Query 032182
Match_columns 146
No_of_seqs 153 out of 1103
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 17:19:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_Y 60S ribosomal protein L 100.0 5.5E-58 1.9E-62 354.9 5.8 139 1-141 1-139 (150)
2 3u5e_Y L33, YL33, 60S ribosoma 100.0 4.9E-56 1.7E-60 336.3 7.8 126 1-126 2-127 (127)
3 4a17_S RPL26, 60S ribosomal pr 100.0 1.1E-55 3.8E-60 337.2 5.7 125 1-125 1-125 (135)
4 2zkr_t 60S ribosomal protein L 100.0 2.7E-51 9.1E-56 316.3 7.0 139 1-141 1-140 (145)
5 3j21_U 50S ribosomal protein L 100.0 1.3E-49 4.5E-54 299.0 8.2 116 7-122 4-120 (121)
6 1vq8_T 50S ribosomal protein L 100.0 5.5E-49 1.9E-53 295.3 8.2 118 7-124 1-119 (120)
7 3bbo_W Ribosomal protein L24; 99.9 5E-30 1.7E-34 204.9 -1.5 120 12-133 21-165 (191)
8 3v2d_Y 50S ribosomal protein L 99.9 1.1E-26 3.9E-31 171.8 5.9 86 46-133 4-103 (110)
9 2zjr_R 50S ribosomal protein L 99.9 5.8E-27 2E-31 174.4 4.1 85 41-126 8-106 (115)
10 3r8s_U 50S ribosomal protein L 99.9 7E-25 2.4E-29 160.3 5.8 78 47-126 2-94 (102)
11 2ftc_N Mitochondrial ribosomal 99.9 1.2E-24 4.1E-29 157.5 6.6 75 52-126 1-88 (96)
12 1nz9_A Transcription antitermi 98.6 8.9E-08 3.1E-12 61.9 6.6 54 47-104 3-56 (58)
13 3p8b_B Transcription antitermi 98.1 5.5E-06 1.9E-10 62.3 6.5 60 46-109 89-148 (152)
14 2e6z_A Transcription elongatio 97.5 4.2E-05 1.4E-09 49.9 2.6 34 46-81 5-38 (59)
15 2jvv_A Transcription antitermi 97.4 0.00042 1.4E-08 53.1 6.9 54 46-103 125-178 (181)
16 2do3_A Transcription elongatio 97.2 0.00017 5.9E-09 49.1 2.3 27 49-75 18-44 (69)
17 2ckk_A KIN17; beta barrel, rib 96.9 0.0012 4.1E-08 49.1 4.8 33 50-82 72-104 (127)
18 2xhc_A Transcription antitermi 96.5 0.0064 2.2E-07 52.0 7.1 54 46-103 296-349 (352)
19 1m1h_A Transcription antitermi 96.0 0.0011 3.7E-08 54.3 0.0 38 45-82 191-228 (248)
20 2e70_A Transcription elongatio 94.2 0.067 2.3E-06 36.4 4.5 49 51-107 20-68 (71)
21 4a18_F RPL14; ribosome, eukary 92.9 0.21 7.2E-06 37.3 5.8 55 49-111 7-61 (126)
22 3iz5_N 60S ribosomal protein L 92.6 0.12 4.1E-06 38.9 4.2 55 49-111 7-61 (134)
23 4a18_N RPL27, ribosomal protei 92.3 0.21 7.2E-06 38.1 5.2 62 49-110 5-87 (144)
24 2joy_A 50S ribosomal protein L 90.7 0.16 5.6E-06 35.7 2.9 59 49-111 4-62 (96)
25 3izc_N 60S ribosomal protein R 89.7 0.23 7.9E-06 37.6 3.1 57 49-111 15-71 (138)
26 3j21_5 50S ribosomal protein L 87.6 0.31 1.1E-05 33.6 2.4 57 49-110 4-60 (83)
27 2xzm_W 40S ribosomal protein S 86.6 1.4 4.7E-05 36.5 6.2 56 47-109 175-233 (260)
28 2oug_A Transcriptional activat 85.0 0.00092 3.1E-08 50.0 -12.6 31 46-76 107-137 (162)
29 1qp2_A Protein (PSAE protein); 78.8 1.7 5.9E-05 29.4 3.1 38 49-86 2-45 (70)
30 1vq8_Q 50S ribosomal protein L 78.6 4.7 0.00016 28.6 5.5 63 11-82 5-77 (96)
31 3iz6_D 40S ribosomal protein S 78.2 4 0.00014 33.8 5.8 56 47-109 173-231 (265)
32 4a17_P RPL21, 60S ribosomal pr 75.7 1.7 5.8E-05 33.5 2.7 79 49-137 34-127 (157)
33 1jt8_A EIF-1A, probable transl 74.4 2.7 9.1E-05 30.0 3.3 44 28-76 43-87 (102)
34 3u5c_E RP5, S7, YS6, 40S ribos 71.5 4 0.00014 33.7 4.2 56 47-109 173-231 (261)
35 4a18_E RPL6; ribosome, eukaryo 69.9 3.8 0.00013 32.5 3.5 58 48-106 44-110 (191)
36 3j21_R 50S ribosomal protein L 69.1 6.8 0.00023 27.8 4.4 34 49-82 35-78 (97)
37 2oqk_A Putative translation in 68.1 8.2 0.00028 27.7 4.8 44 28-76 55-98 (117)
38 3r8s_P 50S ribosomal protein L 67.2 9.4 0.00032 27.8 4.9 71 36-110 5-87 (114)
39 2ftc_K 39S ribosomal protein L 66.0 20 0.00069 25.3 6.4 60 48-109 3-70 (98)
40 1d7q_A Translation initiation 64.9 5.7 0.00019 30.0 3.5 44 29-77 55-98 (143)
41 1yfb_A Transition state regula 62.9 6.9 0.00024 25.0 3.2 24 32-60 24-47 (59)
42 2zjr_M 50S ribosomal protein L 62.0 18 0.00061 28.0 5.9 74 33-110 6-95 (166)
43 3j20_E 30S ribosomal protein S 61.6 6.8 0.00023 31.9 3.6 55 47-108 177-235 (243)
44 2vc8_A Enhancer of mRNA-decapp 61.4 21 0.00071 24.8 5.6 55 51-108 8-69 (84)
45 2jz2_A SSL0352 protein; SH3-li 60.4 33 0.0011 22.7 6.2 57 48-110 1-59 (66)
46 3kbg_A 30S ribosomal protein S 58.6 8.7 0.0003 30.8 3.7 51 47-108 137-191 (213)
47 4e8b_A Ribosomal RNA small sub 57.4 16 0.00055 29.0 5.1 49 32-81 18-66 (251)
48 1jb0_E Photosystem 1 reaction 57.2 14 0.00048 25.1 4.0 37 49-85 1-44 (75)
49 2l66_A SSO7C4, transcriptional 57.0 12 0.0004 22.9 3.4 25 32-61 14-38 (53)
50 3iz5_U 60S ribosomal protein L 55.6 11 0.00036 29.2 3.6 88 32-137 25-127 (164)
51 3dcl_A TM1086; SAD, structural 54.8 15 0.00052 30.6 4.6 33 50-82 85-117 (284)
52 3iz5_G 60S ribosomal protein L 53.6 6.7 0.00023 31.7 2.2 57 48-105 74-139 (219)
53 3tee_A Flagella basal BODY P-r 53.5 21 0.00072 28.0 5.2 50 47-100 139-200 (219)
54 3izc_a 60S ribosomal protein R 53.4 0.87 3E-05 34.4 -2.8 39 49-87 5-49 (136)
55 3i4o_A Translation initiation 52.1 13 0.00046 25.1 3.3 39 29-71 38-76 (79)
56 2zkr_q 60S ribosomal protein L 50.6 4.5 0.00015 31.2 0.7 44 31-82 24-77 (160)
57 2dgy_A MGC11102 protein; EIF-1 50.6 7.9 0.00027 27.8 2.0 41 30-75 40-81 (111)
58 1zuy_A Myosin-5 isoform; SH3 d 50.5 15 0.00051 21.7 3.1 17 46-62 17-33 (58)
59 1hr0_W Translation initiation 49.9 11 0.00039 24.4 2.6 29 28-60 30-58 (71)
60 1z85_A Hypothetical protein TM 49.9 30 0.001 27.4 5.5 47 34-82 28-74 (234)
61 1at0_A 17-hedgehog; developmen 49.7 25 0.00086 25.4 4.8 17 45-61 88-104 (145)
62 2glw_A PHS018, 92AA long hypot 49.6 12 0.0004 25.8 2.7 22 33-59 63-84 (92)
63 3v2d_T 50S ribosomal protein L 49.5 27 0.00093 26.5 4.9 69 36-108 8-88 (146)
64 3izc_U 60S ribosomal protein R 49.0 9.6 0.00033 29.3 2.4 34 49-82 34-77 (160)
65 3iz5_a 60S ribosomal protein L 48.8 0.91 3.1E-05 34.3 -3.3 39 49-87 5-49 (136)
66 2vxe_A CG10686-PA; EDC3, CAR-1 48.8 33 0.0011 23.9 4.9 54 50-103 11-64 (88)
67 1vhy_A Hypothetical protein HI 46.7 25 0.00086 28.0 4.7 49 33-82 21-69 (257)
68 2ew3_A SH3-containing GRB2-lik 46.7 13 0.00044 23.4 2.4 17 46-62 19-35 (68)
69 1sem_A SEM-5; SRC-homology 3 ( 46.2 14 0.00047 21.9 2.4 16 46-61 18-33 (58)
70 3kw2_A Probable R-RNA methyltr 45.2 35 0.0012 27.3 5.3 51 31-82 16-66 (257)
71 4a4f_A SurviVal of motor neuro 44.7 47 0.0016 20.8 4.9 36 47-82 7-43 (64)
72 1zuu_A BZZ1 protein; SH3 domai 44.2 21 0.0007 21.1 3.0 17 46-62 17-33 (58)
73 2g6f_X RHO guanine nucleotide 44.1 15 0.00053 21.9 2.4 17 46-62 20-36 (59)
74 1dj7_B Ferredoxin thioredoxin 43.9 18 0.00061 24.6 2.9 25 50-74 2-40 (75)
75 2bzy_A CRK-like protein, CRKL 43.2 16 0.00054 22.6 2.4 16 46-61 19-34 (67)
76 3izc_G 60S ribosomal protein R 42.2 14 0.00049 28.8 2.5 57 48-105 33-98 (176)
77 2ege_A Uncharacterized protein 41.3 17 0.00058 23.1 2.4 14 46-59 30-43 (75)
78 1ruw_A Myosin-3 isoform, MYO3; 40.7 25 0.00085 21.6 3.1 16 46-61 19-34 (69)
79 2k52_A Uncharacterized protein 40.5 37 0.0013 21.8 4.0 25 48-82 45-69 (80)
80 1w70_A Neutrophil cytosol fact 39.7 20 0.00068 21.5 2.4 16 47-62 21-36 (60)
81 2a28_A BZZ1 protein; SH3 domai 39.7 33 0.0011 20.0 3.4 16 46-61 16-31 (54)
82 2ak5_A RHO guanine nucleotide 39.5 20 0.00068 21.7 2.4 17 46-62 22-38 (64)
83 2eyx_A V-CRK sarcoma virus CT1 39.3 20 0.00068 22.1 2.4 17 46-62 24-40 (67)
84 2yuo_A CIP85, RUN and TBC1 dom 38.3 20 0.0007 22.7 2.4 15 46-60 23-37 (78)
85 3udc_A Small-conductance mecha 38.2 24 0.00081 28.2 3.3 23 48-75 128-150 (285)
86 2x3w_D Syndapin I, protein kin 38.0 25 0.00085 20.9 2.7 15 46-60 19-33 (60)
87 2gnc_A SLIT-ROBO RHO GTPase-ac 37.8 22 0.00076 21.3 2.4 15 46-60 22-36 (60)
88 2fb7_A SM-like protein, LSM-14 37.8 24 0.00084 24.9 2.9 54 50-103 17-70 (95)
89 1ah9_A IF1, initiation factor 37.1 12 0.0004 24.3 1.1 38 28-69 29-66 (71)
90 1j3t_A Intersectin 2; beta bar 36.7 21 0.0007 22.5 2.2 15 46-60 26-40 (74)
91 1k1z_A VAV; SH3, proto-oncogen 36.6 35 0.0012 21.5 3.4 16 46-61 34-49 (78)
92 1vhk_A Hypothetical protein YQ 36.6 27 0.00091 28.0 3.3 48 34-82 23-70 (268)
93 3c0c_A Endophilin-A2; endocyto 36.4 23 0.00079 22.2 2.4 17 46-62 29-45 (73)
94 1x2k_A OSTF1, osteoclast stimu 36.2 26 0.00087 21.6 2.6 16 46-61 23-38 (68)
95 1uhc_A KIAA1010 protein; beta 35.6 26 0.0009 22.2 2.6 16 46-61 29-44 (79)
96 2iim_A Proto-oncogene tyrosine 35.4 30 0.001 20.8 2.7 15 46-60 22-36 (62)
97 1v6z_A Hypothetical protein TT 35.3 51 0.0018 25.7 4.7 47 33-82 14-60 (228)
98 2dl8_A SLIT-ROBO RHO GTPase-ac 35.3 25 0.00084 22.0 2.4 15 46-60 25-39 (72)
99 2ydl_A SH3 domain-containing k 35.2 25 0.00085 22.1 2.4 15 46-60 18-32 (69)
100 1csk_A C-SRC SH3 domain; phosp 34.9 29 0.00099 21.4 2.7 14 46-59 27-40 (71)
101 1mvf_D MAZE protein, PEMI-like 34.6 23 0.00077 23.1 2.2 25 30-59 13-37 (82)
102 3eg3_A Proto-oncogene tyrosine 34.3 27 0.00093 20.8 2.4 14 46-59 21-34 (63)
103 1gcq_C VAV proto-oncogene; SH3 33.8 43 0.0015 20.5 3.4 15 46-60 26-40 (70)
104 2epd_A RHO GTPase-activating p 33.8 27 0.00091 22.1 2.4 15 46-60 26-40 (76)
105 2lcs_A NAP1-binding protein 2; 33.3 31 0.0011 21.8 2.7 16 46-61 21-36 (73)
106 2ebp_A SAM and SH3 domain-cont 33.0 32 0.0011 21.7 2.7 17 46-62 27-43 (73)
107 2k9g_A SH3 domain-containing k 32.5 29 0.001 21.5 2.4 16 46-61 25-40 (73)
108 1w1f_A Tyrosine-protein kinase 32.3 28 0.00096 21.0 2.3 16 46-61 23-38 (65)
109 2d8h_A SH3YL1 protein; SH3 dom 32.1 45 0.0015 21.1 3.3 16 46-61 33-48 (80)
110 1yn8_A NBP2, NAP1-binding prot 31.9 29 0.00098 20.5 2.2 15 46-60 17-31 (59)
111 2ysq_A RHO guanine nucleotide 31.4 34 0.0012 21.8 2.6 16 46-61 26-41 (81)
112 2egv_A UPF0088 protein AQ_165; 31.0 35 0.0012 26.6 3.1 45 34-81 16-60 (229)
113 2w1t_A Spovt, stage V sporulat 30.7 39 0.0013 26.1 3.3 24 33-61 17-40 (178)
114 2dl7_A KIAA0769 protein; SH3 d 30.5 33 0.0011 21.3 2.4 14 47-60 25-38 (73)
115 2dmo_A Neutrophil cytosol fact 30.2 29 0.00099 21.4 2.1 15 47-61 24-38 (68)
116 2enm_A Sorting nexin-9; SH3-li 30.2 47 0.0016 20.7 3.2 16 46-61 26-41 (77)
117 1uhf_A Intersectin 2; beta bar 29.7 35 0.0012 21.1 2.4 14 46-59 24-37 (69)
118 2bz8_A SH3-domain kinase bindi 28.8 39 0.0013 19.9 2.4 17 46-62 17-33 (58)
119 2dlp_A KIAA1783 protein; SH3 d 28.8 32 0.0011 22.2 2.2 15 46-60 24-38 (85)
120 1mhn_A SurviVal motor neuron p 28.8 1E+02 0.0034 18.8 4.5 35 48-82 3-38 (59)
121 2l0a_A STAM-1, signal transduc 28.2 35 0.0012 21.7 2.3 15 46-60 33-47 (72)
122 1nm7_A Peroxisomal membrane pr 28.0 47 0.0016 21.1 2.8 16 46-61 24-39 (69)
123 3fdr_A Tudor and KH domain-con 27.9 58 0.002 21.5 3.4 48 34-82 10-61 (94)
124 1x69_A Cortactin isoform A; SH 27.6 38 0.0013 21.4 2.4 16 46-61 33-48 (79)
125 2v1r_A Peroxisomal membrane pr 27.5 45 0.0016 20.9 2.7 16 46-61 31-46 (80)
126 2qsi_A Putative hydrogenase ex 27.0 43 0.0015 24.4 2.8 27 35-61 78-108 (137)
127 2qgv_A Hydrogenase-1 operon pr 27.0 43 0.0015 24.5 2.8 27 35-61 80-110 (140)
128 2lj0_A Sorbin and SH3 domain-c 27.0 40 0.0014 21.2 2.3 19 46-64 22-40 (65)
129 2vkn_A Protein SSU81; membrane 26.9 52 0.0018 20.2 2.9 14 46-59 23-36 (70)
130 1i07_A Epidermal growth factor 26.9 38 0.0013 20.2 2.1 15 46-60 17-31 (60)
131 2khi_A 30S ribosomal protein S 26.5 71 0.0024 21.9 3.8 25 48-82 75-99 (115)
132 2jsh_A Appetite-regulating hor 26.4 12 0.00041 20.7 -0.3 21 19-44 1-21 (26)
133 2da9_A SH3-domain kinase bindi 26.3 38 0.0013 20.8 2.1 15 46-60 23-37 (70)
134 1u5s_A Cytoplasmic protein NCK 26.0 48 0.0016 20.3 2.6 15 46-60 22-36 (71)
135 2oi3_A Tyrosine-protein kinase 26.0 39 0.0013 21.6 2.2 16 46-61 41-56 (86)
136 2khj_A 30S ribosomal protein S 26.0 75 0.0026 21.5 3.8 25 48-82 75-99 (109)
137 1jqq_A PEX13P, peroxisomal mem 25.7 50 0.0017 21.4 2.7 16 46-61 31-46 (92)
138 1cka_A C-CRK N-terminal SH3 do 25.6 47 0.0016 19.4 2.4 16 46-61 17-32 (57)
139 2vv5_A MSCS, small-conductance 25.5 34 0.0012 27.3 2.2 23 48-75 129-151 (286)
140 1jo8_A ABP1P, actin binding pr 25.4 47 0.0016 19.6 2.4 16 46-61 16-31 (58)
141 2j5u_A MREC protein; bacterial 25.4 1.2E+02 0.004 24.1 5.3 33 44-77 165-202 (255)
142 1wxt_A Hypothetical protein FL 25.4 53 0.0018 20.1 2.7 15 46-60 23-37 (68)
143 3pnw_C Tudor domain-containing 25.3 1E+02 0.0036 20.1 4.3 48 28-82 4-52 (77)
144 1k4u_S Phagocyte NADPH oxidase 25.2 45 0.0015 19.9 2.3 16 46-61 21-36 (62)
145 2zzd_A Thiocyanate hydrolase s 24.7 60 0.0021 23.9 3.2 27 47-73 35-71 (126)
146 2k4k_A GSP13, general stress p 24.7 78 0.0027 22.3 3.8 25 48-82 51-75 (130)
147 1uti_A GRB2-related adaptor pr 24.4 50 0.0017 19.3 2.4 16 46-61 17-32 (58)
148 2nwm_A Vinexin; cell adhesion; 24.1 52 0.0018 20.2 2.4 17 46-62 17-33 (65)
149 1x6g_A Megakaryocyte-associate 23.8 72 0.0025 20.3 3.2 15 46-60 33-47 (81)
150 1gbq_A GRB2; complex (signal t 23.7 52 0.0018 20.5 2.4 16 46-61 25-40 (74)
151 2fpe_A C-JUN-amino-terminal ki 23.6 51 0.0018 19.6 2.3 15 47-61 20-34 (62)
152 2eqj_A Metal-response element- 23.2 1.6E+02 0.0056 19.3 4.8 36 47-82 12-47 (66)
153 2drm_A Acanthamoeba myosin IB; 23.2 57 0.0019 19.1 2.4 16 46-61 19-34 (58)
154 3rnj_A Brain-specific angiogen 23.1 63 0.0022 19.6 2.7 14 47-60 25-38 (67)
155 1uj0_A Signal transducing adap 23.0 55 0.0019 19.6 2.4 16 46-61 21-36 (62)
156 2csi_A RIM-BP2, RIM binding pr 23.0 74 0.0025 19.9 3.1 16 46-61 30-45 (76)
157 2vwf_A Growth factor receptor- 22.9 56 0.0019 19.1 2.4 16 46-61 18-33 (58)
158 1gl5_A Tyrosine-protein kinase 22.9 55 0.0019 19.9 2.4 16 46-61 18-33 (67)
159 3s6w_A Tudor domain-containing 22.9 86 0.003 18.7 3.2 34 49-82 2-36 (54)
160 1ugv_A KIAA0621, olygophrenin- 22.7 27 0.00092 21.8 0.9 14 46-59 26-39 (72)
161 2dl5_A KIAA0769 protein; SH3 d 22.7 61 0.0021 20.4 2.7 16 46-61 29-44 (78)
162 2fpf_A C-JUN-amino-terminal ki 22.6 54 0.0018 20.2 2.3 16 47-62 23-38 (71)
163 2rf0_A Mitogen-activated prote 22.6 56 0.0019 21.6 2.5 15 46-60 45-59 (89)
164 2qf4_A Cell shape determining 22.5 1.2E+02 0.0042 22.5 4.7 36 41-77 101-141 (172)
165 2j05_A RAS GTPase-activating p 22.4 56 0.0019 19.7 2.3 16 46-61 22-37 (65)
166 2oaw_A Spectrin alpha chain, b 22.4 57 0.002 19.4 2.4 16 46-61 17-32 (65)
167 3qyh_B CO-type nitrIle hydrata 22.1 60 0.0021 25.8 3.0 27 47-73 129-165 (219)
168 2v1q_A SLA1, cytoskeleton asse 22.1 47 0.0016 19.5 1.9 15 46-60 18-32 (60)
169 1y0m_A 1-phosphatidylinositol- 22.0 59 0.002 19.3 2.4 16 46-61 19-34 (61)
170 1zx6_A YPR154WP; SH3 domain, p 21.8 58 0.002 19.1 2.3 16 46-61 18-33 (58)
171 1y96_A Gemin6, SIP2, GEM-assoc 21.3 1.2E+02 0.004 20.8 4.0 34 51-84 16-49 (86)
172 1gxi_E Photosystem I reaction 21.3 30 0.001 23.4 0.8 34 49-82 2-39 (73)
173 2j6f_A CD2-associated protein; 21.3 62 0.0021 19.3 2.3 15 46-60 17-31 (62)
174 1kl9_A Eukaryotic translation 21.3 90 0.0031 23.6 3.8 25 48-82 61-85 (182)
175 1iq6_A (R)-hydratase, (R)-spec 21.3 1.3E+02 0.0043 19.9 4.2 27 48-82 87-113 (134)
176 3hht_B NitrIle hydratase beta 21.2 67 0.0023 25.7 3.1 27 47-73 140-176 (229)
177 4glm_A Dynamin-binding protein 21.2 60 0.0021 19.7 2.3 19 46-64 29-47 (72)
178 2fhd_A RAD9 homolog, DNA repai 21.2 33 0.0011 26.2 1.2 16 43-58 58-73 (153)
179 2csq_A RIM-BP2, RIM binding pr 21.1 91 0.0031 20.5 3.4 14 46-59 41-54 (97)
180 1b07_A Protein (proto-oncogene 21.1 63 0.0021 19.8 2.4 16 46-61 19-34 (65)
181 2xmf_A Myosin 1E SH3; motor pr 21.0 63 0.0021 19.1 2.3 17 46-62 21-37 (60)
182 1wx6_A Cytoplasmic protein NCK 21.0 85 0.0029 20.2 3.2 15 46-60 33-47 (91)
183 3i5r_A Phosphatidylinositol 3- 21.0 92 0.0032 19.7 3.3 14 46-59 21-34 (83)
184 2i0n_A Class VII unconventiona 20.8 72 0.0025 20.2 2.7 17 47-63 27-43 (80)
185 3sd4_A PHD finger protein 20; 20.7 1.7E+02 0.0058 18.4 5.0 36 46-81 10-45 (69)
186 4e6r_A Cytoplasmic protein NCK 20.7 65 0.0022 18.6 2.3 17 47-63 18-34 (58)
187 1v1c_A Obscurin; muscle, sarco 20.7 61 0.0021 21.6 2.3 21 43-63 20-40 (71)
188 3k67_A Putative dehydratase AF 20.6 1.3E+02 0.0043 22.0 4.3 21 48-76 115-135 (159)
189 3cqt_A P59-FYN, proto-oncogene 20.6 63 0.0022 20.6 2.4 17 46-62 21-37 (79)
190 4esr_A Jouberin; AHI-1, AHI1, 20.4 63 0.0021 19.6 2.3 17 46-62 22-38 (69)
191 2a19_A EIF-2- alpha, eukaryoti 20.3 98 0.0033 23.2 3.7 25 48-82 61-85 (175)
192 1ue9_A Intersectin 2; beta bar 20.2 60 0.0021 20.4 2.2 17 46-62 23-39 (80)
193 4drs_A Pyruvate kinase; glycol 20.2 46 0.0016 29.7 2.1 21 48-68 496-516 (526)
194 2eqm_A PHD finger protein 20-l 20.2 1.7E+02 0.0057 19.7 4.6 35 47-81 18-52 (88)
195 1zlm_A Osteoclast stimulating 20.1 69 0.0024 18.8 2.4 16 46-61 19-34 (58)
196 3ulr_B SRC substrate cortactin 20.1 68 0.0023 19.1 2.4 17 47-63 26-42 (65)
No 1
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=100.00 E-value=5.5e-58 Score=354.93 Aligned_cols=139 Identities=85% Similarity=1.257 Sum_probs=128.0
Q ss_pred CCCCCCCCCCcccccccccCCCCcccceeeeccCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEE
Q 032182 1 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIH 80 (146)
Q Consensus 1 mk~~~~~s~~~rKqRk~~~~Ap~h~r~k~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~ 80 (146)
|||||+||+|||||||++||||+|.|+++||||||+|||++||+|+|+|++||+|+||+|+|||++|+|++|++++++|+
T Consensus 1 mk~n~~vss~~rKqRK~~f~Ap~h~Rrk~msa~LSkELR~ky~vRs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~ 80 (150)
T 3iz5_Y 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRGSYKGREGKVVQVYRRRWVIH 80 (150)
T ss_dssp CCCCSSSCCCHHHHHHHHHHCCHHHHHHTTEEEECHHHHTTTTCSEEECCSSSEEEECSSTTTTCEEEEEEEETTTTEEE
T ss_pred CCcCCccCCCchHHHHHhhcCCcchhhhheeCcCCHHHHHHhCCcccccCCCCEEEEeecCCCCccceEEEEEcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeEEeeCCcEEEeeccccceEEEcCCCcchhhhhhccccccchhhhhccCCccchhcc
Q 032182 81 IERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKAKGRAAADKEKGTKFTPEDI 141 (146)
Q Consensus 81 VEgin~~K~~G~~~e~pIh~SNv~i~~~~~~~~R~~~le~~~k~~~~~~~~~~~~~~~~~~ 141 (146)
|||||+++++|+++|+|||||||+|+|++||++|.++||++++.++. ++++| +|++++.
T Consensus 81 VEGVN~~K~~G~~~eapIh~SNV~i~~~k~dk~R~~~lerk~~~~~~-~~~k~-k~~~~~~ 139 (150)
T 3iz5_Y 81 VERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGRAA-DKAKG-KFTAEDV 139 (150)
T ss_dssp ETTCEEECTTSCEEECCBCGGGEEEEECCCCSHHHHHHHHHHHHHHH-HHC----------
T ss_pred EeCcEEEeCCCCEEecccchHHEEEEcccCChHHHHHhccchhhhhh-ccccc-ccchhhh
Confidence 99999999999999999999999999999999999999999999995 78899 9999887
No 2
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=100.00 E-value=4.9e-56 Score=336.29 Aligned_cols=126 Identities=56% Similarity=0.901 Sum_probs=123.2
Q ss_pred CCCCCCCCCCcccccccccCCCCcccceeeeccCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEE
Q 032182 1 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIH 80 (146)
Q Consensus 1 mk~~~~~s~~~rKqRk~~~~Ap~h~r~k~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~ 80 (146)
|||||+||+|||||||++||||+|.|+++||||||+|||++||+|+|+|++||+|+||+|+|||++|+|++|++++++|+
T Consensus 2 ~k~~~~vss~~rKqRK~~f~Ap~h~r~k~msa~LSkeLr~ky~vrs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~ 81 (127)
T 3u5e_Y 2 AKQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQ 81 (127)
T ss_dssp CCCCSSCCCCHHHHHHHHHTCCHHHHHHHTEEEBCHHHHHHHTCCEEECCTTCEEEECSSTTTTCEEEEEEEEGGGTEEE
T ss_pred CccCCccCCCchhhHHHhhcCCcchhhhheeCcCCHHHHHHhCcCcccccCCCEEEEeecCCCCccceEEEEECCCCEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeEEeeCCcEEEeeccccceEEEcCCCcchhhhhhccccccch
Q 032182 81 IERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKAKGRA 126 (146)
Q Consensus 81 VEgin~~K~~G~~~e~pIh~SNv~i~~~~~~~~R~~~le~~~k~~~ 126 (146)
|||||+++++|+++|+|||||||+|+|++||++|.++||+++++++
T Consensus 82 VEgVn~~K~~G~~~e~pIh~SNV~i~~~~~dk~R~~~lerk~~~~~ 127 (127)
T 3u5e_Y 82 VDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRKGGKLE 127 (127)
T ss_dssp EETCEEECSSSCEEECCBCGGGEEEEECCCCHHHHHHHHHTTCCCC
T ss_pred EeCeEEECCCCcEEEcccchHHEEEEccccCcHHHHHhhhhhhcCC
Confidence 9999999999999999999999999999999999999999887653
No 3
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=100.00 E-value=1.1e-55 Score=337.16 Aligned_cols=125 Identities=61% Similarity=0.964 Sum_probs=122.5
Q ss_pred CCCCCCCCCCcccccccccCCCCcccceeeeccCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEE
Q 032182 1 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIH 80 (146)
Q Consensus 1 mk~~~~~s~~~rKqRk~~~~Ap~h~r~k~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~ 80 (146)
|||||+||+|||||||++||||+|.|+++||||||+|||++||+|+|+|++||+|+||+|+|||++|+|++|++++++|+
T Consensus 1 mk~n~~vss~~rKqRK~~f~Ap~h~rrk~msa~LSkeLr~ky~vRs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~ 80 (135)
T 4a17_S 1 MKTHVEVSSARRKQRKAHFASPSHLRQTLMSAHLSKDLRSKYNVRSMPVRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIH 80 (135)
T ss_dssp -CCCTTSCCCHHHHHHHHHTCCHHHHHHHSEEEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEE
T ss_pred CCcCCccCCCchhhHHHhhcCCcchhhheeeCcCCHHHHHHhCCCcccccCCCEEEEeecCCCCceeeEEEEEcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeEEeeCCcEEEeeccccceEEEcCCCcchhhhhhccccccc
Q 032182 81 IERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKAKGR 125 (146)
Q Consensus 81 VEgin~~K~~G~~~e~pIh~SNv~i~~~~~~~~R~~~le~~~k~~ 125 (146)
|||||+++++|+++|+|||||||+|+|++||++|.++||++++++
T Consensus 81 VEgVn~~K~~G~~~e~pIh~SNV~i~~~k~dk~R~~~lerk~~~~ 125 (135)
T 4a17_S 81 VEKISKNKLNGAPYQIPLSASQLVLTKLKLDKSRQSLLTRKAASL 125 (135)
T ss_dssp ETTCCEEETTTEEECCCBCGGGEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EeCeEEEcCCCCEEEcccchHHEEEEcccCCcHHHHHhhhhcccc
Confidence 999999999999999999999999999999999999999998877
No 4
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.7e-51 Score=316.27 Aligned_cols=139 Identities=71% Similarity=1.100 Sum_probs=106.0
Q ss_pred CCCCCCCCCCcccccccccCCCCcccceeeeccCCHHHHhhhCCcccceecCCEEEEeecCCCCeE-eeEEEEEecCCEE
Q 032182 1 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVI 79 (146)
Q Consensus 1 mk~~~~~s~~~rKqRk~~~~Ap~h~r~k~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~-GkV~~V~~k~~~V 79 (146)
||||+.+|+|||||||++|+||+|+|+++|+|+||+|||++||+|+|+|++||+|+||+|+|||++ |+|++|++++++|
T Consensus 1 mk~~~~~s~~~rKqRk~~~~Ap~h~Rrk~msa~LSkelr~ky~vr~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V 80 (145)
T 2zkr_t 1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVI 80 (145)
T ss_dssp -------CCCHHHHHHHHHTCCHHHHGGGGBC-CCHHHHHC-CC-CCBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEE
T ss_pred CCccccccCCchHhHHHHhcCcHHHHHHHHhcccChhHHhhcCccccccCCCCEEEEeecCCCCcceeEEEEEECCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEeeeeEEeeCCcEEEeeccccceEEEcCCCcchhhhhhccccccchhhhhccCCccchhcc
Q 032182 80 HIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKAKGRAAADKEKGTKFTPEDI 141 (146)
Q Consensus 80 ~VEgin~~K~~G~~~e~pIh~SNv~i~~~~~~~~R~~~le~~~k~~~~~~~~~~~~~~~~~~ 141 (146)
+|||||+.+++|.++|+|||+|||+|+|++|++.+..+||+++++++ ..+.+| ++++++.
T Consensus 81 ~VEgvn~~Kp~G~~~e~PIh~SNV~lv~~~~~k~~k~~le~k~~~r~-~~~~k~-~~~~~~~ 140 (145)
T 2zkr_t 81 YIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQ-VGKEKG-KYKEETI 140 (145)
T ss_dssp EETTCEEECSSCCEEECCBCGGGEEECC-CCCHHHHHHHHC---------------------
T ss_pred EEeeeEeEcCCCceEEeccCHHHEEEEcCcCCchHHHHhhcccccch-hhhccc-ccchhhh
Confidence 99999999999999999999999999999997555688999999888 345677 6776653
No 5
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-49 Score=299.00 Aligned_cols=116 Identities=49% Similarity=0.776 Sum_probs=113.4
Q ss_pred CCCCcccccccccCCCCcccceeeeccCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeE
Q 032182 7 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITR 86 (146)
Q Consensus 7 ~s~~~rKqRk~~~~Ap~h~r~k~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~ 86 (146)
.|+|||||||++||||+|.|+++||||||+|||++||+|+|+|++||+|+||+|+|||++|+|++|++++++|+|||||+
T Consensus 4 ~s~~~rK~Rk~~f~Ap~h~r~k~msa~LSkeLR~ky~~r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEgvn~ 83 (121)
T 3j21_U 4 SSKQPRKQRKFLYNAPLHVRQKLMSAPLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATL 83 (121)
T ss_dssp CCCCHHHHHHHHHHCCTTGGGGGSEEEBCHHHHHHTCCSEEECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETTCEE
T ss_pred ccCCchhhHHHhhcCCcchhhhhhcCcCCHHHHHHhCCcccccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeCeEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCcEEEeeccccceEEEcCCC-cchhhhhhcccc
Q 032182 87 EKVNGSTVNVGINPSKVVITKLRL-DKDRKSLLDRKA 122 (146)
Q Consensus 87 ~K~~G~~~e~pIh~SNv~i~~~~~-~~~R~~~le~~~ 122 (146)
++.+|.++|+|||+|||+|+|+++ +++|.++||+++
T Consensus 84 ~k~~G~~~e~pIh~SNV~l~~~~~~d~~R~~~lerk~ 120 (121)
T 3j21_U 84 RKTNGTEVFYPIHPSNVMIIELNLEDEKRKKIIERRA 120 (121)
T ss_dssp ECSSSCEEECCBCGGGEEEEECCCCCHHHHHHHHTTT
T ss_pred EecCCcEEEcccCHHHeEEEcCccCCcHHHHHhhhcc
Confidence 999999999999999999999999 899999999874
No 6
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=100.00 E-value=5.5e-49 Score=295.27 Aligned_cols=118 Identities=37% Similarity=0.563 Sum_probs=113.2
Q ss_pred CCCCcccccccccCCCCcccceeeeccCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeE
Q 032182 7 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITR 86 (146)
Q Consensus 7 ~s~~~rKqRk~~~~Ap~h~r~k~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~ 86 (146)
||+|||||||++||||+|.|+++|+||||+|||++||+|+|+|++||+|+||+|+|||++|+|++|++++++|+|||||+
T Consensus 1 ~s~~~rK~Rk~~~~Ap~h~rrk~msa~LskeLr~ky~vr~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgvn~ 80 (120)
T 1vq8_T 1 MSKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTL 80 (120)
T ss_dssp -CCCHHHHHHHHHTCCGGGSGGGGEEEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEE
T ss_pred CCCCcchhhHHhhcCCcchhhheeeCcCCHHHHHhhccccccccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCeEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCcEEEeeccccceEEEcCCC-cchhhhhhcccccc
Q 032182 87 EKVNGSTVNVGINPSKVVITKLRL-DKDRKSLLDRKAKG 124 (146)
Q Consensus 87 ~K~~G~~~e~pIh~SNv~i~~~~~-~~~R~~~le~~~k~ 124 (146)
.+++|+++|+|||+|||+|+|++| +++|..+||++++.
T Consensus 81 kK~~Gg~~e~pIh~SNV~i~~~~~~k~~Rv~~l~rk~~~ 119 (120)
T 1vq8_T 81 EKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDS 119 (120)
T ss_dssp ECSSSCEEECCBCGGGEEEEECCCCCHHHHHHHHCSSCC
T ss_pred EcCCCCEEEeeechHHEEEEeccCCCchhheehhccccC
Confidence 888999999999999999999999 58999999987653
No 7
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.95 E-value=5e-30 Score=204.91 Aligned_cols=120 Identities=20% Similarity=0.272 Sum_probs=73.7
Q ss_pred ccccccccCCCCc-----ccceeeeccCCHHHHhhhCCcccc------eecCCEEEEeecCCCCeEeeEEEEEecCCEEE
Q 032182 12 RKNRKAHFTAPSS-----VRRILMSAPLSTDLRQKYNVRSMP------VRKDDEVQVVRGTYKGREGKVVQVYRRKWVIH 80 (146)
Q Consensus 12 rKqRk~~~~Ap~h-----~r~k~msa~Ls~eLr~ky~~rs~~------IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~ 80 (146)
=.||.+.+..|.. ...=.+.++|+++||++|++|++| |++||+|+||+|+|||++|+|++|++++++|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lr~k~~~rslP~~~kmkIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rVi 100 (191)
T 3bbo_W 21 LGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVI 100 (191)
T ss_dssp ------------------------------------------CTTSCCSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCC
T ss_pred cCcccCCCccccCcccccCCceeeEecccHHHHHHhCCCCCCccccCeeecCCEEEEeecCCCCceEEEEEEECCCCEEE
Confidence 4566655443222 122236889999999999999998 99999999999999999999999999999999
Q ss_pred EeeeeEEee---------CCc--EEEeeccccceEEEcCCC-cchh--hhhhccccccchhhhhccC
Q 032182 81 IERITREKV---------NGS--TVNVGINPSKVVITKLRL-DKDR--KSLLDRKAKGRAAADKEKG 133 (146)
Q Consensus 81 VEgin~~K~---------~G~--~~e~pIh~SNv~i~~~~~-~~~R--~~~le~~~k~~~~~~~~~~ 133 (146)
|||||+++. +|+ ++|+|||+|||+|+|+++ .++| ++++|+|+++|- .+.-|
T Consensus 101 VEGVN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~Lvdp~~gkptRVg~k~~edGkKVRv--~KksG 165 (191)
T 3bbo_W 101 IKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVRY--LIKTG 165 (191)
T ss_dssp CSSCCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEECSSSSCCCCCCCCCSSSCCCCCSS--SCCSS
T ss_pred EeCCEEEEEecCCcccCCCCCEEEEecCcCHHHeEEEeccCCCceEEEEEEccCCcEEEE--EecCC
Confidence 999999862 476 459999999999999999 6999 777888888876 44444
No 8
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=99.93 E-value=1.1e-26 Score=171.77 Aligned_cols=86 Identities=33% Similarity=0.423 Sum_probs=77.2
Q ss_pred ccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEe---------eCCc--EEEeeccccceEEEcCCC-cch
Q 032182 46 SMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREK---------VNGS--TVNVGINPSKVVITKLRL-DKD 113 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K---------~~G~--~~e~pIh~SNv~i~~~~~-~~~ 113 (146)
+|+|++||+|+||+|+|||++|+|++|++++++|+|||||+++ ++|+ ++|+|||+|||+|+|+++ .++
T Consensus 4 k~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~t 83 (110)
T 3v2d_Y 4 KMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPT 83 (110)
T ss_dssp CCSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEBCTTTCSBC
T ss_pred ccccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEEcCcCCCcc
Confidence 5899999999999999999999999999999999999999986 2464 679999999999999999 699
Q ss_pred h--hhhhccccccchhhhhccC
Q 032182 114 R--KSLLDRKAKGRAAADKEKG 133 (146)
Q Consensus 114 R--~~~le~~~k~~~~~~~~~~ 133 (146)
| ++++|+|.++|- .+.-|
T Consensus 84 Rvg~~~~edG~kvRv--~kk~g 103 (110)
T 3v2d_Y 84 RVRKKFLENGKKIRV--CAKCG 103 (110)
T ss_dssp CEEEEECSSCCEEEE--ESSSC
T ss_pred EEEEEECCCCcEEEE--EecCC
Confidence 9 788899999886 44555
No 9
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=99.93 E-value=5.8e-27 Score=174.37 Aligned_cols=85 Identities=24% Similarity=0.323 Sum_probs=76.9
Q ss_pred hhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEe----e-----CCc--EEEeeccccceEEEcCC
Q 032182 41 KYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREK----V-----NGS--TVNVGINPSKVVITKLR 109 (146)
Q Consensus 41 ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K----~-----~G~--~~e~pIh~SNv~i~~~~ 109 (146)
+|++++|+|++||+|+||+|+|||++|+|++|++++++|+|||||+++ + +|+ ++|+|||+|||+|+|++
T Consensus 8 ~~~~rkm~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv~p~ 87 (115)
T 2zjr_R 8 SHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPE 87 (115)
T ss_dssp TTTTSCCSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSSS
T ss_pred cccceeCcccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEEecc
Confidence 689999999999999999999999999999999999999999999995 2 254 57999999999999999
Q ss_pred C-cchh--hhhhccccccch
Q 032182 110 L-DKDR--KSLLDRKAKGRA 126 (146)
Q Consensus 110 ~-~~~R--~~~le~~~k~~~ 126 (146)
+ .++| +++ |+|.++|-
T Consensus 88 ~~k~tRvg~~~-~dG~kvR~ 106 (115)
T 2zjr_R 88 TGKATRVRKQI-VDGKKVRV 106 (115)
T ss_dssp SBCCCCCCCCC-SCTTSCCC
T ss_pred CCCceEEEEEE-cCCCEEEE
Confidence 9 6899 665 78888876
No 10
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=99.91 E-value=7e-25 Score=160.26 Aligned_cols=78 Identities=32% Similarity=0.392 Sum_probs=70.0
Q ss_pred cceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEeeC----------Cc--EEEeeccccceEEEcCCC-cch
Q 032182 47 MPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVN----------GS--TVNVGINPSKVVITKLRL-DKD 113 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K~~----------G~--~~e~pIh~SNv~i~~~~~-~~~ 113 (146)
.+|++||+|+||+|+|||++|+|++|+++ ++|+|||||+++.+ |+ +.|+|||+|||+|+|+++ .++
T Consensus 2 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVeGvN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~t 80 (102)
T 3r8s_U 2 AKIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKAD 80 (102)
T ss_dssp CSSCSSCEEEECSSSSTTCEEEEEEEETT-TEEEETTCSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEEEETTTTEEE
T ss_pred CCccCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEeCeEEEEeccccCcccCCCCCEEEEECCcCHHHEEEEcCcCCCce
Confidence 47999999999999999999999999999 99999999999631 43 469999999999999999 699
Q ss_pred h--hhhhccccccch
Q 032182 114 R--KSLLDRKAKGRA 126 (146)
Q Consensus 114 R--~~~le~~~k~~~ 126 (146)
| ++ +|+++++|-
T Consensus 81 rvg~~-~edG~kvRv 94 (102)
T 3r8s_U 81 RVGFR-FEDGKKVRF 94 (102)
T ss_dssp CEEEE-EETTEEEEE
T ss_pred EEEEE-eCCCeEEEE
Confidence 9 66 799998876
No 11
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=99.90 E-value=1.2e-24 Score=157.51 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=68.6
Q ss_pred CCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEe----eC----Cc--EEEeeccccceEEEcCCC-cchh--hhhh
Q 032182 52 DDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREK----VN----GS--TVNVGINPSKVVITKLRL-DKDR--KSLL 118 (146)
Q Consensus 52 GD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K----~~----G~--~~e~pIh~SNv~i~~~~~-~~~R--~~~l 118 (146)
||+|+||+|+|||++|+|++|++++++|+|||||+++ ++ |+ ++|+|||+|||||+|+++ .++| ++++
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeGvN~~kkh~kp~~~~~Ggiv~~e~pIh~SNV~lv~p~~~k~tRvg~~~~ 80 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFT 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCCEEEEEEcCCCCCCCCCEEEEecCcCHHHEEEEeCcCCCceEEEEEEc
Confidence 8999999999999999999999999999999999986 43 77 459999999999999999 6999 7778
Q ss_pred ccccccch
Q 032182 119 DRKAKGRA 126 (146)
Q Consensus 119 e~~~k~~~ 126 (146)
|+++++|-
T Consensus 81 ~dg~kvR~ 88 (96)
T 2ftc_N 81 EAGERVRV 88 (96)
T ss_pred cCCcEEEE
Confidence 89988876
No 12
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=98.63 E-value=8.9e-08 Score=61.89 Aligned_cols=54 Identities=24% Similarity=0.414 Sum_probs=46.7
Q ss_pred cceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEeeCCcEEEeeccccceE
Q 032182 47 MPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVV 104 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K~~G~~~e~pIh~SNv~ 104 (146)
+.+..||.|.|++|+|+|..|.|.+++++++++.|. ..--|...+++|+.++|.
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~----v~~~Gr~t~v~l~~~~ve 56 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVM----VTIFGRETPVELDFSQVV 56 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE----EESSSSEEEEEECGGGEE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEE----EEeCCCEEEEEECHHHEE
Confidence 568899999999999999999999999998888886 334588888889888874
No 13
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=98.11 E-value=5.5e-06 Score=62.26 Aligned_cols=60 Identities=23% Similarity=0.263 Sum_probs=52.4
Q ss_pred ccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEeeCCcEEEeeccccceEEEcCC
Q 032182 46 SMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLR 109 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K~~G~~~e~pIh~SNv~i~~~~ 109 (146)
+..+..||.|.|++|+|+|-.|.|.+|+..+.++.|+-. .-|...++.|++|+|..++..
T Consensus 89 ~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~----~~gr~tpvel~~~~v~~i~~~ 148 (152)
T 3p8b_B 89 VSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFI----DAIVPIPVTIKGDYVRLISKL 148 (152)
T ss_dssp TTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEES----SCSSCCEEEEEGGGEEEEECC
T ss_pred cccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEE----ecceeEEEEECHHHEEEeccc
Confidence 457899999999999999999999999999999988733 337788899999999988764
No 14
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.54 E-value=4.2e-05 Score=49.93 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=29.6
Q ss_pred ccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEE
Q 032182 46 SMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHI 81 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~V 81 (146)
+..+.+||.|+|+.|+++|-.|+|.+|+.+ +|.|
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~G~V~evd~e--~v~V 38 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQGKILSVDGN--KITI 38 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCEEEECCCBTT--EEEE
T ss_pred cccCCCCCEEEEeecCCCCCEEEEEEEeCC--EEEE
Confidence 456899999999999999999999999985 5444
No 15
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=97.38 E-value=0.00042 Score=53.10 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=40.9
Q ss_pred ccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEeeCCcEEEeeccccce
Q 032182 46 SMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKV 103 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K~~G~~~e~pIh~SNv 103 (146)
...+..||.|.|+.|+|+|..|.|.+|+..++++.|. | .-=|...++-+..+.|
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~-v---~ifgr~t~vel~~~qv 178 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS-V---SIFGRATPVELDFSQV 178 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEE-E---EETTEEEEEEECTTTE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE-E---EECCCCEEEEECHHHE
Confidence 4578899999999999999999999999988887664 1 1235555555555544
No 16
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=97.16 E-value=0.00017 Score=49.07 Aligned_cols=27 Identities=30% Similarity=0.620 Sum_probs=25.2
Q ss_pred eecCCEEEEeecCCCCeEeeEEEEEec
Q 032182 49 VRKDDEVQVVRGTYKGREGKVVQVYRR 75 (146)
Q Consensus 49 IkkGD~V~Vi~G~~KGk~GkV~~V~~k 75 (146)
++.||-|.||+|.+.|..|-|++|+..
T Consensus 18 F~~GDHVkVi~G~~~getGlVV~v~~d 44 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDTGLIVRVEEN 44 (69)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEECSS
T ss_pred ccCCCeEEEeccEEcCceEEEEEEeCC
Confidence 699999999999999999999999843
No 17
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=96.87 E-value=0.0012 Score=49.11 Aligned_cols=33 Identities=21% Similarity=0.492 Sum_probs=31.5
Q ss_pred ecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 50 RKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 50 kkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
++||.|.|+.|.++|..|++++++.+++.++|+
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~ 104 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESINEKTFSATIV 104 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred CCCCEEEEEecccCCcEEEEEEEeCCCcEEEEE
Confidence 799999999999999999999999998888887
No 18
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=96.46 E-value=0.0064 Score=51.96 Aligned_cols=54 Identities=15% Similarity=0.354 Sum_probs=40.0
Q ss_pred ccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEeeCCcEEEeeccccce
Q 032182 46 SMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKV 103 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K~~G~~~e~pIh~SNv 103 (146)
...+..||.|.|+.|+|+|..|.|.+|+..++++.|. + .-=|...++-+..+.|
T Consensus 296 ~~~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~-V---~ifGR~tpVeL~~~qV 349 (352)
T 2xhc_A 296 ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVN-V---TIFGRETPVVLHVSEV 349 (352)
T ss_dssp -CCCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEE-E---EETTEEEEEEEEGGGE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEE-E---EECCCcEEEEEchHHE
Confidence 3467899999999999999999999999988887774 2 2225554444444444
No 19
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=96.02 E-value=0.0011 Score=54.26 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=0.0
Q ss_pred cccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 45 RSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 45 rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
..+.+..||.|.|++|+|.|..|.|.+|+++++++.|.
T Consensus 191 ~~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~ 228 (248)
T 1m1h_A 191 SKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVM 228 (248)
T ss_dssp --------------------------------------
T ss_pred ccccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 46678999999999999999999999999988877664
No 20
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.21 E-value=0.067 Score=36.38 Aligned_cols=49 Identities=16% Similarity=0.374 Sum_probs=35.8
Q ss_pred cCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEeeCCcEEEeeccccceEEEc
Q 032182 51 KDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITK 107 (146)
Q Consensus 51 kGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K~~G~~~e~pIh~SNv~i~~ 107 (146)
.|-+|.|..|+|||..|.|..+... .+.|| + +.....+.++-+++.+++
T Consensus 20 iGktV~I~kGpyKG~~GiVkd~t~~--~~RVE-L-----hs~~K~VtV~r~~l~~~~ 68 (71)
T 2e70_A 20 IGQTVRISQGPYKGYIGVVKDATES--TARVE-L-----HSTCQTISVDRQRLTTVG 68 (71)
T ss_dssp TTSEEEECSSTTTTCEEEEEEECSS--CEEEE-E-----SSSCCEEEECTTTEEECC
T ss_pred CCCEEEEeccCCCCeEEEEEECCCC--eEEEE-e-----cCCceEEEEEhhhccccC
Confidence 5789999999999999999998764 56776 1 123345556667776554
No 21
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=92.93 E-value=0.21 Score=37.27 Aligned_cols=55 Identities=25% Similarity=0.290 Sum_probs=45.5
Q ss_pred eecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEeeCCcEEEeeccccceEEEcCCCc
Q 032182 49 VRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLD 111 (146)
Q Consensus 49 IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K~~G~~~e~pIh~SNv~i~~~~~~ 111 (146)
|..|=.|.|..|+|.|+...|+.|.-. ++|.|+|.. -.--.|..+.+++|+..++
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~-nrvLVdGp~-------V~Rq~~n~k~l~LT~~~v~ 61 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ-NRILIDGEH-------IVRQVIPIRRVHLTKFQID 61 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT-TEEEEEETT-------EEEEEEEGGGEEEEEEECT
T ss_pred eecceEEEEccCCccCCEEEEEEEecC-CeEEEeCCC-------cccceeeccceEEcceecc
Confidence 788999999999999999999999875 699999864 1113678889999988764
No 22
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=92.64 E-value=0.12 Score=38.91 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=44.7
Q ss_pred eecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEeeCCcEEEeeccccceEEEcCCCc
Q 032182 49 VRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLD 111 (146)
Q Consensus 49 IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K~~G~~~e~pIh~SNv~i~~~~~~ 111 (146)
+..|-.|.|.+|+|.|+...|++|.-. ++|.|+|..+. --.+.+..+++++..++
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD~-~rvLVdG~~v~-------Rk~~n~khL~lT~~~v~ 61 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVDQ-NRALVDAPDMV-------RCQINFKRLSLTDIKID 61 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECSS-SEEEEEETTEE-------EEEEECTTSEEEEEECC
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcCC-CeEEEeCCCcc-------ceeechhHeEEeCEEEe
Confidence 789999999999999999999999875 69999987411 13677888888877653
No 23
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=92.29 E-value=0.21 Score=38.09 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=46.2
Q ss_pred eecCCEEEEeecCCCCeEeeEEEEEecC------CEEEEeeeeEEe--eCC---c----------EEEeeccccceEEEc
Q 032182 49 VRKDDEVQVVRGTYKGREGKVVQVYRRK------WVIHIERITREK--VNG---S----------TVNVGINPSKVVITK 107 (146)
Q Consensus 49 IkkGD~V~Vi~G~~KGk~GkV~~V~~k~------~~V~VEgin~~K--~~G---~----------~~e~pIh~SNv~i~~ 107 (146)
+++|-.|.|++|.+.|+...|+++..+. +.+.|.||..-- -++ . ..---++++-|+.|.
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl~pTr 84 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMPTR 84 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGEEEEE
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeEEEee
Confidence 6889999999999999999999998764 799999986542 122 1 112246777788776
Q ss_pred CCC
Q 032182 108 LRL 110 (146)
Q Consensus 108 ~~~ 110 (146)
-.+
T Consensus 85 y~v 87 (144)
T 4a18_N 85 YSV 87 (144)
T ss_dssp EEC
T ss_pred EEe
Confidence 655
No 24
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=90.66 E-value=0.16 Score=35.73 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=42.4
Q ss_pred eecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEeeCCcEEEeeccccceEEEcCCCc
Q 032182 49 VRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLD 111 (146)
Q Consensus 49 IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K~~G~~~e~pIh~SNv~i~~~~~~ 111 (146)
+..|-.|.+.+|.|+|+.-.|+++.- .+.|+|.|.... ++ ...--++...|++++...+
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~iD-~~~vLV~gp~~~--~~-~~rk~~n~khl~~T~~~vd 62 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDIID-DNFVLVTGPKDI--TG-VKRRRVNILHLEPTDKKID 62 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEECS-SSCEEEECCTTT--TC-CCCEEESCSSCEEEEEECC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEeC-CCEEEEECCccc--CC-cCCEEEchHHEEEeeEEEe
Confidence 67899999999999999999999974 568999876211 11 1224566667777665543
No 25
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=89.69 E-value=0.23 Score=37.56 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=45.1
Q ss_pred eecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEeeCCcEEEeeccccceEEEcCCCc
Q 032182 49 VRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLD 111 (146)
Q Consensus 49 IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K~~G~~~e~pIh~SNv~i~~~~~~ 111 (146)
+..|-.|.|.+|+|.|+...|++|.-. ++|.|+|-. .|-.. -.+.+..|++++...+
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD~-~rVLVDGp~----~gV~R-~~~n~khL~lT~~~v~ 71 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIIDQ-KKVLIDGPK----AGVPR-QAINLGQVVLTPLTFA 71 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECSS-SEEEEECSS----SSCCC-EEEECSSSEEEEEECC
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEecC-CEEEEEcCC----CCccc-ceechhHeEEecEEEE
Confidence 789999999999999999999999875 799999873 23221 2477888888887653
No 26
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=87.58 E-value=0.31 Score=33.62 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=42.8
Q ss_pred eecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEeeCCcEEEeeccccceEEEcCCC
Q 032182 49 VRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRL 110 (146)
Q Consensus 49 IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K~~G~~~e~pIh~SNv~i~~~~~ 110 (146)
+..|-.|.+.+|.|+|+...|+++.-. ++|+|.|... .|- ..-.+....|.+++..+
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD~-~~vlV~g~~~---~~v-~rk~kn~khl~lt~~~i 60 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIIDK-NFVLVTGAGL---NKV-KRRRMNIKHIEPLPQKI 60 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECSS-SCEEEECCTT---TTC-CCEEESCSSCEEEEEEC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcCC-CEEEEECCcc---Ccc-CCeEechHHEEEeeEEE
Confidence 678999999999999999999998664 6899987621 222 24456677777777655
No 27
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=86.62 E-value=1.4 Score=36.46 Aligned_cols=56 Identities=11% Similarity=0.290 Sum_probs=42.9
Q ss_pred cceecCCEEEEeecCCCCeEeeEEEEEecC---CEEEEeeeeEEeeCCcEEEeeccccceEEEcCC
Q 032182 47 MPVRKDDEVQVVRGTYKGREGKVVQVYRRK---WVIHIERITREKVNGSTVNVGINPSKVVITKLR 109 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~---~~V~VEgin~~K~~G~~~e~pIh~SNv~i~~~~ 109 (146)
+++..|..+.|+.|..-|..|+|..+.... +.|.|+ .++|..++-.+ |||+++...
T Consensus 175 ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vk-----d~~g~~F~T~~--~~vfvIG~~ 233 (260)
T 2xzm_W 175 AHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVK-----DAKGNAFATRL--GNIFVLGQG 233 (260)
T ss_dssp CBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEE-----CTTCCCEEEEG--GGEEEEEST
T ss_pred EEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEE-----eCCCCeEEEEE--eeEEEECCC
Confidence 678999999999999999999999876553 346665 34676665554 999887653
No 28
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=85.03 E-value=0.00092 Score=50.05 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=21.7
Q ss_pred ccceecCCEEEEeecCCCCeEeeEEEEEecC
Q 032182 46 SMPVRKDDEVQVVRGTYKGREGKVVQVYRRK 76 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~ 76 (146)
...+..||.|.|+.|+|+|..|.|.+++.++
T Consensus 107 ~~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k 137 (162)
T 2oug_A 107 PATPYPGDKVIITEGAFEGFQAIFTEPDGEA 137 (162)
T ss_dssp --------CTTHHHHHHHHHHHHTTCSSHHH
T ss_pred cCCCCCCCEEEEcccCCCCcEEEEEEECCCC
Confidence 3457899999999999999999999998765
No 29
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=78.75 E-value=1.7 Score=29.36 Aligned_cols=38 Identities=18% Similarity=0.390 Sum_probs=30.4
Q ss_pred eecCCEEEEeecC--CCCeEeeEEEEEecC----CEEEEeeeeE
Q 032182 49 VRKDDEVQVVRGT--YKGREGKVVQVYRRK----WVIHIERITR 86 (146)
Q Consensus 49 IkkGD~V~Vi~G~--~KGk~GkV~~V~~k~----~~V~VEgin~ 86 (146)
|.+|+.|.|++=. +-+..|.|..|+... --|..|++|-
T Consensus 2 i~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy 45 (70)
T 1qp2_A 2 VQRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNY 45 (70)
T ss_dssp CCTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCS
T ss_pred cCCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEeccccc
Confidence 7899999999865 568899999999975 3466676665
No 30
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=78.63 E-value=4.7 Score=28.61 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=39.3
Q ss_pred cccccccccCCCCcccceeeeccCCHHHHhhhCCcccceecCCEEEEee------c----CCCCeEeeEEEEEecCCEEE
Q 032182 11 RRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVR------G----TYKGREGKVVQVYRRKWVIH 80 (146)
Q Consensus 11 ~rKqRk~~~~Ap~h~r~k~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~------G----~~KGk~GkV~~V~~k~~~V~ 80 (146)
..+.+..++.-....|.+- ..|||.-|+ . .++||.|-|.- | .|-|++|.|..|.....-|+
T Consensus 5 ~G~R~~TR~~fsr~fR~~G-~~pls~~m~-~-------yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~ 75 (96)
T 1vq8_Q 5 NGPLEGTRGKLKNKPRDRG-TSPPQRAVE-E-------FDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVD 75 (96)
T ss_dssp CSTTTTCTTTTSCCGGGCS-SCCSHHHHC-C-------CCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEE
T ss_pred CCccccchHhhCCCccccC-CCCHHHHHH-H-------cCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEE
Confidence 3333443333333333333 457886653 2 48999998863 3 26799999999988766666
Q ss_pred Ee
Q 032182 81 IE 82 (146)
Q Consensus 81 VE 82 (146)
|.
T Consensus 76 Vn 77 (96)
T 1vq8_Q 76 IV 77 (96)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 31
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=78.21 E-value=4 Score=33.76 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=43.3
Q ss_pred cceecCCEEEEeecCCCCeEeeEEEEEecCC---EEEEeeeeEEeeCCcEEEeeccccceEEEcCC
Q 032182 47 MPVRKDDEVQVVRGTYKGREGKVVQVYRRKW---VIHIERITREKVNGSTVNVGINPSKVVITKLR 109 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~---~V~VEgin~~K~~G~~~e~pIh~SNv~i~~~~ 109 (146)
+++..|..+.|+.|..-|..|+|..+.+..+ .|.|+ .++|.. +--..|||+++...
T Consensus 173 ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vk-----d~~g~~--F~T~~~nvfvIGk~ 231 (265)
T 3iz6_D 173 IKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVE-----DALGHQ--FATRLGNVFTIGKG 231 (265)
T ss_dssp ECCSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEEC-----CCSSCC--EEEEGGGEEEEECS
T ss_pred EEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEE-----ECCCCe--EEEEeCeEEEEccC
Confidence 6888999999999999999999999987543 45555 345653 44567889888764
No 32
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=75.68 E-value=1.7 Score=33.49 Aligned_cols=79 Identities=22% Similarity=0.372 Sum_probs=43.4
Q ss_pred eecCCEEEEee-c---------CCCCeEeeEEEEEecCCEEEEeeeeEEeeC-CcE--EEeeccccceEEEcCCCcchhh
Q 032182 49 VRKDDEVQVVR-G---------TYKGREGKVVQVYRRKWVIHIERITREKVN-GST--VNVGINPSKVVITKLRLDKDRK 115 (146)
Q Consensus 49 IkkGD~V~Vi~-G---------~~KGk~GkV~~V~~k~~~V~VEgin~~K~~-G~~--~e~pIh~SNv~i~~~~~~~~R~ 115 (146)
.++||.|-|.- | .|-|++|.|..|....--|+|. +.. |.. ...-+++..| .-...|.
T Consensus 34 yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVn-----k~v~gkil~KrI~VriEHi-----k~sk~r~ 103 (157)
T 4a17_P 34 YKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVH-----RIVNGRYIEKRLHVKIEHV-----RPSNVKT 103 (157)
T ss_dssp CCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEE-----EEETTEEEEEEEEEEGGGE-----EECHHHH
T ss_pred hcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEE-----EeECCEeeeeEEEEeHHHc-----cccccHH
Confidence 48999998852 2 2679999999997765445554 222 332 2332333333 2235566
Q ss_pred hhhccccccch--hhhhccCCccc
Q 032182 116 SLLDRKAKGRA--AADKEKGTKFT 137 (146)
Q Consensus 116 ~~le~~~k~~~--~~~~~~~~~~~ 137 (146)
.+|.+-++--+ +..+++|+..+
T Consensus 104 ~flkrvkend~~kkeak~kg~~v~ 127 (157)
T 4a17_P 104 ALSKRYQANDQAKAEGNKAGKRVS 127 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhHHHHHHHHhcCCccc
Confidence 66655432211 12467775443
No 33
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=74.35 E-value=2.7 Score=29.98 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=34.7
Q ss_pred eeeeccCCHHHHhhhCCcccceecCCEEEEeecCCC-CeEeeEEEEEecC
Q 032182 28 ILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYK-GREGKVVQVYRRK 76 (146)
Q Consensus 28 k~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~K-Gk~GkV~~V~~k~ 76 (146)
...-|++|--+|. + +.|..||.|.|---+|- -..|.|+.+....
T Consensus 43 ~~~la~i~GKmRk-~----IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~d 87 (102)
T 1jt8_A 43 KTRLGRIPGRLKN-R----IWVREGDVVIVKPWEVQGDQKCDIIWRYTKT 87 (102)
T ss_dssp EEEEEECCHHHHH-H----HCCCSCEEEEECCBCCTTSEEEEEEEESSCS
T ss_pred CEEEEEEccccee-e----EEecCCCEEEEEeccCCCCceEEEEEEeCHH
Confidence 3456889999998 6 88999999999766666 5679998887543
No 34
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=71.49 E-value=4 Score=33.68 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=43.5
Q ss_pred cceecCCEEEEeecCCCCeEeeEEEEEecCC---EEEEeeeeEEeeCCcEEEeeccccceEEEcCC
Q 032182 47 MPVRKDDEVQVVRGTYKGREGKVVQVYRRKW---VIHIERITREKVNGSTVNVGINPSKVVITKLR 109 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~---~V~VEgin~~K~~G~~~e~pIh~SNv~i~~~~ 109 (146)
+++..|..+.|+.|..-|..|+|..+.+..+ .|.|+ .++|.. +--..|||.++...
T Consensus 173 ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vk-----d~~g~~--F~T~~~nvfvIGk~ 231 (261)
T 3u5c_E 173 IKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIK-----DSLDNT--FVTRLNNVFVIGEQ 231 (261)
T ss_dssp ECCCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEE-----CTTSCE--EEEEGGGEEECCSS
T ss_pred EEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEE-----ECCCCe--EEEEeCeEEEEccC
Confidence 6888999999999999999999999987543 45554 345654 44567899998864
No 35
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=69.88 E-value=3.8 Score=32.48 Aligned_cols=58 Identities=9% Similarity=0.228 Sum_probs=42.4
Q ss_pred ceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeee---e---EEeeCCc---EEEeeccccceEEE
Q 032182 48 PVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERI---T---REKVNGS---TVNVGINPSKVVIT 106 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgi---n---~~K~~G~---~~e~pIh~SNv~i~ 106 (146)
.|..|..|+|++|.+.|+...+++... ++.+.|-|- | +...+-. ....-|++|||.+-
T Consensus 44 si~pGtVlIiL~Gr~~GKrvV~LKql~-sgllLVtGP~~vn~vplrrvn~~~vi~TstkvDis~vki~ 110 (191)
T 4a18_E 44 DIAPGTVLILLAGRFRGKRVVFLKQLK-SGLLLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTA 110 (191)
T ss_dssp TCCTTEEEEECSSTTTTBEEEEEEECT-TSCEEEECCTTTSSCCSEEECGGGEEEEEEECCCTTCCGG
T ss_pred cccCCCEEEEeccccCCCEEEEEEecC-CCeEEEecCccccCCceEEEeeeeEEeeeeEeeccccccc
Confidence 478999999999999999999999876 578888882 1 1111211 23456888988763
No 36
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=69.05 E-value=6.8 Score=27.78 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=25.3
Q ss_pred eecCCEEEEee-c---------CCCCeEeeEEEEEecCCEEEEe
Q 032182 49 VRKDDEVQVVR-G---------TYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 49 IkkGD~V~Vi~-G---------~~KGk~GkV~~V~~k~~~V~VE 82 (146)
.++||.|-|.- | .|-|++|.|..|.....-|.|.
T Consensus 35 yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~Avgv~Vn 78 (97)
T 3j21_R 35 FEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVEIK 78 (97)
T ss_dssp CCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEE
T ss_pred hcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcEEEEEEE
Confidence 48999998753 2 2679999999998876555553
No 37
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=68.06 E-value=8.2 Score=27.73 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=33.3
Q ss_pred eeeeccCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecC
Q 032182 28 ILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRK 76 (146)
Q Consensus 28 k~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~ 76 (146)
...-|+++--+|. + +.|..||.|.|-.-+|-...|.|+.+.+..
T Consensus 55 ~~~l~~i~GK~Rk-~----I~i~~GD~V~ve~~~~~~~kG~I~~~~~r~ 98 (117)
T 2oqk_A 55 QKRLCHIRGKMRK-K----VWVNPGDIVLVSLRDFQDSKGDIILKYTPD 98 (117)
T ss_dssp CEEEEECCHHHHH-H----SCCCTTCEEEEEECTTCTTEEEEEEECCHH
T ss_pred CEEEEEEcCceec-C----CcCCCCCEEEEEEEcCCCCeEEEEEEechH
Confidence 4566788888887 5 677899999997665555578998887753
No 38
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=67.24 E-value=9.4 Score=27.82 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=44.0
Q ss_pred HHHHhhhCCccc-ceecCCEEEEeec---CCCC----eEeeEEEEEecC--CEEEEeeeeEEeeCC--cEEEeeccccce
Q 032182 36 TDLRQKYNVRSM-PVRKDDEVQVVRG---TYKG----REGKVVQVYRRK--WVIHIERITREKVNG--STVNVGINPSKV 103 (146)
Q Consensus 36 ~eLr~ky~~rs~-~IkkGD~V~Vi~G---~~KG----k~GkV~~V~~k~--~~V~VEgin~~K~~G--~~~e~pIh~SNv 103 (146)
+++-+++--..+ .++.||+|.|-.= -.+. -+|.|+...... .+++|..+ .+| -+.-+|+|..++
T Consensus 5 ~~~e~~~~~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki----~~gvGVEr~fpl~SP~I 80 (114)
T 3r8s_P 5 KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKI----SNGEGVERVFQTHSPVV 80 (114)
T ss_dssp HHHHGGGCCSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEE----ETTEEEEEEEETTCTTE
T ss_pred HHHHHHHhccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEe----cCCccEEEEEecCCCcc
Confidence 344444433344 4899999998632 1222 358888887643 35666654 234 466789999998
Q ss_pred EEEcCCC
Q 032182 104 VITKLRL 110 (146)
Q Consensus 104 ~i~~~~~ 110 (146)
.=++.--
T Consensus 81 ~~IeV~r 87 (114)
T 3r8s_P 81 DSISVKR 87 (114)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 7666543
No 39
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=66.03 E-value=20 Score=25.32 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=37.6
Q ss_pred ceecCCEEEEeecCC--CC----eEeeEEEEEecC--CEEEEeeeeEEeeCCcEEEeeccccceEEEcCC
Q 032182 48 PVRKDDEVQVVRGTY--KG----REGKVVQVYRRK--WVIHIERITREKVNGSTVNVGINPSKVVITKLR 109 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~--KG----k~GkV~~V~~k~--~~V~VEgin~~K~~G~~~e~pIh~SNv~i~~~~ 109 (146)
.++.||+|.|-.--- |. -+|.|++..... .+++|..+- ..-|-+.-.|+|..++.=++.-
T Consensus 3 ~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~--~gvGVEr~fpl~SP~I~~IeV~ 70 (98)
T 2ftc_K 3 EFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVI--EGQGVEICFELYNPRVQEIQVV 70 (98)
T ss_pred ccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEec--cCceEEEEEecCCCceeEEEEE
Confidence 368999999864322 22 358888876543 345555441 1124467789999998766553
No 40
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=64.94 E-value=5.7 Score=29.99 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=32.6
Q ss_pred eeeccCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCC
Q 032182 29 LMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKW 77 (146)
Q Consensus 29 ~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~ 77 (146)
..-|++|--+|. + +.|..||.|.|---+|--..|.|+.++....
T Consensus 55 ~~La~I~GKmRk-~----IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~de 98 (143)
T 1d7q_A 55 KRLCHIRGKLRK-K----VWINTSDIILVGLRDYQDNKADVILKYNADE 98 (143)
T ss_dssp EEEEECCSGGGG-S----CCCCTTCEEEEECSSSSSSCCEEEEEECTTT
T ss_pred EEEEEeccccee-e----EEecCCCEEEEeeccCCCCeEEEEEEeCHHH
Confidence 345777777776 5 8899999999986666555688888876543
No 41
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=62.90 E-value=6.9 Score=24.97 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=19.5
Q ss_pred ccCCHHHHhhhCCcccceecCCEEEEeec
Q 032182 32 APLSTDLRQKYNVRSMPVRKDDEVQVVRG 60 (146)
Q Consensus 32 a~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G 60 (146)
-.||+|+|+.+ .|..||.|.|..-
T Consensus 24 ItIPkeiR~~L-----gi~~Gd~l~i~~~ 47 (59)
T 1yfb_A 24 VVIPIELRRTL-----GIAEKDALEIYVD 47 (59)
T ss_dssp EECCHHHHHHT-----TCCTTCEEEEEEE
T ss_pred EEeCHHHHHHc-----CCCCCCEEEEEEE
Confidence 36899999987 4688999998763
No 42
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=61.96 E-value=18 Score=28.01 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=46.3
Q ss_pred cCCHHHHhhhCC----ccc-ceecCCEEEEeecC---CCC----eEeeEEEEEecC--CEEEEeeeeEEeeCC--cEEEe
Q 032182 33 PLSTDLRQKYNV----RSM-PVRKDDEVQVVRGT---YKG----REGKVVQVYRRK--WVIHIERITREKVNG--STVNV 96 (146)
Q Consensus 33 ~Ls~eLr~ky~~----rs~-~IkkGD~V~Vi~G~---~KG----k~GkV~~V~~k~--~~V~VEgin~~K~~G--~~~e~ 96 (146)
.|-.+|-+++-- +.+ .++.||+|.|-.=- .|. -+|.|+.+.... .+++|..| .+| -+.-+
T Consensus 6 ~li~~le~eqlk~l~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRki----s~GvGVER~F 81 (166)
T 2zjr_M 6 KINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKI----SFGEGVERVF 81 (166)
T ss_dssp CCCHHHHHHHTTGGGCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEE----ETTEEEEEEE
T ss_pred HHHHHHHHHHHhhccccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEe----cCCeeEEEEE
Confidence 366666555422 233 48999999997432 121 368888876543 35666655 234 46679
Q ss_pred eccccceEEEcCCC
Q 032182 97 GINPSKVVITKLRL 110 (146)
Q Consensus 97 pIh~SNv~i~~~~~ 110 (146)
|+|..+|.=++.--
T Consensus 82 plhSP~I~kIEVvr 95 (166)
T 2zjr_M 82 PFASPLVNQVTIVE 95 (166)
T ss_dssp ETTCTTEEEEEEEE
T ss_pred ecCCCccceEEEEe
Confidence 99999988666543
No 43
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.58 E-value=6.8 Score=31.94 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=42.7
Q ss_pred cceecCCEEEEeecCCCCeEeeEEEEEec----CCEEEEeeeeEEeeCCcEEEeeccccceEEEcC
Q 032182 47 MPVRKDDEVQVVRGTYKGREGKVVQVYRR----KWVIHIERITREKVNGSTVNVGINPSKVVITKL 108 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k----~~~V~VEgin~~K~~G~~~e~pIh~SNv~i~~~ 108 (146)
+++..|..+.|+.|..-|..|+|..+.+. -+.|.|++ ++|..+ -...|||+++..
T Consensus 177 ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d-----~~g~~F--~T~~~~vfvIGk 235 (243)
T 3j20_E 177 LPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIED-----EEGELF--DTLKEYAFVVGT 235 (243)
T ss_dssp EECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEE-----SSCCCE--EEETTTEEEEES
T ss_pred EeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEc-----CCCCEE--EEEeceEEEECC
Confidence 68899999999999999999999999863 25677774 345543 345688888875
No 44
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=61.42 E-value=21 Score=24.78 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=39.8
Q ss_pred cCCEEEEeecCCCCe-EeeEEEEEecCCEEEEeeeeEEeeCCc------EEEeeccccceEEEcC
Q 032182 51 KDDEVQVVRGTYKGR-EGKVVQVYRRKWVIHIERITREKVNGS------TVNVGINPSKVVITKL 108 (146)
Q Consensus 51 kGD~V~Vi~G~~KGk-~GkV~~V~~k~~~V~VEgin~~K~~G~------~~e~pIh~SNv~i~~~ 108 (146)
-|-.|-+..|++-|. +|+|..|++.++.+.+..+. .||- ...-.-+++.+.|+.-
T Consensus 8 iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~~~~s~eVtls~~DI~~L~ii~~ 69 (84)
T 2vc8_A 8 LGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGVKCLVPEVTFRAGDITELKILEI 69 (84)
T ss_dssp TTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTEECSSSEEEEEGGGCSEEEEEEC
T ss_pred cCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCCCCCCcEEEEEecChhheEEEec
Confidence 377899999999987 79999999999999998773 3442 1233445555555443
No 45
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=60.43 E-value=33 Score=22.72 Aligned_cols=57 Identities=23% Similarity=0.101 Sum_probs=43.5
Q ss_pred ceecCCEEEEeecC--CCCeEeeEEEEEecCCEEEEeeeeEEeeCCcEEEeeccccceEEEcCCC
Q 032182 48 PVRKDDEVQVVRGT--YKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRL 110 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~--~KGk~GkV~~V~~k~~~V~VEgin~~K~~G~~~e~pIh~SNv~i~~~~~ 110 (146)
.|-+|-.|.|+.-. |-|-+|.|-+|.-.+--|..||=|. .+-+-+.+|.+..++..+
T Consensus 1 ~ilPG~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEGGnW------DKLVTf~L~eLe~~~~~~ 59 (66)
T 2jz2_A 1 MIFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNW------DKLVTFRLSELEAVKPIL 59 (66)
T ss_dssp CCCTTCEEEECCTTSTTBTCEEEEEEEETTEEEEEEESSSC------EEEEEEESTTEEECCCCC
T ss_pred CccCCCEEEEeCCCCcccceeEEEEEecCCcEEEEecCCCc------eeEEEEEhhHceeccccc
Confidence 36789999999764 7899999999999888888885332 456667777777766654
No 46
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=58.59 E-value=8.7 Score=30.75 Aligned_cols=51 Identities=8% Similarity=0.262 Sum_probs=39.1
Q ss_pred cceecCCEEEEeecCCCCeEeeEEEEEecC----CEEEEeeeeEEeeCCcEEEeeccccceEEEcC
Q 032182 47 MPVRKDDEVQVVRGTYKGREGKVVQVYRRK----WVIHIERITREKVNGSTVNVGINPSKVVITKL 108 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~----~~V~VEgin~~K~~G~~~e~pIh~SNv~i~~~ 108 (146)
+++..|..+.|+.|..-|..|+|..+.+.. +.|.|+ + ++-...|||+++..
T Consensus 137 ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~iV~v~-------~----~F~T~~~~vfvIGk 191 (213)
T 3kbg_A 137 IKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQ-------E----GFSTIKDHVFMIGS 191 (213)
T ss_dssp ECCSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEET-------T----TEEEEGGGEEEEEC
T ss_pred EEcCCCCEEEEECCCcceEEEEEEEEEEccCCCCCEEEEE-------E----EEEeeeceEEEEcC
Confidence 688999999999999999999999998643 457776 1 23344567777664
No 47
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=57.36 E-value=16 Score=29.03 Aligned_cols=49 Identities=10% Similarity=0.192 Sum_probs=36.4
Q ss_pred ccCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEE
Q 032182 32 APLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHI 81 (146)
Q Consensus 32 a~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~V 81 (146)
-.|+.+ ...|=.+-++++.||.|.|..|...=-.++|..+..+.-.+.|
T Consensus 18 i~L~~~-~~~Hl~~VLR~~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i 66 (251)
T 4e8b_A 18 IALCED-AANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKV 66 (251)
T ss_dssp EECCHH-HHHHHHTTSCCCSCCEEEEECSSSEEEEEEEEEECSSCEEEEE
T ss_pred EEeCHH-HHHHHHHhCcCCCCCEEEEEeCCCcEEEEEEEEeecceEEEEE
Confidence 346665 4566567789999999999998754456899999887655544
No 48
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=57.24 E-value=14 Score=25.14 Aligned_cols=37 Identities=19% Similarity=0.486 Sum_probs=27.8
Q ss_pred eecCCEEEEeecC--CCCeEeeEEEEEec---CCEEEE--eeee
Q 032182 49 VRKDDEVQVVRGT--YKGREGKVVQVYRR---KWVIHI--ERIT 85 (146)
Q Consensus 49 IkkGD~V~Vi~G~--~KGk~GkV~~V~~k---~~~V~V--Egin 85 (146)
|.+||.|.|++=. +-...|+|..||.. .+-|+| |.||
T Consensus 1 i~RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VRFdkVN 44 (75)
T 1jb0_E 1 VQRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVN 44 (75)
T ss_dssp CCTTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEECSSCC
T ss_pred CCCCCEEEEccccceeecCcceEEEEecCCCccccEEEEEeeec
Confidence 5789999999875 55678999999996 344554 4444
No 49
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=57.04 E-value=12 Score=22.87 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=19.9
Q ss_pred ccCCHHHHhhhCCcccceecCCEEEEeecC
Q 032182 32 APLSTDLRQKYNVRSMPVRKDDEVQVVRGT 61 (146)
Q Consensus 32 a~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~ 61 (146)
-.||+++|+.+ .|..||.|.+.--.
T Consensus 14 i~IPk~ir~~l-----gi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 14 VTIPAKVRQKF-----QIKEGDLVKVTFDE 38 (53)
T ss_dssp BCCCHHHHHHS-----CCCTTCEEEEEECS
T ss_pred EEeCHHHHHHc-----CcCCCCEEEEEEEC
Confidence 46899999987 46789999987643
No 50
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_U
Probab=55.57 E-value=11 Score=29.19 Aligned_cols=88 Identities=26% Similarity=0.417 Sum_probs=49.7
Q ss_pred ccCCHHHHhhhCCcccceecCCEEEEee-c---------CCCCeEeeEEEEEecCCEEEEeeeeEEee-CCc--EEEeec
Q 032182 32 APLSTDLRQKYNVRSMPVRKDDEVQVVR-G---------TYKGREGKVVQVYRRKWVIHIERITREKV-NGS--TVNVGI 98 (146)
Q Consensus 32 a~Ls~eLr~ky~~rs~~IkkGD~V~Vi~-G---------~~KGk~GkV~~V~~k~~~V~VEgin~~K~-~G~--~~e~pI 98 (146)
.+|+.-|+ ..++||.|-|.. | .|-|++|.|..|...-.-|+|. +. .|. ..-.-+
T Consensus 25 ~plstym~--------~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvt~~AvgV~Vn-----k~v~gkil~KrInV 91 (164)
T 3iz5_U 25 IPLTTYLR--------TYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEIN-----KQVGNRIIKKRIHV 91 (164)
T ss_dssp CCTHHHHC--------CCCTTCEEEECCCTTCCSSCCCGGGTTEEEEEEEECSSSEEEEEE-----CCSSSSCCEEEEEE
T ss_pred CCHHHHHH--------HhCCCCEEEEEccCcccCCCCCcccCCCCeeEEeecCCEEEEEEE-----eeeCCeeeeeEEEE
Confidence 57775432 248999998852 2 2779999999998877666665 22 233 233333
Q ss_pred cccceEEEcCCCcchhhhhhccccccchh--hhhccCCccc
Q 032182 99 NPSKVVITKLRLDKDRKSLLDRKAKGRAA--ADKEKGTKFT 137 (146)
Q Consensus 99 h~SNv~i~~~~~~~~R~~~le~~~k~~~~--~~~~~~~~~~ 137 (146)
++..| .-...|..+|.+-++--++ ..+++|+..+
T Consensus 92 riEHi-----k~sk~r~~Flkrvkend~kkkeakekg~~v~ 127 (164)
T 3iz5_U 92 RVEHV-----QPSRCNEEFLQRKLNNDKLKAEAKARGEVIS 127 (164)
T ss_dssp CGGGE-----EECHHHHHHHHHHHHHHHHHHHTTTSCCSCS
T ss_pred eHHHc-----ccccCHHHHHHHHHHhHHHHHHHHhcCCccc
Confidence 33333 1134566666554322211 1467775433
No 51
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=54.80 E-value=15 Score=30.62 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=28.7
Q ss_pred ecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 50 RKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 50 kkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
-.|.+..|++|.-||..|.|+-=.-.-+.|+|.
T Consensus 85 CiGN~A~VvSG~AKG~~G~VtGkHGGieHVlV~ 117 (284)
T 3dcl_A 85 CIGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVH 117 (284)
T ss_dssp CBTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred ecCceeEEeecccCCCcceEecccCCeeeEEEE
Confidence 579999999999999999999877776777775
No 52
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=53.58 E-value=6.7 Score=31.65 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=42.5
Q ss_pred ceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeee------EEeeCCc---EEEeeccccceEE
Q 032182 48 PVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERIT------REKVNGS---TVNVGINPSKVVI 105 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin------~~K~~G~---~~e~pIh~SNv~i 105 (146)
.|..|..+++++|.+.|+.-.++++.. ++.+.|.|-. +...+-. ....-|++|+|.+
T Consensus 74 si~pGtVlIil~Gr~~GKrvVfLkqL~-sgllLVtGP~~lNgVplrR~~qk~viaTstkIdIs~Vki 139 (219)
T 3iz5_G 74 TITPGTVLILLAGRYMGKRVVFLKQLQ-SGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISKVNV 139 (219)
T ss_dssp HCSCCSCEECSSSSSSCCEECEEEESS-SSSEEECCCCSSSCCCCEEESSSSCEECSCCCSCSSCCC
T ss_pred cccCCCEEEEeccccCCcEEEEEEecC-CCeEEEcCCccccCCccEEechhhEEecceEeecCcccc
Confidence 478899999999999999999999875 7889998742 1122221 1234688999987
No 53
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=53.52 E-value=21 Score=27.97 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=32.4
Q ss_pred cceecCCEEEEeecC------------CCCeEeeEEEEEecCCEEEEeeeeEEeeCCcEEEeeccc
Q 032182 47 MPVRKDDEVQVVRGT------------YKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINP 100 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~------------~KGk~GkV~~V~~k~~~V~VEgin~~K~~G~~~e~pIh~ 100 (146)
+-|++||.|.|+... .-|..|..++|...+++ +|.|+ +.. .+.+++.+.|
T Consensus 139 ~lV~rG~~V~i~~~~~g~~i~~~G~AL~~G~~Gd~IrVr~~Sgk-iv~g~--V~~-~g~V~V~L~p 200 (219)
T 3tee_A 139 WRVKAGQRVQVIANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQ-IVSGT--VDS-DGNILINLDP 200 (219)
T ss_dssp CSBCTTCEEEEEEECSSCEEEEEEEECSCBCTTSEEEEEETTSC-EEEEE--ECT-TSCEEEEC--
T ss_pred cEEcCCCEEEEEEecCCEEEEEEEEEccccCCCCEEEEECCCCC-EEEEE--Eec-CCEEEEEcCC
Confidence 569999999999654 45888888888776666 45554 222 2445554443
No 54
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=53.38 E-value=0.87 Score=34.39 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=32.7
Q ss_pred eecCCEEEEeecCCCCeEeeEEEEEecC------CEEEEeeeeEE
Q 032182 49 VRKDDEVQVVRGTYKGREGKVVQVYRRK------WVIHIERITRE 87 (146)
Q Consensus 49 IkkGD~V~Vi~G~~KGk~GkV~~V~~k~------~~V~VEgin~~ 87 (146)
+++|-.|.|++|.+.|+...|++...+. +.++|-||..-
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdry 49 (136)
T 3izc_a 5 LKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERY 49 (136)
T ss_dssp CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSS
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccC
Confidence 6889999999999999999999886654 37899998553
No 55
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=52.12 E-value=13 Score=25.12 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=30.6
Q ss_pred eeeccCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEE
Q 032182 29 LMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQ 71 (146)
Q Consensus 29 ~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~ 71 (146)
..-|+++--+|..+ +.|..||.|.|--=++--..|.|+.
T Consensus 38 ~~~c~i~GK~Rk~~----I~Il~GD~V~ve~~~yd~~kgrIi~ 76 (79)
T 3i4o_A 38 KVLAHISGKMRQHY----IRILPEDRVVVELSPYDLSRGRIVY 76 (79)
T ss_dssp EEEEEECHHHHHTT----CCCCTTCEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeCcceecCC----ccCCCCCEEEEEECccCCCcEEEEE
Confidence 56788998888877 7799999999977676555676653
No 56
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=50.62 E-value=4.5 Score=31.20 Aligned_cols=44 Identities=32% Similarity=0.513 Sum_probs=31.6
Q ss_pred eccCCHHHHhhhCCcccceecCCEEEEee-c---------CCCCeEeeEEEEEecCCEEEEe
Q 032182 31 SAPLSTDLRQKYNVRSMPVRKDDEVQVVR-G---------TYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 31 sa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~-G---------~~KGk~GkV~~V~~k~~~V~VE 82 (146)
..+||.-|+ . .++||.|-|.- | .|-|++|.|..|......|+|.
T Consensus 24 ~~plst~m~-~-------yk~GD~VdIk~~~svqKGmPhk~yHGkTGrV~~v~~~AvgViVn 77 (160)
T 2zkr_q 24 VVPLATYMR-I-------YKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVN 77 (160)
T ss_dssp CCCHHHHHC-C-------CCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEE
T ss_pred CCcHHHHHH-H-------cCCCCEEEEEecCCcccCCCCcccCCCCeEEEeEcCCEEEEEEE
Confidence 446776542 2 48999997652 3 2679999999998887777775
No 57
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.61 E-value=7.9 Score=27.84 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=29.7
Q ss_pred eeccCCHHHHhhhCCcccceecCCEEEEeecCCC-CeEeeEEEEEec
Q 032182 30 MSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYK-GREGKVVQVYRR 75 (146)
Q Consensus 30 msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~K-Gk~GkV~~V~~k 75 (146)
.-|++|--+|. + +.|..||.|.|---+|- -..|.|+.+...
T Consensus 40 ~la~i~GK~Rk-~----IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~ 81 (111)
T 2dgy_A 40 FLVSMPSKYRK-N----IWIKRGDFLIVDPIEEGEKVKAEISFVLCK 81 (111)
T ss_dssp EEEECCTTCCS-C----CCCCSSCEEEEEECSSCSSCCEEEEEECCH
T ss_pred EEEEechhhcc-c----EEEcCCCEEEEEecccCCcceEEEEEEeCH
Confidence 33777777763 4 88999999999766654 345888777664
No 58
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=50.49 E-value=15 Score=21.70 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=13.8
Q ss_pred ccceecCCEEEEeecCC
Q 032182 46 SMPVRKDDEVQVVRGTY 62 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~ 62 (146)
.+.+++||.|.|+.-.+
T Consensus 17 eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuy_A 17 ELPLKKGDVIYITREEP 33 (58)
T ss_dssp BCCBCTTCEEEEEEECT
T ss_pred cCCCCCCCEEEEEEecC
Confidence 36789999999997653
No 59
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=49.92 E-value=11 Score=24.42 Aligned_cols=29 Identities=24% Similarity=0.238 Sum_probs=22.9
Q ss_pred eeeeccCCHHHHhhhCCcccceecCCEEEEeec
Q 032182 28 ILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG 60 (146)
Q Consensus 28 k~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G 60 (146)
...-++++--+|..+ +.|..||.|.|-.=
T Consensus 30 ~~~~~~i~Gk~Rk~~----i~i~~GD~V~ve~~ 58 (71)
T 1hr0_W 30 PEILAYISGKMRMHY----IRILPGDRVVVEIT 58 (71)
T ss_dssp CBCCCEECHHHHHTC----CCCCTTCEEEEECC
T ss_pred CEEEEEEcceEeccC----cCCCCCCEEEEEEE
Confidence 456788888888755 77889999999644
No 60
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=49.86 E-value=30 Score=27.36 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=34.2
Q ss_pred CCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 34 LSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 34 Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
|+.+. ..|= +-++++.||.|.|.-|...--.++|..+.++.-.+.|.
T Consensus 28 L~~~~-~~Hl-~VLRl~~Gd~v~l~dg~G~~~~a~I~~~~~~~~~~~i~ 74 (234)
T 1z85_A 28 FDERE-AHHM-RVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIV 74 (234)
T ss_dssp ECHHH-HHHH-HHTTCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEE
T ss_pred eCHHH-HHHH-HhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEEE
Confidence 55543 3454 88899999999999887544568899988776555554
No 61
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=49.75 E-value=25 Score=25.43 Aligned_cols=17 Identities=12% Similarity=0.053 Sum_probs=13.7
Q ss_pred cccceecCCEEEEeecC
Q 032182 45 RSMPVRKDDEVQVVRGT 61 (146)
Q Consensus 45 rs~~IkkGD~V~Vi~G~ 61 (146)
..-.++.||.|.+..|.
T Consensus 88 ~A~~l~~GD~v~~~~~~ 104 (145)
T 1at0_A 88 FADRIEEKNQVLVRDVE 104 (145)
T ss_dssp EGGGCCTTCEEEEECTT
T ss_pred EHHHCcCCCEEEEecCC
Confidence 34579999999999873
No 62
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=49.61 E-value=12 Score=25.84 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=18.1
Q ss_pred cCCHHHHhhhCCcccceecCCEEEEee
Q 032182 33 PLSTDLRQKYNVRSMPVRKDDEVQVVR 59 (146)
Q Consensus 33 ~Ls~eLr~ky~~rs~~IkkGD~V~Vi~ 59 (146)
.||+++|+.+| |..||.|.++.
T Consensus 63 tIPkeiR~~lg-----i~~Gd~l~~~~ 84 (92)
T 2glw_A 63 IIPKALRDVIG-----IKPGEVIEVLL 84 (92)
T ss_dssp ECCHHHHHHHT-----CCTTCEEEEEE
T ss_pred ECcHHHHHHcC-----CCCCCEEEEEE
Confidence 47999999884 68899999863
No 63
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=49.55 E-value=27 Score=26.46 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=43.2
Q ss_pred HHHHhhhCCccc-ceecCCEEEEeecC---CCC----eEeeEEEEEecC--CEEEEeeeeEEeeCC--cEEEeeccccce
Q 032182 36 TDLRQKYNVRSM-PVRKDDEVQVVRGT---YKG----REGKVVQVYRRK--WVIHIERITREKVNG--STVNVGINPSKV 103 (146)
Q Consensus 36 ~eLr~ky~~rs~-~IkkGD~V~Vi~G~---~KG----k~GkV~~V~~k~--~~V~VEgin~~K~~G--~~~e~pIh~SNv 103 (146)
..+-+.+--..+ .++.||+|.|-.=- .+. -+|.|+.+.... .+++|..+ .+| -+.-+|+|..+|
T Consensus 8 ~~ie~~~~~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRki----s~gvGVEr~Fpl~SP~I 83 (146)
T 3v2d_T 8 KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKV----SYGVGVERIFPLHSPLI 83 (146)
T ss_dssp HHHHHTTCCCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEE----ETTEEEEEEEETTCTTE
T ss_pred HHHHHHHhhccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEe----cCCccEEEEEecCCCcc
Confidence 334444433344 48999999986422 222 358888887643 35677655 234 466789999998
Q ss_pred EEEcC
Q 032182 104 VITKL 108 (146)
Q Consensus 104 ~i~~~ 108 (146)
.=++.
T Consensus 84 ~~IeV 88 (146)
T 3v2d_T 84 QKIDI 88 (146)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 76654
No 64
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=49.00 E-value=9.6 Score=29.31 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=25.6
Q ss_pred eecCCEEEEee-c---------CCCCeEeeEEEEEecCCEEEEe
Q 032182 49 VRKDDEVQVVR-G---------TYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 49 IkkGD~V~Vi~-G---------~~KGk~GkV~~V~~k~~~V~VE 82 (146)
.++||.|-|.- | .|-|++|.|..|....--|+|.
T Consensus 34 yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVn 77 (160)
T 3izc_U 34 YKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIIN 77 (160)
T ss_dssp CCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEECSSSEEEEEC
T ss_pred hcCCCEEEEeccCccCCCCCCcccCCCCeEEEeeCCcEEEEEEE
Confidence 48999998852 2 2679999999998876556654
No 65
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=48.81 E-value=0.91 Score=34.29 Aligned_cols=39 Identities=15% Similarity=0.396 Sum_probs=32.5
Q ss_pred eecCCEEEEeecCCCCeEeeEEEEEecC------CEEEEeeeeEE
Q 032182 49 VRKDDEVQVVRGTYKGREGKVVQVYRRK------WVIHIERITRE 87 (146)
Q Consensus 49 IkkGD~V~Vi~G~~KGk~GkV~~V~~k~------~~V~VEgin~~ 87 (146)
+++|-.|.|++|.+.|+...|++...+. +.++|-||..-
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdry 49 (136)
T 3iz5_a 5 LKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKY 49 (136)
T ss_dssp CCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTT
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccC
Confidence 6889999999999999999999886544 37899998543
No 66
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=48.81 E-value=33 Score=23.93 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=42.7
Q ss_pred ecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEeeCCcEEEeeccccce
Q 032182 50 RKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKV 103 (146)
Q Consensus 50 kkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K~~G~~~e~pIh~SNv 103 (146)
--|-.+.+|+=.+-=.+|.+-.|+....+|.+++|----..|.....+|.||+-
T Consensus 11 yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~ 64 (88)
T 2vxe_A 11 ELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQ 64 (88)
T ss_dssp CTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCS
T ss_pred ccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCc
Confidence 358889999999888999999999999999999885544445444567777764
No 67
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=46.75 E-value=25 Score=28.02 Aligned_cols=49 Identities=14% Similarity=0.252 Sum_probs=35.7
Q ss_pred cCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 33 PLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 33 ~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
.|+.+ ...|=.+-++++.||.|.|.-|...--.++|..+.++.-.+.|.
T Consensus 21 ~L~~~-~~~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~~~~~~~~~~i~ 69 (257)
T 1vhy_A 21 YLSED-AANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEIL 69 (257)
T ss_dssp ECCHH-HHHHHHTTSCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEEC
T ss_pred EeCHH-HHHHHHHHhccCCCCEEEEEcCCCCEEEEEEEEeeCCeEEEEEE
Confidence 46655 44565678899999999999886443568999998776555554
No 68
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=46.74 E-value=13 Score=23.38 Aligned_cols=17 Identities=6% Similarity=0.165 Sum_probs=13.5
Q ss_pred ccceecCCEEEEeecCC
Q 032182 46 SMPVRKDDEVQVVRGTY 62 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~ 62 (146)
.+.+++||.|.|+.-.+
T Consensus 19 eLsf~~Gd~i~v~~~~~ 35 (68)
T 2ew3_A 19 ELGFKEGDIITLTNQID 35 (68)
T ss_dssp BCCBCTTCEEEEEEESS
T ss_pred ccCCCCCCEEEEEEecC
Confidence 36789999999998543
No 69
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=46.17 E-value=14 Score=21.92 Aligned_cols=16 Identities=6% Similarity=0.395 Sum_probs=13.2
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 18 eLs~~~Gd~i~v~~~~ 33 (58)
T 1sem_A 18 ELAFKRGDVITLINKD 33 (58)
T ss_dssp BCCBCTTCEEEEEECS
T ss_pred CcCCCCCCEEEEEEec
Confidence 3678999999999754
No 70
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=45.23 E-value=35 Score=27.28 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=36.5
Q ss_pred eccCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 31 SAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 31 sa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
.-.|+.+ ...|=.+-++++.||.|.|..|...--.++|..++++.-.+.|.
T Consensus 16 ~~~L~~~-~~~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i~ 66 (257)
T 3kw2_A 16 SDRLPDD-EAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVC 66 (257)
T ss_dssp CSBCCHH-HHHHHHTTSCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEE
T ss_pred eEEeCHH-HHHHHHHhccCCCCCEEEEEECCCCEEEEEEEEeeCCEEEEEEE
Confidence 4557654 44565677899999999999987433468899998776555443
No 71
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=44.68 E-value=47 Score=20.82 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=27.0
Q ss_pred cceecCCEEEEee-cCCCCeEeeEEEEEecCCEEEEe
Q 032182 47 MPVRKDDEVQVVR-GTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 47 ~~IkkGD~V~Vi~-G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
...++||.+...- .+-+=-.++|++|....+.+.|.
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~ 43 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAIT 43 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEE
Confidence 5679999999985 44334579999999876666664
No 72
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=44.22 E-value=21 Score=21.11 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=13.5
Q ss_pred ccceecCCEEEEeecCC
Q 032182 46 SMPVRKDDEVQVVRGTY 62 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~ 62 (146)
.+.+++||.|.|+.-.+
T Consensus 17 eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuu_A 17 EITITPGDKISLVARDT 33 (58)
T ss_dssp BCCBCTTCCEEEEECCS
T ss_pred cccCCCCCEEEEeEcCC
Confidence 36789999999997543
No 73
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=44.14 E-value=15 Score=21.91 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=13.5
Q ss_pred ccceecCCEEEEeecCC
Q 032182 46 SMPVRKDDEVQVVRGTY 62 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~ 62 (146)
.+.+++||.|.|+.-.+
T Consensus 20 eLs~~~Gd~i~v~~~~~ 36 (59)
T 2g6f_X 20 ELSFSKGDVIHVTRVEE 36 (59)
T ss_dssp BCCBCTTCEEEEEEECT
T ss_pred CcCCCCCCEEEEEEecC
Confidence 46789999999997543
No 74
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=43.85 E-value=18 Score=24.62 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=19.1
Q ss_pred ecCCEEEEeec--------------CCCCeEeeEEEEEe
Q 032182 50 RKDDEVQVVRG--------------TYKGREGKVVQVYR 74 (146)
Q Consensus 50 kkGD~V~Vi~G--------------~~KGk~GkV~~V~~ 74 (146)
+.||+|.|.+. +.+|.+|+|.++..
T Consensus 2 k~GdrVrV~~sv~Vyh~P~~r~~~fDl~GmEGeV~~~v~ 40 (75)
T 1dj7_B 2 NVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLT 40 (75)
T ss_dssp CTTCEEEECSCCEESCCTTSTTSCEECTTCEEEEEEECS
T ss_pred CCCCEEEEcccEEEEeCCccCCCCcccccCEEEEEEEEe
Confidence 67999999754 25688999888764
No 75
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=43.22 E-value=16 Score=22.57 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.1
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 19 eLsf~~Gd~i~v~~~~ 34 (67)
T 2bzy_A 19 ALALEVGDIVKVTRMN 34 (67)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred ccccCCCCEEEEEEec
Confidence 4678999999998753
No 76
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=42.24 E-value=14 Score=28.75 Aligned_cols=57 Identities=11% Similarity=0.211 Sum_probs=41.9
Q ss_pred ceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeE------EeeCCc---EEEeeccccceEE
Q 032182 48 PVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITR------EKVNGS---TVNVGINPSKVVI 105 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~------~K~~G~---~~e~pIh~SNv~i 105 (146)
.|..|..+++++|.+.|+.-.+++... ++-+.|-|--. ...+-. ...--|++|+|.+
T Consensus 33 Si~pGtvlIil~Gr~~GkrvVfLKql~-sglllVTGP~~lNgvplrR~~q~~vIaTstkidis~vki 98 (176)
T 3izc_G 33 SLVPGTVLILLAGRFRGKRVVYLKHLE-DNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNV 98 (176)
T ss_dssp HCCCCSCEECCSSSSSCCCBEEEEESS-SSSEEEECCCSSSCCCCEEESSSSCEECSCCCSSSSCCC
T ss_pred cCCCCCEEEEeccccCCCEEEEEEecC-CCeEEEecCceecCCcceeeecceEEeeeeeeecccccc
Confidence 378899999999999999999998885 67788876421 122222 1245789999988
No 77
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.29 E-value=17 Score=23.06 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=12.0
Q ss_pred ccceecCCEEEEee
Q 032182 46 SMPVRKDDEVQVVR 59 (146)
Q Consensus 46 s~~IkkGD~V~Vi~ 59 (146)
.+.+++||.|.|+.
T Consensus 30 eLsf~~Gd~i~v~~ 43 (75)
T 2ege_A 30 RLALRAGDVVMVYG 43 (75)
T ss_dssp BCCBCTTCEEEEES
T ss_pred cceECCCCEEEEeE
Confidence 36789999999995
No 78
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=40.74 E-value=25 Score=21.63 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=13.1
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (69)
T 1ruw_A 19 ELPLKKGDIVFISRDE 34 (69)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred cccCCCCCEEEEEEec
Confidence 4678999999999754
No 79
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=40.46 E-value=37 Score=21.79 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=20.1
Q ss_pred ceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 48 PVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
.++.||.|.| +|++|++.++++.+.
T Consensus 45 ~~~~Gd~V~v----------~V~~vd~~~~~i~ls 69 (80)
T 2k52_A 45 NLNVGDEIIV----------QAIDVRPEKREIDFK 69 (80)
T ss_dssp GCCTTCEEEE----------EEEEEETTTTEEEEE
T ss_pred eeCCCCEEEE----------EEEEEECCCCEEEEE
Confidence 4789999987 688888887877664
No 80
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=39.70 E-value=20 Score=21.53 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=13.1
Q ss_pred cceecCCEEEEeecCC
Q 032182 47 MPVRKDDEVQVVRGTY 62 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~~ 62 (146)
+.+++||.|.|+.-.+
T Consensus 21 Ls~~~Gd~i~v~~~~~ 36 (60)
T 1w70_A 21 LNFKAGDVIFLLSRIN 36 (60)
T ss_dssp CCBCTTCEEEEEEECS
T ss_pred ccCCCCCEEEEEEeCC
Confidence 6789999999997543
No 81
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=39.68 E-value=33 Score=19.96 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=13.1
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 16 eLs~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 16 EISIDPGDIITVIRGD 31 (54)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CccCCCCCEEEEEEec
Confidence 3678999999998754
No 82
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=39.50 E-value=20 Score=21.70 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=13.5
Q ss_pred ccceecCCEEEEeecCC
Q 032182 46 SMPVRKDDEVQVVRGTY 62 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~ 62 (146)
.+.+++||.|.|+.-.+
T Consensus 22 eLs~~~Gd~i~v~~~~~ 38 (64)
T 2ak5_A 22 ELSFSKGDVIHVTRVEE 38 (64)
T ss_dssp BCCBCTTCEEEEEECCT
T ss_pred cccCCCCCEEEEeEecC
Confidence 46789999999997543
No 83
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=39.32 E-value=20 Score=22.14 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=13.5
Q ss_pred ccceecCCEEEEeecCC
Q 032182 46 SMPVRKDDEVQVVRGTY 62 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~ 62 (146)
.+.+++||.|.|+.-.+
T Consensus 24 eLs~~~Gd~i~v~~~~~ 40 (67)
T 2eyx_A 24 ALALEVGELVKVTKINV 40 (67)
T ss_dssp BCCBCSSEEEEEEEECT
T ss_pred ccccCCCCEEEEEEecC
Confidence 47789999999986543
No 84
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.32 E-value=20 Score=22.66 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=12.5
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 23 eLs~~~Gd~i~v~~~ 37 (78)
T 2yuo_A 23 ELGFRKNDIITIISQ 37 (78)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CccCCCCCEEEEEEe
Confidence 367899999999973
No 85
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=38.24 E-value=24 Score=28.19 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.3
Q ss_pred ceecCCEEEEeecCCCCeEeeEEEEEec
Q 032182 48 PVRKDDEVQVVRGTYKGREGKVVQVYRR 75 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~KGk~GkV~~V~~k 75 (146)
|++.||.|++ -|..|.|.+|.-.
T Consensus 128 pf~vGD~I~i-----~~~~G~V~~I~l~ 150 (285)
T 3udc_A 128 QFSVGDYVTI-----NGISGTVEEIGLR 150 (285)
T ss_dssp SCCTTCEEEE-----TTEEEEEEEECSS
T ss_pred CccCCCEEEE-----CCEEEEEEEeeee
Confidence 6899999999 3788999988664
No 86
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=37.99 E-value=25 Score=20.89 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=12.4
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 19 eLs~~~Gd~i~v~~~ 33 (60)
T 2x3w_D 19 ELSFKAGDELTKLGE 33 (60)
T ss_dssp BCCBCTTCEEEECSC
T ss_pred cccCCCCCEEEEEEc
Confidence 367899999999864
No 87
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=37.82 E-value=22 Score=21.31 Aligned_cols=15 Identities=7% Similarity=0.222 Sum_probs=12.6
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (60)
T 2gnc_A 22 ELSFKKGASLLLYHR 36 (60)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCCCCCEEEEEEe
Confidence 367899999999874
No 88
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=37.79 E-value=24 Score=24.91 Aligned_cols=54 Identities=7% Similarity=0.121 Sum_probs=41.4
Q ss_pred ecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEEeeCCcEEEeeccccce
Q 032182 50 RKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKV 103 (146)
Q Consensus 50 kkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~K~~G~~~e~pIh~SNv 103 (146)
-.|-.+.+|+=.+-=.+|.+-.|+....+|.+++|----..|.....||.||+-
T Consensus 17 ~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~ 70 (95)
T 2fb7_A 17 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDE 70 (95)
T ss_dssp CSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCC
T ss_pred ccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCc
Confidence 357888999998888999999999999999999874433344334456877763
No 89
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=37.14 E-value=12 Score=24.26 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=24.3
Q ss_pred eeeeccCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeE
Q 032182 28 ILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKV 69 (146)
Q Consensus 28 k~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV 69 (146)
...-|+++--+|..+ +.+..||.|.|-.=++-...|.|
T Consensus 29 ~~~~~~i~Gk~Rk~~----i~i~vGD~V~ve~~~~~~~kg~I 66 (71)
T 1ah9_A 29 HVVTAHISGKMRKNY----IRILTGDKVTVELTPYDLSKGRI 66 (71)
T ss_dssp CEEEEEECSSGGGTT----CCCCTTCEECCEECSSCTTEEEE
T ss_pred CEEEEEEcceEeccC----ccCCCCCEEEEEEecCCCCEEEE
Confidence 345677777777654 77789999998643322224544
No 90
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=36.69 E-value=21 Score=22.47 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=12.5
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 26 eLs~~~Gd~i~v~~~ 40 (74)
T 1j3t_A 26 HLNFSKHDIITVLEQ 40 (74)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred ccCCCCCCEEEEEec
Confidence 367899999999874
No 91
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=36.62 E-value=35 Score=21.49 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=13.5
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 34 eLsf~~Gd~i~v~~~~ 49 (78)
T 1k1z_A 34 FLRLNPGDIVELTKAE 49 (78)
T ss_dssp CCCBCTTCEEEEEECC
T ss_pred ccCCCCCCEEEEEEcC
Confidence 4779999999999863
No 92
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=36.55 E-value=27 Score=28.04 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=34.3
Q ss_pred CCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 34 LSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 34 Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
|+.+ ...|=.+-++++.||.|.|.-|...--.++|..+.++.-.+.|.
T Consensus 23 L~~~-~~~Hl~~VLRl~~Gd~i~l~dg~G~~~~a~I~~~~~~~~~~~i~ 70 (268)
T 1vhk_A 23 ITGE-EVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVI 70 (268)
T ss_dssp EESH-HHHHHHTTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEE
T ss_pred eCHH-HHHHHHHhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEEE
Confidence 4433 34565677899999999999887555568999888765554443
No 93
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=36.42 E-value=23 Score=22.16 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=13.5
Q ss_pred ccceecCCEEEEeecCC
Q 032182 46 SMPVRKDDEVQVVRGTY 62 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~ 62 (146)
.+.+++||.|.|+.-.+
T Consensus 29 eLs~~~Gd~i~v~~~~~ 45 (73)
T 3c0c_A 29 ELGFREGDLITLTNQID 45 (73)
T ss_dssp BCCBCTTCEEEEEEECS
T ss_pred CccCcCCCEEEEEEecC
Confidence 36789999999997543
No 94
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.19 E-value=26 Score=21.57 Aligned_cols=16 Identities=6% Similarity=0.125 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (68)
T 1x2k_A 23 ELYFEEGDIIYITDMS 38 (68)
T ss_dssp BCCCCSSCEEEEEECS
T ss_pred cccCCCCCEEEEEEcC
Confidence 4678999999998643
No 95
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=35.61 E-value=26 Score=22.22 Aligned_cols=16 Identities=6% Similarity=0.293 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.=.
T Consensus 29 eLs~~~Gd~i~vl~~~ 44 (79)
T 1uhc_A 29 ELSVSANQKLKILEFK 44 (79)
T ss_dssp BCCBCTTCEEEEEESC
T ss_pred ccCCCCCCEEEEEECC
Confidence 3678999999999743
No 96
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=35.40 E-value=30 Score=20.78 Aligned_cols=15 Identities=7% Similarity=0.390 Sum_probs=12.8
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (62)
T 2iim_A 22 DLGFEKGEQLRILEQ 36 (62)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CcCCCCCCEEEEEEc
Confidence 367899999999975
No 97
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=35.30 E-value=51 Score=25.65 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=34.8
Q ss_pred cCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 33 PLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 33 ~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
.|+.+ ...|=.+-++++.||.|.|.-|.. --.++|..+.+ .-.+.|.
T Consensus 14 ~L~~~-~~~Hl~~VlRl~~Gd~v~l~dg~g-~~~a~i~~~~~-~~~~~i~ 60 (228)
T 1v6z_A 14 VLPLR-ETRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGP-PLRYRVL 60 (228)
T ss_dssp BCCHH-HHHHHHTTSCCCTTCEEEEECSSC-EEEEEEEECCS-SCEEEEE
T ss_pred EeCHH-HHHHHHHhccCCCCCEEEEEeCCc-EEEEEEEECCC-eEEEEEE
Confidence 46654 345656778999999999998876 55688988887 6555554
No 98
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.28 E-value=25 Score=21.95 Aligned_cols=15 Identities=7% Similarity=0.242 Sum_probs=12.4
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 25 eLs~~~Gd~i~v~~~ 39 (72)
T 2dl8_A 25 ELSFKKGASLLLYQR 39 (72)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred EeccCCCCEEEEEee
Confidence 367899999999864
No 99
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=35.18 E-value=25 Score=22.09 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=12.6
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 18 eLs~~~Gd~i~vl~~ 32 (69)
T 2ydl_A 18 ELTIKEGDIVTLINK 32 (69)
T ss_dssp BCCBCTTCEEEEEES
T ss_pred ccccCCCCEEEEEEc
Confidence 367899999999964
No 100
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=34.94 E-value=29 Score=21.43 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=12.2
Q ss_pred ccceecCCEEEEee
Q 032182 46 SMPVRKDDEVQVVR 59 (146)
Q Consensus 46 s~~IkkGD~V~Vi~ 59 (146)
.+.+++||.|.|+.
T Consensus 27 eLs~~~Gd~i~v~~ 40 (71)
T 1csk_A 27 DLPFCKGDVLTIVA 40 (71)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred cCCCCCCCEEEEeE
Confidence 46789999999998
No 101
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=34.63 E-value=23 Score=23.12 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=20.0
Q ss_pred eeccCCHHHHhhhCCcccceecCCEEEEee
Q 032182 30 MSAPLSTDLRQKYNVRSMPVRKDDEVQVVR 59 (146)
Q Consensus 30 msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~ 59 (146)
..-+||+++++.+| |..||.|.|..
T Consensus 13 ~~v~iPk~~~~~lg-----l~~gd~v~i~~ 37 (82)
T 1mvf_D 13 PAVRIPATLMQALN-----LNIDDEVKIDL 37 (82)
T ss_dssp EEEECCHHHHHHTT-----CCTTCBEEEEE
T ss_pred cEEEECHHHHHHcC-----CCCCCEEEEEE
Confidence 45679999999874 57899998865
No 102
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=34.30 E-value=27 Score=20.79 Aligned_cols=14 Identities=14% Similarity=0.532 Sum_probs=12.2
Q ss_pred ccceecCCEEEEee
Q 032182 46 SMPVRKDDEVQVVR 59 (146)
Q Consensus 46 s~~IkkGD~V~Vi~ 59 (146)
.+.+++||.|.|+.
T Consensus 21 eLs~~~Gd~i~v~~ 34 (63)
T 3eg3_A 21 TLSITKGEKLRVLG 34 (63)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred ccCCCCCCEEEEEE
Confidence 36799999999997
No 103
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=33.83 E-value=43 Score=20.48 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 26 eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 26 FLRLNPGDIVELTKA 40 (70)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred cCCcCCCCEEEEEeC
Confidence 467899999999986
No 104
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.75 E-value=27 Score=22.10 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=12.6
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 26 eLs~~~Gd~i~v~~~ 40 (76)
T 2epd_A 26 ELSFRRGDVLRLHER 40 (76)
T ss_dssp BCEECTTCEEEEEEE
T ss_pred ccCCCCCCEEEEEEe
Confidence 477999999999874
No 105
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=33.27 E-value=31 Score=21.78 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=12.8
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 21 eLs~~~Gd~i~v~~~~ 36 (73)
T 2lcs_A 21 ELRLAEGDIVFISYKH 36 (73)
T ss_dssp BCCBCTTCEEEEEEEE
T ss_pred ccCCcCCCEEEEEEEc
Confidence 3678999999998643
No 106
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=32.95 E-value=32 Score=21.70 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=13.6
Q ss_pred ccceecCCEEEEeecCC
Q 032182 46 SMPVRKDDEVQVVRGTY 62 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~ 62 (146)
.+.+++||.|.|+.-.+
T Consensus 27 eLs~~~Gd~i~v~~~~~ 43 (73)
T 2ebp_A 27 SLKLKKGDIIDIISKPP 43 (73)
T ss_dssp BCCBCSSCEEEEEECCS
T ss_pred ccCCCCCCEEEEEEeCC
Confidence 46789999999997543
No 107
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=32.45 E-value=29 Score=21.53 Aligned_cols=16 Identities=13% Similarity=0.412 Sum_probs=13.1
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 25 eLs~~~Gd~i~v~~~~ 40 (73)
T 2k9g_A 25 ELTIKEGDIVTLINKD 40 (73)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred eeeECCCCEEEEEECC
Confidence 3678999999999753
No 108
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=32.28 E-value=28 Score=20.98 Aligned_cols=16 Identities=13% Similarity=0.445 Sum_probs=12.8
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (65)
T 1w1f_A 23 DLSFKKGEKMKVLEEH 38 (65)
T ss_dssp CCCBCTTCEEEEEEEC
T ss_pred cCCCCCCCEEEEEEcC
Confidence 3678999999998743
No 109
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.11 E-value=45 Score=21.07 Aligned_cols=16 Identities=19% Similarity=0.410 Sum_probs=13.4
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 33 eLsf~~Gd~i~v~~~~ 48 (80)
T 2d8h_A 33 DLNFQAGDRITVISKT 48 (80)
T ss_dssp BCEECTTCEEEEEECC
T ss_pred eeeEcCCCEEEEeECc
Confidence 4789999999998754
No 110
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=31.91 E-value=29 Score=20.45 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=12.3
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (59)
T 1yn8_A 17 ELRLAEGDIVFISYK 31 (59)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCCCCCEEEEEEc
Confidence 367899999999864
No 111
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.42 E-value=34 Score=21.80 Aligned_cols=16 Identities=13% Similarity=0.420 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 26 eLs~~~Gd~i~v~~~~ 41 (81)
T 2ysq_A 26 ELAFKAGDVIKVLDAS 41 (81)
T ss_dssp SCCCCTTCEEEEEECC
T ss_pred cCCCCCCCEEEEEEEc
Confidence 3678999999998753
No 112
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=31.00 E-value=35 Score=26.65 Aligned_cols=45 Identities=27% Similarity=0.132 Sum_probs=31.2
Q ss_pred CCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEE
Q 032182 34 LSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHI 81 (146)
Q Consensus 34 Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~V 81 (146)
|+.+ ...|= +-++++.||.|.| -|...--.++|..+..+.-.+.|
T Consensus 16 L~~~-~~~Hl-~VlRl~~Gd~v~l-dg~g~~~~a~i~~~~~~~~~~~i 60 (229)
T 2egv_A 16 LREG-EVKHF-RVRRIEKDEEFGV-IHEGKIYVCKVRREDKREISCEI 60 (229)
T ss_dssp EETH-HHHHH-HHTTCCTTCCEEE-EETTEEEEEEEEEECSSEEEEEE
T ss_pred eCHH-HHHHH-HhhcCCCCCEEEE-eCCCCEEEEEEEEecCCEEEEEE
Confidence 4444 33454 7789999999999 88744446789888776544444
No 113
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=30.75 E-value=39 Score=26.12 Aligned_cols=24 Identities=13% Similarity=0.439 Sum_probs=19.3
Q ss_pred cCCHHHHhhhCCcccceecCCEEEEeecC
Q 032182 33 PLSTDLRQKYNVRSMPVRKDDEVQVVRGT 61 (146)
Q Consensus 33 ~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~ 61 (146)
.||+|+|+.+| |+.||.|.+..-.
T Consensus 17 tIPkeiR~~Lg-----I~~GD~l~~~~~~ 40 (178)
T 2w1t_A 17 VIPKEIRRTLR-----IREGDPLEIFVDR 40 (178)
T ss_dssp ECCHHHHHHTT-----CCTTCEEEEEECT
T ss_pred EEcHHHHHHcC-----cCCCCEEEEEEeC
Confidence 58999999884 5789999987543
No 114
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.50 E-value=33 Score=21.34 Aligned_cols=14 Identities=0% Similarity=0.226 Sum_probs=12.3
Q ss_pred cceecCCEEEEeec
Q 032182 47 MPVRKDDEVQVVRG 60 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G 60 (146)
+.+++||.|.|+.-
T Consensus 25 Lsf~~Gd~i~v~~~ 38 (73)
T 2dl7_A 25 LSFPEGAIIRILNK 38 (73)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEEC
Confidence 67899999999975
No 115
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.21 E-value=29 Score=21.37 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=12.3
Q ss_pred cceecCCEEEEeecC
Q 032182 47 MPVRKDDEVQVVRGT 61 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~ 61 (146)
+.+++||.|.|+.-.
T Consensus 24 Ls~~~Gd~i~v~~~~ 38 (68)
T 2dmo_A 24 LQVMPGNIVFVLKKG 38 (68)
T ss_dssp CCCCTTCEEEECEEC
T ss_pred CCCCCCCEEEEEEeC
Confidence 678999999998643
No 116
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.19 E-value=47 Score=20.74 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=13.1
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 26 eLs~~~Gd~i~v~~~~ 41 (77)
T 2enm_A 26 ELTVTEGEIITVTNPN 41 (77)
T ss_dssp BCCCCTTCEEEEEESC
T ss_pred eecCCCCCEEEEeEcc
Confidence 4678999999999753
No 117
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=29.71 E-value=35 Score=21.07 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=11.9
Q ss_pred ccceecCCEEEEee
Q 032182 46 SMPVRKDDEVQVVR 59 (146)
Q Consensus 46 s~~IkkGD~V~Vi~ 59 (146)
.+.+++||.|.|+.
T Consensus 24 eLs~~~Gd~i~v~~ 37 (69)
T 1uhf_A 24 DLTFTEGEEILVTQ 37 (69)
T ss_dssp BCCBCTTCEEEECE
T ss_pred ccCCCCCCEEEEEE
Confidence 36789999999986
No 118
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=28.80 E-value=39 Score=19.94 Aligned_cols=17 Identities=6% Similarity=0.180 Sum_probs=13.7
Q ss_pred ccceecCCEEEEeecCC
Q 032182 46 SMPVRKDDEVQVVRGTY 62 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~ 62 (146)
.+.+++||.|.|+.-.+
T Consensus 17 eLs~~~Gd~i~v~~~~~ 33 (58)
T 2bz8_A 17 ELTISVGEIITNIRKED 33 (58)
T ss_dssp BCCBCTTCEEEEEECCT
T ss_pred EeeECCCCEEEEEEeCC
Confidence 36789999999998644
No 119
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.80 E-value=32 Score=22.18 Aligned_cols=15 Identities=7% Similarity=0.235 Sum_probs=12.4
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 24 eLsf~~Gd~i~v~~~ 38 (85)
T 2dlp_A 24 LLSFHRGDLIKLLPV 38 (85)
T ss_dssp BCCBCTTCEEEECCC
T ss_pred CccCcCCCEEEEEEc
Confidence 367899999999963
No 120
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=28.80 E-value=1e+02 Score=18.80 Aligned_cols=35 Identities=3% Similarity=-0.074 Sum_probs=24.8
Q ss_pred ceecCCEEEEee-cCCCCeEeeEEEEEecCCEEEEe
Q 032182 48 PVRKDDEVQVVR-GTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 48 ~IkkGD~V~Vi~-G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
.+++||.+...- ++..=-.++|++++...+.+.|.
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~ 38 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVV 38 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEE
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEE
Confidence 358899988874 34333579999998766666664
No 121
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=28.21 E-value=35 Score=21.75 Aligned_cols=15 Identities=7% Similarity=0.306 Sum_probs=12.5
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 33 eLsf~~Gd~i~Vl~~ 47 (72)
T 2l0a_A 33 ELTFKAGEIITVLDD 47 (72)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred ccCCCCCCEEEEEEe
Confidence 367899999999973
No 122
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=28.03 E-value=47 Score=21.10 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.=.
T Consensus 24 ELsf~~Gd~i~Vl~~~ 39 (69)
T 1nm7_A 24 EVALKKGDLMAILSKK 39 (69)
T ss_dssp CCCCCTTCEEEECCSS
T ss_pred ccCCCCCCEEEEEecC
Confidence 3678999999999754
No 123
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=27.90 E-value=58 Score=21.45 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=30.8
Q ss_pred CCHHHHhhhCCc---ccceecCCEEEEee-cCCCCeEeeEEEEEecCCEEEEe
Q 032182 34 LSTDLRQKYNVR---SMPVRKDDEVQVVR-GTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 34 Ls~eLr~ky~~r---s~~IkkGD~V~Vi~-G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
|-.+|++-|.-. ...+++||.+.+.- .+..=..++|+++.. ++.+.|.
T Consensus 10 Lm~~m~~~y~~~~~~~~~~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~ 61 (94)
T 3fdr_A 10 LVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLY 61 (94)
T ss_dssp HHHHHHHHHTTCCCCCCCCCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEE
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEE
Confidence 445666666533 35689999998874 443334799999964 3455554
No 124
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.57 E-value=38 Score=21.43 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=12.9
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 33 eLs~~~Gd~i~v~~~~ 48 (79)
T 1x69_A 33 EISFDPDDIITNIEMI 48 (79)
T ss_dssp BCCCCTTCEEEEEEEC
T ss_pred CcCcCCCCEEEEeEec
Confidence 4678999999998643
No 125
>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=27.52 E-value=45 Score=20.93 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=13.1
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 31 eLs~~~Gd~i~v~~~~ 46 (80)
T 2v1r_A 31 EVALKKGDLMAILSKK 46 (80)
T ss_dssp BCCBCTTCEEEEEEEE
T ss_pred EecCCCCCEEEEEECC
Confidence 4678999999998754
No 126
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=27.04 E-value=43 Score=24.39 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=21.6
Q ss_pred CHHHHhhhCCcccc----eecCCEEEEeecC
Q 032182 35 STDLRQKYNVRSMP----VRKDDEVQVVRGT 61 (146)
Q Consensus 35 s~eLr~ky~~rs~~----IkkGD~V~Vi~G~ 61 (146)
.++|..+||++++| ++-|..|.-+.|-
T Consensus 78 ~~~la~~ygV~siPTlilFkdG~~v~~~vG~ 108 (137)
T 2qsi_A 78 ERGLMARFGVAVCPSLAVVQPERTLGVIAKI 108 (137)
T ss_dssp HHHHHHHHTCCSSSEEEEEECCEEEEEEESC
T ss_pred CHHHHHHcCCccCCEEEEEECCEEEEEEeCC
Confidence 35678999999997 7788888877774
No 127
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=27.01 E-value=43 Score=24.51 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=20.7
Q ss_pred CHHHHhhhCCcccc----eecCCEEEEeecC
Q 032182 35 STDLRQKYNVRSMP----VRKDDEVQVVRGT 61 (146)
Q Consensus 35 s~eLr~ky~~rs~~----IkkGD~V~Vi~G~ 61 (146)
.++|..+|||+++| ++-|..|--+.|-
T Consensus 80 ~~~lA~~ygV~sIPTlilFk~G~~v~~~~G~ 110 (140)
T 2qgv_A 80 SEAIGDRFGAFRFPATLVFTGGNYRGVLNGI 110 (140)
T ss_dssp HHHHHHHHTCCSSSEEEEEETTEEEEEEESC
T ss_pred CHHHHHHcCCccCCEEEEEECCEEEEEEecC
Confidence 35678899999997 6777777777763
No 128
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=26.97 E-value=40 Score=21.19 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=14.5
Q ss_pred ccceecCCEEEEeecCCCC
Q 032182 46 SMPVRKDDEVQVVRGTYKG 64 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~KG 64 (146)
.+.+++||.|.|+.-.+-|
T Consensus 22 ELs~~~Gd~i~v~~~~~~g 40 (65)
T 2lj0_A 22 ELELRDGDIVDVMEKCDDG 40 (65)
T ss_dssp BCCBCTTCEEEEEEECTTS
T ss_pred CcCCCCCCEEEEeEeCCCC
Confidence 3779999999998755443
No 129
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=26.93 E-value=52 Score=20.18 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=11.8
Q ss_pred ccceecCCEEEEee
Q 032182 46 SMPVRKDDEVQVVR 59 (146)
Q Consensus 46 s~~IkkGD~V~Vi~ 59 (146)
.+.+++||.|.|+.
T Consensus 23 eLsf~~Gd~i~v~~ 36 (70)
T 2vkn_A 23 EISFEQNEILQVSD 36 (70)
T ss_dssp BCCBCTTCEEEEEC
T ss_pred cccCCCCCEEEEEE
Confidence 46789999999985
No 130
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=26.92 E-value=38 Score=20.16 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.5
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (60)
T 1i07_A 17 ELSVMKDDVLEILDD 31 (60)
T ss_dssp BCCBCTTCEEEECGG
T ss_pred cccCCCCCEEEEEEc
Confidence 367899999999874
No 131
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=26.46 E-value=71 Score=21.91 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=20.2
Q ss_pred ceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 48 PVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
.++.||.|.| +|+.|+..++++.+.
T Consensus 75 ~~~vGd~V~v----------kV~~vd~~~~rI~ls 99 (115)
T 2khi_A 75 VVNVGDVVEV----------MVLDIDEERRRISLG 99 (115)
T ss_dssp TCCTTCEEEE----------EEEEEETTTTEEEEC
T ss_pred EECCCCEEEE----------EEEEEECCCCEEEEE
Confidence 4789999987 688899877777664
No 132
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=26.41 E-value=12 Score=20.68 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=15.6
Q ss_pred cCCCCcccceeeeccCCHHHHhhhCC
Q 032182 19 FTAPSSVRRILMSAPLSTDLRQKYNV 44 (146)
Q Consensus 19 ~~Ap~h~r~k~msa~Ls~eLr~ky~~ 44 (146)
||||+. +.-.||.+.-++||.
T Consensus 1 ~naPFe-----iGi~ls~~~y~~yG~ 21 (26)
T 2jsh_A 1 FNAPFD-----VGIKLSGAQYQQHGR 21 (26)
T ss_dssp CCSCSS-----TTGGGHHHHCSCSSS
T ss_pred CCCcee-----EeeEecHHHHHHHhH
Confidence 689998 566677777777763
No 133
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.27 E-value=38 Score=20.79 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=12.5
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 23 eLs~~~Gd~i~v~~~ 37 (70)
T 2da9_A 23 ELTIKEGDIVTLINK 37 (70)
T ss_dssp BCCCCTTEEEEEEEC
T ss_pred EeeEcCCCEEEEEEC
Confidence 367899999999864
No 134
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=26.02 E-value=48 Score=20.30 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=12.5
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (71)
T 1u5s_A 22 ELNFEKGETMEVIEK 36 (71)
T ss_dssp BCCCCSSCCEEEEEC
T ss_pred cccCCCCCEEEEEEC
Confidence 366899999999975
No 135
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=25.97 E-value=39 Score=21.56 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=12.9
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 41 eLs~~~Gd~i~v~~~~ 56 (86)
T 2oi3_A 41 DLSFQKGDQMVVLEES 56 (86)
T ss_dssp CCCCCTTCEEEEEEES
T ss_pred cCcCCCCCEEEEEEcC
Confidence 4678999999998743
No 136
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=25.96 E-value=75 Score=21.48 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=19.1
Q ss_pred ceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 48 PVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
.++.||.|.| +|+.|++...++.+.
T Consensus 75 ~~~vGd~V~v----------~V~~vd~~~~ki~LS 99 (109)
T 2khj_A 75 VLSVGDEVEA----------KFTGVDRKNRAISLS 99 (109)
T ss_dssp SCCTTCEEEE----------EEEEEETTTTEEEEE
T ss_pred ccCCCCEEEE----------EEEEEECCCCEEEEE
Confidence 4789999986 688888877676653
No 137
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A
Probab=25.66 E-value=50 Score=21.43 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=13.2
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 31 eLsf~~Gd~i~v~~~~ 46 (92)
T 1jqq_A 31 EVALKKGDLMAILSKK 46 (92)
T ss_dssp BCCBCTTCEEEEEEEE
T ss_pred CcCCCCCCEEEEEECC
Confidence 4678999999998754
No 138
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=25.56 E-value=47 Score=19.41 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (57)
T 1cka_A 17 DLPFKKGDILRIRDKP 32 (57)
T ss_dssp BCCBCTTCEEEEEECS
T ss_pred CCCCCCCCEEEEEEec
Confidence 3678999999999754
No 139
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=25.48 E-value=34 Score=27.29 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=19.2
Q ss_pred ceecCCEEEEeecCCCCeEeeEEEEEec
Q 032182 48 PVRKDDEVQVVRGTYKGREGKVVQVYRR 75 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~KGk~GkV~~V~~k 75 (146)
|++.||.|+| .|..|.|.+|.-.
T Consensus 129 pf~vGD~I~i-----~g~~G~V~~I~l~ 151 (286)
T 2vv5_A 129 PFRAGEYVDL-----GGVAGTVLSVQIF 151 (286)
T ss_dssp SSCTTCEEES-----SSCEEEEEEECSS
T ss_pred CccCCCEEEE-----CCEEEEEEEEEeE
Confidence 6899999998 2688999988764
No 140
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=25.45 E-value=47 Score=19.56 Aligned_cols=16 Identities=6% Similarity=0.164 Sum_probs=13.1
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 16 eLs~~~Gd~i~v~~~~ 31 (58)
T 1jo8_A 16 ELTFVENDKIINIEFV 31 (58)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcccCCCCEEEEEEec
Confidence 3678999999999853
No 141
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=25.44 E-value=1.2e+02 Score=24.05 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=24.9
Q ss_pred CcccceecCCEEEEeecC----CCCe-EeeEEEEEecCC
Q 032182 44 VRSMPVRKDDEVQVVRGT----YKGR-EGKVVQVYRRKW 77 (146)
Q Consensus 44 ~rs~~IkkGD~V~Vi~G~----~KGk-~GkV~~V~~k~~ 77 (146)
.+...|++||.| |.+|- .+|- .|+|.+|.+..+
T Consensus 165 ~~~~~i~~GD~V-vTSGl~gifP~GipVG~V~~V~~~~~ 202 (255)
T 2j5u_A 165 PYDMKFKKGQKV-VTSGLGGKFPAGIFIGTIEKVETDKM 202 (255)
T ss_dssp ETTSCCCTTCEE-EECCTTSSSCTTCEEEEEEEEEECTT
T ss_pred CCCCCCCCCCEE-EECCCCCcCCCCCEEEEEEEEeeCCC
Confidence 345689999986 46774 4676 699999998764
No 142
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=25.43 E-value=53 Score=20.08 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=12.4
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 23 eLs~~~Gd~i~v~~~ 37 (68)
T 1wxt_A 23 ELTVVQGEKLEVLDH 37 (68)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred cCCCCCCCEEEEEEc
Confidence 467899999999863
No 143
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=25.31 E-value=1e+02 Score=20.07 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=27.8
Q ss_pred eeeeccCCHHHHhhhCCcccceecCCEEEEeec-CCCCeEeeEEEEEecCCEEEEe
Q 032182 28 ILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG-TYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 28 k~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G-~~KGk~GkV~~V~~k~~~V~VE 82 (146)
|.|-+..|.|-- ..+++||.+...-- +..=-.++|++|+...+.+.|-
T Consensus 4 ~~l~~~~~~e~~-------~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~ 52 (77)
T 3pnw_C 4 KILESSIPMEYA-------KMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 52 (77)
T ss_dssp -------CHHHH-------TTCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEE
T ss_pred cccccccchhhc-------CCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEE
Confidence 445555554422 24689999999853 3233479999998876666664
No 144
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=25.22 E-value=45 Score=19.92 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=13.1
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 21 eLs~~~Gd~i~v~~~~ 36 (62)
T 1k4u_S 21 DLEFQEGDIILVLSKV 36 (62)
T ss_dssp BCCBCSSCEEEEEEES
T ss_pred CccCCCCCEEEEEEeC
Confidence 3678999999999753
No 145
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=24.72 E-value=60 Score=23.89 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=21.3
Q ss_pred cceecCCEEEEeecC----------CCCeEeeEEEEE
Q 032182 47 MPVRKDDEVQVVRGT----------YKGREGKVVQVY 73 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~----------~KGk~GkV~~V~ 73 (146)
-.+..||.|.|..-. -.|++|.|..+.
T Consensus 35 prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~ 71 (126)
T 2zzd_A 35 SKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLV 71 (126)
T ss_dssp CSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEE
T ss_pred CccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEe
Confidence 357999999997543 569999998776
No 146
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=24.68 E-value=78 Score=22.35 Aligned_cols=25 Identities=40% Similarity=0.409 Sum_probs=20.3
Q ss_pred ceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 48 PVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
.++.||.|.| +|+.|+...++|.+.
T Consensus 51 ~~~vGd~V~v----------kV~~vd~~~~kI~LS 75 (130)
T 2k4k_A 51 HLSVGDEVQV----------KVLAVDEEKGKISLS 75 (130)
T ss_dssp TCCTTCEEEE----------EEEEEETTTTEEEEE
T ss_pred cCCCCCEEEE----------EEEEEeCCCCEEEEE
Confidence 4789999987 689999877877764
No 147
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=24.36 E-value=50 Score=19.35 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (58)
T 1uti_A 17 ELGFRSGEVVEVLDSS 32 (58)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CCCCCCCCEEEEEEEC
Confidence 3678999999999753
No 148
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=24.07 E-value=52 Score=20.23 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=13.5
Q ss_pred ccceecCCEEEEeecCC
Q 032182 46 SMPVRKDDEVQVVRGTY 62 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~ 62 (146)
.+.+++||.|.|+.-.+
T Consensus 17 eLs~~~Gd~i~v~~~~~ 33 (65)
T 2nwm_A 17 ELTLQKGDIVYIHKEVD 33 (65)
T ss_dssp BCCBCTTCEEEEEECCT
T ss_pred ccCCcCCCEEEEEEecC
Confidence 36789999999987543
No 149
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.85 E-value=72 Score=20.31 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=12.6
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 33 eLsf~~Gd~i~v~~~ 47 (81)
T 1x6g_A 33 ELAFRKGDVVTILEA 47 (81)
T ss_dssp CCCBCTTCEEEEEEC
T ss_pred CCCCCCCCEEEEEec
Confidence 367899999999974
No 150
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A
Probab=23.71 E-value=52 Score=20.52 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=13.1
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 25 eLs~~~Gd~i~v~~~~ 40 (74)
T 1gbq_A 25 ELSFKRGDILKVLNEE 40 (74)
T ss_dssp BCCBCTTCEEECCBCS
T ss_pred eeeEcCCCEEEEeEec
Confidence 4678999999998744
No 151
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=23.63 E-value=51 Score=19.65 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=12.4
Q ss_pred cceecCCEEEEeecC
Q 032182 47 MPVRKDDEVQVVRGT 61 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~ 61 (146)
+.+++||.|.|+.-.
T Consensus 20 Ls~~~Gd~i~v~~~~ 34 (62)
T 2fpe_A 20 LELEVDDPLLVELQA 34 (62)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred CcCCCCCEEEEEEec
Confidence 668999999998644
No 152
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=23.23 E-value=1.6e+02 Score=19.31 Aligned_cols=36 Identities=11% Similarity=-0.062 Sum_probs=25.8
Q ss_pred cceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 47 MPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
..+..||.|...==+=.=..|+|++|+...++-+|.
T Consensus 12 ~~f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~ 47 (66)
T 2eqj_A 12 CKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFII 47 (66)
T ss_dssp CCSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred ccccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEE
Confidence 357899999776522222479999999988877764
No 153
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=23.15 E-value=57 Score=19.05 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (58)
T 2drm_A 19 ELTFKEGDTIIVHQKD 34 (58)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcCCCCCCEEEEEEec
Confidence 3678999999998754
No 154
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=23.11 E-value=63 Score=19.55 Aligned_cols=14 Identities=7% Similarity=0.294 Sum_probs=12.1
Q ss_pred cceecCCEEEEeec
Q 032182 47 MPVRKDDEVQVVRG 60 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G 60 (146)
+.+++||.+.|+..
T Consensus 25 Lsf~~Gd~i~v~~~ 38 (67)
T 3rnj_A 25 LSFKEGDLITLLVP 38 (67)
T ss_dssp CCBCTTCEEEECSS
T ss_pred ccCCCCCEEEEeec
Confidence 67899999999965
No 155
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=23.04 E-value=55 Score=19.58 Aligned_cols=16 Identities=6% Similarity=0.337 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 21 eLs~~~Gd~i~v~~~~ 36 (62)
T 1uj0_A 21 ELTFKHGELITVLDDS 36 (62)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcCCCCCCEEEEEEeC
Confidence 3678999999999743
No 156
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.96 E-value=74 Score=19.91 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=13.1
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 30 eLsf~~Gd~i~v~~~~ 45 (76)
T 2csi_A 30 ELTFCTGDIITVFGEI 45 (76)
T ss_dssp SCCCCTTCEEEEESSC
T ss_pred cccCCCCCEEEEeEec
Confidence 4678999999999743
No 157
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=22.94 E-value=56 Score=19.07 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 18 eLs~~~Gd~i~v~~~~ 33 (58)
T 2vwf_A 18 ELGFRRGDFIHVMDNS 33 (58)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcCCCCCCEEEEEEcC
Confidence 3678999999999753
No 158
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=22.91 E-value=55 Score=19.89 Aligned_cols=16 Identities=6% Similarity=0.285 Sum_probs=13.3
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 18 eLs~~~Gd~i~v~~~~ 33 (67)
T 1gl5_A 18 DLRLERGQEYIILEKN 33 (67)
T ss_dssp BCCBCTTCEEEEEECS
T ss_pred eecCCcCCEEEEEEcc
Confidence 3678999999999864
No 159
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=22.85 E-value=86 Score=18.66 Aligned_cols=34 Identities=12% Similarity=-0.015 Sum_probs=22.4
Q ss_pred eecCCEEEEeec-CCCCeEeeEEEEEecCCEEEEe
Q 032182 49 VRKDDEVQVVRG-TYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 49 IkkGD~V~Vi~G-~~KGk~GkV~~V~~k~~~V~VE 82 (146)
.++||.+...-- +..=-.++|++++...+.+.|.
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~ 36 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 36 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEE
Confidence 478999998853 3333479999998766666654
No 160
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=22.74 E-value=27 Score=21.82 Aligned_cols=14 Identities=7% Similarity=0.095 Sum_probs=11.8
Q ss_pred ccceecCCEEEEee
Q 032182 46 SMPVRKDDEVQVVR 59 (146)
Q Consensus 46 s~~IkkGD~V~Vi~ 59 (146)
.+.+++||.|.|+.
T Consensus 26 eLsf~~Gd~i~v~~ 39 (72)
T 1ugv_A 26 ELSFTAGTVFDNVH 39 (72)
T ss_dssp BCCBCTTCEEBSCC
T ss_pred EeCCcCCCEEEEEE
Confidence 36789999999885
No 161
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.72 E-value=61 Score=20.40 Aligned_cols=16 Identities=6% Similarity=0.385 Sum_probs=13.2
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 29 eLs~~~Gd~i~v~~~~ 44 (78)
T 2dl5_A 29 ELTIEEHEVLEVIEDG 44 (78)
T ss_dssp BCCBCSSEEEEEEECC
T ss_pred CCCCCCCCEEEEEecc
Confidence 3678999999999754
No 162
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=22.62 E-value=54 Score=20.18 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=12.8
Q ss_pred cceecCCEEEEeecCC
Q 032182 47 MPVRKDDEVQVVRGTY 62 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~~ 62 (146)
+.+++||.|.|+.-.+
T Consensus 23 Ls~~~Gd~i~v~~~~~ 38 (71)
T 2fpf_A 23 LELEVDDPLLVELQAE 38 (71)
T ss_dssp CCBCTTCEEEEEEECT
T ss_pred ccCcCCcEEEEeEecC
Confidence 6789999999986443
No 163
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=22.60 E-value=56 Score=21.63 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=12.8
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 45 ELsf~~GD~I~Vl~~ 59 (89)
T 2rf0_A 45 ELTLRRGDRVQVLSQ 59 (89)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred ccccCCCCEEEEEec
Confidence 467899999999975
No 164
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=22.51 E-value=1.2e+02 Score=22.47 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=25.4
Q ss_pred hhCCcccceecCCEEEEeecC----CCCe-EeeEEEEEecCC
Q 032182 41 KYNVRSMPVRKDDEVQVVRGT----YKGR-EGKVVQVYRRKW 77 (146)
Q Consensus 41 ky~~rs~~IkkGD~V~Vi~G~----~KGk-~GkV~~V~~k~~ 77 (146)
.|=.+...|++||.| |.+|- .+|- .|+|.+|.+..+
T Consensus 101 ~~i~~~~~i~~GD~v-vTSGl~g~fP~GipVG~V~~v~~~~~ 141 (172)
T 2qf4_A 101 SQLNSNSDISAGDKV-TTGGLGNFNVADIPVGEVVATTHSTD 141 (172)
T ss_dssp ECCSCCCCCCTTCEE-EEECCSSSCCEEEEEEEEEEEESTTC
T ss_pred EECCCCCCCCCCCEE-EECCCCCcCCCCCEEEEEEEEecCCC
Confidence 343455689999986 46774 4465 599999988754
No 165
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=22.43 E-value=56 Score=19.74 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 22 eLs~~~Gd~i~v~~~~ 37 (65)
T 2j05_A 22 EISFLKGDMFIVHNEL 37 (65)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred cCcCCCCCEEEEeEec
Confidence 3678999999998754
No 166
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=22.40 E-value=57 Score=19.39 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=13.2
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (65)
T 2oaw_A 17 EVTMKKGDILTLLNST 32 (65)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CCCCCCCCEEEEEEcC
Confidence 3678999999999853
No 167
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=22.12 E-value=60 Score=25.77 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=21.3
Q ss_pred cceecCCEEEEeec----------CCCCeEeeEEEEE
Q 032182 47 MPVRKDDEVQVVRG----------TYKGREGKVVQVY 73 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G----------~~KGk~GkV~~V~ 73 (146)
-++..||.|.|..- --.|++|.|..+.
T Consensus 129 ~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 165 (219)
T 3qyh_B 129 ARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDH 165 (219)
T ss_dssp CCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEE
T ss_pred CCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEe
Confidence 46899999999643 3569999998775
No 168
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=22.07 E-value=47 Score=19.51 Aligned_cols=15 Identities=13% Similarity=0.476 Sum_probs=12.7
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 18 eLs~~~Gd~i~v~~~ 32 (60)
T 2v1q_A 18 ELTIKSGDKVYILDD 32 (60)
T ss_dssp BCCBCTTCEEEEEES
T ss_pred CccCCCCCEEEEEeC
Confidence 367899999999974
No 169
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=22.03 E-value=59 Score=19.29 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=13.2
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (61)
T 1y0m_A 19 ELTFTKSAIIQNVEKQ 34 (61)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcCCcCCCEEEEEEec
Confidence 3678999999999754
No 170
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=21.76 E-value=58 Score=19.11 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=12.9
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 18 eLs~~~Gd~i~v~~~~ 33 (58)
T 1zx6_A 18 DLGLKPGDKVQLLEKL 33 (58)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred CccCCCCCEEEEEEec
Confidence 3678999999998653
No 171
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=21.32 E-value=1.2e+02 Score=20.79 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=30.0
Q ss_pred cCCEEEEeecCCCCeEeeEEEEEecCCEEEEeee
Q 032182 51 KDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERI 84 (146)
Q Consensus 51 kGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgi 84 (146)
.|-+|+|....-+-..|.|..|||-...|+..+.
T Consensus 16 i~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~ 49 (86)
T 1y96_A 16 IYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF 49 (86)
T ss_dssp TTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE
T ss_pred cCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec
Confidence 5789999999988889999999999988888765
No 172
>1gxi_E Photosystem I reaction center subunit IV; photosynthesis, PSAE SUB-UNIT, thylakoid; NMR {Synechocystis SP} SCOP: b.34.4.2 PDB: 1pse_A 1psf_A
Probab=21.30 E-value=30 Score=23.39 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=26.5
Q ss_pred eecCCEEEEeecC--CCCeEeeEEEEEecC--CEEEEe
Q 032182 49 VRKDDEVQVVRGT--YKGREGKVVQVYRRK--WVIHIE 82 (146)
Q Consensus 49 IkkGD~V~Vi~G~--~KGk~GkV~~V~~k~--~~V~VE 82 (146)
|.+||.|.|++=. +-...|+|..||... +-|+|.
T Consensus 2 i~RGskVrIlR~ESYWyn~vGtVasVD~sgi~YPVvVR 39 (73)
T 1gxi_E 2 LNRGDKVRIKRTESYWYGDVGTVASVEKSGILYPVIVR 39 (73)
T ss_dssp CCTTCCEEECCSSSTTTTEEECBCCTTTCCSSSCEEEC
T ss_pred ccCCCEEEEccccceeecCcceEEEEcCCCCEeeEEEE
Confidence 6899999999865 567789999999853 445553
No 173
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=21.30 E-value=62 Score=19.33 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=12.7
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 17 ELTIRVGEIIRNVKK 31 (62)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCcCCCEEEEEEe
Confidence 367899999999975
No 174
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=21.30 E-value=90 Score=23.64 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=19.6
Q ss_pred ceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 48 PVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
.++.||.|.| +|++|++.+++|.+.
T Consensus 61 ~~~vGd~V~V----------kVl~vD~~~~rI~LS 85 (182)
T 1kl9_A 61 LIRIGRNECV----------VVIRVDKEKGYIDLS 85 (182)
T ss_dssp --CTTCEEEE----------EEEEEETTTTEEEEE
T ss_pred hcCCCCEEEE----------EEEEEECCCCEEEEE
Confidence 3789999988 699999988887764
No 175
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=21.28 E-value=1.3e+02 Score=19.93 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=17.0
Q ss_pred ceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 48 PVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
|+..||++.+ .++|+++..+.+.+.++
T Consensus 87 Pv~~Gd~l~~--------~~~v~~~~~~~~~v~~~ 113 (134)
T 1iq6_A 87 PVFVGDEVTA--------EVEVTALREDKPIATLT 113 (134)
T ss_dssp CCBTTCEEEE--------EEEEEEECSSSSEEEEE
T ss_pred CCCCCCEEEE--------EEEEEEEECCCCEEEEE
Confidence 6889998877 45566555444444444
No 176
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=21.23 E-value=67 Score=25.69 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=21.2
Q ss_pred cceecCCEEEEeec----------CCCCeEeeEEEEE
Q 032182 47 MPVRKDDEVQVVRG----------TYKGREGKVVQVY 73 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G----------~~KGk~GkV~~V~ 73 (146)
-++..||.|.|..- --.|++|.|..+.
T Consensus 140 ~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 176 (229)
T 3hht_B 140 PRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVY 176 (229)
T ss_dssp CSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEE
T ss_pred CCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEe
Confidence 45899999999543 3569999998874
No 177
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=21.23 E-value=60 Score=19.71 Aligned_cols=19 Identities=11% Similarity=0.317 Sum_probs=14.5
Q ss_pred ccceecCCEEEEeecCCCC
Q 032182 46 SMPVRKDDEVQVVRGTYKG 64 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~KG 64 (146)
.+.+++||.|.|+.-.+.|
T Consensus 29 eLs~~~Gd~i~v~~~~~~~ 47 (72)
T 4glm_A 29 ELDFEVGDKIRILATLEDG 47 (72)
T ss_dssp BCCBCTTCEEEEEEECSTT
T ss_pred cCCCCCCCEEEEEEccCCC
Confidence 3678999999999755433
No 178
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=21.18 E-value=33 Score=26.18 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=14.1
Q ss_pred CCcccceecCCEEEEe
Q 032182 43 NVRSMPVRKDDEVQVV 58 (146)
Q Consensus 43 ~~rs~~IkkGD~V~Vi 58 (146)
.+|++-++.||.|+|-
T Consensus 58 ~vk~LeLRiGD~VKVd 73 (153)
T 2fhd_A 58 QIKRFFLKKGDVVQST 73 (153)
T ss_dssp SEEESCCCTTCEEEET
T ss_pred hceeeeeecCCEEEEC
Confidence 4677899999999997
No 179
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.14 E-value=91 Score=20.52 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=11.8
Q ss_pred ccceecCCEEEEee
Q 032182 46 SMPVRKDDEVQVVR 59 (146)
Q Consensus 46 s~~IkkGD~V~Vi~ 59 (146)
.+.+++||.|.|+.
T Consensus 41 eLsf~~Gd~i~vl~ 54 (97)
T 2csq_A 41 ELPFKEGQIIKVYG 54 (97)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred ccCCCCCCEEEEEE
Confidence 46789999999983
No 180
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=21.08 E-value=63 Score=19.76 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 19 eLsf~~Gd~i~v~~~~ 34 (65)
T 1b07_A 19 DLPFKKGDILRIRDKP 34 (65)
T ss_dssp BCCBCTTCEEEEEECS
T ss_pred ccCCcCCCEEEEEEec
Confidence 3668999999999754
No 181
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=21.04 E-value=63 Score=19.10 Aligned_cols=17 Identities=6% Similarity=0.327 Sum_probs=13.4
Q ss_pred ccceecCCEEEEeecCC
Q 032182 46 SMPVRKDDEVQVVRGTY 62 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~ 62 (146)
.+.+++||.|.|+.-.+
T Consensus 21 eLs~~~Gd~i~v~~~~~ 37 (60)
T 2xmf_A 21 ELSFNANDIIDIIKEDP 37 (60)
T ss_dssp BCCBCTTCEEEEEEECT
T ss_pred CcCCCCCCEEEEEEecC
Confidence 36789999999987543
No 182
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=20.98 E-value=85 Score=20.19 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=12.7
Q ss_pred ccceecCCEEEEeec
Q 032182 46 SMPVRKDDEVQVVRG 60 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G 60 (146)
.+.+++||.|.|+.-
T Consensus 33 eLs~~~Gd~i~v~~~ 47 (91)
T 1wx6_A 33 ELNFEKGETMEVIEK 47 (91)
T ss_dssp BCCCCTTCEEEEEEC
T ss_pred cccCCCCCEEEEEEC
Confidence 367899999999975
No 183
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A
Probab=20.97 E-value=92 Score=19.72 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=12.0
Q ss_pred ccceecCCEEEEee
Q 032182 46 SMPVRKDDEVQVVR 59 (146)
Q Consensus 46 s~~IkkGD~V~Vi~ 59 (146)
.+.+++||.|.|+.
T Consensus 21 eLs~~~Gd~I~V~~ 34 (83)
T 3i5r_A 21 DIDLHLGDILTVNK 34 (83)
T ss_dssp BCCBCTTCEEEEEH
T ss_pred ccccCCCCEEEEee
Confidence 37799999999994
No 184
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=20.80 E-value=72 Score=20.23 Aligned_cols=17 Identities=12% Similarity=0.423 Sum_probs=13.8
Q ss_pred cceecCCEEEEeecCCC
Q 032182 47 MPVRKDDEVQVVRGTYK 63 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~~K 63 (146)
+.+++||.|.|+.-.+-
T Consensus 27 Lsf~~Gd~i~v~~~~~~ 43 (80)
T 2i0n_A 27 LPFKRNDIITITFKDQE 43 (80)
T ss_dssp CCBCSSEEEEEEEESSS
T ss_pred cCCCCCCEEEEEEecCC
Confidence 66899999999976543
No 185
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=20.71 E-value=1.7e+02 Score=18.44 Aligned_cols=36 Identities=3% Similarity=-0.018 Sum_probs=26.0
Q ss_pred ccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEE
Q 032182 46 SMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHI 81 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~V 81 (146)
.-.++.|..++++--...--..+|+.|+...+++.|
T Consensus 10 ~~~F~vGmkLEa~d~~~p~~~AtV~~v~~~~~~~~V 45 (69)
T 3sd4_A 10 GISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLI 45 (69)
T ss_dssp TCCCSTTCEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CCCcCCCCEEEEEECCCCccccEEEEEeccCCEEEE
Confidence 345799999999854433367899999766666644
No 186
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=20.68 E-value=65 Score=18.64 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=13.5
Q ss_pred cceecCCEEEEeecCCC
Q 032182 47 MPVRKDDEVQVVRGTYK 63 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~~K 63 (146)
+.+++||.|.|+.-.+.
T Consensus 18 Ls~~~Gd~i~v~~~~~~ 34 (58)
T 4e6r_A 18 LSLVXGSRVTVMEXCSD 34 (58)
T ss_dssp CCBCTTCEEEEEEECTT
T ss_pred eeEeCCCEEEEeEcCCC
Confidence 67899999999865433
No 187
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=20.67 E-value=61 Score=21.62 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=15.8
Q ss_pred CCcccceecCCEEEEeecCCC
Q 032182 43 NVRSMPVRKDDEVQVVRGTYK 63 (146)
Q Consensus 43 ~~rs~~IkkGD~V~Vi~G~~K 63 (146)
+...+.++.||.|+|+.=.+-
T Consensus 20 ~~~ei~lk~Gd~VeVl~k~~~ 40 (71)
T 1v1c_A 20 EQDAITLREGQYVEVLDAAHP 40 (71)
T ss_dssp CTTBCCBCTTCEEEEEEEEET
T ss_pred CcceeeecCCCEEEEEEcCCC
Confidence 445688999999999864443
No 188
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=20.64 E-value=1.3e+02 Score=21.97 Aligned_cols=21 Identities=48% Similarity=0.653 Sum_probs=15.2
Q ss_pred ceecCCEEEEeecCCCCeEeeEEEEEecC
Q 032182 48 PVRKDDEVQVVRGTYKGREGKVVQVYRRK 76 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~ 76 (146)
|+..||++.+ .++|+.+++..
T Consensus 115 PV~~GDtl~~--------~~~V~~~~~~~ 135 (159)
T 3k67_A 115 PVRIGDVVRV--------EGVVSGVEKNR 135 (159)
T ss_dssp CCCTTCEEEE--------EEEEEEEETTE
T ss_pred CcCCCCEEEE--------EEEEEEEECCE
Confidence 7899999987 45666665543
No 189
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=20.56 E-value=63 Score=20.61 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=13.6
Q ss_pred ccceecCCEEEEeecCC
Q 032182 46 SMPVRKDDEVQVVRGTY 62 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~ 62 (146)
.+.+++||.|.|+.-.+
T Consensus 21 eLs~~~Gd~i~vl~~~~ 37 (79)
T 3cqt_A 21 DLSFHKGEKFQILNSSE 37 (79)
T ss_dssp BCCBCTTCEEEEEECTT
T ss_pred cCCCCCCCEEEEEEecC
Confidence 46789999999997543
No 190
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=20.36 E-value=63 Score=19.62 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=13.5
Q ss_pred ccceecCCEEEEeecCC
Q 032182 46 SMPVRKDDEVQVVRGTY 62 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~ 62 (146)
.+.+++||.|.|+.-.+
T Consensus 22 eLs~~~Gd~i~v~~~~~ 38 (69)
T 4esr_A 22 ELTIHRGDIIRVFFKDN 38 (69)
T ss_dssp BCCBCTTCEEEEEEECS
T ss_pred cCCCCCCCEEEEEEecC
Confidence 46799999999997543
No 191
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=20.33 E-value=98 Score=23.22 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=20.7
Q ss_pred ceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182 48 PVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE 82 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE 82 (146)
.++.||.|.| +|+.|++.+++|.+.
T Consensus 61 ~~~vGd~V~v----------kVl~vd~~~~~I~LS 85 (175)
T 2a19_A 61 LIRVGKNDVA----------VVLRVDKEKGYIDLS 85 (175)
T ss_dssp CCCTTSEEEE----------EEEEEETTTTEEEEE
T ss_pred cCCCCCEEEE----------EEEEEECCCCeEEEE
Confidence 4789999988 689999988887764
No 192
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=20.24 E-value=60 Score=20.38 Aligned_cols=17 Identities=0% Similarity=0.175 Sum_probs=13.7
Q ss_pred ccceecCCEEEEeecCC
Q 032182 46 SMPVRKDDEVQVVRGTY 62 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~~ 62 (146)
.+.+++||.|.|+.-.+
T Consensus 23 eLs~~~Gd~i~v~~~~~ 39 (80)
T 1ue9_A 23 QLSLAPGQLILILKKNT 39 (80)
T ss_dssp BCCCCTTCEEEEEEECS
T ss_pred CCCCCCCCEEEEEEecC
Confidence 36789999999997643
No 193
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=20.19 E-value=46 Score=29.75 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=11.0
Q ss_pred ceecCCEEEEeecCCCCeEee
Q 032182 48 PVRKDDEVQVVRGTYKGREGK 68 (146)
Q Consensus 48 ~IkkGD~V~Vi~G~~KGk~Gk 68 (146)
-++.||.|.|++|..-|..|.
T Consensus 496 ~~~~GD~vVi~~G~p~g~~G~ 516 (526)
T 4drs_A 496 LIESGDFAIAVHGVKESCPGS 516 (526)
T ss_dssp SCCTTCEEEEEC---------
T ss_pred CCCCcCEEEEEeccCCCCCCc
Confidence 379999999999998888773
No 194
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=20.16 E-value=1.7e+02 Score=19.68 Aligned_cols=35 Identities=3% Similarity=0.003 Sum_probs=27.4
Q ss_pred cceecCCEEEEeecCCCCeEeeEEEEEecCCEEEE
Q 032182 47 MPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHI 81 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~V 81 (146)
..++.|..|+++--...--..+|+.|+....++.|
T Consensus 18 ~~F~vGmkLEA~D~~~~~~~a~i~~v~~~~~~v~V 52 (88)
T 2eqm_A 18 ITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLV 52 (88)
T ss_dssp CCCCSSCEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CcCCCCCEEEEEcCCCCeeEEEEEEEeccCCEEEE
Confidence 45789999999975555578999999987777655
No 195
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=20.14 E-value=69 Score=18.76 Aligned_cols=16 Identities=6% Similarity=0.125 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeecC
Q 032182 46 SMPVRKDDEVQVVRGT 61 (146)
Q Consensus 46 s~~IkkGD~V~Vi~G~ 61 (146)
.+.+++||.|.|+.-.
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (58)
T 1zlm_A 19 ELYFEEGDIIYITDMS 34 (58)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CccCCCCCEEEEEEeC
Confidence 3678999999998753
No 196
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=20.09 E-value=68 Score=19.08 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=13.7
Q ss_pred cceecCCEEEEeecCCC
Q 032182 47 MPVRKDDEVQVVRGTYK 63 (146)
Q Consensus 47 ~~IkkGD~V~Vi~G~~K 63 (146)
+.+++||.|.|+.-.+-
T Consensus 26 Ls~~~Gd~i~v~~~~~~ 42 (65)
T 3ulr_B 26 ISFDPDDIITNIEMIDD 42 (65)
T ss_dssp CCBCTTCEEEEEECCSS
T ss_pred eeEecCCEEEEEEecCC
Confidence 67899999999876543
Done!