BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032180
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WYI|A Chain A, Human Triosephosphate Isomerase Of New Crystal Form
pdb|1WYI|B Chain B, Human Triosephosphate Isomerase Of New Crystal Form
pdb|2JK2|A Chain A, Structural Basis Of Human Triosephosphate Isomerase
Deficiency. Crystal Structure Of The Wild Type Enzyme.
pdb|2JK2|B Chain B, Structural Basis Of Human Triosephosphate Isomerase
Deficiency. Crystal Structure Of The Wild Type Enzyme
Length = 250
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 50 ASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
A S KFFVGGNWK NG K+S+ +L+ LN AK+ AD
Sbjct: 3 APSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADT 39
>pdb|1HTI|A Chain A, Crystal Structure Of Recombinant Human Triosephosphate
Isomerase At 2.8 Angstroms Resolution. Triosephosphate
Isomerase Related Human Genetic Disorders And
Comparison With The Trypanosomal Enzyme
pdb|1HTI|B Chain B, Crystal Structure Of Recombinant Human Triosephosphate
Isomerase At 2.8 Angstroms Resolution. Triosephosphate
Isomerase Related Human Genetic Disorders And
Comparison With The Trypanosomal Enzyme
Length = 248
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 50 ASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
A S KFFVGGNWK NG K+S+ +L+ LN AK+ AD
Sbjct: 1 APSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADT 37
>pdb|2VOM|A Chain A, Structural Basis Of Human Triosephosphate Isomerase
Deficiency. Mutation E104d And Correlation To Solvent
Perturbation.
pdb|2VOM|B Chain B, Structural Basis Of Human Triosephosphate Isomerase
Deficiency. Mutation E104d And Correlation To Solvent
Perturbation.
pdb|2VOM|C Chain C, Structural Basis Of Human Triosephosphate Isomerase
Deficiency. Mutation E104d And Correlation To Solvent
Perturbation.
pdb|2VOM|D Chain D, Structural Basis Of Human Triosephosphate Isomerase
Deficiency. Mutation E104d And Correlation To Solvent
Perturbation
Length = 250
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 50 ASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
A S KFFVGGNWK NG K+S+ +L+ LN AK+ AD
Sbjct: 3 APSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADT 39
>pdb|1R2R|A Chain A, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2R|B Chain B, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2R|C Chain C, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2R|D Chain D, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2S|A Chain A, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2S|B Chain B, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2S|C Chain C, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2S|D Chain D, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2T|A Chain A, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
pdb|1R2T|B Chain B, Crystal Structure Of Rabbit Muscle Triosephosphate
Isomerase
Length = 248
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 50 ASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
A S KFFVGGNWK NG K+++ +L++ LN AK+ AD
Sbjct: 1 APSRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADT 37
>pdb|1SW3|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6
Mutant T175v
pdb|1SW3|B Chain B, Triosephosphate Isomerase From Gallus Gallus, Loop 6
Mutant T175v
Length = 248
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ KFFVGGNWK NG K+S+ +L+ LN AKL AD
Sbjct: 2 APRKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADT 37
>pdb|1SW0|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6
Hinge Mutant K174l, T175w
pdb|1SW0|B Chain B, Triosephosphate Isomerase From Gallus Gallus, Loop 6
Hinge Mutant K174l, T175w
Length = 248
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ KFFVGGNWK NG K+S+ +L+ LN AKL AD
Sbjct: 2 APRKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADT 37
>pdb|1SSD|A Chain A, Understanding Protein Lids: Structural Analysis Of
Active Hinge Mutants In Triosephosphate Isomerase
pdb|1SSD|B Chain B, Understanding Protein Lids: Structural Analysis Of
Active Hinge Mutants In Triosephosphate Isomerase
pdb|1SSG|A Chain A, Understanding Protein Lids: Structural Analysis Of
Active Hinge Mutants In Triosephosphate Isomerase
pdb|1SSG|B Chain B, Understanding Protein Lids: Structural Analysis Of
Active Hinge Mutants In Triosephosphate Isomerase
Length = 247
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ KFFVGGNWK NG K+S+ +L+ LN AKL AD
Sbjct: 1 APRKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADT 36
>pdb|1TPW|A Chain A, Triosephosphate Isomerase Drinks Water To Keep Healthy
pdb|1TPW|B Chain B, Triosephosphate Isomerase Drinks Water To Keep Healthy
Length = 247
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ KFFVGGNWK NG K+S+ +L+ LN AKL AD
Sbjct: 1 APRKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADT 36
>pdb|1SW7|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6
Mutant K174n, T175s, A176s
pdb|1SW7|B Chain B, Triosephosphate Isomerase From Gallus Gallus, Loop 6
Mutant K174n, T175s, A176s
Length = 248
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ KFFVGGNWK NG K+S+ +L+ LN AKL AD
Sbjct: 2 APRKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADT 37
>pdb|1SQ7|A Chain A, Understanding Protein Lids: Structural Analysis Of
Active Hinge Mutants In Triosephosphate Isomerase
pdb|1SQ7|B Chain B, Understanding Protein Lids: Structural Analysis Of
Active Hinge Mutants In Triosephosphate Isomerase
Length = 247
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ KFFVGGNWK NG K+S+ +L+ LN AKL AD
Sbjct: 1 APRKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADT 36
>pdb|1TPC|1 Chain 1, Offset Of A Catalytic Lesion By A Bound Water Soluble
pdb|1TPC|2 Chain 2, Offset Of A Catalytic Lesion By A Bound Water Soluble
Length = 247
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ KFFVGGNWK NG K+S+ +L+ LN AKL AD
Sbjct: 1 APRKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADT 36
>pdb|1TPH|1 Chain 1, 1.8 Angstroms Crystal Structure Of Wild Type Chicken
Triosephosphate Isomerase-Phosphoglycolohydroxamate
Complex
pdb|1TPH|2 Chain 2, 1.8 Angstroms Crystal Structure Of Wild Type Chicken
Triosephosphate Isomerase-Phosphoglycolohydroxamate
Complex
pdb|8TIM|A Chain A, Triose Phosphate Isomerase
pdb|8TIM|B Chain B, Triose Phosphate Isomerase
Length = 247
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ KFFVGGNWK NG K+S+ +L+ LN AKL AD
Sbjct: 1 APRKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADT 36
>pdb|1SPQ|A Chain A, Understanding Protein Lids: Structural Analysis Of
Active Hinge Mutants In Triosephosphate Isomerase
pdb|1SPQ|B Chain B, Understanding Protein Lids: Structural Analysis Of
Active Hinge Mutants In Triosephosphate Isomerase
Length = 247
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ KFFVGGNWK NG K+S+ +L+ LN AKL AD
Sbjct: 1 APRKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADT 36
>pdb|1TPB|1 Chain 1, Offset Of A Catalytic Lesion By A Bound Water Soluble
pdb|1TPB|2 Chain 2, Offset Of A Catalytic Lesion By A Bound Water Soluble
Length = 247
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ KFFVGGNWK NG K+S+ +L+ LN AKL AD
Sbjct: 1 APRKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADT 36
>pdb|1SU5|A Chain A, Understanding Protein Lids: Structural Analysis Of
Active Hinge Mutants In Triosephosphate Isomerase
pdb|1SU5|B Chain B, Understanding Protein Lids: Structural Analysis Of
Active Hinge Mutants In Triosephosphate Isomerase
Length = 247
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ KFFVGGNWK NG K+S+ +L+ LN AKL AD
Sbjct: 1 APRKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADT 36
>pdb|1TPV|A Chain A, S96p Change Is A Second-Site Suppressor For H95n
Sluggish Mutant Triosephosphate Isomerase
pdb|1TPV|B Chain B, S96p Change Is A Second-Site Suppressor For H95n
Sluggish Mutant Triosephosphate Isomerase
Length = 247
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ KFFVGGNWK NG K+S+ +L+ LN AKL AD
Sbjct: 1 APRKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADT 36
>pdb|1TPU|A Chain A, S96p Change Is A Second-Site Suppressor For H95n
Sluggish Mutant Triosephosphate Isomerase
pdb|1TPU|B Chain B, S96p Change Is A Second-Site Suppressor For H95n
Sluggish Mutant Triosephosphate Isomerase
Length = 247
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ KFFVGGNWK NG K+S+ +L+ LN AKL AD
Sbjct: 1 APRKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADT 36
>pdb|3KRS|A Chain A, Structure Of Triosephosphate Isomerase From
Cryptosporidium Parvum At 1.55a Resolution
pdb|3KRS|B Chain B, Structure Of Triosephosphate Isomerase From
Cryptosporidium Parvum At 1.55a Resolution
Length = 271
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSLDAYLVIRFHCEHYVW 111
S K+FVGGN+KCNGTKES+ L+ ++E+ E+ + +SL LV F +
Sbjct: 23 SRKYFVGGNFKCNGTKESLKTLIDSFK--QVESSNSEVYVFPTSLHISLVKEFFGNDHPG 80
Query: 112 VYLL 115
V+ +
Sbjct: 81 VFKI 84
>pdb|1TIM|A Chain A, Structure Of Triose Phosphate Isomerase From Chicken
Muscle
pdb|1TIM|B Chain B, Structure Of Triose Phosphate Isomerase From Chicken
Muscle
Length = 247
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ KFFVGGNWK NG ++S+ +L+ L+ AKL AD
Sbjct: 1 APRKFFVGGNWKMNGKRKSLGELIHTLDGAKLSADT 36
>pdb|1I45|A Chain A, Yeast Triosephosphate Isomerase (Mutant)
pdb|1I45|B Chain B, Yeast Triosephosphate Isomerase (Mutant)
Length = 248
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 55 FFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
FFVGGN+K NG+K+SI ++V LN A + +V
Sbjct: 5 FFVGGNFKLNGSKQSIKEIVERLNTASIPENV 36
>pdb|1NF0|A Chain A, Triosephosphate Isomerase In Complex With Dhap
pdb|1NF0|B Chain B, Triosephosphate Isomerase In Complex With Dhap
pdb|1NEY|A Chain A, Triosephosphate Isomerase In Complex With Dhap
pdb|1NEY|B Chain B, Triosephosphate Isomerase In Complex With Dhap
Length = 247
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 55 FFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
FFVGGN+K NG+K+SI ++V LN A + +V
Sbjct: 4 FFVGGNFKLNGSKQSIKEIVERLNTASIPENV 35
>pdb|4FF7|A Chain A, Structure Of C126s Mutant Of Saccharomyces Cerevisiae
Triosephosphate Isomerase
pdb|4FF7|B Chain B, Structure Of C126s Mutant Of Saccharomyces Cerevisiae
Triosephosphate Isomerase
Length = 248
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 55 FFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
FFVGGN+K NG+K+SI ++V LN A + +V
Sbjct: 5 FFVGGNFKLNGSKQSIKEIVERLNTASIPENV 36
>pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosphase Isomerase:
The Role Of Histidine-95
pdb|3YPI|B Chain B, Electrophilic Catalysis In Triosephosphase Isomerase:
The Role Of Histidine-95
Length = 247
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 55 FFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
FFVGGN+K NG+K+SI ++V LN A + +V
Sbjct: 4 FFVGGNFKLNGSKQSIKEIVERLNTASIPENV 35
>pdb|1YPI|A Chain A, Structure Of Yeast Triosephosphate Isomerase At 1.9-
Angstroms Resolution
pdb|1YPI|B Chain B, Structure Of Yeast Triosephosphate Isomerase At 1.9-
Angstroms Resolution
pdb|2YPI|A Chain A, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At
2.5- Angstroms Resolution. Implications For Catalysis
pdb|2YPI|B Chain B, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At
2.5- Angstroms Resolution. Implications For Catalysis
pdb|7TIM|A Chain A, Structure Of The Triosephosphate Isomerase-
Phosphoglycolohydroxamate Complex: An Analogue Of The
Intermediate On The Reaction Pathway
pdb|7TIM|B Chain B, Structure Of The Triosephosphate Isomerase-
Phosphoglycolohydroxamate Complex: An Analogue Of The
Intermediate On The Reaction Pathway
Length = 247
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 55 FFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
FFVGGN+K NG+K+SI ++V LN A + +V
Sbjct: 4 FFVGGNFKLNGSKQSIKEIVERLNTASIPENV 35
>pdb|1M6J|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Entamoeba Histolytica
pdb|1M6J|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Entamoeba Histolytica
Length = 261
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 51 SSNKFFVGGNWKCNGT---KESITKLVSDLNDAKLEADV 86
+ KF VGGNWKCNGT E++TK V+ DA+L V
Sbjct: 2 GAGKFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKV 40
>pdb|3QSR|A Chain A, Crystal Structure Of Trichomonas Vaginalis
Triosephosphate Isomerase Tvag_497370 Gene (Ile-45
Variant)
Length = 255
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 55 FFVGGNWKCNG-TKESITKLVSDLNDAKLEADV 86
FFVGGNWK N T E KL+ LN AK+E +V
Sbjct: 7 FFVGGNWKANPKTVEEAEKLIEMLNGAKVEGNV 39
>pdb|1VGA|A Chain A, Structures Of Unligated And Inhibitor Complexes Of W168f
Mutant Of Triosephosphate Isomerase From Plasmodium
Falciparum
pdb|1VGA|B Chain B, Structures Of Unligated And Inhibitor Complexes Of W168f
Mutant Of Triosephosphate Isomerase From Plasmodium
Falciparum
pdb|1VGA|C Chain C, Structures Of Unligated And Inhibitor Complexes Of W168f
Mutant Of Triosephosphate Isomerase From Plasmodium
Falciparum
pdb|1VGA|D Chain D, Structures Of Unligated And Inhibitor Complexes Of W168f
Mutant Of Triosephosphate Isomerase From Plasmodium
Falciparum
pdb|1WOA|A Chain A, Structure Of The Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
With Glycerol-2-Phosphate
pdb|1WOA|B Chain B, Structure Of The Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
With Glycerol-2-Phosphate
pdb|1WOA|C Chain C, Structure Of The Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
With Glycerol-2-Phosphate
pdb|1WOA|D Chain D, Structure Of The Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
With Glycerol-2-Phosphate
pdb|1WOB|A Chain A, Structure Of A Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
To Sulfate
pdb|1WOB|B Chain B, Structure Of A Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
To Sulfate
pdb|1WOB|C Chain C, Structure Of A Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
To Sulfate
pdb|1WOB|D Chain D, Structure Of A Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
To Sulfate
Length = 248
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLND 79
+ K+FV NWKCNGT ESI L + N+
Sbjct: 2 ARKYFVAANWKCNGTLESIKSLTNSFNN 29
>pdb|3PWA|A Chain A, Structure Of C126a Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase
pdb|3PWA|B Chain B, Structure Of C126a Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase
Length = 248
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLND 79
+ K+FV NWKCNGT ESI L + N+
Sbjct: 2 ARKYFVAANWKCNGTLESIKSLTNSFNN 29
>pdb|3PVF|A Chain A, Structure Of C126s Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase Complexed With Pga
pdb|3PY2|A Chain A, Structure Of C126s Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase
pdb|3PY2|B Chain B, Structure Of C126s Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase
Length = 248
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLND 79
+ K+FV NWKCNGT ESI L + N+
Sbjct: 2 ARKYFVAANWKCNGTLESIKSLTNSFNN 29
>pdb|2VFF|A Chain A, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase
pdb|2VFF|B Chain B, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase
pdb|2VFG|A Chain A, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase With 3-
Phosphoglycerate Bound At The Dimer Interface
pdb|2VFG|B Chain B, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase With 3-
Phosphoglycerate Bound At The Dimer Interface
pdb|2VFG|C Chain C, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase With 3-
Phosphoglycerate Bound At The Dimer Interface
pdb|2VFG|D Chain D, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase With 3-
Phosphoglycerate Bound At The Dimer Interface
Length = 248
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLND 79
+ K+FV NWKCNGT ESI L + N+
Sbjct: 2 ARKYFVAANWKCNGTLESIKSLTNSFNN 29
>pdb|3PSW|A Chain A, Structure Of E97q Mutant Of Tim From Plasmodium
Falciparum
pdb|3PSW|B Chain B, Structure Of E97q Mutant Of Tim From Plasmodium
Falciparum
Length = 248
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLND 79
+ K+FV NWKCNGT ESI L + N+
Sbjct: 2 ARKYFVAANWKCNGTLESIKSLTNSFNN 29
>pdb|2VFD|A Chain A, Crystal Structure Of The F96s Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase
pdb|2VFD|B Chain B, Crystal Structure Of The F96s Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase
pdb|2VFE|A Chain A, Crystal Structure Of F96s Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase With
3-Phosphoglycerate Bound At The Dimer Interface
pdb|2VFE|B Chain B, Crystal Structure Of F96s Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase With
3-Phosphoglycerate Bound At The Dimer Interface
Length = 248
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLND 79
+ K+FV NWKCNGT ESI L + N+
Sbjct: 2 ARKYFVAANWKCNGTLESIKSLTNSFNN 29
>pdb|1YDV|A Chain A, Triosephosphate Isomerase (Tim)
pdb|1YDV|B Chain B, Triosephosphate Isomerase (Tim)
pdb|1M7O|A Chain A, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)
Compled To Substrate Analog 3-Phosphoglycerate (3pg)
pdb|1M7O|B Chain B, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)
Compled To Substrate Analog 3-Phosphoglycerate (3pg)
pdb|1M7P|A Chain A, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)
Compled To Substrate Analog Glycerol-3-Phosphate (G3p).
pdb|1M7P|B Chain B, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)
Compled To Substrate Analog Glycerol-3-Phosphate (G3p).
pdb|1LYX|A Chain A, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)-
Phosphoglycolate Complex
pdb|1LZO|A Chain A, Plasmodium Falciparum Triosephosphate Isomerase-
Phosphoglycolate Complex
pdb|1LZO|B Chain B, Plasmodium Falciparum Triosephosphate Isomerase-
Phosphoglycolate Complex
pdb|1LZO|C Chain C, Plasmodium Falciparum Triosephosphate Isomerase-
Phosphoglycolate Complex
pdb|1LZO|D Chain D, Plasmodium Falciparum Triosephosphate Isomerase-
Phosphoglycolate Complex
pdb|1O5X|A Chain A, Plasmodium Falciparum Tim Complexed To
2-Phosphoglycerate
pdb|1O5X|B Chain B, Plasmodium Falciparum Tim Complexed To
2-Phosphoglycerate
pdb|2VFI|A Chain A, Crystal Structure Of The Plasmodium Falciparum
Triosephosphate Isomerase In The Loop Closed State With
3- Phosphoglycerate Bound At The Active Site And
Interface
pdb|2VFI|B Chain B, Crystal Structure Of The Plasmodium Falciparum
Triosephosphate Isomerase In The Loop Closed State With
3- Phosphoglycerate Bound At The Active Site And
Interface
Length = 248
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLND 79
+ K+FV NWKCNGT ESI L + N+
Sbjct: 2 ARKYFVAANWKCNGTLESIKSLTNSFNN 29
>pdb|2VFH|A Chain A, Crystal Structure Of The F96w Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase Complexed With 3-
Phosphoglycerate
pdb|2VFH|B Chain B, Crystal Structure Of The F96w Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase Complexed With 3-
Phosphoglycerate
Length = 248
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLND 79
+ K+FV NWKCNGT ESI L + N+
Sbjct: 2 ARKYFVAANWKCNGTLESIKSLTNSFNN 29
>pdb|3PSV|A Chain A, Structure Of E97d Mutant Of Tim From Plasmodium
Falciparum
pdb|3PSV|B Chain B, Structure Of E97d Mutant Of Tim From Plasmodium
Falciparum
Length = 248
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLND 79
+ K+FV NWKCNGT ESI L + N+
Sbjct: 2 ARKYFVAANWKCNGTLESIKSLTNSFNN 29
>pdb|3QST|A Chain A, Crystal Structure Of Trichomonas Vaginalis
Triosephosphate Isomerase Tvag_096350 Gene (Val-45
Variant)
Length = 255
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 55 FFVGGNWKCNG-TKESITKLVSDLNDAKLEADV 86
FFVGGNWK N T + KLV LN AK+E +V
Sbjct: 7 FFVGGNWKANPKTVQEAEKLVEMLNGAKVEGNV 39
>pdb|1QDS|A Chain A, Superstable E65q Mutant Of Leishmania Mexicana
Triosephosphate Isomerase (Tim)
pdb|1IF2|A Chain A, X-Ray Structure Of Leishmania Mexicana Triosephosphate
Isomerase Complexed With Ipp
pdb|1N55|A Chain A, 0.83a Resolution Structure Of The E65q Mutant Of
Leishmania Mexicana Triosephosphate Isomerase Complexed
With 2-Phosphoglycolate
pdb|2VXN|A Chain A, E65q-Tim Complexed With Phosphoglycolohydroxamate At
0.82 A Resolution
pdb|2Y61|A Chain A, Crystal Structure Of Leishmanial E65q-Tim Complexed With
S-Glycidol Phosphate
pdb|2Y62|A Chain A, Crystal Structure Of Leishmanial E65q-Tim Complexed With
R-Glycidol Phosphate
pdb|2Y63|A Chain A, Crystal Structure Of Leishmanial E65q-Tim Complexed With
Bromohydroxyacetone Phosphate
Length = 251
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 49 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
M++ + NWKCNGT SI KLV N+ + DV
Sbjct: 1 MSAKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHDV 38
>pdb|2I9E|A Chain A, Structure Of Triosephosphate Isomerase Of Tenebrio
Molitor
pdb|2I9E|B Chain B, Structure Of Triosephosphate Isomerase Of Tenebrio
Molitor
pdb|2I9E|C Chain C, Structure Of Triosephosphate Isomerase Of Tenebrio
Molitor
pdb|2I9E|D Chain D, Structure Of Triosephosphate Isomerase Of Tenebrio
Molitor
Length = 259
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEAD 85
+ KF VGGNWK NG K+ I +++ L L D
Sbjct: 2 ARKFVVGGNWKMNGDKKQINEIIGFLKSGPLNQD 35
>pdb|3Q37|A Chain A, Identification Of Amino Acids That Account For
Long-Range Interactions In Proteins Using Two
Triosephosphate Isomerases From Pathogenic
Trypanosomes.
pdb|3Q37|B Chain B, Identification Of Amino Acids That Account For
Long-Range Interactions In Proteins Using Two
Triosephosphate Isomerases From Pathogenic
Trypanosomes.
pdb|3Q37|C Chain C, Identification Of Amino Acids That Account For
Long-Range Interactions In Proteins Using Two
Triosephosphate Isomerases From Pathogenic
Trypanosomes.
pdb|3Q37|D Chain D, Identification Of Amino Acids That Account For
Long-Range Interactions In Proteins Using Two
Triosephosphate Isomerases From Pathogenic Trypanosomes
Length = 251
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 49 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
MAS + NWKCNG+++S+++L+ N + DV
Sbjct: 1 MASKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDV 38
>pdb|1AMK|A Chain A, Leishmania Mexicana Triose Phosphate Isomerase
Length = 251
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 49 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
M++ + NWKCNGT SI KLV N+ + DV
Sbjct: 1 MSAKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHDV 38
>pdb|1CI1|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Trypanosoma Cruzi In Hexane
pdb|1CI1|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Trypanosoma Cruzi In Hexane
pdb|1SUX|A Chain A, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase From Trypanosoma Cruzi And
3-(2- Benzothiazolylthio)-1-propanesulfonic Acid
pdb|1SUX|B Chain B, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase From Trypanosoma Cruzi And
3-(2- Benzothiazolylthio)-1-propanesulfonic Acid
Length = 251
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 49 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
MAS + NWKCNG++ + L+ LN A + DV
Sbjct: 1 MASKPQPIAAANWKCNGSESLLVPLIETLNAATFDHDV 38
>pdb|2V5B|A Chain A, The Monomerization Of Triosephosphate Isomerase From
Trypanosoma Cruzi
Length = 244
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 49 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
MAS + NWKCNG++ + L+ LN A + DV
Sbjct: 1 MASKPQPIAAANWKCNGSESLLVPLIETLNAATFDHDV 38
>pdb|1MO0|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Triose
Phosphate Isomerase
pdb|1MO0|B Chain B, Structural Genomics Of Caenorhabditis Elegans: Triose
Phosphate Isomerase
Length = 275
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLN 78
+ KFFVGGNWK NG S+ +V+ LN
Sbjct: 22 TRKFFVGGNWKMNGDYASVDGIVTFLN 48
>pdb|3TH6|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Rhipicephalus (Boophilus) Microplus.
pdb|3TH6|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Rhipicephalus (Boophilus) Microplus
Length = 249
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
++ +F VGGNWK +G+K SI + + L A L+ +V
Sbjct: 2 AARRFCVGGNWKMHGSKNSIRDICNTLKGASLDPNV 37
>pdb|3KXQ|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Bartonella Henselae At 1.6a Resolution
pdb|3KXQ|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Bartonella Henselae At 1.6a Resolution
Length = 275
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 48 AMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSLDAYLVIR 103
+M+ + + F+ GNWK NGT ES+ +L + A + +D+G + L + A L+ R
Sbjct: 21 SMSPNIRPFIAGNWKMNGTGESLGELRAIA--AGISSDLGRLFEALICVPATLLSR 74
>pdb|2OMA|A Chain A, Crystallographic Analysis Of A Chemically Modified
Triosephosphate Isomerase From Trypanosoma Cruzi With
Dithiobenzylamine (dtba)
pdb|2OMA|B Chain B, Crystallographic Analysis Of A Chemically Modified
Triosephosphate Isomerase From Trypanosoma Cruzi With
Dithiobenzylamine (dtba)
Length = 250
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 50 ASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
AS + NWKCNG++ + L+ LN A + DV
Sbjct: 1 ASKPQPIAAANWKCNGSESLLVPLIETLNAATFDHDV 37
>pdb|2V0T|A Chain A, The A178l Mutation In The C-Terminal Hinge Of The
Flexible Loop-6 Of Triosephosphate Isomerase (Tim)
Induces A More Closed Conformation Of This Hinge Region
In Dimeric And Monomeric Tim
pdb|2V0T|B Chain B, The A178l Mutation In The C-Terminal Hinge Of The
Flexible Loop-6 Of Triosephosphate Isomerase (Tim)
Induces A More Closed Conformation Of This Hinge Region
In Dimeric And Monomeric Tim
pdb|2V0T|C Chain C, The A178l Mutation In The C-Terminal Hinge Of The
Flexible Loop-6 Of Triosephosphate Isomerase (Tim)
Induces A More Closed Conformation Of This Hinge Region
In Dimeric And Monomeric Tim
pdb|2V0T|D Chain D, The A178l Mutation In The C-Terminal Hinge Of The
Flexible Loop-6 Of Triosephosphate Isomerase (Tim)
Induces A More Closed Conformation Of This Hinge Region
In Dimeric And Monomeric Tim
pdb|2V0T|E Chain E, The A178l Mutation In The C-Terminal Hinge Of The
Flexible Loop-6 Of Triosephosphate Isomerase (Tim)
Induces A More Closed Conformation Of This Hinge Region
In Dimeric And Monomeric Tim
pdb|2V0T|F Chain F, The A178l Mutation In The C-Terminal Hinge Of The
Flexible Loop-6 Of Triosephosphate Isomerase (Tim)
Induces A More Closed Conformation Of This Hinge Region
In Dimeric And Monomeric Tim
pdb|2V0T|G Chain G, The A178l Mutation In The C-Terminal Hinge Of The
Flexible Loop-6 Of Triosephosphate Isomerase (Tim)
Induces A More Closed Conformation Of This Hinge Region
In Dimeric And Monomeric Tim
pdb|2V0T|H Chain H, The A178l Mutation In The C-Terminal Hinge Of The
Flexible Loop-6 Of Triosephosphate Isomerase (Tim)
Induces A More Closed Conformation Of This Hinge Region
In Dimeric And Monomeric Tim
pdb|2V2C|A Chain A, The A178l Mutation In The C-Terminal Hinge Of The
Flexible Loop-6 Of Triosephosphate Isomerase (Tim)
Induces A More Closed Conformation Of This Hinge Region
In Dimeric And Monomeric Tim
Length = 250
Score = 32.3 bits (72), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
S + NWKCNG+++S+++L+ N + DV
Sbjct: 2 SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDV 37
>pdb|4TIM|A Chain A, Crystallographic And Molecular Modeling Studies On
Trypanosomal Triosephosphate Isomerase: A Critical
Assessment Of The Predicted And Observed Structures Of
The Complex With 2-Phosphoglycerate
pdb|4TIM|B Chain B, Crystallographic And Molecular Modeling Studies On
Trypanosomal Triosephosphate Isomerase: A Critical
Assessment Of The Predicted And Observed Structures Of
The Complex With 2-Phosphoglycerate
pdb|5TIM|A Chain A, Refined 1.83 Angstroms Structure Of Trypanosomal
Triosephosphate Isomerase, Crystallized In The Presence
Of 2.4 M-Ammonium Sulphate. A Comparison With The
Structure Of The Trypanosomal Triosephosphate
Isomerase-Glycerol-3- Phosphate Complex
pdb|5TIM|B Chain B, Refined 1.83 Angstroms Structure Of Trypanosomal
Triosephosphate Isomerase, Crystallized In The Presence
Of 2.4 M-Ammonium Sulphate. A Comparison With The
Structure Of The Trypanosomal Triosephosphate
Isomerase-Glycerol-3- Phosphate Complex
pdb|6TIM|A Chain A, The Adaptability Of The Active Site Of Trypanosomal
Triosephosphate Isomerase As Observed In The Crystal
Structures Of Three Different Complexes
pdb|6TIM|B Chain B, The Adaptability Of The Active Site Of Trypanosomal
Triosephosphate Isomerase As Observed In The Crystal
Structures Of Three Different Complexes
pdb|1TRD|A Chain A, The Influence Of Crystal Packing On Crystallographic
Binding Studies: A New Crystal Form Of Trypanosomal Tim
pdb|1TRD|B Chain B, The Influence Of Crystal Packing On Crystallographic
Binding Studies: A New Crystal Form Of Trypanosomal Tim
pdb|1TPD|A Chain A, Structures Of The "open" And "closed" State Of
Trypanosomal Triosephosphate Isomerase, As Observed In
A New Crystal Form: Implications For The Reaction
Mechanism
pdb|1TPD|B Chain B, Structures Of The "open" And "closed" State Of
Trypanosomal Triosephosphate Isomerase, As Observed In
A New Crystal Form: Implications For The Reaction
Mechanism
pdb|1TPF|A Chain A, Comparison Of The Structures And The Crystal Contacts Of
Trypanosomal Triosephosphate Isomerase In Four
Different Crystal Forms
pdb|1TPF|B Chain B, Comparison Of The Structures And The Crystal Contacts Of
Trypanosomal Triosephosphate Isomerase In Four
Different Crystal Forms
pdb|1AG1|O Chain O, Monohydrogen Phosphate Binding To Trypanosomal
Triosephosphate Isomerase
pdb|1AG1|T Chain T, Monohydrogen Phosphate Binding To Trypanosomal
Triosephosphate Isomerase
pdb|1IIG|A Chain A, Structure Of Trypanosoma Brucei Brucei Triosephosphate
Isomerase Complexed With 3-Phosphonopropionate
pdb|1IIG|B Chain B, Structure Of Trypanosoma Brucei Brucei Triosephosphate
Isomerase Complexed With 3-Phosphonopropionate
pdb|1IIH|A Chain A, Structure Of Trypanosoma Brucei Brucei Triosephosphate
Isomerase Complexed With 3-Phosphoglycerate
pdb|1IIH|B Chain B, Structure Of Trypanosoma Brucei Brucei Triosephosphate
Isomerase Complexed With 3-Phosphoglycerate
pdb|2V5L|A Chain A, Structures Of The Open And Closed State Of Trypanosomal
Triosephosphate Isomerase: As Observed In A New Crystal
Form: Implications For The Reaction Mechanism
pdb|2V5L|B Chain B, Structures Of The Open And Closed State Of Trypanosomal
Triosephosphate Isomerase: As Observed In A New Crystal
Form: Implications For The Reaction Mechanism
Length = 250
Score = 32.3 bits (72), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
S + NWKCNG+++S+++L+ N + DV
Sbjct: 2 SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDV 37
>pdb|1KV5|A Chain A, Structure Of Trypanosoma Brucei Brucei Tim With The
Salt-Bridge- Forming Residue Arg191 Mutated To Ser
pdb|1KV5|B Chain B, Structure Of Trypanosoma Brucei Brucei Tim With The
Salt-Bridge- Forming Residue Arg191 Mutated To Ser
Length = 250
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
S + NWKCNG+++S+++L+ N + DV
Sbjct: 2 SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDV 37
>pdb|2J24|A Chain A, The Functional Role Of The Conserved Active Site Proline
Of Triosephosphate Isomerase
pdb|2J24|B Chain B, The Functional Role Of The Conserved Active Site Proline
Of Triosephosphate Isomerase
pdb|2J27|A Chain A, The Functional Role Of The Conserved Active Site Proline
Of Triosephosphate Isomerase
pdb|2J27|B Chain B, The Functional Role Of The Conserved Active Site Proline
Of Triosephosphate Isomerase
Length = 250
Score = 32.3 bits (72), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
S + NWKCNG+++S+++L+ N + DV
Sbjct: 2 SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDV 37
>pdb|3TIM|A Chain A, The Crystal Structure Of The "open" And The "closed"
Conformation Of The Flexible Loop Of Trypanosomal
Triosephosphate Isomerase
pdb|3TIM|B Chain B, The Crystal Structure Of The "open" And The "closed"
Conformation Of The Flexible Loop Of Trypanosomal
Triosephosphate Isomerase
pdb|1TSI|A Chain A, Structure Of The Complex Between Trypanosomal
Triosephosphate Isomerase And N-Hydroxy-4-Phosphono-
Butanamide: Binding At The Active Site Despite An
"open" Flexible Loop
pdb|1TSI|B Chain B, Structure Of The Complex Between Trypanosomal
Triosephosphate Isomerase And N-Hydroxy-4-Phosphono-
Butanamide: Binding At The Active Site Despite An
"open" Flexible Loop
pdb|1TPE| Chain , Triosephosphate Isomerase (E.C.5.3.1.1)
pdb|1TPE|A Chain A, Comparison Of The Structures And The Crystal Contacts Of
Trypanosomal Triosephosphate Isomerase In Four
Different Crystal Forms
Length = 250
Score = 32.3 bits (72), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
S + NWKCNG+++S+++L+ N + DV
Sbjct: 2 SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDV 37
>pdb|1TRI|A Chain A, The Crystal Structure Of An Engineered Monomeric
Triosephosphate Isomerase, Monotim: The Correct
Modelling Of An Eight-Residue Loop
Length = 243
Score = 32.3 bits (72), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
S + NWKCNG+++S+++L+ N + DV
Sbjct: 2 SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDV 37
>pdb|1MSS|A Chain A, Large Scale Structural Rearrangements Of The Front Loops
In Monomerised Triosephosphate Isomerase, As Deduced
From The Comparison Of The Structural Properties Of
Monotim And Its Point Mutation Variant Monoss
pdb|1MSS|B Chain B, Large Scale Structural Rearrangements Of The Front Loops
In Monomerised Triosephosphate Isomerase, As Deduced
From The Comparison Of The Structural Properties Of
Monotim And Its Point Mutation Variant Monoss
pdb|1TTJ|A Chain A, Three New Crystal Structures Of Point Mutation Variants
Of Monotim: Conformational Flexibility Of Loop-1,Loop-4
And Loop-8
Length = 243
Score = 32.3 bits (72), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
S + NWKCNG+++S+++L+ N + DV
Sbjct: 2 SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDV 37
>pdb|2Y70|A Chain A, Crystallographic Structure Of Gm23, Mutant G89d, An
Example Of Catalytic Migration From Tim To Thiamin
Phosphate Synthase.
pdb|2Y70|B Chain B, Crystallographic Structure Of Gm23, Mutant G89d, An
Example Of Catalytic Migration From Tim To Thiamin
Phosphate Synthase.
pdb|2Y70|C Chain C, Crystallographic Structure Of Gm23, Mutant G89d, An
Example Of Catalytic Migration From Tim To Thiamin
Phosphate Synthase.
pdb|2Y70|D Chain D, Crystallographic Structure Of Gm23, Mutant G89d, An
Example Of Catalytic Migration From Tim To Thiamin
Phosphate Synthase
Length = 245
Score = 32.3 bits (72), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
S + NWKCNG+++S+++L+ N + DV
Sbjct: 2 SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDV 37
>pdb|1TCD|A Chain A, Trypanosoma Cruzi Triosephosphate Isomerase
pdb|1TCD|B Chain B, Trypanosoma Cruzi Triosephosphate Isomerase
Length = 249
Score = 32.3 bits (72), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
S + NWKCNG++ + L+ LN A + DV
Sbjct: 1 SKPQPIAAANWKCNGSESLLVPLIETLNAATFDHDV 36
>pdb|2WSQ|A Chain A, Monotim Mutant Rmm0-1, Dimeric Form.
pdb|2WSQ|B Chain B, Monotim Mutant Rmm0-1, Dimeric Form.
pdb|2WSQ|C Chain C, Monotim Mutant Rmm0-1, Dimeric Form.
pdb|2WSQ|D Chain D, Monotim Mutant Rmm0-1, Dimeric Form
Length = 242
Score = 32.3 bits (72), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
S + NWKCNG+++S+++L+ N + DV
Sbjct: 1 SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDV 36
>pdb|2WSR|A Chain A, Monotim Mutant Rmm0-1, Monomeric Form
Length = 242
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
S + NWKCNG+++S+++L+ N + DV
Sbjct: 1 SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDV 36
>pdb|1TTI|A Chain A, Three New Crystal Structures Of Point Mutation Variants
Of Monotim: Conformational Flexibility Of Loop-1,Loop-4
And Loop-8
Length = 243
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
S + NWKCNG+++S+++L+ N + DV
Sbjct: 2 SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDV 37
>pdb|1AW1|A Chain A, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW1|B Chain B, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW1|D Chain D, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW1|E Chain E, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW1|G Chain G, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW1|H Chain H, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW1|J Chain J, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW1|K Chain K, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW2|A Chain A, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|B Chain B, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|D Chain D, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|E Chain E, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|G Chain G, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|H Chain H, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|J Chain J, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|K Chain K, Triosephosphate Isomerase Of Vibrio Marinus
Length = 256
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 59 GNWKCNGTKESITKLVSDLNDAKLEADVG 87
GNWK NG+KE + L++ LN A+LE G
Sbjct: 8 GNWKLNGSKEMVVDLLNGLN-AELEGVTG 35
>pdb|2Y6Z|A Chain A, Crystallographic Structure Of Gm23 An Example Of
Catalytic Migration From Tim To Thiamin Phosphate
Synthase
Length = 256
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 60 NWKCNGTKESITKLVSDLNDAKLEADV 86
NWKCNG +S+++L+ N + DV
Sbjct: 22 NWKCNGGGQSLSELIDLFNSTSINHDV 48
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 29.3 bits (64), Expect = 0.77, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 48 AMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLS 94
AMA + + +GGN++C ++E++ S N DVG+M+ L+S
Sbjct: 66 AMAETLEL-LGGNYQCTSSRENLMYQASVFNQ-----DVGKMLQLMS 106
>pdb|1ML1|A Chain A, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of
A Seven Residue Loop
pdb|1ML1|C Chain C, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of
A Seven Residue Loop
pdb|1ML1|E Chain E, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of
A Seven Residue Loop
pdb|1ML1|G Chain G, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of
A Seven Residue Loop
pdb|1ML1|I Chain I, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of
A Seven Residue Loop
pdb|1ML1|K Chain K, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of
A Seven Residue Loop
Length = 243
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
S + NWKC+G+ +S+++L+ N + DV
Sbjct: 2 SKPQPIAAANWKCSGSPDSLSELIDLFNSTSINHDV 37
>pdb|4IOT|A Chain A, High-resolution Structure Of Triosephosphate Isomerase
From E. Coli
pdb|4IOT|B Chain B, High-resolution Structure Of Triosephosphate Isomerase
From E. Coli
Length = 255
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 56 FVGGNWKCNGTKESITKLVSDLN 78
V GNWK NG++ + +LVS+L
Sbjct: 5 LVMGNWKLNGSRHMVHELVSNLR 27
>pdb|1TMH|A Chain A, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal
Structure Of A Chimeric E. Coli Tim Having The Eighth
(beta-alpha)-unit Replaced By The Equivalent Unit Of
Chicken Tim
pdb|1TMH|B Chain B, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal
Structure Of A Chimeric E. Coli Tim Having The Eighth
(beta-alpha)-unit Replaced By The Equivalent Unit Of
Chicken Tim
pdb|1TMH|C Chain C, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal
Structure Of A Chimeric E. Coli Tim Having The Eighth
(beta-alpha)-unit Replaced By The Equivalent Unit Of
Chicken Tim
pdb|1TMH|D Chain D, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal
Structure Of A Chimeric E. Coli Tim Having The Eighth
(beta-alpha)-unit Replaced By The Equivalent Unit Of
Chicken Tim
Length = 254
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 56 FVGGNWKCNGTKESITKLVSDLN 78
V GNWK NG++ + +LVS+L
Sbjct: 5 LVMGNWKLNGSRHMVHELVSNLR 27
>pdb|1TRE|A Chain A, The Structure Of Triosephosphate Isomerase From
Escherichia Coli Determined At 2.6 Angstrom Resolution
pdb|1TRE|B Chain B, The Structure Of Triosephosphate Isomerase From
Escherichia Coli Determined At 2.6 Angstrom Resolution
Length = 255
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 56 FVGGNWKCNGTKESITKLVSDLN 78
V GNWK NG++ + +LVS+L
Sbjct: 5 LVMGNWKLNGSRHMVHELVSNLR 27
>pdb|2BTM|A Chain A, Does The His12-Lys13 Pair Play A Role In The Adaptation
Of Thermophilic Tims To High Temperatures?
pdb|2BTM|B Chain B, Does The His12-Lys13 Pair Play A Role In The Adaptation
Of Thermophilic Tims To High Temperatures?
Length = 252
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 53 NKFFVGGNWKCNGTKESITKLVSDLNDAKLEAD 85
K + GNWK NGT + V D+ AD
Sbjct: 1 RKPIIAGNWKMNGTLAEAVQFVEDVKGHVPPAD 33
>pdb|2DP3|A Chain A, Crystal Structure Of A Double Mutant (C202aA198V) OF
TRIOSEPHOSPHATE Isomerase From Giardia Lamblia
Length = 257
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 51 SSNKFFVGGNWKCNGT 66
+ + F+GGN+KCNG+
Sbjct: 2 PARRPFIGGNFKCNGS 17
>pdb|2YC8|A Chain A, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|B Chain B, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|C Chain C, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|D Chain D, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|E Chain E, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|F Chain F, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|G Chain G, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|H Chain H, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|I Chain I, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|J Chain J, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|K Chain K, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|L Chain L, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|M Chain M, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|N Chain N, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|O Chain O, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|P Chain P, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|Q Chain Q, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|R Chain R, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|S Chain S, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|T Chain T, Crystal Structure Of A Double Mutant (C202a And C222n)
Of Triosephosphate Isomerase From Giardia Lamblia
Length = 255
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 51 SSNKFFVGGNWKCNGT 66
+ + F+GGN+KCNG+
Sbjct: 2 PARRPFIGGNFKCNGS 17
>pdb|2YC6|A Chain A, Crystal Structure Of A Triple Mutant (A198v, C202a And
C222n) Of Triosephosphate Isomerase From Giardia
Lamblia Complexed With 2-Phosphoglycolic Acid
Length = 257
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 51 SSNKFFVGGNWKCNGT 66
+ + F+GGN+KCNG+
Sbjct: 2 PARRPFIGGNFKCNGS 17
>pdb|2YC7|A Chain A, Crystal Structure Of A Mutant (C202a) Of Triosephosphate
Isomerase From Giardia Lamblia Complexed With
2-Phosphoglycolic Acid
Length = 257
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 51 SSNKFFVGGNWKCNGT 66
+ + F+GGN+KCNG+
Sbjct: 2 PARRPFIGGNFKCNGS 17
>pdb|3SDJ|A Chain A, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|B Chain B, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|C Chain C, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|D Chain D, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|E Chain E, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|F Chain F, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|G Chain G, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|H Chain H, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|I Chain I, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|J Chain J, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|K Chain K, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|L Chain L, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|M Chain M, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|N Chain N, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
Length = 448
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 46 VVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSLDAYLVIRFH 105
++ SS G+++ G ++ +++ D D L E+ LL S D VIR++
Sbjct: 40 ILGYGSSGTVVFQGSFQ--GRPVAVKRMLIDFCDIALM----EIKLLTESDDHPNVIRYY 93
Query: 106 CEHYVWVYLLVA-DVCSILEKDLV 128
C +L +A ++C++ +DLV
Sbjct: 94 CSETTDRFLYIALELCNLNLQDLV 117
>pdb|3FBV|A Chain A, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|B Chain B, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|C Chain C, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|D Chain D, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|E Chain E, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|F Chain F, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|G Chain G, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|H Chain H, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|I Chain I, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|J Chain J, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|K Chain K, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|L Chain L, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|M Chain M, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|N Chain N, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3SDM|A Chain A, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|B Chain B, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|C Chain C, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|D Chain D, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|E Chain E, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|F Chain F, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|G Chain G, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
Length = 448
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 46 VVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSLDAYLVIRFH 105
++ SS G+++ G ++ +++ D D L E+ LL S D VIR++
Sbjct: 40 ILGYGSSGTVVFQGSFQ--GRPVAVKRMLIDFCDIALM----EIKLLTESDDHPNVIRYY 93
Query: 106 CEHYVWVYLLVA-DVCSILEKDLV 128
C +L +A ++C++ +DLV
Sbjct: 94 CSETTDRFLYIALELCNLNLQDLV 117
>pdb|2RIO|A Chain A, Structure Of The Dual Enzyme Ire1 Reveals The Basis For
Catalysis And Regulation Of Non-conventional Splicing
pdb|2RIO|B Chain B, Structure Of The Dual Enzyme Ire1 Reveals The Basis For
Catalysis And Regulation Of Non-conventional Splicing
Length = 434
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 46 VVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSLDAYLVIRFH 105
++ SS G+++ G ++ +++ D D L E+ LL S D VIR++
Sbjct: 22 ILGYGSSGTVVFQGSFQ--GRPVAVKRMLIDFCDIAL----MEIKLLTESDDHPNVIRYY 75
Query: 106 CEHYVWVYLLVA-DVCSILEKDLV 128
C +L +A ++C++ +DLV
Sbjct: 76 CSETTDRFLYIALELCNLNLQDLV 99
>pdb|3LJ0|A Chain A, Ire1 Complexed With Adp And Quercetin
pdb|3LJ0|B Chain B, Ire1 Complexed With Adp And Quercetin
pdb|3LJ1|A Chain A, Ire1 Complexed With Cdk12 INHIBITOR III
pdb|3LJ1|B Chain B, Ire1 Complexed With Cdk12 INHIBITOR III
pdb|3LJ2|A Chain A, Ire1 Complexed With Jak Inhibitor I
pdb|3LJ2|B Chain B, Ire1 Complexed With Jak Inhibitor I
Length = 434
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 46 VVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSLDAYLVIRFH 105
++ SS G+++ G ++ +++ D D L E+ LL S D VIR++
Sbjct: 22 ILGYGSSGTVVFQGSFQ--GRPVAVKRMLIDFCDIAL----MEIKLLTESDDHPNVIRYY 75
Query: 106 CEHYVWVYLLVA-DVCSILEKDLV 128
C +L +A ++C++ +DLV
Sbjct: 76 CSETTDRFLYIALELCNLNLQDLV 99
>pdb|4GOU|A Chain A, Crystal Structure Of An Rgs-rhogef From Entamoeba
Histolytica
Length = 518
Score = 25.8 bits (55), Expect = 8.8, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 72 KLVSDLNDAKLEADVGEMMLLLSSLDAYLVIRFHCEHYVWVYLLVADVCSILEKD 126
K +S L +AK + VGE L S L ++ R++ H V +A +CSI D
Sbjct: 243 KFISSLQEAKADEKVGEK--LNSGLHFLVLYRYYLRH---VPKNIAKLCSIGXTD 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,285,094
Number of Sequences: 62578
Number of extensions: 93858
Number of successful extensions: 266
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 77
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)