RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 032180
(146 letters)
>gnl|CDD|166070 PLN02429, PLN02429, triosephosphate isomerase.
Length = 315
Score = 72.1 bits (176), Expect = 7e-16
Identities = 58/100 (58%), Positives = 61/100 (61%), Gaps = 17/100 (17%)
Query: 1 MASMVSTNCAQFSGLRRSSPT---------QSFSQHVNSHLRLFSS-----RRPRRGSSV 46
MA+ T FSGLRR SP QSF VNS RL SS R PR V
Sbjct: 1 MAATSLTAPPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPR---GV 57
Query: 47 VAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
VAMA S KFFVGGNWKCNGTK+SI KL+SDLN A LEADV
Sbjct: 58 VAMAGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADV 97
>gnl|CDD|240365 PTZ00333, PTZ00333, triosephosphate isomerase; Provisional.
Length = 255
Score = 54.5 bits (132), Expect = 1e-09
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 50 ASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSL 96
K FVGGNWKCNGTK SI +L+ N K + + ++++ SL
Sbjct: 1 MMKRKPFVGGNWKCNGTKASIKELIDSFNKLKFDPNNVDVVVAPPSL 47
>gnl|CDD|178175 PLN02561, PLN02561, triosephosphate isomerase.
Length = 253
Score = 53.7 bits (129), Expect = 2e-09
Identities = 22/41 (53%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKL-EADVGEMML 91
+ KFFVGGNWKCNGT E + K+V+ LN+A++ DV E+++
Sbjct: 2 ARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSEDVVEVVV 42
>gnl|CDD|238190 cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually homodimeric, but in some organisms
tetrameric, is ubiqitous and conserved in function
across eukaryotes, bacteria and archaea.
Length = 242
Score = 47.5 bits (114), Expect = 3e-07
Identities = 14/59 (23%), Positives = 20/59 (33%)
Query: 55 FFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSLDAYLVIRFHCEHYVWVY 113
V GNWK NGT +L LN + E+++ V + V
Sbjct: 1 PLVAGNWKMNGTLAEALELAKALNAVLKDESGVEVVVAPPFTYLAAVAEALEGSKIKVG 59
>gnl|CDD|215732 pfam00121, TIM, Triosephosphate isomerase.
Length = 242
Score = 43.0 bits (102), Expect = 1e-05
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 55 FFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSLD 97
+ GNWK N T +L L A L+ D E+++
Sbjct: 1 PIIIGNWKMNKTLAEALELAKALLAAALKNDGVEVVVAPPFTY 43
>gnl|CDD|234589 PRK00042, tpiA, triosephosphate isomerase; Provisional.
Length = 250
Score = 36.3 bits (85), Expect = 0.003
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDA 80
K + GNWK N T LV +L A
Sbjct: 2 KPIIAGNWKMNKTLAEAKALVEELKAA 28
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 34.3 bits (79), Expect = 0.013
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 54 KFFVGGNWKCNGT----KESITKLVSDLNDAKLEADVGEMMLLLSS 95
K + GNWK N T KE + +L + DA+ E V L S
Sbjct: 398 KPIIAGNWKMNKTPAEAKEFVNELKKYVKDAQAEVVVCPPFTALPS 443
>gnl|CDD|223227 COG0149, TpiA, Triosephosphate isomerase [Carbohydrate transport
and metabolism].
Length = 251
Score = 31.4 bits (72), Expect = 0.11
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAK-LEADVGEMMLLLSSLDAYLV 101
K V GNWK N T LV L + D E+ + D V
Sbjct: 3 KPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRV 51
>gnl|CDD|219213 pfam06878, Pkip-1, Pkip-1 protein. This family consists of several
Pkip-1 proteins which seem to be specific to
Nucleopolyhedroviruses. The function of this family is
unknown although it has been found that Pkip-1 is not
essential for virus replication in cell culture or by in
vivo intrahaemocoelic injection.
Length = 163
Score = 28.4 bits (64), Expect = 1.1
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 64 NGTKESITKLVSDLNDAKLEADVGEMMLLLSSLDAYLVIRFH 105
N + + ++DL+D ++ + E + + LD YL+ +++
Sbjct: 59 NASDKEKLDFINDLSDLDIDNEEIESLCETADLDEYLLKKYN 100
>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a
glycogen binding domain, associated with the catalytic
domain of AMP-activated protein kinase beta subunit. E
or "early" set domains are associated with the
catalytic domain of AMP-activated protein kinase beta
subunit glycogen binding domain at the N-terminal end.
AMPK is a metabolic stress sensing protein that senses
AMP/ATP and has recently been found to act as a
glycogen sensor as well. The protein functions as an
alpha-beta-gamma heterotrimer. This N-terminal domain
is the glycogen binding domain of the beta subunit.
This domain is also a member of the CBM48 (Carbohydrate
Binding Module 48) family whose members include
pullulanase, maltooligosyl trehalose synthase, starch
branching enzyme, glycogen branching enzyme, glycogen
debranching enzyme, and isoamylase.
Length = 80
Score = 27.2 bits (61), Expect = 1.2
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 54 KFFVGGNWKCNGTKESIT 71
KF V G W + ++T
Sbjct: 51 KFIVDGEWVHDPDLPTVT 68
>gnl|CDD|173031 PRK14567, PRK14567, triosephosphate isomerase; Provisional.
Length = 253
Score = 27.3 bits (60), Expect = 3.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 59 GNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSL 96
GNWK NG SI +L S ++ + + + + SS+
Sbjct: 7 GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSV 44
>gnl|CDD|171438 PRK12363, PRK12363, phosphoglycerol transferase I; Provisional.
Length = 703
Score = 27.2 bits (60), Expect = 4.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 21 TQSFSQHVNSH--LRLFSSRRPRRGSSVVAMASSNKFFVGGNW 61
TQ+ + + L L++SRRP R V A++S K + W
Sbjct: 610 TQAARKTLAGRYMLELYASRRPTRAFWVEAVSSERKVVLAQQW 652
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to
fadE5. Putative acyl-CoA dehydrogenase (ACAD).
Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze
the alpha,beta dehydrogenation of the corresponding
trans-enoyl-CoA by FAD, which becomes reduced. The
reduced form of ACAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. The ACD family includes the eukaryotic
beta-oxidation, as well as amino acid catabolism
enzymes. These enzymes share high sequence similarity,
but differ in their substrate specificities. The
mitochondrial ACD's are generally homotetramers and have
an active site glutamate at a conserved position.
Length = 407
Score = 27.0 bits (60), Expect = 4.6
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 40 PRRGSSVVAMASSNKFFVGGNWKCNGTKESITKLVSDLND 79
P GS + A+ + + G+W+ NG K I+ D+++
Sbjct: 126 PDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSE 165
>gnl|CDD|178619 PLN03070, PLN03070, photosystem I reaction center subunit psaK
247; Provisional.
Length = 128
Score = 26.1 bits (57), Expect = 4.9
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 1 MASMVSTNCAQFSGLRRSSPTQSFSQHVNSHLRLFSSRRPRRGS 44
MAS + T QF+GLR SS + V S + + RR +G+
Sbjct: 1 MASTMMTTLPQFNGLRASS-----AAPVKSLVAVQPMRRKGKGA 39
>gnl|CDD|132411 TIGR03368, cellulose_yhjU, cellulose synthase operon protein YhjU.
This protein was identified by the partial phylogenetic
profiling algorithm (PMID:16930487) as part of the
system for cellulose biosynthesis in bacteria, and in
fact is found in cellulose biosynthesis gene regions.
The protein was designated YhjU in Salmonella
enteritidis, where disruption of its gene disrupts
cellulose biosynthesis and biofilm formation
(PMID:11929533) [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 518
Score = 26.5 bits (59), Expect = 6.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 11 QFSGLRRSSPTQSFSQHVNSHLRLFSSRRPRRGSSVVAMASSNKF 55
Q SGLR P+ S + HV ++ F PRRG++V A S+
Sbjct: 414 QISGLR-EIPSPSIT-HVPVGVKFFGLGAPRRGATVTITAPSSYL 456
>gnl|CDD|225525 COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter
[Coenzyme metabolism].
Length = 516
Score = 26.1 bits (58), Expect = 8.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 81 KLEADVGEMML-LLSSLDAYLVIRFHCEHYV 110
K + DV MM +SS+ Y+VI F +V
Sbjct: 334 KNDKDVVNMMAESMSSMGGYIVIAFFAAQFV 364
>gnl|CDD|217741 pfam03806, ABG_transport, AbgT putative transporter family.
Length = 502
Score = 26.2 bits (58), Expect = 9.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 81 KLEADVGEMML-LLSSLDAYLVIRFHCEHYV 110
K DV MM +SS+ Y+VI F +V
Sbjct: 322 KNSKDVVNMMADSMSSMGTYIVIAFFAAQFV 352
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.131 0.393
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,912,815
Number of extensions: 579946
Number of successful extensions: 415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 25
Length of query: 146
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 58
Effective length of database: 7,034,450
Effective search space: 407998100
Effective search space used: 407998100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.6 bits)