Query 032180
Match_columns 146
No_of_seqs 132 out of 1179
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 10:40:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02429 triosephosphate isome 99.9 2.5E-27 5.5E-32 201.9 10.3 128 8-137 8-158 (315)
2 KOG1643 Triosephosphate isomer 99.9 9E-24 2E-28 171.9 6.8 86 52-137 2-97 (247)
3 PRK15492 triosephosphate isome 99.9 3.3E-22 7.1E-27 166.5 8.1 86 52-137 1-105 (260)
4 PLN02561 triosephosphate isome 99.9 4.5E-22 9.8E-27 165.2 8.0 86 52-137 2-99 (253)
5 PRK14566 triosephosphate isome 99.9 7.3E-22 1.6E-26 164.6 8.1 88 50-137 1-106 (260)
6 PRK14567 triosephosphate isome 99.9 9.5E-22 2.1E-26 163.4 7.9 84 54-137 2-96 (253)
7 PRK00042 tpiA triosephosphate 99.8 1.9E-21 4.1E-26 161.0 8.1 85 53-137 1-97 (250)
8 PTZ00333 triosephosphate isome 99.8 2.1E-21 4.6E-26 161.2 8.0 87 51-137 2-100 (255)
9 PF00121 TIM: Triosephosphate 99.8 3.5E-21 7.6E-26 158.7 6.6 82 55-136 1-94 (244)
10 PRK14565 triosephosphate isome 99.8 5.9E-21 1.3E-25 157.3 7.8 84 54-137 2-96 (237)
11 cd00311 TIM Triosephosphate is 99.8 9.1E-21 2E-25 156.2 7.8 84 55-138 1-96 (242)
12 PRK14905 triosephosphate isome 99.8 9.4E-21 2E-25 163.7 7.9 84 53-136 3-105 (355)
13 COG0149 TpiA Triosephosphate i 99.8 1.7E-20 3.6E-25 155.9 7.8 85 52-136 1-98 (251)
14 PRK13962 bifunctional phosphog 99.8 3.8E-20 8.3E-25 169.9 8.1 86 52-137 396-492 (645)
15 TIGR00419 tim triosephosphate 99.8 6.9E-20 1.5E-24 148.1 7.2 80 56-137 1-92 (205)
16 PRK04302 triosephosphate isome 99.6 4.4E-16 9.5E-21 125.3 7.6 84 52-135 1-94 (223)
17 KOG4777 Aspartate-semialdehyde 36.9 43 0.00093 29.3 3.5 39 53-92 44-84 (361)
18 PLN03155 cytochrome c oxidase 31.4 35 0.00075 23.2 1.6 26 55-80 28-55 (63)
19 PLN03070 photosystem I reactio 20.5 67 0.0015 24.7 1.6 19 1-19 1-19 (128)
No 1
>PLN02429 triosephosphate isomerase
Probab=99.94 E-value=2.5e-27 Score=201.87 Aligned_cols=128 Identities=49% Similarity=0.690 Sum_probs=99.7
Q ss_pred cccccCCcccCCCCc---------cccccccccce---e-cccCCCCCcchhHhhhhcCCceeEeeecccCCHHHHHHHH
Q 032180 8 NCAQFSGLRRSSPTQ---------SFSQHVNSHLR---L-FSSRRPRRGSSVVAMASSNKFFVGGNWKCNGTKESITKLV 74 (146)
Q Consensus 8 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~---~-~~~~~~~r~~~~~~m~~~rk~lViGNWKMNgt~aei~eLl 74 (146)
..++|.|+||.+++. ++++.+...++ . ++.+++.|+ +++|++.||+||+||||||++.+++.+|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~k~~i~gNWKmn~t~~~~~~~~ 85 (315)
T PLN02429 8 APPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPRG--VVAMAGSGKFFVGGNWKCNGTKDSIAKLI 85 (315)
T ss_pred cCcccccccCCCccccccccccccchhhccccccccccccccccccccc--cccccccCCEEEEEECCcCCCHHHHHHHH
Confidence 446799999999652 22222222111 1 344788888 99999989999999999999999999999
Q ss_pred HHHhhcccCCCccEEEechHH-H---HHHhcCCee-eecccCccC---CccccchhhhcCC--cEEEEEcccc
Q 032180 75 SDLNDAKLEADVGEMMLLLSS-L---DAYLVIRFH-CEHYVWVYL---LVADVCSILEKDL--VWAILVVNSH 137 (146)
Q Consensus 75 ~~L~~~~~~~~VdVvVaPP~t-v---~~~l~~~I~-GAQNV~~~~---~g~~~~~~~~~~~--~~~~~~~~~~ 137 (146)
++++......+++|+|||||+ + .+.+++.|. |||||++++ .|||||++||||+ .||||||--+
T Consensus 86 ~~l~~~~~~~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~GayTGEVSa~mLkd~Gv~~ViiGHSER 158 (315)
T PLN02429 86 SDLNSATLEADVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSER 158 (315)
T ss_pred HHHHhcccCCCceEEEeCCHHHHHHHHHHhcCCCeEEecccCCCCCCCccCcCCHHHHHHcCCCEEEeCcccc
Confidence 999764333469999999997 3 334444688 999999986 5999999999999 9999999643
No 2
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=9e-24 Score=171.92 Aligned_cols=86 Identities=33% Similarity=0.543 Sum_probs=76.4
Q ss_pred cCCceeEeeecccCCHHHHHHHHHHHhhcccCCCccEEEechHH----HHHHhcCCee-eecccCccC---Cccccchhh
Q 032180 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSS----LDAYLVIRFH-CEHYVWVYL---LVADVCSIL 123 (146)
Q Consensus 52 ~rk~lViGNWKMNgt~aei~eLl~~L~~~~~~~~VdVvVaPP~t----v~~~l~~~I~-GAQNV~~~~---~g~~~~~~~ 123 (146)
.||+||+||||||++++++.++++.|+....+.++||+|+||++ ++..++..|. +||||+... .|||||++|
T Consensus 2 arkffvgGNwKmngs~~s~~eii~~ln~a~~~~~vevvi~pP~~Yl~~ak~~l~~~i~v~aQn~~~~k~GafTGEiS~~m 81 (247)
T KOG1643|consen 2 ARKFFVGGNWKMNGSKQSIKEIIKTLNAAKLPANVEVVIAPPAPYLDYAKSKLKPDIGVAAQNCYKVKSGAFTGEISAEM 81 (247)
T ss_pred CcceEecccccccCcHHHHHHHHHHhhhccCCCCCcEEEeCChhHHHHHHHhCCccceeecceeeeccCccccCccCHHH
Confidence 37999999999999999999999999988777789999999996 4556667899 999999865 599999999
Q ss_pred hcCC--cEEEEEcccc
Q 032180 124 EKDL--VWAILVVNSH 137 (146)
Q Consensus 124 ~~~~--~~~~~~~~~~ 137 (146)
+||+ .||||||.-.
T Consensus 82 lkd~G~~wVIlGHSER 97 (247)
T KOG1643|consen 82 LKDLGAEWVILGHSER 97 (247)
T ss_pred HHhCCCCEEEecchhh
Confidence 9999 9999999643
No 3
>PRK15492 triosephosphate isomerase; Provisional
Probab=99.87 E-value=3.3e-22 Score=166.50 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=71.2
Q ss_pred cCCceeEeeecccCCHHHHHHHHHHHhhcc--c--CCCccEEEechHH----HHHHhc-----CCee-eecccCccC---
Q 032180 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAK--L--EADVGEMMLLLSS----LDAYLV-----IRFH-CEHYVWVYL--- 114 (146)
Q Consensus 52 ~rk~lViGNWKMNgt~aei~eLl~~L~~~~--~--~~~VdVvVaPP~t----v~~~l~-----~~I~-GAQNV~~~~--- 114 (146)
|||++|+||||||++.+++.+|++++.... . ..++++++||||+ +.+.+. .+|. |||||++++
T Consensus 1 Mrk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~P~~~~L~~~~~~~~~~~~~~~i~vgAQnv~~~~~Ga 80 (260)
T PRK15492 1 MKKIYFGTNLKMYKGIADATDFLAKLSELADDIPADKDIELFVIPSFTAIQDAIAATLAIPHDHPIIIGAQNMNPNDNGQ 80 (260)
T ss_pred CCCCEEEEECCcCCCHHHHHHHHHHHHhhhhhcccCCCceEEEECCHHHHHHHHHHhhcccCCCceEEEeccCCCCCCCC
Confidence 489999999999999999999999985531 1 2468999999997 333331 3688 999999986
Q ss_pred CccccchhhhcCC--cEEEEEcccc
Q 032180 115 LVADVCSILEKDL--VWAILVVNSH 137 (146)
Q Consensus 115 ~g~~~~~~~~~~~--~~~~~~~~~~ 137 (146)
.|||||++||||+ .||||||--+
T Consensus 81 ~TGevSa~mLkd~G~~~viiGHSER 105 (260)
T PRK15492 81 FTGDISPLMLKEIGTQLVMIGHSER 105 (260)
T ss_pred ccCcCCHHHHHHcCCCEEEECcccc
Confidence 5999999999999 9999999643
No 4
>PLN02561 triosephosphate isomerase
Probab=99.86 E-value=4.5e-22 Score=165.22 Aligned_cols=86 Identities=34% Similarity=0.618 Sum_probs=71.8
Q ss_pred cCCceeEeeecccCCHHHHHHHHHHHhhccc--CCCccEEEechHH----HHHHhcCCee-eecccCccC---Cccccch
Q 032180 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKL--EADVGEMMLLLSS----LDAYLVIRFH-CEHYVWVYL---LVADVCS 121 (146)
Q Consensus 52 ~rk~lViGNWKMNgt~aei~eLl~~L~~~~~--~~~VdVvVaPP~t----v~~~l~~~I~-GAQNV~~~~---~g~~~~~ 121 (146)
.||+||+||||||++.+++.+|++.+..... ..+++|++||||+ +.+.++..|. |||||++++ .|||||+
T Consensus 2 ~rk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS~ 81 (253)
T PLN02561 2 ARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSEDVVEVVVSPPFVFLPLVKSLLRPDFQVAAQNCWVKKGGAFTGEISA 81 (253)
T ss_pred CCccEEEEECCcCCCHHHHHHHHHHHHhcccCccCCeeEEEeCCHHHHHHHHHHhccCCeEEeccccCcCCCCccCcCCH
Confidence 4789999999999999999999999965322 2468999999997 3333444688 999999976 5999999
Q ss_pred hhhcCC--cEEEEEcccc
Q 032180 122 ILEKDL--VWAILVVNSH 137 (146)
Q Consensus 122 ~~~~~~--~~~~~~~~~~ 137 (146)
+||||+ .||||||--+
T Consensus 82 ~mL~d~G~~~viiGHSER 99 (253)
T PLN02561 82 EMLVNLGIPWVILGHSER 99 (253)
T ss_pred HHHHHcCCCEEEECcccc
Confidence 999999 9999999654
No 5
>PRK14566 triosephosphate isomerase; Provisional
Probab=99.86 E-value=7.3e-22 Score=164.65 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=72.6
Q ss_pred hhcCCceeEeeecccCCHHHHHHHHHHHhhcccCCCccEEEechHH----HHHHhc-CC-------ee-eecccCccC--
Q 032180 50 ASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSS----LDAYLV-IR-------FH-CEHYVWVYL-- 114 (146)
Q Consensus 50 ~~~rk~lViGNWKMNgt~aei~eLl~~L~~~~~~~~VdVvVaPP~t----v~~~l~-~~-------I~-GAQNV~~~~-- 114 (146)
|+.||++|+||||||++.+++.+|++.+.......+++|+|||||+ +.+.++ .. |. |||||++++
T Consensus 1 ~~~rk~~i~gNWKmn~~~~~~~~~~~~l~~~~~~~~v~v~v~Pp~~~L~~~~~~~~~~~~~~~g~~i~v~AQnv~~~~~G 80 (260)
T PRK14566 1 MALRRPMVAGNWKMNGSAALAQELFKKFAGKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNVSQHDFG 80 (260)
T ss_pred CCCCCeEEEEECCcCcCHHHHHHHHHHHHhhcCCCCeeEEEECCHHHHHHHHHHhccCcccccCceEEEEecccccccCC
Confidence 3468899999999999999999999998654323469999999997 333333 23 88 999999976
Q ss_pred -CccccchhhhcCC--cEEEEEcccc
Q 032180 115 -LVADVCSILEKDL--VWAILVVNSH 137 (146)
Q Consensus 115 -~g~~~~~~~~~~~--~~~~~~~~~~ 137 (146)
.|||||++||||+ .||||||--+
T Consensus 81 a~TGevS~~mL~d~G~~~viiGHSER 106 (260)
T PRK14566 81 AYTGEVSGQMLKDAGCRYVIIGHSER 106 (260)
T ss_pred CccCccCHHHHHHcCCCEEEECcccc
Confidence 5899999999999 9999999644
No 6
>PRK14567 triosephosphate isomerase; Provisional
Probab=99.85 E-value=9.5e-22 Score=163.39 Aligned_cols=84 Identities=18% Similarity=0.298 Sum_probs=70.5
Q ss_pred CceeEeeecccCCHHHHHHHHHHHhhcccC-CCccEEEechHH-H---HHHhcCCee-eecccCccC---Cccccchhhh
Q 032180 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLE-ADVGEMMLLLSS-L---DAYLVIRFH-CEHYVWVYL---LVADVCSILE 124 (146)
Q Consensus 54 k~lViGNWKMNgt~aei~eLl~~L~~~~~~-~~VdVvVaPP~t-v---~~~l~~~I~-GAQNV~~~~---~g~~~~~~~~ 124 (146)
|+||+||||||++.+++.+|++++...... .+++|++||||+ + .+.++..|. |||||++++ .|||||++||
T Consensus 2 ~~~v~gNWKMn~~~~~~~~~~~~~~~~~~~~~~~~v~vaP~~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGEvS~~mL 81 (253)
T PRK14567 2 QKLIMGNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSVYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARML 81 (253)
T ss_pred CeEEEEECCcCCCHHHHHHHHHHHHhhccCCCCcEEEEeCCHHHHHHHHHHhcCCCEEEccccccccCCCccCcCCHHHH
Confidence 689999999999999999999998664332 468999999997 3 333444688 999999976 5999999999
Q ss_pred cCC--cEEEEEcccc
Q 032180 125 KDL--VWAILVVNSH 137 (146)
Q Consensus 125 ~~~--~~~~~~~~~~ 137 (146)
||+ .||||||--+
T Consensus 82 kd~G~~yviiGHSER 96 (253)
T PRK14567 82 EDIGCDYLLIGHSER 96 (253)
T ss_pred HHcCCCEEEECcccc
Confidence 999 9999999654
No 7
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=99.85 E-value=1.9e-21 Score=161.03 Aligned_cols=85 Identities=21% Similarity=0.245 Sum_probs=71.2
Q ss_pred CCceeEeeecccCCHHHHHHHHHHHhhcccC-CCccEEEechHH----HHHHhc-CCee-eecccCccC---Cccccchh
Q 032180 53 NKFFVGGNWKCNGTKESITKLVSDLNDAKLE-ADVGEMMLLLSS----LDAYLV-IRFH-CEHYVWVYL---LVADVCSI 122 (146)
Q Consensus 53 rk~lViGNWKMNgt~aei~eLl~~L~~~~~~-~~VdVvVaPP~t----v~~~l~-~~I~-GAQNV~~~~---~g~~~~~~ 122 (146)
||+||+||||||++..++.+|++.+...... .++++++||||+ +.+.++ ..|. |||||++++ .|||||++
T Consensus 1 ~~~~v~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~v~v~Pp~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGevS~~ 80 (250)
T PRK00042 1 RKPIIAGNWKMNKTLAEAKALVEELKAALPDADGVEVAVAPPFTALASVKEALKGSNIKLGAQNVHPEDSGAFTGEISAE 80 (250)
T ss_pred CCcEEEEEcccCcCHHHHHHHHHHHHhhccccCCeeEEEECCHHHHHHHHHHhcCCCeEEEecccccccCCCccCccCHH
Confidence 5789999999999999999999998654322 468999999997 334444 4788 999999976 59999999
Q ss_pred hhcCC--cEEEEEcccc
Q 032180 123 LEKDL--VWAILVVNSH 137 (146)
Q Consensus 123 ~~~~~--~~~~~~~~~~ 137 (146)
||||+ .||||||--+
T Consensus 81 mLkd~G~~~viiGHSER 97 (250)
T PRK00042 81 MLKDLGVKYVIIGHSER 97 (250)
T ss_pred HHHHCCCCEEEeCcccc
Confidence 99999 9999999643
No 8
>PTZ00333 triosephosphate isomerase; Provisional
Probab=99.85 E-value=2.1e-21 Score=161.15 Aligned_cols=87 Identities=33% Similarity=0.543 Sum_probs=73.1
Q ss_pred hcCCceeEeeecccCCHHHHHHHHHHHhhcccC-CCccEEEechHH-H---HHHhc-CCee-eecccCccC---Cccccc
Q 032180 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLE-ADVGEMMLLLSS-L---DAYLV-IRFH-CEHYVWVYL---LVADVC 120 (146)
Q Consensus 51 ~~rk~lViGNWKMNgt~aei~eLl~~L~~~~~~-~~VdVvVaPP~t-v---~~~l~-~~I~-GAQNV~~~~---~g~~~~ 120 (146)
.||+++|+||||||++.+++.+|++.+...... .++++++||||+ + .+.++ ..|. |||||++++ .|||||
T Consensus 2 ~~~k~~i~~NwKmn~~~~~~~~~~~~~~~~~~~~~~v~v~i~P~~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGevS 81 (255)
T PTZ00333 2 MKRKPFVGGNWKCNGTKASIKELIDSFNKLKFDPNNVDVVVAPPSLHIPLVQEKLKNKNFKISSQNVSLTGSGAFTGEIS 81 (255)
T ss_pred CCCCeEEEEEcccccCHHHHHHHHHHHHhhccccCCeeEEEECCHHHHHHHHHHhcCCCeeEEccccccccCCCccCcCC
Confidence 468899999999999999999999998754333 468999999997 3 33444 4788 999999986 689999
Q ss_pred hhhhcCC--cEEEEEcccc
Q 032180 121 SILEKDL--VWAILVVNSH 137 (146)
Q Consensus 121 ~~~~~~~--~~~~~~~~~~ 137 (146)
++||||+ .+|||||--+
T Consensus 82 ~~mL~d~G~~~viiGHSER 100 (255)
T PTZ00333 82 AEMLKDLGINWTILGHSER 100 (255)
T ss_pred HHHHHHcCCCEEEECcccc
Confidence 9999999 9999999643
No 9
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=99.84 E-value=3.5e-21 Score=158.73 Aligned_cols=82 Identities=26% Similarity=0.310 Sum_probs=69.0
Q ss_pred ceeEeeecccCCHHHHHHHHHHHhhcccC-CCccEEEechHH----HHHHhc-CCee-eecccCccC---Cccccchhhh
Q 032180 55 FFVGGNWKCNGTKESITKLVSDLNDAKLE-ADVGEMMLLLSS----LDAYLV-IRFH-CEHYVWVYL---LVADVCSILE 124 (146)
Q Consensus 55 ~lViGNWKMNgt~aei~eLl~~L~~~~~~-~~VdVvVaPP~t----v~~~l~-~~I~-GAQNV~~~~---~g~~~~~~~~ 124 (146)
|||+||||||++.+++.+|++++.+...+ .+++++|||||+ +.+.++ +.+. ||||||+++ .|||||+.||
T Consensus 1 kii~~NwKmn~~~~~~~~~~~~l~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~i~igAQnv~~~~~Ga~TGevS~~mL 80 (244)
T PF00121_consen 1 KIIIGNWKMNGTGEEALEFLKELLNAKLPNKDVEVVIAPPFTYLSSVSKILKGSNIKIGAQNVSPEDSGAFTGEVSAEML 80 (244)
T ss_dssp SEEEEEETBSGSHHHHHHHHHHHHHHHCHTTTEEEEEEESGGGHHHHHHHHTTTTSEEEESS-BSSSSBS-TTHHBHHHH
T ss_pred CEEEEehhhCcCHHHHHHHHHHHHhcccccCCeeEEEEecchhHHHHHhhccCCeEEEecccccchhhcccHHHhHHHHH
Confidence 68999999999999999999997765444 489999999997 344443 5889 999999986 5999999999
Q ss_pred cCC--cEEEEEccc
Q 032180 125 KDL--VWAILVVNS 136 (146)
Q Consensus 125 ~~~--~~~~~~~~~ 136 (146)
||+ .||||||--
T Consensus 81 ~d~G~~~viiGHSE 94 (244)
T PF00121_consen 81 KDLGCKYVIIGHSE 94 (244)
T ss_dssp HHTTESEEEESCHH
T ss_pred HHhhCCEEEecccc
Confidence 999 999999953
No 10
>PRK14565 triosephosphate isomerase; Provisional
Probab=99.84 E-value=5.9e-21 Score=157.35 Aligned_cols=84 Identities=13% Similarity=0.260 Sum_probs=70.2
Q ss_pred CceeEeeecccCCHHHHHHHHHHHhhccc--CCCccEEEechHH-HHHHhc--CCee-eecccCccC---Cccccchhhh
Q 032180 54 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EADVGEMMLLLSS-LDAYLV--IRFH-CEHYVWVYL---LVADVCSILE 124 (146)
Q Consensus 54 k~lViGNWKMNgt~aei~eLl~~L~~~~~--~~~VdVvVaPP~t-v~~~l~--~~I~-GAQNV~~~~---~g~~~~~~~~ 124 (146)
|++|+||||||++.+++.+|++++..... ..++++++||||+ +....+ ..|. |||||++++ .|||||++||
T Consensus 2 ~~~v~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~v~v~iaP~~~~l~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS~~mL 81 (237)
T PRK14565 2 SFLIVANWKMNGDFSLFSSFLKELSNKLANNEITLKLVICPPFTAMSSFVECNPNIKLGAQNCFYGSSGGYTGEISAKML 81 (237)
T ss_pred CcEEEEECccccCHHHHHHHHHHHHhhccccCCCceEEEECCHHHHHHHHHhcCCceEEecccccccCCCccCccCHHHH
Confidence 68999999999999999999999976432 2469999999997 333221 4788 999999976 5999999999
Q ss_pred cCC--cEEEEEcccc
Q 032180 125 KDL--VWAILVVNSH 137 (146)
Q Consensus 125 ~~~--~~~~~~~~~~ 137 (146)
||+ .||||||--+
T Consensus 82 kd~G~~~viiGHSER 96 (237)
T PRK14565 82 KECGCSYVILGHSER 96 (237)
T ss_pred HHcCCCEEEECcccc
Confidence 999 9999999643
No 11
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=99.83 E-value=9.1e-21 Score=156.23 Aligned_cols=84 Identities=23% Similarity=0.238 Sum_probs=70.5
Q ss_pred ceeEeeecccCCHHHHHHHHHHHhhccc-CCCccEEEechHH-H---HHHhc-CCee-eecccCccC---Cccccchhhh
Q 032180 55 FFVGGNWKCNGTKESITKLVSDLNDAKL-EADVGEMMLLLSS-L---DAYLV-IRFH-CEHYVWVYL---LVADVCSILE 124 (146)
Q Consensus 55 ~lViGNWKMNgt~aei~eLl~~L~~~~~-~~~VdVvVaPP~t-v---~~~l~-~~I~-GAQNV~~~~---~g~~~~~~~~ 124 (146)
++|+||||||++.+++.+|++.+..... ..+++++|||||+ + .+.++ +.|. ||||||+++ .|||||++||
T Consensus 1 ~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS~~mL 80 (242)
T cd00311 1 PLVAGNWKMNGTLAEALELAKALNAVLKDESGVEVVVAPPFTYLAAVAEALEGSKIKVGAQNVSPEDSGAFTGEISAEML 80 (242)
T ss_pred CEEEEECCcccCHHHHHHHHHHHHhhccccCCceEEEECCHHHHHHHHHHccCCCeEEEecccccccCCCCcCcCCHHHH
Confidence 5899999999999999999999876543 3569999999997 3 33444 3788 999999987 4999999999
Q ss_pred cCC--cEEEEEcccce
Q 032180 125 KDL--VWAILVVNSHF 138 (146)
Q Consensus 125 ~~~--~~~~~~~~~~~ 138 (146)
||+ .||||||--+=
T Consensus 81 ~d~G~~~viiGHSERR 96 (242)
T cd00311 81 KDAGAKYVIIGHSERR 96 (242)
T ss_pred HHcCCCEEEeCccccc
Confidence 999 99999996543
No 12
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=99.83 E-value=9.4e-21 Score=163.68 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=69.7
Q ss_pred CCceeEeeecccCCHHHHHHHHHHHhhccc----CCCccEEEechHH-H---HHHhc-----CCee-eecccCccC---C
Q 032180 53 NKFFVGGNWKCNGTKESITKLVSDLNDAKL----EADVGEMMLLLSS-L---DAYLV-----IRFH-CEHYVWVYL---L 115 (146)
Q Consensus 53 rk~lViGNWKMNgt~aei~eLl~~L~~~~~----~~~VdVvVaPP~t-v---~~~l~-----~~I~-GAQNV~~~~---~ 115 (146)
|++||+||||||++.+++.+|+++|..... ..++++++||||+ + .+.+. ++|. ||||||+++ .
T Consensus 3 r~~~v~gNWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~~~~~i~vgAQnv~~~~~Ga~ 82 (355)
T PRK14905 3 KKIYFGTNLKMYKGNAETVDYLSELLAFAEKFKSDYDIELFVIPSYIALKDAVEAAASETGHPKIKIGAQNMNAKDKGQF 82 (355)
T ss_pred CceEEEEECCcCCCHHHHHHHHHHHHHhhhhccccCCceEEEECCHHHHHHHHHHhhcccCCCceEEEeccCCCCCCCCc
Confidence 678999999999999999999999854321 2458999999997 3 33332 3688 999999976 5
Q ss_pred ccccchhhhcCC--cEEEEEccc
Q 032180 116 VADVCSILEKDL--VWAILVVNS 136 (146)
Q Consensus 116 g~~~~~~~~~~~--~~~~~~~~~ 136 (146)
|||||++||||+ .||||||--
T Consensus 83 TGEVS~~mL~d~G~~~viiGHSE 105 (355)
T PRK14905 83 TGEISPLMLKELGIELVMIGHSE 105 (355)
T ss_pred cCcCCHHHHHHcCCCEEEECccc
Confidence 999999999999 999999954
No 13
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.7e-20 Score=155.95 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=71.1
Q ss_pred cCCceeEeeecccCCHHHHHHHHHHHhhcccCC--CccEEEechHH----HHHHhc-CCee-eecccCccC---Cccccc
Q 032180 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEA--DVGEMMLLLSS----LDAYLV-IRFH-CEHYVWVYL---LVADVC 120 (146)
Q Consensus 52 ~rk~lViGNWKMNgt~aei~eLl~~L~~~~~~~--~VdVvVaPP~t----v~~~l~-~~I~-GAQNV~~~~---~g~~~~ 120 (146)
||++||+||||||++..+..+|++.+....... +++++||||++ +.+.++ +.|. ||||||+++ .|||||
T Consensus 1 ~~~~~v~gNwKmn~t~~~~~~~~~~~~~~~~~~~~~~~v~I~pp~~~L~~~~~~~~~g~i~~gAQn~~~~~~GA~TGeiS 80 (251)
T COG0149 1 MRKPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIGNIKVGAQNVDPEDSGAFTGEIS 80 (251)
T ss_pred CCCcEEEEEcccCcChHHHHHHHHHHhhcccccccceeEEEeCCHHHHHHHHHHhccCCceEEeccCCcccCCCccCcCC
Confidence 578899999999999999999999988765432 24489999997 344444 3788 999999987 499999
Q ss_pred hhhhcCC--cEEEEEccc
Q 032180 121 SILEKDL--VWAILVVNS 136 (146)
Q Consensus 121 ~~~~~~~--~~~~~~~~~ 136 (146)
++||||+ ++|||||--
T Consensus 81 ~~mL~d~G~~~viiGHSE 98 (251)
T COG0149 81 AEMLKDLGAKYVLIGHSE 98 (251)
T ss_pred HHHHHHcCCCEEEECccc
Confidence 9999999 999999964
No 14
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=99.81 E-value=3.8e-20 Score=169.94 Aligned_cols=86 Identities=14% Similarity=0.221 Sum_probs=72.2
Q ss_pred cCCceeEeeecccCCHHHHHHHHHHHhhcccCCCccEEEechHH----HHHHhc-CCee-eecccCccC---Cccccchh
Q 032180 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSS----LDAYLV-IRFH-CEHYVWVYL---LVADVCSI 122 (146)
Q Consensus 52 ~rk~lViGNWKMNgt~aei~eLl~~L~~~~~~~~VdVvVaPP~t----v~~~l~-~~I~-GAQNV~~~~---~g~~~~~~ 122 (146)
||+++|+||||||++.+++.+|++.+.......+++|+|||||+ +.+.++ +.|. ||||||+++ .|||||++
T Consensus 396 Mrk~~i~gNWKMn~~~~~~~~~~~~l~~~~~~~~~~v~v~Pp~~~L~~~~~~l~~~~i~vgAQnv~~~~~GA~TGEVSa~ 475 (645)
T PRK13962 396 PRKPIIAGNWKMNKTPAEAKEFVNELKKYVKDAQAEVVVCPPFTALPSVKEAVDGSNIKLGAQNVFYEEKGAYTGEISGP 475 (645)
T ss_pred CCCcEEEEECCcCcCHHHHHHHHHHHHhhccCCCCeEEEECCHHHHHHHHHHhcCCCeEEEcccccccccCCccCcCCHH
Confidence 78899999999999999999999988654333346999999997 334444 4789 999999986 59999999
Q ss_pred hhcCC--cEEEEEcccc
Q 032180 123 LEKDL--VWAILVVNSH 137 (146)
Q Consensus 123 ~~~~~--~~~~~~~~~~ 137 (146)
||||+ .||||||--+
T Consensus 476 mLkd~G~~~viiGHSER 492 (645)
T PRK13962 476 MLAEIGVEYVIIGHSER 492 (645)
T ss_pred HHHHcCCCEEEECcccc
Confidence 99999 9999999643
No 15
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=99.80 E-value=6.9e-20 Score=148.06 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=66.8
Q ss_pred eeEeeec-ccCCHHHHHHHHHHHhhcccC-CCccEEEechHH-HH---HHhcCCee-eecccCccC---Cccccchhhhc
Q 032180 56 FVGGNWK-CNGTKESITKLVSDLNDAKLE-ADVGEMMLLLSS-LD---AYLVIRFH-CEHYVWVYL---LVADVCSILEK 125 (146)
Q Consensus 56 lViGNWK-MNgt~aei~eLl~~L~~~~~~-~~VdVvVaPP~t-v~---~~l~~~I~-GAQNV~~~~---~g~~~~~~~~~ 125 (146)
||+|||| ||++..+..+|++.+...... .++++++||||+ +. +.+ .|. |||||++++ .|||||++|||
T Consensus 1 ~i~~NwK~mn~~~~~~~~~~~~~~~~~~~~~~~~v~v~Pp~~~L~~~~~~~--~i~vgAQn~~~~~~Ga~TGevS~~mLk 78 (205)
T TIGR00419 1 LVIGNWKTYNESRGMRALEVAKIAEEVASEAGVAVAVAPPFVDLPMIKREV--EIPVYAQHVDAVLSGAHTGEISAEMLK 78 (205)
T ss_pred CEEEEhhhcCCCHHHHHHHHHHHHhhccccCCcEEEEECCHHHHHHHHHhc--CceEEecccccccCCCccCcCCHHHHH
Confidence 6899999 999999999999888654322 468999999997 33 333 388 999999986 59999999999
Q ss_pred CC--cEEEEEcccc
Q 032180 126 DL--VWAILVVNSH 137 (146)
Q Consensus 126 ~~--~~~~~~~~~~ 137 (146)
|+ .||||||--+
T Consensus 79 d~G~~~viiGHSER 92 (205)
T TIGR00419 79 DIGAKGTLINHSER 92 (205)
T ss_pred HcCCCEEEECcccC
Confidence 99 9999999643
No 16
>PRK04302 triosephosphate isomerase; Provisional
Probab=99.64 E-value=4.4e-16 Score=125.30 Aligned_cols=84 Identities=11% Similarity=-0.019 Sum_probs=68.1
Q ss_pred cCCceeEeeecccC--CHHHHHHHHHHHhhcccCCCccEEEechHH-HHHHhc-CCee-eecccCccC---Cccccchhh
Q 032180 52 SNKFFVGGNWKCNG--TKESITKLVSDLNDAKLEADVGEMMLLLSS-LDAYLV-IRFH-CEHYVWVYL---LVADVCSIL 123 (146)
Q Consensus 52 ~rk~lViGNWKMNg--t~aei~eLl~~L~~~~~~~~VdVvVaPP~t-v~~~l~-~~I~-GAQNV~~~~---~g~~~~~~~ 123 (146)
||++||+||||||+ +.+++.+|++.+.......++++++|||++ +....+ ..+. +|||++... .+|+++.+|
T Consensus 1 m~~~~~~~n~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~ 80 (223)
T PRK04302 1 MKYPIILVNFKTYPEATGKDALEIAKAAEKVSKETGVRIAVAPQALDIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEA 80 (223)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHhccccCCCEEEEECCHHHHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHH
Confidence 47889999999999 699999999888663223458999999997 443322 2577 999999976 679999999
Q ss_pred hcCC--cEEEEEcc
Q 032180 124 EKDL--VWAILVVN 135 (146)
Q Consensus 124 ~~~~--~~~~~~~~ 135 (146)
+||+ .+||++|-
T Consensus 81 l~~~G~~~vii~~s 94 (223)
T PRK04302 81 VKDAGAVGTLINHS 94 (223)
T ss_pred HHHcCCCEEEEecc
Confidence 9998 99999985
No 17
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=36.89 E-value=43 Score=29.33 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=22.3
Q ss_pred CCceeEeeeccc-CCHHHHHHHH-HHHhhcccCCCccEEEec
Q 032180 53 NKFFVGGNWKCN-GTKESITKLV-SDLNDAKLEADVGEMMLL 92 (146)
Q Consensus 53 rk~lViGNWKMN-gt~aei~eLl-~~L~~~~~~~~VdVvVaP 92 (146)
++...+||||-. ...+++.++. +++.. ...+++|++..-
T Consensus 44 K~ya~a~~wkqt~~lp~~~~e~~V~ec~~-~~F~ecDIvfsg 84 (361)
T KOG4777|consen 44 KRYAFAGNWKQTDLLPESAHEYTVEECTA-DSFNECDIVFSG 84 (361)
T ss_pred CceEecccchhcccccchhhhhhHhhcCh-hhcccccEEEec
Confidence 456789999954 3445555553 33332 223568876654
No 18
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=31.37 E-value=35 Score=23.21 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=18.8
Q ss_pred ceeEeeeccc--CCHHHHHHHHHHHhhc
Q 032180 55 FFVGGNWKCN--GTKESITKLVSDLNDA 80 (146)
Q Consensus 55 ~lViGNWKMN--gt~aei~eLl~~L~~~ 80 (146)
.+-+|-|||| .++...++|-+.|.+.
T Consensus 28 L~AG~~WKmhHWn~qrkt~~fY~~Lekg 55 (63)
T PLN03155 28 LAAGGLWKMHHWNEQRKTRSFYDLLEKG 55 (63)
T ss_pred HhhhhHHHHhhhhhHHHHHHHHHHHhcC
Confidence 3457889999 5666778887776654
No 19
>PLN03070 photosystem I reaction center subunit psaK 247; Provisional
Probab=20.50 E-value=67 Score=24.73 Aligned_cols=19 Identities=58% Similarity=0.702 Sum_probs=15.2
Q ss_pred CCccccccccccCCcccCC
Q 032180 1 MASMVSTNCAQFSGLRRSS 19 (146)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (146)
|++-.+...|+|.|||...
T Consensus 1 ~~~~~~~~~p~F~glr~~~ 19 (128)
T PLN03070 1 MASTMMTTLPQFNGLRASS 19 (128)
T ss_pred Ccccccccccccccccccc
Confidence 5666677889999999965
Done!