RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032182
         (146 letters)



>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 119

 Score =  129 bits (325), Expect = 3e-40
 Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 8   SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREG 67
           S    K RK+   AP   R   + A LS DLR++Y  R++ V   D V+V+RG + G EG
Sbjct: 1   SKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEG 60

Query: 68  KVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDK-DRKSLLDRKAK 123
           +V+ V   K VIH+E +T EK +G  V   ++ S V +T L L+   R++ L+ +  
Sbjct: 61  EVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDD 117


>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
          thermophilus [TaxId: 274]}
          Length = 101

 Score = 37.8 bits (88), Expect = 6e-05
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 47 MPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITR 86
          M V+K D V V  G YKGR GKV +V  +K+ + +E +  
Sbjct: 4  MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNI 43


>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
          {Deinococcus radiodurans [TaxId: 1299]}
          Length = 110

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 41 KYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITR 86
           ++   +  +K D V V+ G +KG+ GKV+    R   + +E +  
Sbjct: 5  SHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNV 50


>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
          {Escherichia coli [TaxId: 562]}
          Length = 99

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 49 VRKDDEVQVVRGTYKGREGKVVQVYRRKWVI 79
          +R+DDEV V+ G  KG+ GKV  V     VI
Sbjct: 2  IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVI 32


>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 62

 Score = 25.0 bits (55), Expect = 1.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 53 DEVQVVRGTYKGREGKVVQV 72
          D V+V+ G ++G  G +V+V
Sbjct: 15 DHVKVIAGRFEGDTGLIVRV 34


>d1vhka1 b.122.1.2 (A:2-73) Hypothetical protein YqeU {Bacillus
          subtilis [TaxId: 1423]}
          Length = 72

 Score = 23.7 bits (51), Expect = 4.5
 Identities = 7/47 (14%), Positives = 17/47 (36%)

Query: 41 KYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITRE 87
           + V  M + + D++          + ++  V + K    +   T E
Sbjct: 26 HHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNE 72


>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
           {Plasmodium falciparum [TaxId: 5833]}
          Length = 259

 Score = 23.9 bits (50), Expect = 9.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 84  ITREKVNGSTVNVGINPSKVVI 105
           + + ++ G+ VNVG  P K++ 
Sbjct: 30  VEKSRLGGTCVNVGCVPKKIMF 51


>d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange
           factor GrpE {Escherichia coli [TaxId: 562]}
          Length = 59

 Score = 22.6 bits (49), Expect = 9.4
 Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 14/42 (33%)

Query: 66  EGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITK 107
            G V+ + ++ + ++  R  R              + V + K
Sbjct: 29  PGNVLGIMQKGYTLN-GRTIR-------------AAMVTVAK 56


>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal
          domain {Escherichia coli [TaxId: 562]}
          Length = 247

 Score = 23.8 bits (51), Expect = 9.5
 Identities = 6/17 (35%), Positives = 8/17 (47%)

Query: 82 ERITREKVNGSTVNVGI 98
           R   E   G+  NVG+
Sbjct: 11 RRALFEMRKGAVGNVGV 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 519,169
Number of extensions: 22735
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 22
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.7 bits)