Query 032181
Match_columns 146
No_of_seqs 151 out of 376
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 17:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_B Histone H2B; histone-fo 100.0 7.3E-55 2.5E-59 331.7 8.8 98 49-146 28-125 (126)
2 2nqb_D Histone H2B; nucleosome 100.0 1.2E-54 4.2E-59 329.3 9.1 98 49-146 25-122 (123)
3 2jss_A Chimera of histone H2B. 100.0 2E-39 6.8E-44 258.6 9.2 91 55-145 1-91 (192)
4 3b0c_W CENP-W, centromere prot 99.7 7E-17 2.4E-21 111.5 6.9 65 60-124 7-71 (76)
5 1b67_A Protein (histone HMFA); 99.1 1.6E-10 5.6E-15 77.2 6.7 61 62-123 7-67 (68)
6 1f1e_A Histone fold protein; a 98.9 3.7E-09 1.3E-13 82.3 7.0 63 62-125 87-149 (154)
7 2yfw_B Histone H4, H4; cell cy 98.4 6.5E-07 2.2E-11 64.8 7.0 62 61-123 33-94 (103)
8 1tzy_D Histone H4-VI; histone- 98.4 7.4E-07 2.5E-11 64.4 6.9 63 60-123 32-94 (103)
9 1ku5_A HPHA, archaeal histon; 98.3 1.2E-06 4.2E-11 58.8 6.7 59 62-121 11-69 (70)
10 1id3_B Histone H4; nucleosome 98.2 4.5E-06 1.5E-10 60.5 6.9 63 60-123 31-93 (102)
11 1n1j_A NF-YB; histone-like PAI 98.2 8.2E-06 2.8E-10 57.4 8.1 60 62-121 13-73 (93)
12 2hue_C Histone H4; mini beta s 98.1 6.2E-06 2.1E-10 57.5 5.7 62 61-123 14-75 (84)
13 1jfi_B DR1 protein, transcript 98.0 1.8E-05 6.2E-10 62.9 8.5 63 61-123 19-81 (179)
14 3b0c_T CENP-T, centromere prot 98.0 1.3E-05 4.5E-10 58.9 7.1 61 61-122 11-71 (111)
15 2byk_B Chrac-14; nucleosome sl 98.0 2.7E-05 9.3E-10 58.4 8.0 62 62-123 14-76 (128)
16 2nqb_C Histone H2A; nucleosome 97.9 3E-05 1E-09 58.0 7.4 64 58-121 23-87 (123)
17 2f8n_G Core histone macro-H2A. 97.9 3.3E-05 1.1E-09 57.6 7.3 64 58-121 22-86 (120)
18 1f1e_A Histone fold protein; a 97.9 3.6E-05 1.2E-09 59.8 7.5 61 62-122 9-69 (154)
19 1tzy_A Histone H2A-IV; histone 97.9 3.8E-05 1.3E-09 57.9 7.3 64 58-121 25-89 (129)
20 1id3_C Histone H2A.1; nucleoso 97.9 3.4E-05 1.2E-09 58.3 6.8 64 58-121 25-89 (131)
21 1taf_B TFIID TBP associated fa 97.8 7E-05 2.4E-09 51.4 7.5 60 62-122 11-70 (70)
22 2f8n_K Histone H2A type 1; nuc 97.8 5.2E-05 1.8E-09 58.7 7.1 64 58-121 44-108 (149)
23 1n1j_B NF-YC; histone-like PAI 97.8 8E-05 2.8E-09 53.0 7.0 60 62-122 24-84 (97)
24 1f66_C Histone H2A.Z; nucleoso 97.7 8.7E-05 3E-09 55.9 6.8 65 57-121 26-92 (128)
25 4g92_C HAPE; transcription fac 97.7 9.3E-05 3.2E-09 54.7 6.6 60 62-121 46-105 (119)
26 1h3o_B Transcription initiatio 97.6 0.00037 1.3E-08 48.5 8.1 61 62-122 10-70 (76)
27 2hue_B Histone H3; mini beta s 97.6 0.00036 1.2E-08 48.7 8.1 66 57-122 7-72 (77)
28 1taf_A TFIID TBP associated fa 97.6 0.00051 1.7E-08 46.8 8.4 63 61-124 5-67 (68)
29 1jfi_A Transcription regulator 97.5 0.00011 3.7E-09 52.6 4.7 60 61-121 15-75 (98)
30 4dra_A Centromere protein S; D 97.4 0.00021 7.1E-09 53.3 5.7 61 62-122 32-94 (113)
31 2jss_A Chimera of histone H2B. 97.4 0.00036 1.2E-08 55.2 7.3 72 57-130 104-177 (192)
32 3v9r_A MHF1, uncharacterized p 97.3 0.00059 2E-08 48.8 6.9 60 63-122 18-79 (90)
33 3b0b_B CENP-S, centromere prot 97.3 0.00027 9.3E-09 52.0 5.2 61 62-122 24-86 (107)
34 3nqj_A Histone H3-like centrom 97.3 0.0015 5.1E-08 46.0 8.3 67 57-123 7-75 (82)
35 1tzy_C Histone H3; histone-fol 97.3 0.0011 3.8E-08 50.6 8.1 65 58-122 67-131 (136)
36 2yfv_A Histone H3-like centrom 97.2 0.0013 4.6E-08 47.7 7.5 66 57-122 31-99 (100)
37 3ksy_A SOS-1, SON of sevenless 97.2 0.0015 5.3E-08 62.0 9.5 75 56-140 20-94 (1049)
38 3vh5_A CENP-S; histone fold, c 97.1 0.00083 2.8E-08 51.7 5.6 60 63-122 25-86 (140)
39 3nqu_A Histone H3-like centrom 97.0 0.0017 5.9E-08 49.9 7.1 65 59-123 67-133 (140)
40 2ly8_A Budding yeast chaperone 97.0 0.0014 4.9E-08 49.2 6.1 49 74-122 63-111 (121)
41 3r45_A Histone H3-like centrom 96.9 0.0037 1.3E-07 48.9 7.7 61 63-123 83-149 (156)
42 2byk_A Chrac-16; nucleosome sl 96.9 0.0022 7.7E-08 48.8 6.3 59 62-121 24-84 (140)
43 2l5a_A Histone H3-like centrom 96.3 0.0091 3.1E-07 49.3 7.0 50 74-123 177-226 (235)
44 2l5a_A Histone H3-like centrom 90.6 0.77 2.6E-05 37.8 7.2 68 55-122 13-83 (235)
45 1bh9_B TAFII28; histone fold, 88.8 2.8 9.7E-05 29.4 8.1 62 62-124 21-83 (89)
46 3b0b_C CENP-X, centromere prot 88.6 2 6.7E-05 29.8 7.1 56 62-121 13-74 (81)
47 4dra_E Centromere protein X; D 88.3 2.6 9E-05 29.5 7.6 62 61-122 16-79 (84)
48 3ksy_A SOS-1, SON of sevenless 86.8 1.8 6.1E-05 41.2 7.9 65 57-122 103-168 (1049)
49 3aji_B S6C, proteasome (prosom 74.5 5.3 0.00018 26.0 4.6 36 91-126 39-74 (83)
50 3vlf_B 26S protease regulatory 73.9 4.8 0.00016 26.9 4.4 38 92-129 40-77 (88)
51 2dzn_B 26S protease regulatory 71.6 5.1 0.00017 26.2 4.0 35 93-127 38-72 (82)
52 1g8p_A Magnesium-chelatase 38 71.1 13 0.00043 29.0 6.8 58 71-128 263-327 (350)
53 3f9v_A Minichromosome maintena 69.6 4.9 0.00017 35.7 4.6 65 58-124 506-588 (595)
54 2krk_A 26S protease regulatory 69.2 4.7 0.00016 27.1 3.5 35 92-126 50-84 (86)
55 3kw6_A 26S protease regulatory 63.7 7.9 0.00027 24.9 3.6 35 92-126 42-76 (78)
56 3uk6_A RUVB-like 2; hexameric 60.7 58 0.002 25.4 9.9 75 59-135 264-342 (368)
57 3k1j_A LON protease, ATP-depen 56.5 63 0.0021 28.2 9.2 64 59-122 295-374 (604)
58 2i5u_A DNAD domain protein; st 55.3 40 0.0014 22.3 6.1 49 61-110 2-59 (83)
59 2qby_A CDC6 homolog 1, cell di 54.4 72 0.0024 24.5 9.3 68 59-126 202-275 (386)
60 2v1u_A Cell division control p 54.1 73 0.0025 24.6 8.5 69 57-125 204-278 (387)
61 2r44_A Uncharacterized protein 51.5 38 0.0013 26.4 6.3 35 94-128 268-302 (331)
62 3v9r_B MHF2, uncharacterized p 50.7 27 0.00092 24.7 4.8 64 63-126 7-79 (88)
63 1lv7_A FTSH; alpha/beta domain 48.2 24 0.00083 26.5 4.6 35 92-126 221-255 (257)
64 3h4m_A Proteasome-activating n 46.1 49 0.0017 25.0 6.0 36 91-126 226-261 (285)
65 1jr3_D DNA polymerase III, del 39.2 40 0.0014 26.6 4.7 66 57-124 145-210 (343)
66 2dhr_A FTSH; AAA+ protein, hex 38.6 54 0.0018 28.7 5.8 51 92-142 240-301 (499)
67 4b4t_J 26S protease regulatory 35.5 34 0.0012 29.5 4.0 37 91-127 357-393 (405)
68 1u5t_A Appears to BE functiona 35.3 88 0.003 25.2 6.2 69 55-125 56-143 (233)
69 3iz6_S 40S ribosomal protein S 34.1 53 0.0018 25.0 4.5 39 58-96 98-146 (146)
70 2qby_B CDC6 homolog 3, cell di 33.8 1.6E+02 0.0056 22.7 7.6 66 58-125 201-272 (384)
71 3ctv_A HBD-10, 3-hydroxyacyl-C 33.2 60 0.002 22.1 4.3 36 86-124 18-53 (110)
72 2dn9_A DNAJ homolog subfamily 32.2 57 0.0019 20.7 3.8 39 60-99 25-64 (79)
73 4b4t_I 26S protease regulatory 32.1 40 0.0014 29.6 3.9 41 87-127 387-427 (437)
74 3sjr_A Uncharacterized protein 31.8 35 0.0012 26.8 3.1 47 53-103 94-143 (175)
75 4b4t_H 26S protease regulatory 30.0 40 0.0014 29.7 3.6 35 92-126 419-453 (467)
76 2chg_A Replication factor C sm 29.8 1.4E+02 0.0047 20.5 6.6 59 59-121 166-224 (226)
77 2iie_A Integration HOST factor 29.8 1E+02 0.0036 23.8 5.6 27 108-136 59-85 (204)
78 1njg_A DNA polymerase III subu 29.3 1E+02 0.0035 21.4 5.1 59 59-120 190-248 (250)
79 3f8t_A Predicted ATPase involv 29.1 2.1E+02 0.0071 25.7 8.1 27 98-124 458-484 (506)
80 3cuq_A Vacuolar-sorting protei 28.3 82 0.0028 25.4 4.9 68 56-125 37-129 (234)
81 1eg3_A Dystrophin; EF-hand lik 28.3 74 0.0025 25.8 4.7 23 106-128 144-166 (261)
82 2ctp_A DNAJ homolog subfamily 27.7 86 0.0029 19.8 4.1 20 61-80 26-45 (78)
83 2cug_A Mkiaa0962 protein; DNAJ 26.6 96 0.0033 20.3 4.3 20 60-79 35-54 (88)
84 2qz4_A Paraplegin; AAA+, SPG7, 25.4 22 0.00076 26.3 1.0 38 91-128 217-254 (262)
85 2ctr_A DNAJ homolog subfamily 24.8 1E+02 0.0034 20.2 4.1 20 61-80 26-45 (88)
86 3iz6_V 40S ribosomal protein S 24.0 2.1E+02 0.007 20.7 6.1 41 87-135 43-83 (108)
87 3g21_A GAG polyprotein, capsid 23.7 1.8E+02 0.0062 19.9 6.0 21 55-75 11-31 (77)
88 4b4t_M 26S protease regulatory 23.2 71 0.0024 27.6 3.9 40 87-126 386-425 (434)
89 2rp5_A Putative uncharacterize 22.9 6.1 0.00021 29.9 -2.5 33 89-122 102-134 (136)
90 2dmx_A DNAJ homolog subfamily 22.6 1.5E+02 0.0051 19.3 4.7 18 60-77 27-44 (92)
91 2guz_A Mitochondrial import in 21.2 1.1E+02 0.0036 19.4 3.6 19 61-79 34-52 (71)
92 4b4t_L 26S protease subunit RP 21.2 82 0.0028 27.2 3.9 36 91-126 390-425 (437)
93 2c9o_A RUVB-like 1; hexameric 21.2 3.5E+02 0.012 22.4 8.1 54 74-127 384-441 (456)
94 2hgc_A YJCQ protein; SR346, st 21.2 42 0.0014 24.0 1.7 39 60-98 4-43 (102)
95 2yua_A Williams-beuren syndrom 21.1 80 0.0027 21.2 3.1 18 60-77 35-52 (99)
96 3mn5_S Protein spire, actin, a 21.0 19 0.00065 21.7 -0.1 10 64-73 27-36 (38)
97 2ce7_A Cell division protein F 20.7 1.1E+02 0.0038 26.5 4.6 34 93-126 226-259 (476)
98 3bos_A Putative DNA replicatio 20.1 1.6E+02 0.0055 20.8 4.7 60 59-121 179-241 (242)
No 1
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=100.00 E-value=7.3e-55 Score=331.70 Aligned_cols=98 Identities=82% Similarity=1.141 Sum_probs=90.9
Q ss_pred cccccccchhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHH
Q 032181 49 KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGEL 128 (146)
Q Consensus 49 kk~~kkr~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGEL 128 (146)
+++++++.++|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|||+||||+||||||||||
T Consensus 28 ~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGEL 107 (126)
T 1tzy_B 28 KKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGEL 107 (126)
T ss_dssp ------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHH
T ss_pred CCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHHH
Confidence 45567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHhhhhhhhcccCC
Q 032181 129 AKHAVSEGTKAVTKFTSS 146 (146)
Q Consensus 129 aKhAvseGtkAV~ky~ss 146 (146)
+||||+|||+||++|+++
T Consensus 108 aKhAvseGtkAV~ky~ss 125 (126)
T 1tzy_B 108 AKHAVSEGTKAVTKYTSS 125 (126)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccCC
Confidence 999999999999999875
No 2
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=100.00 E-value=1.2e-54 Score=329.34 Aligned_cols=98 Identities=80% Similarity=1.115 Sum_probs=92.3
Q ss_pred cccccccchhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHH
Q 032181 49 KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGEL 128 (146)
Q Consensus 49 kk~~kkr~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGEL 128 (146)
+++++++.++|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|||+||||+||||||||||
T Consensus 25 ~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGEL 104 (123)
T 2nqb_D 25 KKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGEL 104 (123)
T ss_dssp ----CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHHH
T ss_pred CCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHHH
Confidence 44566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHhhhhhhhcccCC
Q 032181 129 AKHAVSEGTKAVTKFTSS 146 (146)
Q Consensus 129 aKhAvseGtkAV~ky~ss 146 (146)
+||||+|||+||++|+++
T Consensus 105 aKhAvseGtkAV~ky~ss 122 (123)
T 2nqb_D 105 AKHAVSEGTKAVTKYTSS 122 (123)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccCC
Confidence 999999999999999875
No 3
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=2e-39 Score=258.55 Aligned_cols=91 Identities=74% Similarity=1.088 Sum_probs=88.6
Q ss_pred cchhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHHHHhHHH
Q 032181 55 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVS 134 (146)
Q Consensus 55 r~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGELaKhAvs 134 (146)
++++|++||||||||||||++||++||++||+||+|||+||+.||++|++||+++|||+||||+||||+|||||+|||++
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~ 80 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVS 80 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccC
Q 032181 135 EGTKAVTKFTS 145 (146)
Q Consensus 135 eGtkAV~ky~s 145 (146)
||++||++|++
T Consensus 81 eG~kAv~k~~~ 91 (192)
T 2jss_A 81 EGTRAVTKYSS 91 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999999953
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.68 E-value=7e-17 Score=111.53 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=63.0
Q ss_pred HHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhC
Q 032181 60 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVL 124 (146)
Q Consensus 60 ~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLlL 124 (146)
..+|+|++||+|||.+||.+|+.+|+.+++++++.|+.||..++++++|+||+.+||+.|++.+|
T Consensus 7 ~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll 71 (76)
T 3b0c_W 7 RGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVIL 71 (76)
T ss_dssp HHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999887
No 5
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.11 E-value=1.6e-10 Score=77.21 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=58.4
Q ss_pred HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032181 62 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (146)
Q Consensus 62 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLl 123 (146)
=|.|++|++ ++..||+.|+..|...+.++++.|+.+|..++.+++|+||+.+|||.|++.|
T Consensus 7 ~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 7 PIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 378999999 8999999999999999999999999999999999999999999999999865
No 6
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.87 E-value=3.7e-09 Score=82.29 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=61.1
Q ss_pred HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCc
Q 032181 62 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLP 125 (146)
Q Consensus 62 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLlLP 125 (146)
=|.|++|+. ....||+.|...|..++.++.+.|+.+|..++++++|+|||.+||+.|++..||
T Consensus 87 ~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~ 149 (154)
T 1f1e_A 87 TVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMP 149 (154)
T ss_dssp HHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSG
T ss_pred HHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCC
Confidence 499999999 778999999999999999999999999999999999999999999999999999
No 7
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.41 E-value=6.5e-07 Score=64.78 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=58.5
Q ss_pred HHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032181 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (146)
Q Consensus 61 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLl 123 (146)
-.|.|+++..-. ..||..+..-|..++.++++.|+.+|..++++++|+|||.+||+.|++-+
T Consensus 33 ~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 33 PAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 469999999877 68999999999999999999999999999999999999999999999965
No 8
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.39 E-value=7.4e-07 Score=64.39 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=58.9
Q ss_pred HHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032181 60 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (146)
Q Consensus 60 ~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLl 123 (146)
.-.|.|+++..-. ..||..+..-|..++.++++.|+.+|..++++++|+|||.+||+.|++-+
T Consensus 32 ~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 32 KPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 3479999999876 68999999999999999999999999999999999999999999999965
No 9
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.35 E-value=1.2e-06 Score=58.84 Aligned_cols=59 Identities=15% Similarity=0.337 Sum_probs=55.5
Q ss_pred HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032181 62 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (146)
Q Consensus 62 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVr 121 (146)
-|.|++|+. ....||..+..-|..++.++++.|+.+|..++.+.+|+||+.+||+.|++
T Consensus 11 ~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 11 PVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 588999987 57899999999999999999999999999999999999999999999975
No 10
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.17 E-value=4.5e-06 Score=60.55 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=58.0
Q ss_pred HHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032181 60 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (146)
Q Consensus 60 ~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLl 123 (146)
.-.|.|+++..-. ..||..+...|..++.++++.|+.||..++++.+|+|||..||..|++.+
T Consensus 31 ~~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 31 KPAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3479999999754 78999999999999999999999999999999999999999999999865
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.17 E-value=8.2e-06 Score=57.44 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=56.8
Q ss_pred HHHHHhhhhcCC-CCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032181 62 YIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (146)
Q Consensus 62 YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVr 121 (146)
-|.|+.|+.-|| ..||.+|...|......+...|+.+|..++...+|+||+..||+.|++
T Consensus 13 ~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 13 NVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 489999999775 789999999999999999999999999999999999999999999998
No 12
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.07 E-value=6.2e-06 Score=57.53 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=57.0
Q ss_pred HHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032181 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (146)
Q Consensus 61 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLl 123 (146)
-.|.|+.+..-. ..||..+...|..++...++.|+.+|..++++.+|+|||..||..|++.+
T Consensus 14 ~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 14 PAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 468899998854 78999999999999999999999999999999999999999999998854
No 13
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.04 E-value=1.8e-05 Score=62.88 Aligned_cols=63 Identities=17% Similarity=0.334 Sum_probs=59.4
Q ss_pred HHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032181 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (146)
Q Consensus 61 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLl 123 (146)
.=|.|++|++-|+..||.+|...|...+..+..-|+.+|..++...+|+||+..||..|+.-+
T Consensus 19 A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~L 81 (179)
T 1jfi_B 19 AAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESL 81 (179)
T ss_dssp HHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 459999999999999999999999999999999999999999999999999999999998744
No 14
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.03 E-value=1.3e-05 Score=58.85 Aligned_cols=61 Identities=10% Similarity=0.224 Sum_probs=57.0
Q ss_pred HHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 61 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
..|.|+.+.. ....||..+...|..++.++++.|+.+|..++++.+|+||+..||..|++-
T Consensus 11 a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 11 SLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp HHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 4688888877 679999999999999999999999999999999999999999999999884
No 15
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.98 E-value=2.7e-05 Score=58.42 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=57.7
Q ss_pred HHHHHhhhhcCC-CCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032181 62 YIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (146)
Q Consensus 62 YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLl 123 (146)
-|.|++|++-|| ..||..|...|.....-+...|+.+|..++...+|+||+..||..|+.-+
T Consensus 14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 389999988775 78999999999999999999999999999999999999999999999865
No 16
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.92 E-value=3e-05 Score=58.03 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=58.8
Q ss_pred hHHH-HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032181 58 TYKI-YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (146)
Q Consensus 58 sy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVr 121 (146)
.|.. .|+|+|++..--..||..|...|...+..+...|.+.|...++.+++.+|+.|+||.|++
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 4554 899999998555699999999999999999999999999999999999999999999999
No 17
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.90 E-value=3.3e-05 Score=57.58 Aligned_cols=64 Identities=27% Similarity=0.341 Sum_probs=59.1
Q ss_pred hHHH-HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032181 58 TYKI-YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (146)
Q Consensus 58 sy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVr 121 (146)
.|.. .|+|+|++..--..||..|-..|...+..+...|.+.|...++.+++.+|++|+||.||+
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 4554 799999998766789999999999999999999999999999999999999999999999
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.88 E-value=3.6e-05 Score=59.77 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=57.9
Q ss_pred HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 62 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 62 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
-|-|++|+.-|+..||..|-.-|...+..+.+-|+.+|..++.+.+|+||+..||..|+.-
T Consensus 9 ~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 9 AIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp HHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 4789999998999999999999999999999999999999999999999999999999954
No 19
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.88 E-value=3.8e-05 Score=57.94 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=58.7
Q ss_pred hHHH-HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032181 58 TYKI-YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (146)
Q Consensus 58 sy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVr 121 (146)
.|.. .|+|+|++..--..||..|.-.|...+..+...|.+.|...++.+++.+|++|+||.|++
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 4544 899999997555699999999999999999999999999999999999999999999998
No 20
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.86 E-value=3.4e-05 Score=58.35 Aligned_cols=64 Identities=25% Similarity=0.336 Sum_probs=58.7
Q ss_pred hHHH-HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032181 58 TYKI-YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (146)
Q Consensus 58 sy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVr 121 (146)
.|.. .|+|+|++..--..||..|...|...+..+...|.+.|...++.+++.+|+.|+||.||+
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 4554 899999997555699999999999999999999999999999999999999999999999
No 21
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.84 E-value=7e-05 Score=51.41 Aligned_cols=60 Identities=12% Similarity=0.238 Sum_probs=53.4
Q ss_pred HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 62 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 62 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
.|.++.+++.= ..+|.++-..|-.-+.+....|+.||.+++++.+|+|||..||..|+++
T Consensus 11 ~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 11 SMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 57777777643 4789999999999999999999999999999999999999999999874
No 22
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.80 E-value=5.2e-05 Score=58.74 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=58.8
Q ss_pred hHHH-HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032181 58 TYKI-YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (146)
Q Consensus 58 sy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVr 121 (146)
.|.. .|+|+||+..--..||..|...|...+.++...|.+.|...++.+++.+|++|+||.||+
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 4544 799999998656699999999999999999999999999999999999999999999999
No 23
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.75 E-value=8e-05 Score=53.02 Aligned_cols=60 Identities=23% Similarity=0.176 Sum_probs=54.7
Q ss_pred HHHHHhhhhcCC-CCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 62 YIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 62 YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
=|.|++|.- || ..||..|.-.|.-.+..+...|+.+|...++.++|+||+.+||+.||+-
T Consensus 24 rIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~ 84 (97)
T 1n1j_B 24 RIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITK 84 (97)
T ss_dssp HHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhc
Confidence 489999986 77 5699999999999999999999999999999999999999999999863
No 24
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.70 E-value=8.7e-05 Score=55.90 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=58.5
Q ss_pred hhHHH-HHHHHhhhhcC-CCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032181 57 ETYKI-YIFKVLKQVHP-DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (146)
Q Consensus 57 esy~~-YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVr 121 (146)
-.|-. .|+|+|+...- ...||..|.-.|...+..+...|.+.|...++.+++.+|+.|+||.||+
T Consensus 26 LqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 26 LQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp CSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred ccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 34554 79999999864 3589999999999999999999999999999999999999999999998
No 25
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.68 E-value=9.3e-05 Score=54.67 Aligned_cols=60 Identities=25% Similarity=0.148 Sum_probs=53.8
Q ss_pred HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032181 62 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (146)
Q Consensus 62 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVr 121 (146)
=|.|++|.......||..|.-+|.-.+.-+...|+.+|...++.++|+||+.+||+.||+
T Consensus 46 RIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 46 RIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp HHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 499999976333678999999998888888899999999999999999999999999996
No 26
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.59 E-value=0.00037 Score=48.55 Aligned_cols=61 Identities=18% Similarity=0.358 Sum_probs=56.5
Q ss_pred HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 62 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 62 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
-+...++||.|...+...+..+|-.+.+|+.+.+.+.|.+||++.+-.||..+|||....-
T Consensus 10 ~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 10 KLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 3678899999999999999999999999999999999999999999999999999987653
No 27
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=97.58 E-value=0.00036 Score=48.65 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=58.0
Q ss_pred hhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 57 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 57 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
-.|...|..+..+..+|..+++.|+..|.....+..-.+..++..++.+.+|.||..+|||-|.|+
T Consensus 7 ~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 7 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 346666666666667889999999999999999999999999999999999999999999999986
No 28
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.56 E-value=0.00051 Score=46.78 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=55.8
Q ss_pred HHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhC
Q 032181 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVL 124 (146)
Q Consensus 61 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLlL 124 (146)
..|.++||.-.= ..+|..+...|-.|+......|+.+|..++.+.+|+||+..||..|++..+
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 458889987532 467999999999999999999999999999999999999999999998654
No 29
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.51 E-value=0.00011 Score=52.59 Aligned_cols=60 Identities=13% Similarity=0.254 Sum_probs=51.5
Q ss_pred HHHHHHhhhhcCC-CCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032181 61 IYIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (146)
Q Consensus 61 ~YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVr 121 (146)
.=|.|++|. .|| ..||..|.-.|.-....+.+.|+.+|...++.++++||+.+||+.||+
T Consensus 15 aRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 15 ARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp HHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred HHHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 359999997 566 679999999999999999999999999999999999999999999986
No 30
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.45 E-value=0.00021 Score=53.25 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=54.8
Q ss_pred HHHHHhhhhcC--CCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 62 YIFKVLKQVHP--DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 62 YIyKVLKQVhp--d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
.|.|+++++-. ++.+|.+++..|..++.+.++.|+.++..++++.+|+||+..||..++|-
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 36777777743 57799999999999999999999999999999999999999999999873
No 31
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.43 E-value=0.00036 Score=55.16 Aligned_cols=72 Identities=24% Similarity=0.243 Sum_probs=60.9
Q ss_pred hhHHH-HHHHHhhhhcC-CCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHHHH
Q 032181 57 ETYKI-YIFKVLKQVHP-DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAK 130 (146)
Q Consensus 57 esy~~-YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGELaK 130 (146)
-.|.. .|+|+||+..- ...||..|...|...+..+...|.+.|...++.+++.+|++++||.|++ -..||..
T Consensus 104 l~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~--nD~eL~~ 177 (192)
T 2jss_A 104 LQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR--GDDELDS 177 (192)
T ss_dssp CCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH--TSHHHHH
T ss_pred CcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh--ccHHHHH
Confidence 34544 79999999744 3689999999999999999999999999999999999999999999999 3444433
No 32
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00059 Score=48.77 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=52.6
Q ss_pred HHHHhhhhcC--CCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 63 IFKVLKQVHP--DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 63 IyKVLKQVhp--d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
|-++..++-+ ++.+|..++.-|..++.+.++.|+.++..++++.+|+||+..||..++|-
T Consensus 18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4556666644 36689999999999999999999999999999999999999999998873
No 33
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.34 E-value=0.00027 Score=51.97 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=54.6
Q ss_pred HHHHHhhhhcC--CCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 62 YIFKVLKQVHP--DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 62 YIyKVLKQVhp--d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
.|-|+++++-- +..+|.+++..|..|+.+.++.|+.++..++++.+|+||+..||..|+|-
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 46677777643 57899999999999999999999999999999999999999999999884
No 34
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=97.29 E-value=0.0015 Score=46.04 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=56.3
Q ss_pred hhHHHHHHHHhhhhc--CCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032181 57 ETYKIYIFKVLKQVH--PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (146)
Q Consensus 57 esy~~YIyKVLKQVh--pd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLl 123 (146)
-.|...|..+-.+.. .|..+++.|+..|..-..+..-.+.+++..++.+.+|.||..+|||-|.|+-
T Consensus 7 lPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rir 75 (82)
T 3nqj_A 7 LPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 75 (82)
T ss_dssp HHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHc
Confidence 345555555555544 4789999999999999999999999999999999999999999999999973
No 35
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.27 E-value=0.0011 Score=50.56 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=56.4
Q ss_pred hHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 58 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 58 sy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
-|...|..+..+...|..+++.|+..|.....+.+-.|.+++..++.+.+|.||..+|||-|.|+
T Consensus 67 PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 67 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp HHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence 34555555555556899999999999999999999999999999999999999999999999986
No 36
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=97.20 E-value=0.0013 Score=47.73 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=55.7
Q ss_pred hhHHHHHHHHhhhhcC---CCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 57 ETYKIYIFKVLKQVHP---DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 57 esy~~YIyKVLKQVhp---d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
-.|...|..+..+..+ |..+++.|+..|.....+.+-.+.+++..++.+.+|.||..+|||-|.|+
T Consensus 31 ~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 31 MPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 4566666666666655 78999999999999998888899999999999999999999999999885
No 37
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=97.16 E-value=0.0015 Score=62.01 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=66.7
Q ss_pred chhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHHHHhHHHh
Q 032181 56 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSE 135 (146)
Q Consensus 56 ~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGELaKhAvse 135 (146)
..-|-.-|+|||.||||+++|..+|+.-+++++-.++-.|+. ....|..|++..|.-.||+.|.++|+.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1049)
T 3ksy_A 20 RGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ----------AQPRSASDVEERVQKSFPHPIDKWAIAD 89 (1049)
T ss_dssp SSSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH----------TCCCSHHHHHHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc----------CCCccHHHHHHHHHHhCCCchHHHHHHH
Confidence 466888899999999999999999999999999888777763 4688999999999999999999999999
Q ss_pred hhhhh
Q 032181 136 GTKAV 140 (146)
Q Consensus 136 GtkAV 140 (146)
+--++
T Consensus 90 ~~~~~ 94 (1049)
T 3ksy_A 90 AQSAI 94 (1049)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 86664
No 38
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.07 E-value=0.00083 Score=51.70 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=52.8
Q ss_pred HHHHhhhhc--CCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 63 IFKVLKQVH--PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 63 IyKVLKQVh--pd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
|-|+.+++- .++.||.+++..|..|+.+.++.|+.++..++++.+|+||+..||..++|-
T Consensus 25 VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 25 TGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 445555552 357899999999999999999999999999999999999999999999884
No 39
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=97.04 E-value=0.0017 Score=49.87 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhhc--CCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032181 59 YKIYIFKVLKQVH--PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (146)
Q Consensus 59 y~~YIyKVLKQVh--pd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLl 123 (146)
|...|..+-.+.. -|..+++.|+..|.....+.+-.|.++|..++.+.+|.||..+|||-|.|+-
T Consensus 67 F~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrir 133 (140)
T 3nqu_A 67 FSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 133 (140)
T ss_dssp HHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence 3444444443333 3788999999999998888888898899999999999999999999999974
No 40
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0014 Score=49.16 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=46.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 74 IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 74 ~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
-.||..+..-+...+.++++.|+.+|..++.+.+|+|+|..||.-|++.
T Consensus 63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 5689999999999999999999999999999999999999999999874
No 41
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=96.87 E-value=0.0037 Score=48.86 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=51.8
Q ss_pred HHHHhhhhc------CCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032181 63 IFKVLKQVH------PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (146)
Q Consensus 63 IyKVLKQVh------pd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLl 123 (146)
|-|+++++- -|..+++.|+..|-....+++-.|.++|..++.+.+|.||..+|||-|.||-
T Consensus 83 F~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIr 149 (156)
T 3r45_A 83 FSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 149 (156)
T ss_dssp HHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHc
Confidence 345555543 3678999999999998888888898899999999999999999999999973
No 42
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.86 E-value=0.0022 Score=48.75 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=48.6
Q ss_pred HHHHHhhhhcCC-CCcchHHHHHHHHHHHHHHHHHHHHHhHHh-hhcCCCCcChHHHHHHHH
Q 032181 62 YIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQEASRLA-RYNKKPTITSREIQTAVR 121 (146)
Q Consensus 62 YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La-~~nkk~TltsrEIqtAVr 121 (146)
-|.|++|.- || ..||..|.-+|.-.+.-+...|+.+|...+ ..++|+||+.++|..||+
T Consensus 24 RIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 24 RVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp -----CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred HHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 488999886 77 558999988888888888889999999999 999999999999999997
No 43
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.0091 Score=49.29 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=47.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032181 74 IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (146)
Q Consensus 74 ~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLl 123 (146)
-.||..+..-+...+.++++.|+.+|..++.+.+|+|+|..||.-|++..
T Consensus 177 kRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 177 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999854
No 44
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=90.56 E-value=0.77 Score=37.80 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=53.0
Q ss_pred cchhHHHHHHHHhhhhcC---CCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 55 SIETYKIYIFKVLKQVHP---DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 55 r~esy~~YIyKVLKQVhp---d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
++-.|+..+..|..+..+ |+.+.+.|+.-|..-..+.+-.+=+.+.-.+.+.+|-||..+|||-|.|+
T Consensus 13 ~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarri 83 (235)
T 2l5a_A 13 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRI 83 (235)
T ss_dssp SCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTS
T ss_pred cCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHH
Confidence 456788888888877665 79999999877765444444444456777888999999999999999986
No 45
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=88.84 E-value=2.8 Score=29.35 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=51.2
Q ss_pred HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhc-CCCCcChHHHHHHHHhhC
Q 032181 62 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYN-KKPTITSREIQTAVRLVL 124 (146)
Q Consensus 62 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~n-kk~TltsrEIqtAVrLlL 124 (146)
-|.|+..++. +.++|.....+|..+-.-+.-.|.++|..+..-. ....|.++.|+.|+|.+-
T Consensus 21 ~vKrl~~~~~-~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 21 AIKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp HHHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 3777787775 7889998888888888888889999999887654 455999999999999764
No 46
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=88.63 E-value=2 Score=29.80 Aligned_cols=56 Identities=11% Similarity=0.242 Sum_probs=39.6
Q ss_pred HHHHHhhhhcC--CCCcchHHHHHHHH----HHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032181 62 YIFKVLKQVHP--DIGISSKAMGIMNS----FINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (146)
Q Consensus 62 YIyKVLKQVhp--d~gISskAm~ImnS----fvnDiferIA~EAs~La~~nkk~TltsrEIqtAVr 121 (146)
-|.|+|++.+. .+.|++.|+..+.- ||+.-+.|-+.+| .-.....|...+++.-.-
T Consensus 13 lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a----~~e~~~~le~~~LEki~p 74 (81)
T 3b0b_C 13 TVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQA----QAEDLEKVDIEHVEKVLP 74 (81)
T ss_dssp HHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCCeecHHHHHHHHH
Confidence 58899999877 59999999887554 4444445544443 445667899999887443
No 47
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=88.29 E-value=2.6 Score=29.49 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=41.0
Q ss_pred HHHHHHhhhhc--CCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 61 IYIFKVLKQVH--PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 61 ~YIyKVLKQVh--pd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
.-|.|+|++-+ .++.||..|+.++.-+++=+.......|...+.-....+|+..+++.-.-+
T Consensus 16 ~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 16 ELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp HHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 35899999876 569999999888665553333333333344444456678999998874443
No 48
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=86.83 E-value=1.8 Score=41.21 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=52.8
Q ss_pred hhHHH-HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 57 ETYKI-YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 57 esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
-.|-. -|+|.||..+- -.|+..|.--|...+..+.-.|-.-|..-++.+++..|+.|+||.|++-
T Consensus 103 l~~pv~~~~~~l~~~~~-~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 103 LSLPVEKIHPLLKEVLG-YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp CSSCHHHHHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred ccccHHHHHHHhhcccc-cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 34543 69999966554 5889999888888888888888888888889999999999999999963
No 49
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=74.52 E-value=5.3 Score=25.97 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032181 91 IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPG 126 (146)
Q Consensus 91 iferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPG 126 (146)
=++.|+.||+..+-......||..|+..|++-+.|+
T Consensus 39 Di~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 39 DINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp HHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 345688899998888888899999999999999986
No 50
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=73.88 E-value=4.8 Score=26.93 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=29.8
Q ss_pred HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHHH
Q 032181 92 FEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 129 (146)
Q Consensus 92 ferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGELa 129 (146)
+..|+.||+-.+-......||-.|+..|++-+.||-..
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKK 77 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccc
Confidence 45688888888877778899999999999999998543
No 51
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=71.60 E-value=5.1 Score=26.25 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=28.9
Q ss_pred HHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchH
Q 032181 93 EKLAQEASRLARYNKKPTITSREIQTAVRLVLPGE 127 (146)
Q Consensus 93 erIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGE 127 (146)
..|+.||+..+-...+..||..|++.|++-++.|.
T Consensus 38 ~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 38 AAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 45888888888888888999999999999998664
No 52
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=71.07 E-value=13 Score=28.96 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=44.4
Q ss_pred cCCCCcchHHHHHHHHHHHH-------HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHH
Q 032181 71 HPDIGISSKAMGIMNSFIND-------IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGEL 128 (146)
Q Consensus 71 hpd~gISskAm~ImnSfvnD-------iferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGEL 128 (146)
.++..||.+++..+..+... -...+..-|..++....+.+|+..+|..|+.++|..-+
T Consensus 263 ~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 263 LPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp GGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 34568999998887776543 34466666777787788889999999999999886543
No 53
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=69.56 E-value=4.9 Score=35.69 Aligned_cols=65 Identities=25% Similarity=0.402 Sum_probs=47.9
Q ss_pred hHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHH------------------HHHHHHHHhHHhhhcCCCCcChHHHHHH
Q 032181 58 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDI------------------FEKLAQEASRLARYNKKPTITSREIQTA 119 (146)
Q Consensus 58 sy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDi------------------ferIA~EAs~La~~nkk~TltsrEIqtA 119 (146)
....||..+-..++| .+|.++...|..+..++ ++.|..-|.-+|....+.+++..|+..|
T Consensus 506 ~l~~~i~~ar~~~~p--~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~A 583 (595)
T 3f9v_A 506 TLRKYIAYARKYVTP--KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERA 583 (595)
T ss_dssp TTHHHHHHHHHHHCC--CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHH
Confidence 345565555555677 56777777777665432 5677777888888899999999999999
Q ss_pred HHhhC
Q 032181 120 VRLVL 124 (146)
Q Consensus 120 VrLlL 124 (146)
++|+.
T Consensus 584 i~l~~ 588 (595)
T 3f9v_A 584 INIMR 588 (595)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 54
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=69.17 E-value=4.7 Score=27.09 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=30.1
Q ss_pred HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032181 92 FEKLAQEASRLARYNKKPTITSREIQTAVRLVLPG 126 (146)
Q Consensus 92 ferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPG 126 (146)
++.|+.||+-.+-......||..|+..|+.-+.|+
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 45688899888877778999999999999998886
No 55
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=63.69 E-value=7.9 Score=24.87 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=29.3
Q ss_pred HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032181 92 FEKLAQEASRLARYNKKPTITSREIQTAVRLVLPG 126 (146)
Q Consensus 92 ferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPG 126 (146)
++.|+.||+..+-......||..|+..|++-++.+
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 45688999988888888999999999999877653
No 56
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=60.66 E-value=58 Score=25.45 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhhcCCCCcchHHHHHHHHHHH----HHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHHHHhHHH
Q 032181 59 YKIYIFKVLKQVHPDIGISSKAMGIMNSFIN----DIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVS 134 (146)
Q Consensus 59 y~~YIyKVLKQVhpd~gISskAm~ImnSfvn----DiferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGELaKhAvs 134 (146)
...++.+.+.+. +..++..++..+-.+.. .-...+...|..++..+...+||..+|+.|+.+++...-....+.
T Consensus 264 ~~~il~~~~~~~--~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~ 341 (368)
T 3uk6_A 264 TKQILRIRCEEE--DVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMK 341 (368)
T ss_dssp HHHHHHHHHHHT--TCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHHHHHHHHC
T ss_pred HHHHHHHHHHHc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 344555555542 35688888877666654 133456677777887888899999999999999887655544444
Q ss_pred h
Q 032181 135 E 135 (146)
Q Consensus 135 e 135 (146)
+
T Consensus 342 ~ 342 (368)
T 3uk6_A 342 E 342 (368)
T ss_dssp -
T ss_pred H
Confidence 3
No 57
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=56.55 E-value=63 Score=28.23 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhhc---CCCCcchHHHHHHHHHHH-------------HHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 59 YKIYIFKVLKQVH---PDIGISSKAMGIMNSFIN-------------DIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 59 y~~YIyKVLKQVh---pd~gISskAm~ImnSfvn-------------DiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
...|+..+.++.. ....++.+|+..|-.+-. .-+..|..+|..+++...+..|+..+|+.|++.
T Consensus 295 ~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 295 RRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4445544444443 446899999887766432 224467778888999899999999999999965
No 58
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=55.32 E-value=40 Score=22.26 Aligned_cols=49 Identities=22% Similarity=0.146 Sum_probs=36.8
Q ss_pred HHHHHHhhhhcCCCCcchHHHHHHHHHHHHH---------HHHHHHHHhHHhhhcCCCC
Q 032181 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDI---------FEKLAQEASRLARYNKKPT 110 (146)
Q Consensus 61 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDi---------ferIA~EAs~La~~nkk~T 110 (146)
..++.+..|..-. .+|..-+..|+.+++|. =..|..+|.+.+-.+++..
T Consensus 2 ~~~~~~~e~~g~g-~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~~ 59 (83)
T 2i5u_A 2 NAIRSIWENNGFG-LMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANARN 59 (83)
T ss_dssp HHHHHHHHTTTSC-SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred chHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCCC
Confidence 4567777777335 88988888999998887 5778888888887665543
No 59
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=54.39 E-value=72 Score=24.53 Aligned_cols=68 Identities=9% Similarity=0.037 Sum_probs=47.9
Q ss_pred HHHHHHHHhhhhcCCCCcchHHHHHHHHHHH----HH--HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032181 59 YKIYIFKVLKQVHPDIGISSKAMGIMNSFIN----DI--FEKLAQEASRLARYNKKPTITSREIQTAVRLVLPG 126 (146)
Q Consensus 59 y~~YIyKVLKQVhpd~gISskAm~ImnSfvn----Di--ferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPG 126 (146)
...++...+.+...+..++..++..+..+.. |+ ...+...|..++......+||..+|+.|+..+.+.
T Consensus 202 ~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 275 (386)
T 2qby_A 202 LEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERD 275 (386)
T ss_dssp HHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhc
Confidence 4445555566566667888888877766654 11 23477778888887788899999999988766543
No 60
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=54.11 E-value=73 Score=24.55 Aligned_cols=69 Identities=7% Similarity=0.042 Sum_probs=48.6
Q ss_pred hhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHH----H--HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCc
Q 032181 57 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN----D--IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLP 125 (146)
Q Consensus 57 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvn----D--iferIA~EAs~La~~nkk~TltsrEIqtAVrLlLP 125 (146)
+....++.+.+.+...+..++..++..+..+.. | ....+...|..++......+|+..+|..|+..+..
T Consensus 204 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 204 PQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 344456666666555567788888887777765 2 23466677777777777889999999999876643
No 61
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=51.51 E-value=38 Score=26.44 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=27.8
Q ss_pred HHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHH
Q 032181 94 KLAQEASRLARYNKKPTITSREIQTAVRLVLPGEL 128 (146)
Q Consensus 94 rIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGEL 128 (146)
.+..-|..++..+.+..++..||+.+++.+|..-+
T Consensus 268 ~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~ 302 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRI 302 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhc
Confidence 45555666788889899999999999999986443
No 62
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=50.69 E-value=27 Score=24.71 Aligned_cols=64 Identities=17% Similarity=0.329 Sum_probs=37.1
Q ss_pred HHHHhhhh--cCCCCcchHHHHHH----HHHHHHHHHHHHHHHhHHhhh---cCCCCcChHHHHHHHHhhCch
Q 032181 63 IFKVLKQV--HPDIGISSKAMGIM----NSFINDIFEKLAQEASRLARY---NKKPTITSREIQTAVRLVLPG 126 (146)
Q Consensus 63 IyKVLKQV--hpd~gISskAm~Im----nSfvnDiferIA~EAs~La~~---nkk~TltsrEIqtAVrLlLPG 126 (146)
|-|+|.+- .+++.||..|+..+ +-||+.-+-|-..+.-.+..- ..-.+|+..|+..=+.|||-.
T Consensus 7 laRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkiaGlL~~~ 79 (88)
T 3v9r_B 7 LIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIVGLLLMD 79 (88)
T ss_dssp HHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHHHHHHHH
Confidence 56777755 45699999998874 455555555544444332221 122478888888887777754
No 63
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=48.16 E-value=24 Score=26.47 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=28.9
Q ss_pred HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032181 92 FEKLAQEASRLARYNKKPTITSREIQTAVRLVLPG 126 (146)
Q Consensus 92 ferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPG 126 (146)
++.+..+|..++....+.+||..++..|+..++-|
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhcC
Confidence 34677788888888888999999999999988754
No 64
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=46.13 E-value=49 Score=24.97 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=29.9
Q ss_pred HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032181 91 IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPG 126 (146)
Q Consensus 91 iferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPG 126 (146)
-.+.+..+|...+....+.+||..+|+.|++.+++.
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence 345588888888888888999999999999988753
No 65
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=39.23 E-value=40 Score=26.59 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=51.3
Q ss_pred hhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhC
Q 032181 57 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVL 124 (146)
Q Consensus 57 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLlL 124 (146)
.....+|.+.+++- +..|+.+|+..+-..++.=+..+..|--+|+.|....+||..+|+..+-...
T Consensus 145 ~~l~~~l~~~~~~~--g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~ 210 (343)
T 1jr3_D 145 AQLPRWVAARAKQL--NLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAA 210 (343)
T ss_dssp THHHHHHHHHHHHT--TCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhh
Confidence 44566777777764 4679999999988887766778888888898886556899999988766544
No 66
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=38.58 E-value=54 Score=28.67 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=36.7
Q ss_pred HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch-----------HHHHhHHHhhhhhhhc
Q 032181 92 FEKLAQEASRLARYNKKPTITSREIQTAVRLVLPG-----------ELAKHAVSEGTKAVTK 142 (146)
Q Consensus 92 ferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPG-----------ELaKhAvseGtkAV~k 142 (146)
++.+..+|..++....+..||..|++.|+.-+++| |.-.-|+-|.-.||..
T Consensus 240 L~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~ 301 (499)
T 2dhr_A 240 LENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAA 301 (499)
T ss_dssp HHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHH
Confidence 35567788878877777899999999999998876 2334455555555543
No 67
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.48 E-value=34 Score=29.49 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=31.9
Q ss_pred HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchH
Q 032181 91 IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGE 127 (146)
Q Consensus 91 iferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGE 127 (146)
=++.|+.||+-++-..++..||..|++.|++-|+|+.
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCcc
Confidence 3478899999998888889999999999999988753
No 68
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=35.31 E-value=88 Score=25.19 Aligned_cols=69 Identities=7% Similarity=0.272 Sum_probs=42.6
Q ss_pred cchhHHHHHHHHhhhhcCC-CCcchHHHHHHHHHHHHHHHHHHHHHhHHhhh------------------cCCCCcChHH
Q 032181 55 SIETYKIYIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQEASRLARY------------------NKKPTITSRE 115 (146)
Q Consensus 55 r~esy~~YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~------------------nkk~TltsrE 115 (146)
+...|...+.+++-.+--| +.+|++.-.++. ++|+|-.++.+-..++.. |+...||..|
T Consensus 56 ~dp~fR~~F~~mc~siGVDPLa~s~kg~~~lg--~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dD 133 (233)
T 1u5t_A 56 ASPEFRSKFMHMCSSIGIDPLSLFDRDKHLFT--VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDD 133 (233)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHTTSSGGGTT--HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCCccCCccccccC--cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHH
Confidence 4567888888888777666 222333212222 366666666665555433 3446899999
Q ss_pred HHHHHHhhCc
Q 032181 116 IQTAVRLVLP 125 (146)
Q Consensus 116 IqtAVrLlLP 125 (146)
|..|+..+=|
T Consensus 134 i~rAik~L~~ 143 (233)
T 1u5t_A 134 LEKSIDMLKS 143 (233)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhhh
Confidence 9999997744
No 69
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=34.11 E-value=53 Score=25.02 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=30.5
Q ss_pred hHHHHHHHHhhhh--------cCC--CCcchHHHHHHHHHHHHHHHHHH
Q 032181 58 TYKIYIFKVLKQV--------HPD--IGISSKAMGIMNSFINDIFEKLA 96 (146)
Q Consensus 58 sy~~YIyKVLKQV--------hpd--~gISskAm~ImnSfvnDiferIA 96 (146)
....-|.++|.|. +++ -.||++.++.||.+...|++.|+
T Consensus 98 asg~iiR~~LQqLE~~g~Vek~~~gGR~lT~~G~~~LD~iA~~v~~~~~ 146 (146)
T 3iz6_S 98 SSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDVTIA 146 (146)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEETTTEEEECHHHHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHCCCeEecCCCCcEECHhHHHHHHHHHHHHHHhhC
Confidence 4456788888874 564 46899999999999999887663
No 70
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=33.84 E-value=1.6e+02 Score=22.75 Aligned_cols=66 Identities=14% Similarity=0.045 Sum_probs=42.2
Q ss_pred hHHHHHHHHhhhhcCCCCcchHHHHHHHHHHH----HH--HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCc
Q 032181 58 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN----DI--FEKLAQEASRLARYNKKPTITSREIQTAVRLVLP 125 (146)
Q Consensus 58 sy~~YIyKVLKQVhpd~gISskAm~ImnSfvn----Di--ferIA~EAs~La~~nkk~TltsrEIqtAVrLlLP 125 (146)
....++.+.+.+..++..++..++..+..+.. |+ ...+...|..++. ...+|+..+|..|+..+..
T Consensus 201 ~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 201 QLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp HHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhc
Confidence 34445555665556667888888877666654 11 1234455555555 5578999999998876643
No 71
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}
Probab=33.25 E-value=60 Score=22.15 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhC
Q 032181 86 SFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVL 124 (146)
Q Consensus 86 SfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLlL 124 (146)
-|+|.|+-.+..||.+|..-. ..+..||..|+++-+
T Consensus 18 fi~nRll~~~~~eA~~ll~eG---va~~~dID~a~~~g~ 53 (110)
T 3ctv_A 18 INPMDFTFVEINEAVKLVEMG---VATPQDIDTAIKLGL 53 (110)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT---SSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHcC
Confidence 466788889999999998843 349999999999754
No 72
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.16 E-value=57 Score=20.74 Aligned_cols=39 Identities=28% Similarity=0.424 Sum_probs=20.7
Q ss_pred HHHHHHHhhhhcCCCCcc-hHHHHHHHHHHHHHHHHHHHHH
Q 032181 60 KIYIFKVLKQVHPDIGIS-SKAMGIMNSFINDIFEKLAQEA 99 (146)
Q Consensus 60 ~~YIyKVLKQVhpd~gIS-skAm~ImnSfvnDiferIA~EA 99 (146)
..-.++..++.|||..-+ ..+...+ ..|+.-|+-|....
T Consensus 25 k~ayr~l~~~~HPD~~~~~~~a~~~f-~~i~~Ay~~L~d~~ 64 (79)
T 2dn9_A 25 KKAYYQLAKKYHPDTNKDDPKAKEKF-SQLAEAYEVLSDEV 64 (79)
T ss_dssp HHHHHHHHHHTCTTTCSSCTTHHHHH-HHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHH-HHHHHHHHHHCCHH
Confidence 344567788999997653 2332222 23444444444433
No 73
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.14 E-value=40 Score=29.57 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchH
Q 032181 87 FINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGE 127 (146)
Q Consensus 87 fvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGE 127 (146)
|.--=++.|+.||.-++-...+..||..|+..|++-++|+.
T Consensus 387 fSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 387 LSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCC
Confidence 44334577899999999888889999999999999888763
No 74
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=31.76 E-value=35 Score=26.83 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=35.0
Q ss_pred cccchhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHH---HHHHHHHHhHHh
Q 032181 53 KKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDI---FEKLAQEASRLA 103 (146)
Q Consensus 53 kkr~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDi---ferIA~EAs~La 103 (146)
--|..+|++-+|-..+|-|||+... .+|++||.-| ||+==.||..+.
T Consensus 94 A~RIVsfaT~FF~~yq~qhPd~~~e----e~L~~Fm~lIgGGiEqGF~EArdIL 143 (175)
T 3sjr_A 94 SQHLLLGMEILMELYRQQHPDWTAP----AIRQAFAPLARAGLERGYQEACQVL 143 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3357899999999999999998765 5788888665 455556665543
No 75
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.04 E-value=40 Score=29.74 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=30.9
Q ss_pred HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032181 92 FEKLAQEASRLARYNKKPTITSREIQTAVRLVLPG 126 (146)
Q Consensus 92 ferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPG 126 (146)
++.|+.||.-++-...+..||..|+..|+.-|++|
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcC
Confidence 46788999998888888999999999999988876
No 76
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=29.84 E-value=1.4e+02 Score=20.55 Aligned_cols=59 Identities=10% Similarity=0.134 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032181 59 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (146)
Q Consensus 59 y~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAVr 121 (146)
...++.+.+.+. +..++..++..+-.....-...+......++.+. .+||..+|+.++.
T Consensus 166 ~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 166 MKKRLLEICEKE--GVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHH--TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 344555555543 2447777766555444433344444444455444 6899999998876
No 77
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=29.83 E-value=1e+02 Score=23.78 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=17.4
Q ss_pred CCCcChHHHHHHHHhhCchHHHHhHHHhh
Q 032181 108 KPTITSREIQTAVRLVLPGELAKHAVSEG 136 (146)
Q Consensus 108 k~TltsrEIqtAVrLlLPGELaKhAvseG 136 (146)
+.+|+..|+..++..++ +....++.+|
T Consensus 59 ~~~lsk~da~~vl~~l~--~~i~~~L~~G 85 (204)
T 2iie_A 59 KLGLSKRDAKELVELFF--EEIRRALENG 85 (204)
T ss_dssp HHCCCHHHHHHHHHHHH--HHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHH--HHHHHHHhCC
Confidence 45678888888777766 4444555555
No 78
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=29.34 E-value=1e+02 Score=21.36 Aligned_cols=59 Identities=5% Similarity=0.141 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHH
Q 032181 59 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAV 120 (146)
Q Consensus 59 y~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsrEIqtAV 120 (146)
...|+...+.+. +..++..++..+-....-....+-..+-.++.+.. .+||..+|..++
T Consensus 190 ~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~-~~i~~~~v~~~~ 248 (250)
T 1njg_A 190 IRHQLEHILNEE--HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHHT--TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTT-SSBCHHHHHHHS
T ss_pred HHHHHHHHHHhc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC-ceecHHHHHHHh
Confidence 344555555542 34566666655444433233333333333344443 488888888765
No 79
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=29.08 E-value=2.1e+02 Score=25.68 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=22.1
Q ss_pred HHhHHhhhcCCCCcChHHHHHHHHhhC
Q 032181 98 EASRLARYNKKPTITSREIQTAVRLVL 124 (146)
Q Consensus 98 EAs~La~~nkk~TltsrEIqtAVrLlL 124 (146)
-|--+|+...+..++..||+.|++|+.
T Consensus 458 lA~A~A~L~gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 458 LAKAHARMRLSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 344577888899999999999999874
No 80
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=28.33 E-value=82 Score=25.42 Aligned_cols=68 Identities=10% Similarity=0.187 Sum_probs=39.3
Q ss_pred chhHHHHHHHHhhhhcCCCCcchHH--HHHHHHHHHHHHHHHHHHHhHHhhh------------------cC-----CCC
Q 032181 56 IETYKIYIFKVLKQVHPDIGISSKA--MGIMNSFINDIFEKLAQEASRLARY------------------NK-----KPT 110 (146)
Q Consensus 56 ~esy~~YIyKVLKQVhpd~gISskA--m~ImnSfvnDiferIA~EAs~La~~------------------nk-----k~T 110 (146)
...|...+.+++-.+--|---|++. -.++. ++|++-.++.+-..++.. |+ ...
T Consensus 37 dp~fR~~F~~mc~siGVDPlas~kg~ws~~lG--~gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~ 114 (234)
T 3cuq_A 37 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLG--VGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQD 114 (234)
T ss_dssp CHHHHHHHHHHHHHHTCCTTSCTTSHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSS
T ss_pred CHHHHHHHHHHHHHcCCCcccCCcchhhhhcC--cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCc
Confidence 5678888888888877772223331 01222 245555554444433322 21 168
Q ss_pred cChHHHHHHHHhhCc
Q 032181 111 ITSREIQTAVRLVLP 125 (146)
Q Consensus 111 ltsrEIqtAVrLlLP 125 (146)
||..||..|+..+=+
T Consensus 115 IS~dDi~rAik~L~~ 129 (234)
T 3cuq_A 115 VSQDDLIRAIKKLKA 129 (234)
T ss_dssp CCHHHHHHHHHHHGG
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999997744
No 81
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=28.31 E-value=74 Score=25.79 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=18.3
Q ss_pred cCCCCcChHHHHHHHHhhCchHH
Q 032181 106 NKKPTITSREIQTAVRLVLPGEL 128 (146)
Q Consensus 106 nkk~TltsrEIqtAVrLlLPGEL 128 (146)
++.-+|+-+|+..|.-++.-|.|
T Consensus 144 ~~~G~I~f~ef~~aLs~l~rG~l 166 (261)
T 1eg3_A 144 GRTGRIRVLSFKTGIISLCKAHL 166 (261)
T ss_dssp TCCSEEEHHHHHHHHHHTSSSCH
T ss_pred CCCceEeHHHHHHHHHHHcCCCH
Confidence 66678899999988888876654
No 82
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.73 E-value=86 Score=19.85 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=14.1
Q ss_pred HHHHHHhhhhcCCCCcchHH
Q 032181 61 IYIFKVLKQVHPDIGISSKA 80 (146)
Q Consensus 61 ~YIyKVLKQVhpd~gISskA 80 (146)
.-.++..++.|||..-...+
T Consensus 26 ~ayr~l~~~~HPDk~~~~~~ 45 (78)
T 2ctp_A 26 KAYRRLALKFHPDKNHAPGA 45 (78)
T ss_dssp HHHHHHHTTSCTTTCSSHHH
T ss_pred HHHHHHHHHHCcCCCCCccH
Confidence 34567788999998765443
No 83
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=26.55 E-value=96 Score=20.25 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=13.9
Q ss_pred HHHHHHHhhhhcCCCCcchH
Q 032181 60 KIYIFKVLKQVHPDIGISSK 79 (146)
Q Consensus 60 ~~YIyKVLKQVhpd~gISsk 79 (146)
..-.++..++.|||..-...
T Consensus 35 k~ayr~l~~~~HPDk~~~~~ 54 (88)
T 2cug_A 35 KKAYKKLAREWHPDKNKDPG 54 (88)
T ss_dssp HHHHHHHHHHSCTTTCCSTT
T ss_pred HHHHHHHHHHHCcCCCCChh
Confidence 34456778899999766543
No 84
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=25.36 E-value=22 Score=26.31 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=23.7
Q ss_pred HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHH
Q 032181 91 IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGEL 128 (146)
Q Consensus 91 iferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGEL 128 (146)
-...+..+|...+....+.+|+..++..|+.-++|+.-
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccChh
Confidence 34566777777777777889999999999999888753
No 85
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.83 E-value=1e+02 Score=20.16 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=14.2
Q ss_pred HHHHHHhhhhcCCCCcchHH
Q 032181 61 IYIFKVLKQVHPDIGISSKA 80 (146)
Q Consensus 61 ~YIyKVLKQVhpd~gISskA 80 (146)
.-.++..++.|||..-+..+
T Consensus 26 ~ayr~l~~~~HPDk~~~~~a 45 (88)
T 2ctr_A 26 KAFHKLAMKYHPDKNKSPDA 45 (88)
T ss_dssp HHHHHHHHHTCTTTCCSHHH
T ss_pred HHHHHHHHHHCcCCCCChHH
Confidence 34567788999997765443
No 86
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.98 E-value=2.1e+02 Score=20.67 Aligned_cols=41 Identities=29% Similarity=0.522 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHHHHhHHHh
Q 032181 87 FINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSE 135 (146)
Q Consensus 87 fvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGELaKhAvse 135 (146)
|=.++|++|..|.-.. +-||.-.| +-||=+-|-||+.|+.|
T Consensus 43 ~Dk~t~dkl~KEVpk~------KlITpsvl--seRlkI~gSLAR~aLre 83 (108)
T 3iz6_V 43 FDKATYDKLLSEVPKY------KQITPSVL--SERLRINGSLARQAIKD 83 (108)
T ss_dssp HSSHHHHHHHHHHHHH------SSEEEHHH--HHHHHTCCHHHHHHHHH
T ss_pred ECHHHHHHHHHHccCC------eEEeHHHH--HhhhcccHHHHHHHHHH
Confidence 4456777887776652 45666554 34666778888887765
No 87
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=23.73 E-value=1.8e+02 Score=19.91 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=17.1
Q ss_pred cchhHHHHHHHHhhhhcCCCC
Q 032181 55 SIETYKIYIFKVLKQVHPDIG 75 (146)
Q Consensus 55 r~esy~~YIyKVLKQVhpd~g 75 (146)
.+|.|..|+-|.++.+--+.+
T Consensus 11 PkEPF~dfVdRl~kal~~e~~ 31 (77)
T 3g21_A 11 PSESFVDFANRLIKAVEGSDL 31 (77)
T ss_dssp TTCCHHHHHHHHHHHHHTSSS
T ss_pred CCccHHHHHHHHHHHHHHhhC
Confidence 469999999999998865544
No 88
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.25 E-value=71 Score=27.57 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032181 87 FINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPG 126 (146)
Q Consensus 87 fvnDiferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPG 126 (146)
|.--=+..|+.||+-++-.+.+..||..|+..|+.-+.|.
T Consensus 386 ~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 386 FNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCC
Confidence 3333356788999998888888999999999999999885
No 89
>2rp5_A Putative uncharacterized protein CEP-1; oligomerization domain, SAM domain, transcription; NMR {Caenorhabditis elegans}
Probab=22.86 E-value=6.1 Score=29.87 Aligned_cols=33 Identities=36% Similarity=0.675 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032181 89 NDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (146)
Q Consensus 89 nDiferIA~EAs~La~~nkk~TltsrEIqtAVrL 122 (146)
+||||+|.-++++|..|-- --|+=--||.+.|+
T Consensus 102 ~~iFE~IGiDssKleKYYd-~FL~yyRiQe~~~~ 134 (136)
T 2rp5_A 102 NDIFERIGIDSSKLSKYYE-AFLSFYRIQEAMKL 134 (136)
T ss_dssp SCHHHHHTCCGGGHHHHHH-HHHHHHHHHHHHHC
T ss_pred HHHHHHhcccHHHHHHHHH-HHHHHHHHHHhccC
Confidence 6899999999999998864 34555567777664
No 90
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.61 E-value=1.5e+02 Score=19.34 Aligned_cols=18 Identities=28% Similarity=0.189 Sum_probs=13.0
Q ss_pred HHHHHHHhhhhcCCCCcc
Q 032181 60 KIYIFKVLKQVHPDIGIS 77 (146)
Q Consensus 60 ~~YIyKVLKQVhpd~gIS 77 (146)
..-.++..++.|||..-+
T Consensus 27 k~ayr~l~~~~HPDk~~~ 44 (92)
T 2dmx_A 27 KKAYRKLALRWHPDKNPD 44 (92)
T ss_dssp HHHHHHHHHHTCTTTCSS
T ss_pred HHHHHHHHHHHCCCCCCc
Confidence 344567788999997654
No 91
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=21.24 E-value=1.1e+02 Score=19.43 Aligned_cols=19 Identities=32% Similarity=0.230 Sum_probs=13.6
Q ss_pred HHHHHHhhhhcCCCCcchH
Q 032181 61 IYIFKVLKQVHPDIGISSK 79 (146)
Q Consensus 61 ~YIyKVLKQVhpd~gISsk 79 (146)
.-..+..++.|||.+=|..
T Consensus 34 ~ayr~l~~~~HPDk~g~~~ 52 (71)
T 2guz_A 34 EVHRKIMLANHPDKGGSPF 52 (71)
T ss_dssp HHHHHHHHHHCGGGTCCHH
T ss_pred HHHHHHHHHHCCCCCCCHH
Confidence 3456788899999875543
No 92
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.23 E-value=82 Score=27.17 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=30.6
Q ss_pred HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032181 91 IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPG 126 (146)
Q Consensus 91 iferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPG 126 (146)
=+..|+.||+-++-...+..||..|+..|++-|.|.
T Consensus 390 Di~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 390 DIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 356788999999888888999999999999987763
No 93
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=21.23 E-value=3.5e+02 Score=22.37 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=38.4
Q ss_pred CCcchHHHHHHHHHH-H-H--HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchH
Q 032181 74 IGISSKAMGIMNSFI-N-D--IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGE 127 (146)
Q Consensus 74 ~gISskAm~ImnSfv-n-D--iferIA~EAs~La~~nkk~TltsrEIqtAVrLlLPGE 127 (146)
..++..++..+-.+. + + .-..+...|.-++..+.+..||..+|+.|..++|-..
T Consensus 384 ~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~ 441 (456)
T 2c9o_A 384 INISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAK 441 (456)
T ss_dssp CCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHH
T ss_pred CCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcChH
Confidence 567888876665554 1 0 1123445566677778889999999999999999753
No 94
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=21.16 E-value=42 Score=23.98 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=26.6
Q ss_pred HHHHHHHhhhhcC-CCCcchHHHHHHHHHHHHHHHHHHHH
Q 032181 60 KIYIFKVLKQVHP-DIGISSKAMGIMNSFINDIFEKLAQE 98 (146)
Q Consensus 60 ~~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~E 98 (146)
...|||+|+-..- +..||.++++|=....++|++-+.++
T Consensus 4 ~~iiYkIL~~L~~~~~~is~e~l~Ise~~~~~il~~L~d~ 43 (102)
T 2hgc_A 4 DKLRYAILKEIFEGNTPLSENDIGVTEDQFDDAVNFLKRE 43 (102)
T ss_dssp -CCHHHHHHHHHHHCSCCCHHHHTSCHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhCCCcCCHHhcCCCHHHHHHHHHHHHHC
Confidence 3457777765532 22499999998888888888777654
No 95
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.05 E-value=80 Score=21.16 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=13.0
Q ss_pred HHHHHHHhhhhcCCCCcc
Q 032181 60 KIYIFKVLKQVHPDIGIS 77 (146)
Q Consensus 60 ~~YIyKVLKQVhpd~gIS 77 (146)
..-.++..++.|||..-.
T Consensus 35 k~ayr~l~~~~HPDk~~~ 52 (99)
T 2yua_A 35 KAAYYRQCFLYHPDRNSG 52 (99)
T ss_dssp HHHHHHHHHHSCTTTCSS
T ss_pred HHHHHHHHHHHCcCCCCC
Confidence 344577888999997653
No 96
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=21.02 E-value=19 Score=21.73 Aligned_cols=10 Identities=50% Similarity=0.524 Sum_probs=8.1
Q ss_pred HHHhhhhcCC
Q 032181 64 FKVLKQVHPD 73 (146)
Q Consensus 64 yKVLKQVhpd 73 (146)
-++||||||-
T Consensus 27 g~elkqitpp 36 (38)
T 3mn5_S 27 GKELKQITPP 36 (38)
T ss_pred cccccccCCC
Confidence 4789999984
No 97
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=20.74 E-value=1.1e+02 Score=26.46 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=26.8
Q ss_pred HHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032181 93 EKLAQEASRLARYNKKPTITSREIQTAVRLVLPG 126 (146)
Q Consensus 93 erIA~EAs~La~~nkk~TltsrEIqtAVrLlLPG 126 (146)
+.+..+|..++....+..|+..++..|+.-+++|
T Consensus 226 ~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 226 ENLVNEAALLAAREGRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcC
Confidence 4566777777777777899999999999988875
No 98
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=20.10 E-value=1.6e+02 Score=20.79 Aligned_cols=60 Identities=3% Similarity=-0.011 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHH---HHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032181 59 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIF---EKLAQEASRLARYNKKPTITSREIQTAVR 121 (146)
Q Consensus 59 y~~YIyKVLKQVhpd~gISskAm~ImnSfvnDif---erIA~EAs~La~~nkk~TltsrEIqtAVr 121 (146)
...++.+.+.+. +..++..++..+-.....-+ ..+...+...+..++ .+||..+|..++.
T Consensus 179 ~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 179 KLAALQRRAAMR--GLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHHT--TCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHc--CCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 344555555542 35677777665554433111 222333333333233 5799888888764
Done!