RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 032180
(146 letters)
>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 247
Score = 51.8 bits (123), Expect = 3e-09
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ FFVGGN+K NG+K+SI ++V LN A + +V
Sbjct: 1 ARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENV 35
>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 246
Score = 50.6 bits (120), Expect = 6e-09
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
S KFFVGGNWK NG K+++ +L++ LN AK+ AD
Sbjct: 1 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADT 35
>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 257
Score = 48.7 bits (115), Expect = 3e-08
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSLDAYLVIRFHCEHYVW 111
+ KFFVGGNWK NG S+ +V+ LN + + V ++++ + +
Sbjct: 10 TRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSV-DVVVAPPAPYLAYAKSKLKAGVLV 68
Query: 112 V 112
Sbjct: 69 A 69
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 246
Score = 48.3 bits (114), Expect = 4e-08
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSLDAYLVIRFHCEHYVW 111
K+FV NWKCNGT ESI L + N+ + ++++ S+ + +
Sbjct: 2 KYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFST 59
>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima
[TaxId: 2336]}
Length = 252
Score = 47.1 bits (111), Expect = 9e-08
Identities = 12/70 (17%), Positives = 22/70 (31%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSLDAYLVIRFHCEHYVW 111
+ K + GNWK + T K VS L + + E+++ V +
Sbjct: 1 TRKLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIK 60
Query: 112 VYLLVADVCS 121
+
Sbjct: 61 LGAQNVFYED 70
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli
[TaxId: 562]}
Length = 255
Score = 46.4 bits (109), Expect = 2e-07
Identities = 12/59 (20%), Positives = 24/59 (40%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSLDAYLVIRFHCEHYVWV 112
V GNWK NG++ + +LVS+L + + + + R ++ +
Sbjct: 3 HPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIML 61
>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma
brucei [TaxId: 5691]}
Length = 249
Score = 45.3 bits (106), Expect = 5e-07
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
+ NWKCNG+++S+++L+ N + DV
Sbjct: 4 QPIAAANWKCNGSQQSLSELIDLFNSTSINHDV 36
>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania
mexicana [TaxId: 5665]}
Length = 249
Score = 44.8 bits (105), Expect = 6e-07
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 56 FVGGNWKCNGTKESITKLVSDLNDAKLEADV 86
NWKCNGT SI KLV N+ + DV
Sbjct: 6 IAAANWKCNGTTASIEKLVQVFNEHTISHDV 36
>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 251
Score = 44.9 bits (105), Expect = 6e-07
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLEAD 85
K + GNWK NGT + V D+ AD
Sbjct: 2 KPIIAGNWKMNGTLAEAVQFVEDVKGHVPPAD 33
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba
histolytica [TaxId: 5759]}
Length = 260
Score = 44.9 bits (105), Expect = 6e-07
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAK 81
+ KF VGGNWKCNGT SI L + +
Sbjct: 2 AGKFVVGGNWKCNGTLASIETLTKGVAASV 31
>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus
[TaxId: 90736]}
Length = 255
Score = 44.1 bits (103), Expect = 1e-06
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLEADVGEMMLLLSSLDAYLVIRFHCEHYVWVY 113
V GNWK NG+KE + L++ LN ++ + +L L R E +
Sbjct: 2 HPVVMGNWKLNGSKEMVVDLLNGLNAELEGVTGVDVAVAPPALFVDLAERTLTEAGSAII 61
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon
Pyrococcus woesei [TaxId: 2262]}
Length = 224
Score = 33.1 bits (74), Expect = 0.008
Identities = 4/35 (11%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 54 KFFVGGNWKCNGTK--ESITKLVSDLNDAKLEADV 86
+ + N+K + ++ E V
Sbjct: 5 EPIIAINFKTYIEATGKRALEIAKAAEKVYKETGV 39
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus
tenax [TaxId: 2271]}
Length = 226
Score = 29.9 bits (66), Expect = 0.079
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 54 KFFVGGNWKCNGTK--ESITKLVSDLNDAKLEADV 86
+ N+K G + +L A E V
Sbjct: 3 LPILIINFKAYGEAAGKRAVELAKAAERAARELGV 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.131 0.393
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 489,066
Number of extensions: 18474
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 13
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.3 bits)