ...++.+ ||+-. .-+| |...+.+..+
T Consensus 209 ~q~yaaVrtPi~~~~~~DD~w~P~As~d~f~~~y~nApl~~~~~~~~~~~lGH~gy-fR~~~Ealwk~~L~w 279 (281)
T COG4757 209 RQVYAAVRTPITFSRALDDPWAPPASRDAFASFYRNAPLEMRDLPRAEGPLGHMGY-FREPFEALWKEMLGW 279 (281)
T ss_pred HHHHHHhcCceeeeccCCCCcCCHHHHHHHHHhhhcCcccceecCcccCcccchhh-hccchHHHHHHHHHh
Confidence 45667799999999999999999999999999988765 4455554 99986 6665 5555555544
No 116
>PRK10162 acetyl esterase; Provisional
Probab=93.04 E-value=0.37 Score=37.37 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=40.5
Q ss_pred CcEEEEEcCCCCccCHHHHHHHHHhC----CCcEEEEeCCCCCCCccC----CCHHHHHHHHHHHHHh
Q 032179 77 VKLYVIQGDRDQVIPIECSINIRRKV----PNAEVTIVPNANHNSVIL----GREKDFTETLEQIWVS 136 (146)
Q Consensus 77 ~P~Lii~G~~D~~v~~~~~~~l~~~~----p~~~~~~i~~aGH~~~~~----e~p~~~~~~i~~fl~~ 136 (146)
-|+++++|+.|.+.+ .++.+++.+ -.+++.+++|..|..... +...+..+.+.+|+.+
T Consensus 249 Pp~~i~~g~~D~L~d--e~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~ 314 (318)
T PRK10162 249 PPCFIAGAEFDPLLD--DSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTA 314 (318)
T ss_pred CCeEEEecCCCcCcC--hHHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHH
Confidence 599999999999865 455555544 368999999999976422 1233456666677754
No 117
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=0.27 Score=37.77 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=51.5
Q ss_pred EEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhcC
Q 032179 79 LYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSSA 138 (146)
Q Consensus 79 ~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~~ 138 (146)
+.++.+++|.++|......+.+..|++++..++ .||..--+-.-+.|.+.|.+-|.+..
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~WPg~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R~~ 367 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIWPGCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDRLD 367 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhCCCCEEEEee-cCceeeeehhchHHHHHHHHHHHhhh
Confidence 677889999999998889999999999999999 78987656777899999999887753
No 118
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.79 E-value=0.38 Score=37.00 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=50.3
Q ss_pred cHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCC-cEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 67 DYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPN-AEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 67 ~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~-~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
|.....+.+++|+|+.-|--|+++||+..-.++++++. .++.+++--+|.-. |.--.+.+..|++..
T Consensus 250 D~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~~~K~i~iy~~~aHe~~----p~~~~~~~~~~l~~l 317 (321)
T COG3458 250 DIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALTTSKTIEIYPYFAHEGG----PGFQSRQQVHFLKIL 317 (321)
T ss_pred hhhhHHHhhccceEEeecccCCCCCChhhHHHhhcccCCceEEEeeccccccC----cchhHHHHHHHHHhh
Confidence 33445567999999999999999999999999999985 45677777777765 333444567777653
No 119
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=92.34 E-value=0.16 Score=40.62 Aligned_cols=61 Identities=18% Similarity=0.311 Sum_probs=50.4
Q ss_pred ccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCc-EEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 73 IENKVKLYVIQGDRDQVIPIECSINIRRKVPNA-EVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 73 ~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~-~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
..+.+|-.++.|..|.+.+++++....+.+|+. .+.++|++.|... +..+.+.+..|+...
T Consensus 326 ~RLalpKyivnaSgDdff~pDsa~lYyd~LPG~kaLrmvPN~~H~~~----n~~i~esl~~flnrf 387 (507)
T COG4287 326 LRLALPKYIVNASGDDFFVPDSANLYYDDLPGEKALRMVPNDPHNLI----NQFIKESLEPFLNRF 387 (507)
T ss_pred hhccccceeecccCCcccCCCccceeeccCCCceeeeeCCCCcchhh----HHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999975 5789999999875 245666677777654
No 120
>PLN00021 chlorophyllase
Probab=92.26 E-value=0.49 Score=36.88 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=34.6
Q ss_pred cCCCcEEEEEcCCCC-----c----cCHH-HHHHHHHhC-CCcEEEEeCCCCCCCccCCC
Q 032179 74 ENKVKLYVIQGDRDQ-----V----IPIE-CSINIRRKV-PNAEVTIVPNANHNSVILGR 122 (146)
Q Consensus 74 ~i~~P~Lii~G~~D~-----~----v~~~-~~~~l~~~~-p~~~~~~i~~aGH~~~~~e~ 122 (146)
++.+|+|++.++.|. . .|.. +...+++.. +++.+.+++++||+-+ +|.
T Consensus 187 ~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~~~~~~~~~~~gH~~~-~~~ 245 (313)
T PLN00021 187 NLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKAPAVHFVAKDYGHMDM-LDD 245 (313)
T ss_pred cCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCCCeeeeeecCCCccee-ecC
Confidence 377999999999763 2 2233 336666665 4788889999999998 544
No 121
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=92.24 E-value=0.61 Score=35.97 Aligned_cols=38 Identities=24% Similarity=0.473 Sum_probs=30.5
Q ss_pred ccHHHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC
Q 032179 66 DDYLESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP 103 (146)
Q Consensus 66 ~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p 103 (146)
..+.+.+.+-++|++++.|.+|.+|.-+...+++..+.
T Consensus 202 ~~~I~~ln~~~ikvli~ygg~DhLIEeeI~~E~a~~f~ 239 (297)
T PF06342_consen 202 KEYIDKLNKKPIKVLIAYGGKDHLIEEEISFEFAMKFK 239 (297)
T ss_pred HHHHHHhccCCCcEEEEEcCcchhhHHHHHHHHHHHhC
Confidence 34567777788999999999999988888777766553
No 122
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=91.97 E-value=0.14 Score=37.12 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCccCHHHHHHHHHhCC
Q 032179 76 KVKLYVIQGDRDQVIPIECSINIRRKVP 103 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~~~~~~l~~~~p 103 (146)
..|++++||++|.+||++.++.+.+.+.
T Consensus 168 ~p~~~i~hG~~D~vVp~~~~~~~~~~l~ 195 (212)
T TIGR01840 168 TPIMSVVHGDADYTVLPGNADEIRDAML 195 (212)
T ss_pred CCeEEEEEcCCCceeCcchHHHHHHHHH
Confidence 4457899999999999999999988764
No 123
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=91.51 E-value=0.19 Score=35.98 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCccCHHHHHHHHHhC----CCcEEEEeCCCCCCCc
Q 032179 77 VKLYVIQGDRDQVIPIECSINIRRKV----PNAEVTIVPNANHNSV 118 (146)
Q Consensus 77 ~P~Lii~G~~D~~v~~~~~~~l~~~~----p~~~~~~i~~aGH~~~ 118 (146)
.||++++|+.|.+++ .+..+++.+ -+++++++++.+|...
T Consensus 167 Pp~~i~~g~~D~l~~--~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 167 PPTLIIHGEDDVLVD--DSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp HEEEEEEETTSTTHH--HHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred CCeeeeccccccchH--HHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 489999999998763 455555544 3678999999999753
No 124
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=90.78 E-value=0.58 Score=34.15 Aligned_cols=60 Identities=12% Similarity=0.262 Sum_probs=43.3
Q ss_pred CCcEEEEEcCCCCccCHHHHHHHHHhC---C--CcEEEEeCCCCCCCccCCCH---HHHHHHHHHHHHh
Q 032179 76 KVKLYVIQGDRDQVIPIECSINIRRKV---P--NAEVTIVPNANHNSVILGRE---KDFTETLEQIWVS 136 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~~~~~~l~~~~---p--~~~~~~i~~aGH~~~~~e~p---~~~~~~i~~fl~~ 136 (146)
+++.|-|-|+.|.++.+.......+++ | ...-++.+|+||+-. ..-+ +++...|.+|+.+
T Consensus 134 ~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGl-F~G~rwr~~I~P~i~~fi~~ 201 (202)
T PF06850_consen 134 RTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGL-FNGSRWREEIYPRIREFIRQ 201 (202)
T ss_pred cceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeec-ccchhhhhhhhHHHHHHHHh
Confidence 456777999999999998887777764 4 345678899999974 4321 4466667777754
No 125
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.07 E-value=2.8 Score=32.04 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=76.8
Q ss_pred ccccccCceEEEEEecchhHHHHHH--hh-hhcCCchhHHHHhhccccchhhhhhHHHhHhccCCCc----ccHHHHhcc
Q 032179 2 SWYEHLGRCVCFFVCRNHRAWESLL--KP-LTGRRDLNFIIMDLPRHTHHSAWHSMHNVICGGAKYM----DDYLESLIE 74 (146)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~w~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~ 74 (146)
+|.+|---.-++..+.....|-+.+ .+ +.....++.+...-+.-++..-.+ +.+.-.+... .-..+.+.+
T Consensus 164 ~~~~hv~~lt~yi~~~~lp~~ir~~Li~~~l~~~n~p~e~l~tal~l~h~~v~r---n~v~la~qEm~eV~~~d~e~~ee 240 (301)
T KOG3975|consen 164 RYLPHVVSLTSYIYWILLPGFIRFILIKFMLCGSNGPQEFLSTALFLTHPQVVR---NSVGLAAQEMEEVTTRDIEYCEE 240 (301)
T ss_pred eeehhhhheeeeeeeecChHHHHHHHHHHhcccCCCcHHHHhhHHHhhcHHHHH---HHhhhchHHHHHHHHhHHHHHHh
Confidence 4566655566666677777776632 22 455555666664433333322111 1111110000 011234445
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCCC--cEEEEeCCCCCCCccCCCHHHHHHHHHHHH
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVPN--AEVTIVPNANHNSVILGREKDFTETLEQIW 134 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~--~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl 134 (146)
-.+-+.+..|..|..||.+....+.+.+|. +++.+ ++.-|... ....+..+..+.+.+
T Consensus 241 n~d~l~Fyygt~DgW~p~~~~d~~kdd~~eed~~Lde-dki~HAFV-~~~~q~ma~~v~d~~ 300 (301)
T KOG3975|consen 241 NLDSLWFYYGTNDGWVPSHYYDYYKDDVPEEDLKLDE-DKIPHAFV-VKHAQYMANAVFDMI 300 (301)
T ss_pred cCcEEEEEccCCCCCcchHHHHHHhhhcchhceeecc-ccCCccee-ecccHHHHHHHHHhh
Confidence 556788899999999999999999999995 45555 88899986 666676776666544
No 126
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=88.91 E-value=1 Score=33.97 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=29.0
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC-Cc----EEEEeCCCCCC
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP-NA----EVTIVPNANHN 116 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p-~~----~~~~i~~aGH~ 116 (146)
.+.+.++++|+|++.|-.|..... .+...++.+. .. ++++-| .+|.
T Consensus 221 ~~~~~~i~vP~l~v~Gw~D~~~~~-~~~~~~~~l~~~~~~~~~Liigp-w~H~ 271 (272)
T PF02129_consen 221 SERLDKIDVPVLIVGGWYDTLFLR-GALRAYEALRAPGSKPQRLIIGP-WTHG 271 (272)
T ss_dssp HHHHGG--SEEEEEEETTCSSTSH-HHHHHHHHHCTTSTC-EEEEEES-ESTT
T ss_pred HHHHhhCCCCEEEecccCCcccch-HHHHHHHHhhcCCCCCCEEEEeC-CCCC
Confidence 455788999999999999966664 4455555543 33 555544 5664
No 127
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=88.22 E-value=2.1 Score=32.77 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCCCccC--HHHHHHHHHhCCCcEEEEeCCCCCCCc
Q 032179 76 KVKLYVIQGDRDQVIP--IECSINIRRKVPNAEVTIVPNANHNSV 118 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~--~~~~~~l~~~~p~~~~~~i~~aGH~~~ 118 (146)
--|+++++|+.|.+.+ ...++++.+.-..+++..+++..|...
T Consensus 245 lPP~~i~~a~~D~l~~~~~~~a~~L~~agv~~~~~~~~g~~H~f~ 289 (312)
T COG0657 245 LPPTLIQTAEFDPLRDEGEAYAERLRAAGVPVELRVYPGMIHGFD 289 (312)
T ss_pred CCCEEEEecCCCcchhHHHHHHHHHHHcCCeEEEEEeCCcceecc
Confidence 3589999999999988 333344444445678999999999764
No 128
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=88.18 E-value=0.23 Score=39.47 Aligned_cols=56 Identities=25% Similarity=0.272 Sum_probs=44.5
Q ss_pred HHhccCCCcEEEEEcCCCCccCHHHH-HHHHHhCCCc--EEEEeCCCCCCCccCCCHHHH
Q 032179 70 ESLIENKVKLYVIQGDRDQVIPIECS-INIRRKVPNA--EVTIVPNANHNSVILGREKDF 126 (146)
Q Consensus 70 ~~l~~i~~P~Lii~G~~D~~v~~~~~-~~l~~~~p~~--~~~~i~~aGH~~~~~e~p~~~ 126 (146)
.-+.++++|++++.|..|.+.|+... .+.+..+|+. -+..++++.|+.+ .+..+++
T Consensus 245 tgl~~v~~P~~~~a~s~D~~aP~~~~~~~~f~~l~g~~k~~~~vp~a~h~sf-l~~~~~~ 303 (365)
T COG4188 245 TGLVKVTDPVLLAAGSADGFAPPVTEQIRPFGYLPGALKYLRLVPGATHFSF-LELCKEG 303 (365)
T ss_pred ccceeeecceeeecccccccCCcccccccccccCCcchhheeecCCCccccc-cccCccc
Confidence 45677999999999999998766554 4446778876 6889999999999 7776664
No 129
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=87.02 E-value=0.71 Score=34.26 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=44.1
Q ss_pred HHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCC
Q 032179 70 ESLIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGR 122 (146)
Q Consensus 70 ~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~ 122 (146)
..+..+++|+|++.|.+|.---.+..+.+.....++.+..++|.+|+-. +++
T Consensus 201 ~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~a~~~~f~n~~hy~I-~~~ 252 (270)
T KOG4627|consen 201 WEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRKASFTLFKNYDHYDI-IEE 252 (270)
T ss_pred HHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhhcceeecCCcchhhH-HHH
Confidence 4566799999999999998777777788888888899999999999986 653
No 130
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=86.25 E-value=2.5 Score=34.95 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=52.0
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHh----CCC--------cEEEEeCCCCCCCccC-CCHHHHHHHHHHHHH
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRK----VPN--------AEVTIVPNANHNSVIL-GREKDFTETLEQIWV 135 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~----~p~--------~~~~~i~~aGH~~~~~-e~p~~~~~~i~~fl~ 135 (146)
+..+++-.-..++.||-.|++||+......++. ++. .++..+||.+|+.--. ..+-.....|.+|++
T Consensus 346 LsaF~~~GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE 425 (474)
T PF07519_consen 346 LSAFRARGGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVE 425 (474)
T ss_pred HHHHHhcCCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHh
Confidence 455666778999999999999999888777654 332 3688999999998622 244567888899998
Q ss_pred h
Q 032179 136 S 136 (146)
Q Consensus 136 ~ 136 (146)
+
T Consensus 426 ~ 426 (474)
T PF07519_consen 426 N 426 (474)
T ss_pred C
Confidence 6
No 131
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=85.99 E-value=2.6 Score=30.69 Aligned_cols=61 Identities=13% Similarity=0.242 Sum_probs=40.7
Q ss_pred cHHHHhccCC-CcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 67 DYLESLIENK-VKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 67 ~~~~~l~~i~-~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
+...++.+++ .|+++|+|+++.-..... + ..++++.+.+||..|+- ++.+.+.+.|.+-+.
T Consensus 129 ~~~pei~~l~~~~v~CiyG~~E~d~~cp~---l--~~~~~~~i~lpGgHHfd---~dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 129 PVIPEIAKLPPAPVQCIYGEDEDDSLCPS---L--RQPGVEVIALPGGHHFD---GDYDALAKRILDALK 190 (192)
T ss_pred CchHHHHhCCCCeEEEEEcCCCCCCcCcc---c--cCCCcEEEEcCCCcCCC---CCHHHHHHHHHHHHh
Confidence 4567777765 599999999987432221 1 12688999999665553 456777777776554
No 132
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=83.44 E-value=1.3 Score=32.78 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCccCHHHHHHHHHhC
Q 032179 76 KVKLYVIQGDRDQVIPIECSINIRRKV 102 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~~~~~~l~~~~ 102 (146)
..|++++||+.|..|.+.+++++.+..
T Consensus 169 ~~P~~v~hG~~D~tV~~~n~~~~~~q~ 195 (220)
T PF10503_consen 169 GYPRIVFHGTADTTVNPQNADQLVAQW 195 (220)
T ss_pred CCCEEEEecCCCCccCcchHHHHHHHH
Confidence 479999999999999999998887664
No 133
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=81.32 E-value=4 Score=32.26 Aligned_cols=61 Identities=7% Similarity=0.021 Sum_probs=40.0
Q ss_pred CCCc-EEEEEcCCCCccCHH--HHHHHHHhCCCcEEEEeCCCCCCCccCCCHH-----HHHHHHHHHHHh
Q 032179 75 NKVK-LYVIQGDRDQVIPIE--CSINIRRKVPNAEVTIVPNANHNSVILGREK-----DFTETLEQIWVS 136 (146)
Q Consensus 75 i~~P-~Lii~G~~D~~v~~~--~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~-----~~~~~i~~fl~~ 136 (146)
..+| +|++.++.|.+..-. .++++.+.--++++..+++++|..+ .-.|. +..+.+.+|+.+
T Consensus 266 ~~lp~tlv~~ag~D~L~D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~-~~~~~~~~a~~~~~~i~~fi~~ 334 (336)
T KOG1515|consen 266 LGLPPTLVVVAGYDVLRDEGLAYAEKLKKAGVEVTLIHYEDGFHGFH-ILDPSSKEAHALMDAIVEFIKS 334 (336)
T ss_pred cCCCceEEEEeCchhhhhhhHHHHHHHHHcCCeEEEEEECCCeeEEE-ecCCchhhHHHHHHHHHHHHhh
Confidence 4445 999999999886432 2234433333667888999999988 54443 455566666654
No 134
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=81.29 E-value=2 Score=34.66 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=50.3
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCCC-cEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhcCC
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVPN-AEVTIVPNANHNSVILGREKDFTETLEQIWVSSAD 139 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~-~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~~~ 139 (146)
+.+||=+-.+..|..--+ -..++..+|| .+....+..||+.. .|.|+.+.+-+.+|++....
T Consensus 403 v~vPtg~a~f~~el~~~~--~~~lrdky~nL~~~s~~~~GGhFaa-lE~p~~La~D~~~FV~~~~~ 465 (469)
T KOG2565|consen 403 VRVPTGCARFKFELWHTS--DDVLRDKYPNLTHSSYHPKGGHFAA-LEDPKKLAQDFFSFVEKLNL 465 (469)
T ss_pred cccchhhhccccchhhCc--HHHHhhhcccceeeEeccCCcchhh-hhCcHHHHHHHHHHHHHHHh
Confidence 788999988998876422 2456788887 46777889999998 99999999999999987543
No 135
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.90 E-value=6.8 Score=31.19 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=53.5
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhC----CCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhcC
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKV----PNAEVTIVPNANHNSVILGREKDFTETLEQIWVSSA 138 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~----p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~~ 138 (146)
...+.+.+.++.|.++|.+..+++.+.. -+++.+-+.++-|..|.-..|..+.+...+|+....
T Consensus 224 ~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~ 291 (350)
T KOG2521|consen 224 LPWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVI 291 (350)
T ss_pred ccccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhcc
Confidence 4788999999999999999999885443 356777788888988866799999999999998753
No 136
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=79.71 E-value=1.5 Score=33.99 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=44.2
Q ss_pred cCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 74 ENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 74 ~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
.+.+|-|+|-...|..- .+ -.+-++-.+-++.+++.+||+.| .+.|..+...+..|+.+-
T Consensus 268 ~~p~~klLilAg~d~LD-kd--LtiGQMQGk~Q~~vL~~~GH~v~-ED~P~kva~~~~~f~~Rn 327 (343)
T KOG2564|consen 268 GLPVPKLLILAGVDRLD-KD--LTIGQMQGKFQLQVLPLCGHFVH-EDSPHKVAECLCVFWIRN 327 (343)
T ss_pred CCCccceeEEecccccC-cc--eeeeeeccceeeeeecccCceec-cCCcchHHHHHHHHHhhh
Confidence 36688888877777632 11 11223334568999999999999 999999999999999763
No 137
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=78.34 E-value=4.6 Score=30.62 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=44.7
Q ss_pred CCCcEEEEEcC------CCCccCHHHHHHHHHhCCC----cEEEEeCC--CCCCCccCCCHHHHHHHHHHHH
Q 032179 75 NKVKLYVIQGD------RDQVIPIECSINIRRKVPN----AEVTIVPN--ANHNSVILGREKDFTETLEQIW 134 (146)
Q Consensus 75 i~~P~Lii~G~------~D~~v~~~~~~~l~~~~p~----~~~~~i~~--aGH~~~~~e~p~~~~~~i~~fl 134 (146)
-++.+|-|.|+ .|..||...+..+.-.+.+ -+-.+|.| +.|.-. .|+| .+.+.|.+||
T Consensus 183 ~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~L-heN~-~V~~~I~~FL 252 (255)
T PF06028_consen 183 KNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQL-HENP-QVDKLIIQFL 252 (255)
T ss_dssp TT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGG-GCCH-HHHHHHHHHH
T ss_pred CCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccC-CCCH-HHHHHHHHHh
Confidence 35779999998 7999999999999888753 23445544 689986 7886 4778889887
No 138
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=78.04 E-value=2.7 Score=34.86 Aligned_cols=60 Identities=20% Similarity=0.082 Sum_probs=44.3
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCC------C-cEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVP------N-AEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p------~-~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
-+.+++..+|-.|..+++-.....-+.++ + ..+.+++ +|||+. .++|+.-.+.+..++..
T Consensus 424 ~~Lkw~~~~g~~d~~~~~~~~~~t~e~~~~~~s~~n~~~~r~y~-aGHMvp-~d~P~~~~~~~~~~~~~ 490 (498)
T COG2939 424 PKLKWLGASGYFDASTPFFWSRLTLEEMGGYKSYRNLTFLRIYE-AGHMVP-YDRPESSLEMVNLWING 490 (498)
T ss_pred CcceEeeecchhhhcCCCcccccchhhcccccccCCceEEEEec-Ccceee-cCChHHHHHHHHHHHhh
Confidence 45677888888888888777655545443 2 3445565 999996 99999999988888765
No 139
>PRK04940 hypothetical protein; Provisional
Probab=72.54 E-value=25 Score=25.28 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=40.7
Q ss_pred CCCc--EEEEEcCCCCccCHHHHHHHHHhCCCc-EEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 75 NKVK--LYVIQGDRDQVIPIECSINIRRKVPNA-EVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 75 i~~P--~Lii~G~~D~~v~~~~~~~l~~~~p~~-~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
++-| .+++-.+.|.+++...+..- +.+. +..+.+|..|... .=+.+...|.+|+.
T Consensus 121 ~~~p~r~~vllq~gDEvLDyr~a~~~---y~~~y~~~v~~GGdH~f~---~fe~~l~~I~~F~~ 178 (180)
T PRK04940 121 EKNRDRCLVILSRNDEVLDSQRTAEE---LHPYYEIVWDEEQTHKFK---NISPHLQRIKAFKT 178 (180)
T ss_pred hcCcccEEEEEeCCCcccCHHHHHHH---hccCceEEEECCCCCCCC---CHHHHHHHHHHHHh
Confidence 4445 49999999999987766544 3444 6888998888864 44678888999984
No 140
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=70.25 E-value=21 Score=31.04 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=50.7
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhC----CCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKV----PNAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~----p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
-.-..|++||--|.-|...+...+-..+ ..-++.+||+-.|.+-..|.-+.+-..+..|+++
T Consensus 801 epnRLlLvHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 801 EPNRLLLVHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred CCceEEEEecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 3445899999999999988887776553 3458999999999998778878888899999875
No 141
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=69.46 E-value=3.7 Score=35.02 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCCCccCHHHHHHHHHhC--------CCcEEEEeCCCCCCCc
Q 032179 76 KVKLYVIQGDRDQVIPIECSINIRRKV--------PNAEVTIVPNANHNSV 118 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~~~~~~l~~~~--------p~~~~~~i~~aGH~~~ 118 (146)
..|++++||..|.++|+.+..+-+-.+ ....++.++++-|+-.
T Consensus 555 GKPaIiVhGR~DaLlPvnh~Sr~Y~~ln~~~eG~~s~lrYyeV~naqHfDa 605 (690)
T PF10605_consen 555 GKPAIIVHGRSDALLPVNHTSRPYLGLNRQVEGRASRLRYYEVTNAQHFDA 605 (690)
T ss_pred CCceEEEecccceecccCCCchHHHHHhhhhcccccceeEEEecCCeechh
Confidence 689999999999999988775543322 2456888999999864
No 142
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=69.05 E-value=8.7 Score=28.41 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=28.2
Q ss_pred EEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCc
Q 032179 80 YVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSV 118 (146)
Q Consensus 80 Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~ 118 (146)
..+-|++|.++|++..+..-+.. +.++.++ ++|+++
T Consensus 169 ~aiIg~~D~IFpp~nQ~~~W~~~--~~~~~~~-~~Hy~F 204 (213)
T PF04301_consen 169 KAIIGKKDRIFPPENQKRAWQGR--CTIVEID-APHYPF 204 (213)
T ss_pred EEEEcCCCEEeCHHHHHHHHhCc--CcEEEec-CCCcCc
Confidence 37889999999999988777643 3466664 899997
No 143
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=64.06 E-value=45 Score=25.64 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=39.4
Q ss_pred hccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCC-CCCCccCCCHHHHHHHHHHHHH
Q 032179 72 LIENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNA-NHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 72 l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~a-GH~~~~~e~p~~~~~~i~~fl~ 135 (146)
.+...+|++++.|++ ...++..+.+|.++.+.++.+ |+..-.--.|++..+.|.+-.+
T Consensus 143 Ag~~gVPV~lVsGDd------~~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I~~aa~ 201 (270)
T cd08769 143 AGEFGVPVVLVAGDS------ELEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEELREAVK 201 (270)
T ss_pred HhhcCCCEEEEecCH------HHHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHHHHHHH
Confidence 345899999999987 234566677899988776654 6544424466766666665553
No 144
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=62.80 E-value=24 Score=25.20 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=41.1
Q ss_pred CCcEEEEEcCCCCccCHH---HHHHHHHhCC-CcEEEEeCCCCCCCccCC-CHHHHHHHHHHHH
Q 032179 76 KVKLYVIQGDRDQVIPIE---CSINIRRKVP-NAEVTIVPNANHNSVILG-REKDFTETLEQIW 134 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~~---~~~~l~~~~p-~~~~~~i~~aGH~~~~~e-~p~~~~~~i~~fl 134 (146)
.+|.++.....|...... ......+..+ +.+++.++ ++|+.+ +. +.+++.+.|.+.|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~v~-G~H~~~-l~~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 168 KVPITLFYALDDPLVSMDRLEEADRWWDYTSGDVEVHDVP-GDHFSM-LKPHVAEIAEKIAEWL 229 (229)
T ss_dssp SSEEEEEEECSSSSSSHHCGGHHCHHHGCBSSSEEEEEES-SETTGH-HSTTHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCccccchhhhhHHHHHHhcCCCcEEEEEc-CCCcEe-cchHHHHHHHHHhccC
Confidence 567899999999987766 3334566666 45788887 589998 65 6677777776654
No 145
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=62.04 E-value=67 Score=24.28 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCCccCHHHHHHHHHhCCC--cEEEE-eCCCCCC
Q 032179 76 KVKLYVIQGDRDQVIPIECSINIRRKVPN--AEVTI-VPNANHN 116 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~~~~~~l~~~~p~--~~~~~-i~~aGH~ 116 (146)
...+.+..|.+|..+|.+..+.+.+.+|+ .++.+ .++.-|.
T Consensus 221 ~~kl~f~fg~~D~Wvp~~~~~~l~~~~~~~~~~~~v~~~~i~Ha 264 (266)
T PF10230_consen 221 GDKLWFYFGQNDHWVPNETRDELIERYPGHEPDVVVDEEGIPHA 264 (266)
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHcCCCCCeEEEecCCCCCC
Confidence 67899999999999999999999999993 33322 2555554
No 146
>PF08133 Nuclease_act: Anticodon nuclease activator family; InterPro: IPR012585 This family consists of the anticodon nuclease activator proteins. Pre-existing host tRNAs are reprocessed during Bacteriophage T4 infection of certain Escherichia coli strains. In this pathway, tRNA(Lys) is cleaved 5, by the anticodon nuclease to the wobble base and is later restored in polynucleotide kinase and RNA ligase reactions [].; GO: 0004518 nuclease activity, 0050792 regulation of viral reproduction
Probab=58.64 E-value=1.6 Score=20.65 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=10.6
Q ss_pred CccccccCceEEEE
Q 032179 1 MSWYEHLGRCVCFF 14 (146)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (146)
|.||||.-.+-|+|
T Consensus 10 mqfyr~nlk~~gvf 23 (26)
T PF08133_consen 10 MQFYRHNLKTKGVF 23 (26)
T ss_pred HHHHHhhccccccc
Confidence 67999987776654
No 147
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=51.16 E-value=29 Score=27.86 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=27.2
Q ss_pred hccCCCcEEEEEcCCCCccCHHHHHHHHHh---CCCcEEEEeCCCCCCCccCCCH
Q 032179 72 LIENKVKLYVIQGDRDQVIPIECSINIRRK---VPNAEVTIVPNANHNSVILGRE 123 (146)
Q Consensus 72 l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~---~p~~~~~~i~~aGH~~~~~e~p 123 (146)
...++.|+|+|+.+.=. -......+.+. -++..++++.|+.|..+ -+-|
T Consensus 270 ~~~i~~P~L~InSe~f~--~~~~~~~~~~~~~~~~~~~~~ti~gt~H~s~-sD~~ 321 (379)
T PF03403_consen 270 YSKIPQPLLFINSESFQ--WWENIFRMKKVISNNKESRMLTIKGTAHLSF-SDFP 321 (379)
T ss_dssp GGG--S-EEEEEETTT----HHHHHHHHTT--TTS-EEEEEETT--GGGG-SGGG
T ss_pred ccCCCCCEEEEECcccC--ChhhHHHHHHHhccCCCcEEEEECCCcCCCc-chhh
Confidence 35689999999988643 23333444332 34678999999999987 4433
No 148
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=50.52 E-value=38 Score=27.83 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=38.5
Q ss_pred HhccCCCcEEEEEcCCCCccCHHHHHHHH--HhCCCcEEEEeCCCCCCCccCCCHH----HHHHHHHHHHH
Q 032179 71 SLIENKVKLYVIQGDRDQVIPIECSINIR--RKVPNAEVTIVPNANHNSVILGREK----DFTETLEQIWV 135 (146)
Q Consensus 71 ~l~~i~~P~Lii~G~~D~~v~~~~~~~l~--~~~p~~~~~~i~~aGH~~~~~e~p~----~~~~~i~~fl~ 135 (146)
.+..-.-.+|+|+|++|+... +.+. +.-.++...+.||++|...+-.-|+ +....|.+|-.
T Consensus 346 Wvr~~~~rmlFVYG~nDPW~A----~~f~l~~g~~ds~v~~~PggnHga~I~~L~~~~r~~a~a~l~~WaG 412 (448)
T PF05576_consen 346 WVRNNGPRMLFVYGENDPWSA----EPFRLGKGKRDSYVFTAPGGNHGARIAGLPEAERAEATARLRRWAG 412 (448)
T ss_pred HHHhCCCeEEEEeCCCCCccc----CccccCCCCcceEEEEcCCCcccccccCCCHHHHHHHHHHHHHHcC
Confidence 444455679999999999632 2221 1124678889999999987444443 34555555544
No 149
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=49.16 E-value=66 Score=23.52 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=42.8
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
..-|.+++.|..+...+.+..+.+.+.+-+.-++.++.. ++.. ...-+.|.+.+...+.
T Consensus 52 ~~yP~ly~~g~~~~~~s~~e~~~Lr~Yl~~GGfl~~D~~-~~~~-~~~~~~~r~~~~~v~p 110 (207)
T PF13709_consen 52 FFYPFLYWPGHGDFPLSDEEIANLRRYLENGGFLLFDDR-DCGS-AGFDASFRRLMKRVFP 110 (207)
T ss_pred HhCCEEEEeCCCCCCCCHHHHHHHHHHHHcCCEEEEECC-Cccc-ccccHHHHHHHHHhcC
Confidence 468999999999999999999999999988888888866 2222 2222445555555443
No 150
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=45.64 E-value=48 Score=25.31 Aligned_cols=48 Identities=10% Similarity=0.022 Sum_probs=32.6
Q ss_pred CCCcEEEEEcCCCC---------ccCHH-HHHHHHHhCC-CcEEEEeCCCCCCCccCCCH
Q 032179 75 NKVKLYVIQGDRDQ---------VIPIE-CSINIRRKVP-NAEVTIVPNANHNSVILGRE 123 (146)
Q Consensus 75 i~~P~Lii~G~~D~---------~v~~~-~~~~l~~~~p-~~~~~~i~~aGH~~~~~e~p 123 (146)
..+|+++|..+.+. ..|.. +-+++++..+ .+-..+..+.||+-+ ++..
T Consensus 153 ~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~p~~~~v~~~~GH~d~-LDd~ 211 (259)
T PF12740_consen 153 FSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKPPSWHFVAKDYGHMDF-LDDD 211 (259)
T ss_pred CCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCCCEEEEEeCCCCchHh-hcCC
Confidence 56999999877774 23322 3366666655 455667788999998 6654
No 151
>COG4099 Predicted peptidase [General function prediction only]
Probab=43.61 E-value=9.4 Score=30.08 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhC
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKV 102 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~ 102 (146)
-+.|..++|+.+|+++|.+.++-+.+.+
T Consensus 314 k~~piWvfhs~dDkv~Pv~nSrv~y~~l 341 (387)
T COG4099 314 KKAPIWVFHSSDDKVIPVSNSRVLYERL 341 (387)
T ss_pred ccCceEEEEecCCCccccCcceeehHHH
Confidence 4689999999999999999987665544
No 152
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=42.45 E-value=47 Score=26.25 Aligned_cols=64 Identities=13% Similarity=0.305 Sum_probs=44.3
Q ss_pred CCcEEEEEcCCCCccCHHHHHHHHHh---CCC--cEEEEeCCCCCCCccCC---CHHHHHHHHHHHHHhcCCC
Q 032179 76 KVKLYVIQGDRDQVIPIECSINIRRK---VPN--AEVTIVPNANHNSVILG---REKDFTETLEQIWVSSADI 140 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~~~~~~l~~~---~p~--~~~~~i~~aGH~~~~~e---~p~~~~~~i~~fl~~~~~~ 140 (146)
++-.+-+-|++|.+......+...+. +|. .+...=+++||.-. .. -.+++...|.+|+.+...+
T Consensus 339 ~~aL~tvEGEnDDIsgvGQTkAA~~LC~nIpe~mk~hy~qp~vGHYGV-FnGsrfr~eIvPri~dFI~~~d~~ 410 (415)
T COG4553 339 NVALFTVEGENDDISGVGQTKAAHDLCSNIPEDMKQHYMQPDVGHYGV-FNGSRFREEIVPRIRDFIRRYDRS 410 (415)
T ss_pred ceeEEEeecccccccccchhHHHHHHHhcChHHHHHHhcCCCCCccce-eccchHHHHHHHHHHHHHHHhCcc
Confidence 46677889999998777666555444 553 34567789999874 43 2355677788999886554
No 153
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=42.13 E-value=81 Score=24.18 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=39.0
Q ss_pred ccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCC-CCCCccCCCHHHHHHHHHHHHH
Q 032179 73 IENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNA-NHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 73 ~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~a-GH~~~~~e~p~~~~~~i~~fl~ 135 (146)
....+|++++.|++-. .+...+.+|.++.+.++.+ |+..-.--.|++..+.|.+-..
T Consensus 143 g~~gVPV~lvsGDd~~------~~ea~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~I~~~a~ 200 (265)
T cd00281 143 GYYGVPVVMVAGDAEV------CKEAKAYDAQVETVVTKKGMGRFSVKAPSPQKVLRAIREGTE 200 (265)
T ss_pred hhcCCCEEEEecCHHH------HHHHHHhCCCceEEEEeeeeCCCccccCCHHHHHHHHHHHHH
Confidence 4589999999997533 3445666899988776654 6555434577777777776663
No 154
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=40.74 E-value=22 Score=28.70 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCc
Q 032179 77 VKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSV 118 (146)
Q Consensus 77 ~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~ 118 (146)
--+++++|..|+.-...... ..-+....++|+|++|+.-
T Consensus 377 tnviFtNG~~DPW~~lgv~~---~~~~~~~~~~I~g~~Hc~D 415 (434)
T PF05577_consen 377 TNVIFTNGELDPWRALGVTS---DSSDSVPAIVIPGGAHCSD 415 (434)
T ss_dssp -SEEEEEETT-CCGGGS--S----SSSSEEEEEETT--TTGG
T ss_pred CeEEeeCCCCCCcccccCCC---CCCCCcccEEECCCeeecc
Confidence 46999999999987766222 1223455678999999963
No 155
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=40.12 E-value=1.2e+02 Score=24.69 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=46.6
Q ss_pred CcEEEEEcCCCCccCHHHHHHHHHhCC----CcEEEEe-----------CCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 77 VKLYVIQGDRDQVIPIECSINIRRKVP----NAEVTIV-----------PNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 77 ~P~Lii~G~~D~~v~~~~~~~l~~~~p----~~~~~~i-----------~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
+--+..|+..|..+|.+.-+.+.+.+. ++++..+ .+-.|..- +.....|.+.+-..++..
T Consensus 294 ~~yvsYHs~~D~~~p~~~K~~l~~~l~~lgfda~l~lIkdes~iDGkfIKnl~HGmg-is~k~Lf~KeLp~~lek~ 368 (403)
T PF11144_consen 294 IIYVSYHSIKDDLAPAEDKEELYEILKNLGFDATLHLIKDESEIDGKFIKNLEHGMG-ISDKALFKKELPLMLEKL 368 (403)
T ss_pred eEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCeEEEEecChhhccchheeccccCCC-CCHHHHHHHHhHHHHHHh
Confidence 345566999999999999999987754 6777666 55678875 777788888888888774
No 156
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=40.02 E-value=80 Score=26.48 Aligned_cols=46 Identities=15% Similarity=-0.026 Sum_probs=28.9
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC--CcEEEEeCCCCCC
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP--NAEVTIVPNANHN 116 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p--~~~~~~i~~aGH~ 116 (146)
.+.+.++++|+|++.|=.|...+ ...+.+..... +.+++ +-.-+|.
T Consensus 225 ~~~~~~i~vP~l~~~gw~D~~~~-g~~~~~~~~~~~~~~~li-lGpw~H~ 272 (550)
T TIGR00976 225 WRDLGGSDVPTLVTGGWYDNHSR-GSIRLFLAVHRGGAQRLV-VGPWTHS 272 (550)
T ss_pred hhHhcCCCCCEEEeCcccCCCCc-hHHHHHHHHhhcCCceEE-EccCCCC
Confidence 44677899999999999996444 43444433322 24555 4445676
No 157
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=36.84 E-value=1.5e+02 Score=22.33 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhc
Q 032179 92 IECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSS 137 (146)
Q Consensus 92 ~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~ 137 (146)
....+.+.+.+|+..++.+-+..|+|.=.-.++++.+.+.+.+...
T Consensus 11 ltv~~~l~~~~p~~~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L 56 (251)
T TIGR00067 11 LSVLKEIRKQLPKEHYIYVGDTKRFPYGEKSPEFILEYVLELLTFL 56 (251)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999983334555666555554443
No 158
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=35.59 E-value=1.4e+02 Score=25.90 Aligned_cols=58 Identities=7% Similarity=-0.011 Sum_probs=39.5
Q ss_pred cEEEEEcCCCCccCHHHHHHHHHhCC----CcEEEEeCCCCCCCccCCCHHH--HHHHHHHHHHh
Q 032179 78 KLYVIQGDRDQVIPIECSINIRRKVP----NAEVTIVPNANHNSVILGREKD--FTETLEQIWVS 136 (146)
Q Consensus 78 P~Lii~G~~D~~v~~~~~~~l~~~~p----~~~~~~i~~aGH~~~~~e~p~~--~~~~i~~fl~~ 136 (146)
||||--+..|.-|.|.+++.++..+. .+=+.+-.++||.-- -...+. -...+-.||.+
T Consensus 582 ~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~-~~~~~~A~~~a~~~afl~r 645 (648)
T COG1505 582 PTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGA-APTAEIARELADLLAFLLR 645 (648)
T ss_pred CeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCC-CChHHHHHHHHHHHHHHHH
Confidence 78999999999999999999987664 233555567899986 444332 22333445543
No 159
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=34.73 E-value=1.6e+02 Score=22.70 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=41.7
Q ss_pred CCcEEEEEcCC------CCccCHHHHHHHHHhCCCc-E-----EEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 76 KVKLYVIQGDR------DQVIPIECSINIRRKVPNA-E-----VTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 76 ~~P~Lii~G~~------D~~v~~~~~~~l~~~~p~~-~-----~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
..-+|+|.|+. |..||-..+-.+...+++. + +..=+++.|.-. .|+|. +.+.+..||-.
T Consensus 216 ~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~a~Hs~l-hen~~-v~~yv~~FLw~ 286 (288)
T COG4814 216 NTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKDARHSKL-HENPT-VAKYVKNFLWE 286 (288)
T ss_pred CcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCcchhhcc-CCChh-HHHHHHHHhhc
Confidence 45699999987 4568877777777777632 1 333456899997 88865 77778888743
No 160
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=34.57 E-value=89 Score=19.55 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=27.0
Q ss_pred CHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHH
Q 032179 91 PIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFT 127 (146)
Q Consensus 91 ~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~ 127 (146)
.++.+..+++.+......+++-.||... ...|+...
T Consensus 7 ~ps~a~~i~~~l~~~~~~v~~~~Ghl~~-~~~~~~~~ 42 (100)
T PF01751_consen 7 KPSDAKAIAKALGGEEYIVIATSGHLLE-LAKPEDYD 42 (100)
T ss_dssp SHHHHHHHHHHSSTTTEEEEEESSSSEE-STTSSHHH
T ss_pred CHHHHHHHHHHcCCCCEEEEEeCCcccc-cccccccc
Confidence 3567888888888666777777999997 77766544
No 161
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.10 E-value=1.3e+02 Score=23.79 Aligned_cols=55 Identities=15% Similarity=-0.017 Sum_probs=40.9
Q ss_pred CCCcEEEEEcCCCCccCHHHHH----HHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 75 NKVKLYVIQGDRDQVIPIECSI----NIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~----~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
...||++|.---=-+++++.++ +++..++++.++.|+.-+ ++ +.|.+.+.+-+.+
T Consensus 186 ~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~--~~-----D~Fg~vM~~nlk~ 244 (335)
T KOG2918|consen 186 TNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQIN--PN-----DRFGKVMLANLKR 244 (335)
T ss_pred cCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccC--CC-----ChHHHHHHHHHHh
Confidence 5679999876555667777764 446678999999999765 33 6788888888875
No 162
>PRK00865 glutamate racemase; Provisional
Probab=33.84 E-value=1.7e+02 Score=22.03 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=36.6
Q ss_pred cEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 78 KLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 78 P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
|+.++=.+-= .....+.+.+.+|+..++++-+..|+|.=...++++.+.+.+.++
T Consensus 7 ~IgvfDSGiG---GLtvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~ 61 (261)
T PRK00865 7 PIGVFDSGVG---GLTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVE 61 (261)
T ss_pred eEEEEECCcc---HHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHH
Confidence 5555533322 345678899999999999999999999833344555554444443
No 163
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=33.36 E-value=65 Score=29.67 Aligned_cols=49 Identities=10% Similarity=0.043 Sum_probs=33.7
Q ss_pred ccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCH
Q 032179 73 IENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGRE 123 (146)
Q Consensus 73 ~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p 123 (146)
..+.+|++++.|+.|...+........+..++.+...++ +||+.+ ...+
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~v~-g~H~~~-~~~~ 1281 (1296)
T PRK10252 1233 VPFDGKATLFVAERTLQEGMSPEQAWSPWIAELDVYRQD-CAHVDI-ISPE 1281 (1296)
T ss_pred CcccCceEEEEcCCCCcccCCcccchhhhcCCCEEEECC-CCHHHH-CCcH
Confidence 346789999999998765554444455555667777785 789987 5433
No 164
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=31.34 E-value=1.4e+02 Score=22.88 Aligned_cols=57 Identities=11% Similarity=0.020 Sum_probs=38.7
Q ss_pred ccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCC-CCCCccCCCHHHHHHHHHHHHHh
Q 032179 73 IENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNA-NHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 73 ~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~a-GH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
....+|++++.|++-- .++..+.+|+++.+.++.+ |.... --.|++..+.|.+-..+
T Consensus 144 g~~gVPV~lvsGD~~~------~~ea~~~~P~~~tv~vK~~~g~aa~-~~~p~~a~~~I~~~~~~ 201 (263)
T cd08770 144 AYLGVPVVFVSGDAGL------CAEAKELNPNIVTVPVKEGFGGATI-SIHPGLACKEIRKGVKK 201 (263)
T ss_pred hhcCCCEEEEecCHHH------HHHHHHhCCCceEEEeeeeeccccc-cCCHHHHHHHHHHHHHH
Confidence 4589999999997533 3445666899887776544 53332 45788888888777643
No 165
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=29.40 E-value=1.8e+02 Score=22.35 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=38.4
Q ss_pred ccCCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCC-CCCCccCCCHHHHHHHHHHHHH
Q 032179 73 IENKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNA-NHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 73 ~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~a-GH~~~~~e~p~~~~~~i~~fl~ 135 (146)
....+|++++.|++=- .++..+..|+++.+.++.+ |...-.--.|++..+.|.+-..
T Consensus 144 g~~gVPV~lVsGDd~~------~~ea~~~~p~i~tv~vK~~~gr~aa~~~~p~~a~~~I~~~a~ 201 (266)
T cd08663 144 GEYGVPVVLVTGDDAA------CAEARELGPGVETVAVKEAIGRFAARCLPPAEARALIREAAA 201 (266)
T ss_pred hhcCCCEEEEecCHHH------HHHHHhhCCCcEEEEEecccCCCccccCCHHHHHHHHHHHHH
Confidence 4488999999996432 3445567899887776644 6444324577777777776663
No 166
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.25 E-value=1.3e+02 Score=23.40 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=21.0
Q ss_pred HHHhccCCCcEEEEEcCCCCccCHHHH
Q 032179 69 LESLIENKVKLYVIQGDRDQVIPIECS 95 (146)
Q Consensus 69 ~~~l~~i~~P~Lii~G~~D~~v~~~~~ 95 (146)
.+.+..+.+|+.|+.|++|.+-..+..
T Consensus 183 ~e~~dP~P~PV~IVgsKYDvFq~Fese 209 (363)
T KOG3929|consen 183 HELIDPFPVPVVIVGSKYDVFQDFESE 209 (363)
T ss_pred hhhcCCCCCceEEeccchhhhccccHH
Confidence 455666899999999999988665543
No 167
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=27.92 E-value=62 Score=26.48 Aligned_cols=62 Identities=10% Similarity=0.101 Sum_probs=35.1
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhC-C-Cc--EEEEeCCCCCCCcc--CCCHHHHHHHHHHHHHhc
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKV-P-NA--EVTIVPNANHNSVI--LGREKDFTETLEQIWVSS 137 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~-p-~~--~~~~i~~aGH~~~~--~e~p~~~~~~i~~fl~~~ 137 (146)
-..||+++.|+-|.+-+ +....+.+.+ | +. =.+.+||.|+.+.. .++.+..-+.|.++|.+.
T Consensus 188 ~p~P~VIv~gGlDs~qe-D~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~~ 255 (411)
T PF06500_consen 188 KPYPTVIVCGGLDSLQE-DLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLDYLASR 255 (411)
T ss_dssp S-EEEEEEE--TTS-GG-GGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCcchhHH-HHHHHHHHHHHhCCCEEEEEccCCCcccccCCCCcCHHHHHHHHHHHHhcC
Confidence 45799999999999643 4444444443 3 33 34568888886431 345567888888888764
No 168
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=26.38 E-value=2.5e+02 Score=22.55 Aligned_cols=63 Identities=8% Similarity=0.004 Sum_probs=46.6
Q ss_pred HHhccCCCcEEEEEcCCCCccCHHHHHHHHHhCC---CcEEEEeCCCCCCCccCCCHHHHHHHHHHHHH
Q 032179 70 ESLIENKVKLYVIQGDRDQVIPIECSINIRRKVP---NAEVTIVPNANHNSVILGREKDFTETLEQIWV 135 (146)
Q Consensus 70 ~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~~p---~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~ 135 (146)
....+.+-||++|.-++=+. .++...|.+..+ ...+.++.|+=|..+ -+-|-.+-+.|..++.
T Consensus 281 ~~~~~arqP~~finv~~fQ~--~en~~vmKki~~~n~g~~~it~~GsVHqnf-sDfpfv~p~~i~k~f~ 346 (399)
T KOG3847|consen 281 LQYSQARQPTLFINVEDFQW--NENLLVMKKIESQNEGNHVITLDGSVHQNF-SDFPFVTPNWIGKVFK 346 (399)
T ss_pred hhhhhccCCeEEEEcccccc--hhHHHHHHhhhCCCccceEEEEccceeccc-ccCccccHHHHHHHhc
Confidence 34566889999999655553 566677776665 357889999999998 7888777777776665
No 169
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=26.12 E-value=43 Score=27.53 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=35.9
Q ss_pred EEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHh
Q 032179 80 YVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVS 136 (146)
Q Consensus 80 Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~ 136 (146)
-++.|+.|..|+.+.++... +..+..+.++ +.|..+ +.+ +++.+.|..||..
T Consensus 370 ~~~y~dGDGTV~~~S~~~~~--~~~~~~~~l~-~~H~~i-l~n-~~v~~~I~~fL~~ 421 (440)
T PLN02733 370 EYTYVDGDGTVPVESAKADG--LNAVARVGVP-GDHRGI-LRD-EHVFRILKHWLKV 421 (440)
T ss_pred eEEEeCCCCEEecchhhccC--ccccccccCC-chHHHH-hcC-HHHHHHHHHHHhc
Confidence 45667788888888766432 2334445555 889997 766 5588899999965
No 170
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=24.44 E-value=1.7e+02 Score=20.96 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=36.8
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHHHHHHHHHHHHhcCCCCCCC
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKDFTETLEQIWVSSADINGTG 144 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~~~~~~~~ 144 (146)
+..+++=+.=...-...++.++.+++. + +.+++++ +|-. -.+++|.+.+..|+...+..-+..
T Consensus 32 l~~~~iNLGfsG~~~le~~~a~~ia~~-~-a~~~~ld-~~~N----~~~~~~~~~~~~fv~~iR~~hP~t 94 (178)
T PF14606_consen 32 LGLDVINLGFSGNGKLEPEVADLIAEI-D-ADLIVLD-CGPN----MSPEEFRERLDGFVKTIREAHPDT 94 (178)
T ss_dssp HT-EEEEEE-TCCCS--HHHHHHHHHS----SEEEEE-ESHH----CCTTTHHHHHHHHHHHHHTT-SSS
T ss_pred cCCCeEeeeecCccccCHHHHHHHhcC-C-CCEEEEE-eecC----CCHHHHHHHHHHHHHHHHHhCCCC
Confidence 556666555444446778888888776 3 3566664 4433 255789999999998876544433
No 171
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=23.99 E-value=2.9e+02 Score=20.09 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCccCHHHHHHHHHhCC--CcEEEEeCCCC
Q 032179 78 KLYVIQGDRDQVIPIECSINIRRKVP--NAEVTIVPNAN 114 (146)
Q Consensus 78 P~Lii~G~~D~~v~~~~~~~l~~~~p--~~~~~~i~~aG 114 (146)
++++|.|..|+..+.+.-+.+.+... +.+++++|-++
T Consensus 1 ~l~~iGGg~~~~~~~~i~~~~~~~ag~~~~~i~~iptA~ 39 (217)
T cd03145 1 KLVLIGGAEDKYDNRAILQRFVARAGGAGARIVVIPAAS 39 (217)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHcCCCCCcEEEEeCCC
Confidence 35667777665555566666666553 56777777554
No 172
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=23.79 E-value=40 Score=18.30 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=10.4
Q ss_pred CccccccCceEEEE
Q 032179 1 MSWYEHLGRCVCFF 14 (146)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (146)
|-|-||.+|+..+=
T Consensus 18 L~~~E~~g~vhi~D 31 (43)
T PF10313_consen 18 LAWAEHQGRVHIVD 31 (43)
T ss_pred EEEEccCCeEEEEE
Confidence 35889999987653
No 173
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=23.59 E-value=2.1e+02 Score=20.36 Aligned_cols=34 Identities=12% Similarity=0.325 Sum_probs=20.9
Q ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEe
Q 032179 75 NKVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIV 110 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i 110 (146)
-..++.++.|+.+. -...++.+.+.+|+.+++-.
T Consensus 47 ~~~~vfllG~~~~v--~~~~~~~l~~~yP~l~i~g~ 80 (177)
T TIGR00696 47 EKLPIFLYGGKPDV--LQQLKVKLIKEYPKLKIVGA 80 (177)
T ss_pred cCCeEEEECCCHHH--HHHHHHHHHHHCCCCEEEEE
Confidence 34566666444442 34566777778888777654
No 174
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=23.40 E-value=3.3e+02 Score=20.95 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCccCCCHHH
Q 032179 76 KVKLYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSVILGREKD 125 (146)
Q Consensus 76 ~~P~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~~~e~p~~ 125 (146)
..|+.++=++ +=.....+++.+.+|+.+++++-+..++|. =+.+++
T Consensus 5 ~~~IgvFDSG---VGGLsVlrei~~~LP~e~~iY~~D~a~~PY-G~ks~e 50 (269)
T COG0796 5 QPPIGVFDSG---VGGLSVLREIRRQLPDEDIIYVGDTARFPY-GEKSEE 50 (269)
T ss_pred CCeEEEEECC---CCcHHHHHHHHHHCCCCcEEEEecCCCCCC-CCCCHH
Confidence 3466666433 333567899999999999999999999998 555544
No 175
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.93 E-value=27 Score=29.93 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=15.0
Q ss_pred ccccccCceEEEEEecchhHHHH
Q 032179 2 SWYEHLGRCVCFFVCRNHRAWES 24 (146)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~w~~ 24 (146)
-|||||.|++|+ ...|..|..
T Consensus 748 VWRE~RDRiVGF--PgRyHAwd~ 768 (907)
T KOG2264|consen 748 VWRENRDRIVGF--PGRYHAWDG 768 (907)
T ss_pred hhhhcccccccC--CcccccccC
Confidence 399999999986 344455543
No 176
>PLN02633 palmitoyl protein thioesterase family protein
Probab=21.69 E-value=2.8e+02 Score=21.87 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCCccCHHHH--HHHHHhCCC--cEEEEeCC
Q 032179 75 NKVKLYVIQGDRDQVIPIECS--INIRRKVPN--AEVTIVPN 112 (146)
Q Consensus 75 i~~P~Lii~G~~D~~v~~~~~--~~l~~~~p~--~~~~~i~~ 112 (146)
...|++++||-.|....+... .++.+.+|+ +.-+.+.+
T Consensus 24 ~~~P~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~ig~ 65 (314)
T PLN02633 24 VSVPFIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEIGN 65 (314)
T ss_pred CCCCeEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEECC
Confidence 568999999999998865432 333445554 34455654
No 177
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=21.50 E-value=1.7e+02 Score=23.12 Aligned_cols=39 Identities=8% Similarity=-0.033 Sum_probs=28.1
Q ss_pred EEEEEcCCCCccCHHHHHHHHHhCCCcEEEEeCCCCCCCc
Q 032179 79 LYVIQGDRDQVIPIECSINIRRKVPNAEVTIVPNANHNSV 118 (146)
Q Consensus 79 ~Lii~G~~D~~v~~~~~~~l~~~~p~~~~~~i~~aGH~~~ 118 (146)
.+-+++.....+.+-...-+ ...+++.++++|++||...
T Consensus 225 ~IGvNC~~~~~~~~~~~~L~-~~~~~~~llvYPNsGe~yd 263 (317)
T KOG1579|consen 225 GIGVNCVSPNFVEPLLKELM-AKLTKIPLLVYPNSGEVYD 263 (317)
T ss_pred EEEeccCCchhccHHHHHHh-hccCCCeEEEecCCCCCCc
Confidence 44456777776666554433 6678999999999999875
No 178
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=21.32 E-value=73 Score=25.35 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=17.7
Q ss_pred HHhccCCCcEEEEEcCCCCccCHH
Q 032179 70 ESLIENKVKLYVIQGDRDQVIPIE 93 (146)
Q Consensus 70 ~~l~~i~~P~Lii~G~~D~~v~~~ 93 (146)
..+...++|+++|+|..|..-...
T Consensus 69 ~~l~~~~Ipv~~I~GNHD~~~~~~ 92 (390)
T COG0420 69 RRLKDAGIPVVVIAGNHDSPSRLS 92 (390)
T ss_pred HHhccCCCcEEEecCCCCchhccc
Confidence 344556799999999999864333
No 179
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=20.58 E-value=57 Score=22.34 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=32.9
Q ss_pred cCCCcEEEEEcCCCCcc-CHHHHHHHHHhC-CCcEEEEeCCCCCCCccCCCHHHHHHHHH
Q 032179 74 ENKVKLYVIQGDRDQVI-PIECSINIRRKV-PNAEVTIVPNANHNSVILGREKDFTETLE 131 (146)
Q Consensus 74 ~i~~P~Lii~G~~D~~v-~~~~~~~l~~~~-p~~~~~~i~~aGH~~~~~e~p~~~~~~i~ 131 (146)
.+.+|+.++.|+.|... +........+.. ...+...++ ++|+.+..+.+..+.+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~-g~H~~~~~~~~~~~~~~~~ 209 (212)
T smart00824 151 PVAAPTLLVRASEPLAEWPDEDPDGWRAHWPLPHTVVDVP-GDHFTMMEEHAAATARAVH 209 (212)
T ss_pred CCCCCEEEEeccCCCCCCCCCCcccccCCCCCCceeEEcc-CchHHHHHHhHHHHHHHHH
Confidence 37789999999998754 222222222222 356777887 5687752344454554443
No 180
>COG3757 Acm Lyzozyme M1 (1,4-beta-N-acetylmuramidase) [Cell envelope biogenesis, outer membrane]
Probab=20.44 E-value=3.2e+02 Score=21.00 Aligned_cols=57 Identities=14% Similarity=0.038 Sum_probs=40.5
Q ss_pred cCHHHHHHHHHhCCCc-----EEEEeCCCCCCCccCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 032179 90 IPIECSINIRRKVPNA-----EVTIVPNANHNSVILGREKDFTETLEQIWVSSADINGTGPG 146 (146)
Q Consensus 90 v~~~~~~~l~~~~p~~-----~~~~i~~aGH~~~~~e~p~~~~~~i~~fl~~~~~~~~~~~~ 146 (146)
.+...++.....+|.. ..+-++..|.++.....++...+.+..|+..+..+.++.||
T Consensus 129 ~a~~~a~~fl~~v~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~F~~~l~~~~g~~p~ 190 (269)
T COG3757 129 PAGNQARWFLSNVPGARVFYPPVLDYEVNGYWSDVRPNMEQMNAGVLAFLDKLEKLGGKKPG 190 (269)
T ss_pred CHHHHHHHHHHhcccccccCCceeeeccCCCccccccCHHHHHHHHHHHHHHHHHhCCCCce
Confidence 4455556666666633 35678888888764557788999999999988767676664
No 181
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=20.05 E-value=1.4e+02 Score=24.24 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCCccCHHHHHHHHHhCC----CcEEEEeCCCCCCC
Q 032179 77 VKLYVIQGDRDQVIPIECSINIRRKVP----NAEVTIVPNANHNS 117 (146)
Q Consensus 77 ~P~Lii~G~~D~~v~~~~~~~l~~~~p----~~~~~~i~~aGH~~ 117 (146)
..+.+-.|..|..+ .+..+.+++.+. +.++.+++| ||..
T Consensus 350 lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G-GHd~ 392 (411)
T PRK10439 350 LRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG-GHDA 392 (411)
T ss_pred ceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-CcCH
Confidence 45777789888644 345566766653 577888886 7864
Done!