Query 032184
Match_columns 145
No_of_seqs 105 out of 631
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 17:22:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eh2_A Protein transport prote 100.0 3.5E-42 1.2E-46 310.2 11.2 137 7-145 15-165 (766)
2 3efo_B SEC24 related gene fami 100.0 2.9E-42 9.9E-47 310.9 10.6 137 7-145 19-169 (770)
3 1pcx_A Protein transport prote 100.0 6E-37 2E-41 277.5 8.2 120 24-145 50-181 (810)
4 1m2v_B SEC24, protein transpor 100.0 1.3E-36 4.4E-41 278.2 8.2 120 24-145 166-297 (926)
5 3eh1_A Protein transport prote 100.0 1.4E-34 4.8E-39 260.3 6.9 108 31-145 34-154 (751)
6 2nut_A Protein transport prote 100.0 2.3E-31 7.7E-36 239.9 4.0 113 25-144 6-129 (769)
7 1m2o_A SEC23, protein transpor 100.0 2.8E-29 9.5E-34 226.3 5.4 103 34-143 6-117 (768)
8 2yrc_A Protein transport prote 99.5 1.4E-14 5E-19 92.1 2.8 34 85-118 6-41 (59)
9 1gh9_A 8.3 kDa protein (gene M 84.9 0.51 1.7E-05 30.3 2.2 27 86-118 2-28 (71)
10 1pft_A TFIIB, PFTFIIBN; N-term 81.2 3.5 0.00012 23.8 4.8 29 87-118 4-32 (50)
11 2a20_A Regulating synaptic mem 80.8 0.29 1E-05 30.5 -0.2 26 88-117 33-58 (62)
12 2hgo_A CASSIICOLIN; toxin, dis 79.0 0.87 3E-05 23.3 1.3 26 90-116 2-27 (27)
13 4gat_A Nitrogen regulatory pro 69.2 1.3 4.4E-05 28.0 0.5 32 86-118 7-38 (66)
14 2csz_A Synaptotagmin-like prot 65.8 2.3 7.8E-05 27.6 1.3 29 90-118 44-72 (76)
15 2vut_I AREA, nitrogen regulato 62.4 1.3 4.6E-05 25.5 -0.3 30 88-118 1-30 (43)
16 1vq8_Z 50S ribosomal protein L 60.5 7.3 0.00025 25.4 3.0 28 87-118 26-53 (83)
17 2zet_C Melanophilin; complex, 56.8 2.6 8.8E-05 30.7 0.3 31 88-118 85-116 (153)
18 3j20_Y 30S ribosomal protein S 56.4 9.5 0.00032 22.4 2.7 25 88-118 19-45 (50)
19 1zbd_B Rabphilin-3A; G protein 55.2 6 0.00021 28.0 2.0 31 88-118 72-106 (134)
20 1yuz_A Nigerythrin; rubrythrin 55.0 4 0.00014 30.8 1.1 25 87-118 170-194 (202)
21 1x0t_A Ribonuclease P protein 54.4 6.5 0.00022 27.2 2.1 30 89-118 66-102 (120)
22 2avu_E Flagellar transcription 53.8 2.8 9.5E-05 31.8 0.0 31 85-118 131-162 (192)
23 6rxn_A Rubredoxin; electron tr 53.5 2 6.8E-05 25.2 -0.6 9 110-118 30-38 (46)
24 4hc9_A Trans-acting T-cell-spe 53.2 2.3 8E-05 29.5 -0.4 31 87-118 4-34 (115)
25 1e8j_A Rubredoxin; iron-sulfur 49.4 2.2 7.6E-05 25.5 -0.9 8 111-118 37-44 (52)
26 1dx8_A Rubredoxin; electron tr 48.3 2.9 9.9E-05 26.5 -0.5 32 87-118 6-48 (70)
27 1s24_A Rubredoxin 2; electron 48.2 2.7 9.3E-05 27.9 -0.7 33 86-118 33-76 (87)
28 2k3r_A Ribonuclease P protein 46.7 8.1 0.00028 26.9 1.5 30 89-118 61-97 (123)
29 1gnf_A Transcription factor GA 46.5 1.9 6.5E-05 25.2 -1.5 31 87-118 3-33 (46)
30 1yk4_A Rubredoxin, RD; electro 46.2 2.9 0.0001 24.9 -0.7 9 110-118 35-43 (52)
31 2v3b_B Rubredoxin 2, rubredoxi 43.0 3.4 0.00012 25.0 -0.8 9 110-118 36-44 (55)
32 4rxn_A Rubredoxin; electron tr 41.9 4.1 0.00014 24.6 -0.5 9 110-118 36-44 (54)
33 2kvh_A Zinc finger and BTB dom 41.7 9.7 0.00033 17.4 1.0 10 109-118 2-11 (27)
34 2kn9_A Rubredoxin; metalloprot 41.0 3.6 0.00012 27.0 -1.0 33 86-118 25-68 (81)
35 2elx_A Zinc finger protein 406 39.6 12 0.00042 18.1 1.2 11 108-118 5-15 (35)
36 2kdx_A HYPA, hydrogenase/ureas 37.7 11 0.00038 25.6 1.1 27 87-119 72-99 (119)
37 1m3v_A FLIN4, fusion of the LI 37.4 20 0.00067 24.1 2.3 10 89-98 33-42 (122)
38 1srk_A Zinc finger protein ZFP 37.3 15 0.0005 17.9 1.3 11 108-118 5-15 (35)
39 1twf_I B12.6, DNA-directed RNA 35.9 17 0.00058 25.0 1.8 31 88-118 4-34 (122)
40 1a7i_A QCRP2 (LIM1); LIM domai 35.5 30 0.001 21.2 2.9 31 88-118 7-42 (81)
41 2gmg_A Hypothetical protein PF 35.3 7.1 0.00024 26.8 -0.2 27 87-118 66-92 (105)
42 2l4z_A DNA endonuclease RBBP8, 35.3 27 0.00093 23.7 2.8 33 86-118 59-96 (123)
43 2kvf_A Zinc finger and BTB dom 33.9 15 0.00051 16.7 1.0 9 110-118 3-11 (28)
44 2m0f_A Zinc finger and BTB dom 33.7 14 0.00048 16.7 0.8 9 110-118 2-10 (29)
45 2elq_A Zinc finger protein 406 33.6 17 0.00057 17.9 1.2 11 108-118 7-17 (36)
46 1vd4_A Transcription initiatio 33.2 16 0.00055 21.1 1.2 33 86-118 12-47 (62)
47 1rfh_A RAS association (ralgds 33.1 31 0.0011 20.5 2.5 25 86-118 20-44 (59)
48 2lvu_A Zinc finger and BTB dom 39.1 9.2 0.00031 17.3 0.0 9 110-118 2-10 (26)
49 2elt_A Zinc finger protein 406 32.7 18 0.00061 17.6 1.2 11 108-118 7-17 (36)
50 2iyb_E Testin, TESS, TES; LIM 32.4 55 0.0019 19.1 3.6 30 89-118 3-40 (65)
51 1iml_A CRIP, cysteine rich int 32.3 28 0.00094 21.1 2.2 26 88-114 27-52 (76)
52 2els_A Zinc finger protein 406 32.0 18 0.00063 17.7 1.2 11 108-118 7-17 (36)
53 1rik_A E6APC1 peptide; E6-bind 31.6 17 0.0006 16.5 1.0 9 110-118 2-10 (29)
54 2kvg_A Zinc finger and BTB dom 31.5 16 0.00054 16.8 0.8 10 109-118 2-11 (27)
55 2elm_A Zinc finger protein 406 31.5 22 0.00075 17.8 1.4 11 108-118 7-17 (37)
56 2elp_A Zinc finger protein 406 30.7 21 0.00071 17.6 1.2 11 108-118 7-17 (37)
57 2dj7_A Actin-binding LIM prote 30.5 30 0.001 21.5 2.2 33 86-118 13-50 (80)
58 2elv_A Zinc finger protein 406 30.4 22 0.00075 17.4 1.3 11 108-118 7-17 (36)
59 2d8z_A Four and A half LIM dom 30.3 43 0.0015 19.7 2.9 32 86-118 3-39 (70)
60 3dfx_A Trans-acting T-cell-spe 30.1 3.7 0.00013 25.6 -2.2 32 86-118 5-36 (63)
61 2lri_C Autoimmune regulator; Z 29.4 9.8 0.00033 23.5 -0.3 33 86-118 22-58 (66)
62 2m0d_A Zinc finger and BTB dom 29.2 19 0.00066 16.3 0.9 10 109-118 2-11 (30)
63 2k4x_A 30S ribosomal protein S 29.1 29 0.00098 20.7 1.8 28 88-119 18-45 (55)
64 2js4_A UPF0434 protein BB2007; 29.1 50 0.0017 20.6 3.0 29 86-118 6-34 (70)
65 2fnf_X Putative RAS effector N 28.7 29 0.00099 21.6 1.9 25 86-118 33-57 (72)
66 1dl6_A Transcription factor II 28.6 23 0.0008 21.2 1.3 28 88-118 11-38 (58)
67 1j2o_A FLIN2, fusion of rhombo 28.1 42 0.0014 22.1 2.7 30 89-118 4-38 (114)
68 3iuf_A Zinc finger protein UBI 27.9 23 0.00077 19.2 1.1 12 107-118 4-15 (48)
69 2el5_A Zinc finger protein 268 27.7 25 0.00085 17.9 1.2 11 108-118 8-18 (42)
70 1x4l_A Skeletal muscle LIM-pro 27.6 40 0.0014 20.0 2.4 32 87-118 4-43 (72)
71 2ept_A Zinc finger protein 32; 27.4 26 0.00089 17.7 1.3 11 108-118 8-18 (41)
72 1x61_A Thyroid receptor intera 27.1 43 0.0015 19.8 2.5 32 87-118 4-41 (72)
73 2epc_A Zinc finger protein 32; 26.5 27 0.00093 17.6 1.3 12 107-118 8-19 (42)
74 2jny_A Uncharacterized BCR; st 26.4 57 0.0019 20.2 2.9 29 86-118 8-36 (67)
75 1njq_A Superman protein; zinc- 26.4 24 0.00083 17.7 1.0 11 108-118 4-14 (39)
76 2ytf_A Zinc finger protein 268 26.2 27 0.00091 18.2 1.2 12 107-118 9-20 (46)
77 2cu8_A Cysteine-rich protein 2 26.0 44 0.0015 20.1 2.4 32 87-118 8-44 (76)
78 2kwq_A Protein MCM10 homolog; 25.9 46 0.0016 22.0 2.5 31 86-118 13-55 (92)
79 1ard_A Yeast transcription fac 25.9 14 0.00048 16.8 -0.0 9 110-118 2-10 (29)
80 2m0e_A Zinc finger and BTB dom 25.8 14 0.00049 16.6 -0.0 9 110-118 2-10 (29)
81 1fp0_A KAP-1 corepressor; PHD 25.7 20 0.00067 23.6 0.6 32 86-118 35-71 (88)
82 2elo_A Zinc finger protein 406 25.7 23 0.00079 17.4 0.8 11 108-118 7-17 (37)
83 2ytp_A Zinc finger protein 484 25.7 29 0.00099 18.1 1.3 12 107-118 9-20 (46)
84 1weq_A PHD finger protein 7; s 25.6 17 0.00059 23.8 0.4 33 86-118 44-78 (85)
85 1p7a_A BF3, BKLF, kruppel-like 25.4 16 0.00054 18.0 0.1 11 108-118 9-19 (37)
86 3j21_g 50S ribosomal protein L 25.4 22 0.00076 21.1 0.8 28 86-121 12-39 (51)
87 2elr_A Zinc finger protein 406 25.2 16 0.00056 17.8 0.2 11 108-118 7-17 (36)
88 2emi_A Zinc finger protein 484 25.0 31 0.001 18.0 1.3 12 107-118 9-20 (46)
89 2eof_A Zinc finger protein 268 25.0 27 0.00093 17.9 1.1 12 107-118 9-20 (44)
90 1k82_A Formamidopyrimidine-DNA 24.9 31 0.0011 26.9 1.8 27 90-118 242-268 (268)
91 2lvr_A Zinc finger and BTB dom 30.7 15 0.00053 16.8 0.0 9 110-118 3-11 (30)
92 2jne_A Hypothetical protein YF 24.8 84 0.0029 21.2 3.7 46 89-140 33-84 (101)
93 2xzf_A Formamidopyrimidine-DNA 24.8 30 0.001 26.9 1.7 27 90-118 244-270 (271)
94 2lvt_A Zinc finger and BTB dom 30.6 16 0.00053 16.8 0.0 9 110-118 2-10 (29)
95 2co8_A NEDD9 interacting prote 24.7 36 0.0012 21.1 1.8 33 86-118 13-50 (82)
96 3m7n_A Putative uncharacterize 24.6 39 0.0013 24.5 2.2 25 88-118 140-164 (179)
97 1nui_A DNA primase/helicase; z 24.5 43 0.0015 25.2 2.5 28 88-118 14-41 (255)
98 2emy_A Zinc finger protein 268 24.4 31 0.0011 17.9 1.3 12 107-118 9-20 (46)
99 1x64_A Alpha-actinin-2 associa 24.2 1.1E+02 0.0038 18.8 4.2 32 86-118 23-59 (89)
100 2ep3_A Zinc finger protein 484 24.1 31 0.0011 17.9 1.2 11 108-118 10-20 (46)
101 2l5u_A Chromodomain-helicase-D 24.1 19 0.00066 21.6 0.4 33 86-118 21-57 (61)
102 2yts_A Zinc finger protein 484 24.0 32 0.0011 17.8 1.2 12 107-118 9-20 (46)
103 2yrj_A Zinc finger protein 473 23.9 33 0.0011 17.8 1.3 12 107-118 9-20 (46)
104 1qxf_A GR2, 30S ribosomal prot 23.9 69 0.0024 20.0 2.9 28 88-118 7-34 (66)
105 2en2_A B-cell lymphoma 6 prote 23.9 29 0.00099 17.6 1.0 12 107-118 8-19 (42)
106 2jr6_A UPF0434 protein NMA0874 23.8 66 0.0023 19.9 2.9 29 86-118 6-34 (68)
107 2yto_A Zinc finger protein 484 23.8 33 0.0011 17.8 1.3 12 107-118 9-20 (46)
108 1ee8_A MUTM (FPG) protein; bet 23.7 31 0.0011 26.8 1.6 28 89-118 236-263 (266)
109 1klr_A Zinc finger Y-chromosom 23.5 17 0.00057 16.6 -0.0 9 110-118 2-10 (30)
110 1nyp_A Pinch protein; LIM doma 23.5 46 0.0016 19.3 2.1 30 88-118 5-39 (66)
111 1k3x_A Endonuclease VIII; hydr 23.5 34 0.0012 26.5 1.8 27 90-118 236-262 (262)
112 2emx_A Zinc finger protein 268 23.4 33 0.0011 17.6 1.3 12 107-118 7-18 (44)
113 2eow_A Zinc finger protein 347 23.3 32 0.0011 17.8 1.2 12 107-118 9-20 (46)
114 3u6p_A Formamidopyrimidine-DNA 23.3 34 0.0012 26.7 1.8 28 89-118 246-273 (273)
115 2epv_A Zinc finger protein 268 23.3 33 0.0011 17.7 1.2 12 107-118 9-20 (44)
116 2hf1_A Tetraacyldisaccharide-1 23.3 64 0.0022 20.0 2.7 28 87-118 7-34 (68)
117 3h0g_L DNA-directed RNA polyme 23.2 23 0.00078 21.9 0.6 26 88-118 21-46 (63)
118 1twf_J DNA-directed RNA polyme 23.2 24 0.00082 22.4 0.7 14 87-100 3-16 (70)
119 2lcq_A Putative toxin VAPC6; P 23.2 24 0.00083 25.0 0.8 26 88-119 132-157 (165)
120 2emf_A Zinc finger protein 484 23.1 34 0.0012 17.8 1.3 12 107-118 9-20 (46)
121 1nvp_C Transcription initiatio 23.0 44 0.0015 21.5 1.9 18 101-118 39-56 (76)
122 2eml_A Zinc finger protein 28 22.8 34 0.0012 17.7 1.2 12 107-118 9-20 (46)
123 1jjd_A Metallothionein, SMTA; 22.7 35 0.0012 20.5 1.3 25 88-113 7-31 (55)
124 2emj_A Zinc finger protein 28 22.7 33 0.0011 17.9 1.2 12 107-118 9-20 (46)
125 2yu5_A Zinc finger protein 473 22.6 34 0.0011 17.6 1.2 11 108-118 10-20 (44)
126 2j9u_B VPS36, vacuolar protein 22.6 27 0.00093 22.5 0.8 11 108-118 15-25 (76)
127 2em4_A Zinc finger protein 28 22.5 34 0.0012 17.8 1.2 12 107-118 9-20 (46)
128 2en3_A ZFP-95, zinc finger pro 22.5 35 0.0012 17.7 1.2 11 108-118 10-20 (46)
129 2em3_A Zinc finger protein 28 22.3 36 0.0012 17.7 1.2 12 107-118 9-20 (46)
130 1tot_A CREB-binding protein; z 22.2 61 0.0021 18.8 2.4 22 88-118 6-27 (52)
131 2eoo_A ZFP-95, zinc finger pro 22.2 37 0.0013 17.7 1.3 12 107-118 9-20 (46)
132 2emb_A Zinc finger protein 473 22.2 33 0.0011 17.6 1.1 12 107-118 9-20 (44)
133 1qyp_A RNA polymerase II; tran 22.0 87 0.003 18.2 3.1 31 88-118 15-51 (57)
134 2em2_A Zinc finger protein 28 21.8 36 0.0012 17.7 1.2 12 107-118 9-20 (46)
135 2ep2_A Zinc finger protein 484 21.7 37 0.0013 17.6 1.2 12 107-118 9-20 (46)
136 2emh_A Zinc finger protein 484 21.7 34 0.0012 17.7 1.1 12 107-118 9-20 (46)
137 1nh2_C Transcription initiatio 21.4 49 0.0017 21.4 1.9 25 86-118 34-58 (79)
138 2ytj_A Zinc finger protein 484 21.4 38 0.0013 17.5 1.2 11 108-118 10-20 (46)
139 1ef4_A Subunit N, DNA-directed 21.4 24 0.00083 21.3 0.4 13 87-99 2-14 (55)
140 2ene_A Zinc finger protein 347 21.2 37 0.0013 17.6 1.2 12 107-118 9-20 (46)
141 2eoz_A Zinc finger protein 473 21.2 38 0.0013 17.6 1.2 12 107-118 9-20 (46)
142 2i5o_A DNA polymerase ETA; zin 21.2 54 0.0018 18.2 1.8 15 86-100 7-21 (39)
143 1f62_A Transcription factor WS 21.0 15 0.00051 21.0 -0.6 33 86-118 13-49 (51)
144 2d8y_A Eplin protein; LIM doma 21.0 79 0.0027 19.7 2.9 33 86-118 13-50 (91)
145 2eox_A Zinc finger protein 473 20.9 40 0.0014 17.2 1.3 12 107-118 9-20 (44)
146 1zso_A Hypothetical protein; s 20.9 52 0.0018 24.0 2.2 31 88-118 37-78 (164)
147 2epu_A Zinc finger protein 32; 20.9 39 0.0013 17.4 1.2 12 107-118 9-20 (45)
148 2eoy_A Zinc finger protein 473 20.8 40 0.0014 17.5 1.2 12 107-118 9-20 (46)
149 2ytg_A ZFP-95, zinc finger pro 20.8 37 0.0013 17.6 1.1 12 107-118 9-20 (46)
150 2e5r_A Dystrobrevin alpha; ZZ 20.8 47 0.0016 20.1 1.7 24 88-118 11-34 (63)
151 2em5_A ZFP-95, zinc finger pro 20.6 39 0.0013 17.6 1.2 12 107-118 9-20 (46)
152 2epw_A Zinc finger protein 268 20.6 40 0.0014 17.4 1.2 12 107-118 9-20 (46)
153 2ema_A Zinc finger protein 347 20.5 41 0.0014 17.4 1.2 12 107-118 9-20 (46)
154 3uk3_C Zinc finger protein 217 20.5 20 0.00069 19.6 -0.1 10 109-118 3-12 (57)
155 2eor_A Zinc finger protein 224 20.4 38 0.0013 17.5 1.1 11 108-118 10-20 (46)
156 1x62_A C-terminal LIM domain p 20.4 57 0.0019 19.8 2.1 32 86-118 13-49 (79)
157 2el6_A Zinc finger protein 268 20.3 40 0.0014 17.5 1.2 12 107-118 9-20 (46)
158 2ytk_A Zinc finger protein 347 20.2 41 0.0014 17.4 1.2 12 107-118 9-20 (46)
159 2eme_A Zinc finger protein 473 20.0 42 0.0014 17.3 1.2 11 108-118 10-20 (46)
No 1
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=3.5e-42 Score=310.21 Aligned_cols=137 Identities=43% Similarity=0.814 Sum_probs=126.6
Q ss_pred eEEeccCCCCCCCCCCccceeEecccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCC
Q 032184 7 ILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES 86 (145)
Q Consensus 7 ~~~~t~~~~~~~~pp~~~~~~~~~d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~ 86 (145)
-.|.|...+. .||+++++|++.|+|||+|+|||+||++||.+++++++++||||++||||++..+.+.++|+|++++.
T Consensus 15 ~~f~t~~~~~--~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~ 92 (766)
T 3eh2_A 15 EPFVTGVRGQ--VPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGES 92 (766)
T ss_dssp SEEETTSTTC--CCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGG
T ss_pred CCcccCCCCC--CCCCCCCceEeeccCCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCC
Confidence 3688886544 69999999999999999999999999999999999999999999999999998777778999998889
Q ss_pred CeeeCCCCCceEcCceEEEeCCceEEeeCCCC--------------CCccCCCCCCCccCcceEEEEecCCCC
Q 032184 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--------------DGRCLDADERPELCRGTVEFAASREFM 145 (145)
Q Consensus 87 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~--------------~~~~~~~~~rPEL~~~tvE~~~p~~Y~ 145 (145)
+|+||++|||||||||+|+++|++|+||||+. +|.|.|.++||||++|+|||++|+|||
T Consensus 93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~ 165 (766)
T 3eh2_A 93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYC 165 (766)
T ss_dssp CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGS
T ss_pred CCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHHHhccccccccccccccCcccccCceeeecCHhhc
Confidence 99999999999999999999999999999999 244678899999999999999999996
No 2
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=2.9e-42 Score=310.86 Aligned_cols=137 Identities=39% Similarity=0.801 Sum_probs=125.6
Q ss_pred eEEeccCCCCCCCCCCccceeEecccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCC
Q 032184 7 ILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES 86 (145)
Q Consensus 7 ~~~~t~~~~~~~~pp~~~~~~~~~d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~ 86 (145)
..|.|...+. .||+++++|++.|+|||+|+|||+||++||.+++++++++||||++||||++..+++.++|+|++++.
T Consensus 19 ~~~~t~~~~~--~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~ 96 (770)
T 3efo_B 19 QVYATNTRGQ--IPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGES 96 (770)
T ss_dssp SEEETTSSSC--CCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTT
T ss_pred CCccCCCCCC--CCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCC
Confidence 4678875444 69999999999999999999999999999999999999999999999999998776667899999889
Q ss_pred CeeeCCCCCceEcCceEEEeCCceEEeeCCCC--------------CCccCCCCCCCccCcceEEEEecCCCC
Q 032184 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--------------DGRCLDADERPELCRGTVEFAASREFM 145 (145)
Q Consensus 87 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~--------------~~~~~~~~~rPEL~~~tvE~~~p~~Y~ 145 (145)
+|+||++|||||||||+|+++|++|+||||+. +|.|.|.++||||++|+|||++|+|||
T Consensus 97 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~ 169 (770)
T 3efo_B 97 GPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYC 169 (770)
T ss_dssp CSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGS
T ss_pred CCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchHhhccccccccccccccCcccccCceeeecCHHHh
Confidence 99999999999999999999999999999998 244567889999999999999999997
No 3
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=6e-37 Score=277.50 Aligned_cols=120 Identities=33% Similarity=0.622 Sum_probs=108.8
Q ss_pred cceeEecccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCCCCceEcCceE
Q 032184 24 TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFME 103 (145)
Q Consensus 24 ~~~~~~~d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~C~aYiNp~~~ 103 (145)
++.|+..|+|||+|+|||+||++||.+++++++++||||++|+||++..++++++|+++. .+|+||++|+|||||||+
T Consensus 50 ~~~~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~--~~pvRC~~CrayiNPf~~ 127 (810)
T 1pcx_A 50 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFVT 127 (810)
T ss_dssp GGSSSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCTTTCCBCCTTCE
T ss_pred CCccccccCCCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCC--CCCCccCCccCEecCceE
Confidence 489999999999999999999999999999999999999999999987666667899873 459999999999999999
Q ss_pred EEeCCceEEeeCCCC------------CCccCCCCCCCccCcceEEEEecCCCC
Q 032184 104 FVDNGKSFVCNFCGL------------DGRCLDADERPELCRGTVEFAASREFM 145 (145)
Q Consensus 104 ~~~~g~~w~C~lC~~------------~~~~~~~~~rPEL~~~tvE~~~p~~Y~ 145 (145)
|+.+|++|+||||+. ++.+.|.++||||+++||||++|++||
T Consensus 128 ~~~~g~~W~C~~C~~~N~~P~~y~~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~ 181 (810)
T 1pcx_A 128 FIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYT 181 (810)
T ss_dssp EETTTTEEECTTTCCEEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGGGC
T ss_pred EeCCCCEEEccCCCCcCCCchhhccccccCccccccCccccCceEEEEcCchhc
Confidence 999999999999998 234567889999999999999999996
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=1.3e-36 Score=278.21 Aligned_cols=120 Identities=33% Similarity=0.622 Sum_probs=109.8
Q ss_pred cceeEecccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCCCCceEcCceE
Q 032184 24 TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFME 103 (145)
Q Consensus 24 ~~~~~~~d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~C~aYiNp~~~ 103 (145)
++.|+..|+|||+++|||+||++||.+++++++++||||++|+||++..++++++|+++. .+|+||++|+|||||||+
T Consensus 166 ~~~~~~~d~gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~--~~pvRC~rCrAYiNPf~~ 243 (926)
T 1m2v_B 166 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFVT 243 (926)
T ss_dssp GGSSSCSSSSSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCSSSCCBCCTTCE
T ss_pred CcccccccCCCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCC--CCCCccCCccCEecCceE
Confidence 489999999999999999999999999999999999999999999987666667899873 459999999999999999
Q ss_pred EEeCCceEEeeCCCC------------CCccCCCCCCCccCcceEEEEecCCCC
Q 032184 104 FVDNGKSFVCNFCGL------------DGRCLDADERPELCRGTVEFAASREFM 145 (145)
Q Consensus 104 ~~~~g~~w~C~lC~~------------~~~~~~~~~rPEL~~~tvE~~~p~~Y~ 145 (145)
|+.+|++|+||||+. ++.|.|.++||||+++||||++|++||
T Consensus 244 ~~~~g~~W~CnfC~~~N~~P~~Y~~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~ 297 (926)
T 1m2v_B 244 FIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYT 297 (926)
T ss_dssp EETTTTEEECTTTCCEEECCGGGTTTSTTCGGGGGGSHHHHCSEEEEECCGGGC
T ss_pred EeCCCCEEEccCCCCCCCCchhhccccccCccccccCccccCceEEEEcChhhc
Confidence 999999999999998 244567889999999999999999996
No 5
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=1.4e-34 Score=260.32 Aligned_cols=108 Identities=36% Similarity=0.735 Sum_probs=95.6
Q ss_pred ccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCCCCceEcCceEEEeCCce
Q 032184 31 DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKS 110 (145)
Q Consensus 31 d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~C~aYiNp~~~~~~~g~~ 110 (145)
++|||+|+|||+|||+||.+++++++++||||++||||++.. ++|+++ ..+|+||++|||||||||+|. ++++
T Consensus 34 ~~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~----~~P~v~--~~~p~RC~rCrayiNPf~~f~-~~~~ 106 (751)
T 3eh1_A 34 KKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLT----QLPVIT--SNTIVRCRSCRTYINPFVSFI-DQRR 106 (751)
T ss_dssp HHHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCS----CCCEEC--CSCCCBCTTTCCBCCTTCEES-SSSE
T ss_pred cccCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCC----CCCccC--CCCCCcccCccCEeCCceEEe-cCCE
Confidence 489999999999999999999999999999999999999763 388887 357999999999999999994 5789
Q ss_pred EEeeCCCC----CC---------ccCCCCCCCccCcceEEEEecCCCC
Q 032184 111 FVCNFCGL----DG---------RCLDADERPELCRGTVEFAASREFM 145 (145)
Q Consensus 111 w~C~lC~~----~~---------~~~~~~~rPEL~~~tvE~~~p~~Y~ 145 (145)
|+||||+. .. .+.|.++||||++|||||++|++||
T Consensus 107 w~Cn~C~~~N~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~ 154 (751)
T 3eh1_A 107 WKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYM 154 (751)
T ss_dssp EECTTTCCEEECCGGGC---------CGGGSHHHHCSEEEEEECGGGC
T ss_pred EEcccccCCCCCCHHHhcccccccccCcccCchhccceEEEEcChhhh
Confidence 99999998 11 1347789999999999999999996
No 6
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=99.96 E-value=2.3e-31 Score=239.94 Aligned_cols=113 Identities=22% Similarity=0.304 Sum_probs=99.7
Q ss_pred ceeEecccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCC--CCceEcCce
Q 032184 25 SKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC--CRGYRNPFM 102 (145)
Q Consensus 25 ~~~~~~d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~--C~aYiNp~~ 102 (145)
++|...|++|++|+|||+||++||.+++++++++||||++|+||++.. ++|+++ .+|+||++ |+|||||||
T Consensus 6 ~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~---~~pvRC~~~~CrayiNPf~ 78 (769)
T 2nut_A 6 TTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQ---YEPVLCSRTTCRAVLNPLC 78 (769)
T ss_dssp -CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCS----CCCCBC---SCCCBCSSTTCCCBCCTTS
T ss_pred cchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCC----CCCcCC---CCCCcCCCCCCCeEECCce
Confidence 567777889999999999999999999999999999999999999652 488888 57999999 999999999
Q ss_pred EEEeCCceEEeeCCCC----CCccC---CCCCCCcc--CcceEEEEecCCC
Q 032184 103 EFVDNGKSFVCNFCGL----DGRCL---DADERPEL--CRGTVEFAASREF 144 (145)
Q Consensus 103 ~~~~~g~~w~C~lC~~----~~~~~---~~~~rPEL--~~~tvE~~~p~~Y 144 (145)
+|+.+|++|+||||+. ...+. ..+.|||| +++||||++|++|
T Consensus 79 ~~~~~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~ 129 (769)
T 2nut_A 79 QVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGP 129 (769)
T ss_dssp EEETTTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSC
T ss_pred EEeCCCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCC
Confidence 9999999999999999 22222 34678999 8999999999987
No 7
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=99.95 E-value=2.8e-29 Score=226.29 Aligned_cols=103 Identities=20% Similarity=0.327 Sum_probs=91.0
Q ss_pred CCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCC--CCceEcCceEEEeCCceE
Q 032184 34 NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC--CRGYRNPFMEFVDNGKSF 111 (145)
Q Consensus 34 n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~--C~aYiNp~~~~~~~g~~w 111 (145)
|++++|||+||++||.+++++++++||||++||||++.. ++|+++ .+|+||++ |+|||||||+|+.+|++|
T Consensus 6 ~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~---~~pvRC~~~~CrayiNPf~~~~~~~~~W 78 (768)
T 1m2o_A 6 NEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYD----ELNVAP---YNPVVCSGPHCKSILNPYCVIDPRNSSW 78 (768)
T ss_dssp HHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCT----TCCEEC---SCCCBCCSTTTCCBCCTTSCEETTTTEE
T ss_pred ccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCC----CCCcCC---CCCCccCCCCCCeEECCceEEeCCCCEE
Confidence 789999999999999999999999999999999999642 488987 57999999 999999999999999999
Q ss_pred EeeCCCCCC----ccC---CCCCCCccCcceEEEEecCC
Q 032184 112 VCNFCGLDG----RCL---DADERPELCRGTVEFAASRE 143 (145)
Q Consensus 112 ~C~lC~~~~----~~~---~~~~rPEL~~~tvE~~~p~~ 143 (145)
+||||+..+ .+. ..+.||||+++||||++|++
T Consensus 79 ~C~~C~~~N~~P~~y~~~~~~~~~pEL~~~tvEy~~p~~ 117 (768)
T 1m2o_A 79 SCPICNSRNHLPPQYTNLSQENMPLELQSTTIEYITNKP 117 (768)
T ss_dssp CCTTTCCCCBCCGGGCC---CCCCGGGTCSEEEEECSCC
T ss_pred EcccCCCCCCCChHHccCCcccCChhhccCCEEEECCCC
Confidence 999999922 221 34678999999999999863
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.47 E-value=1.4e-14 Score=92.06 Aligned_cols=34 Identities=32% Similarity=0.627 Sum_probs=32.4
Q ss_pred CCCeeeCCC--CCceEcCceEEEeCCceEEeeCCCC
Q 032184 85 ESGLVRCCC--CRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 85 ~~~~~RC~~--C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
+++|+||++ |+||||||++|+.++++|+|+||+.
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~ 41 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQ 41 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCC
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCC
Confidence 378999999 9999999999999999999999998
No 9
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=84.92 E-value=0.51 Score=30.30 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=20.5
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
+-++||. |++++ +. +.+.++-+|. ||.
T Consensus 2 Y~vv~C~-C~~~~--~~--~~~~kT~~C~-CG~ 28 (71)
T 1gh9_A 2 YIIFRCD-CGRAL--YS--REGAKTRKCV-CGR 28 (71)
T ss_dssp EEEEEET-TSCCE--EE--ETTCSEEEET-TTE
T ss_pred eEEEECC-CCCEE--EE--cCCCcEEECC-CCC
Confidence 3479999 99985 33 5566667898 998
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=81.21 E-value=3.5 Score=23.85 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=22.2
Q ss_pred CeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 87 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
....|..|++- -..++.....++|..||.
T Consensus 4 ~~~~CP~C~~~---~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 4 KQKVCPACESA---ELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp SCCSCTTTSCC---CEEEETTTTEEEESSSCC
T ss_pred ccEeCcCCCCc---ceEEcCCCCeEECcccCC
Confidence 35689999881 234677777899999999
No 11
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=80.84 E-value=0.29 Score=30.50 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=18.7
Q ss_pred eeeCCCCCceEcCceEEEeCCceEEeeCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~ 117 (145)
.--|.+|++++.- -...-+|.|++|.
T Consensus 33 ~r~CaRCGg~v~l----r~~k~~WvC~lC~ 58 (62)
T 2a20_A 33 TKFCARCGGRVSL----RSNKVMWVCNLCR 58 (62)
T ss_dssp CEECTTSEEEEES----STTCEEEEEHHHH
T ss_pred CeeecccCCEeee----cCCeEEEEehhhh
Confidence 5567888888753 3355689999995
No 12
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=79.01 E-value=0.87 Score=23.31 Aligned_cols=26 Identities=31% Similarity=0.800 Sum_probs=21.3
Q ss_pred eCCCCCceEcCceEEEeCCceEEeeCC
Q 032184 90 RCCCCRGYRNPFMEFVDNGKSFVCNFC 116 (145)
Q Consensus 90 RC~~C~aYiNp~~~~~~~g~~w~C~lC 116 (145)
.|-.|--|-|-||. +.-|..|.|.-|
T Consensus 2 ~cvscv~fgngfcg-dncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCG-DNCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEE-CSSSCEEECSCC
T ss_pred cceEeEeecCcccc-CCcCCcccccCC
Confidence 37788888899997 667788999876
No 13
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=69.20 E-value=1.3 Score=27.99 Aligned_cols=32 Identities=31% Similarity=0.677 Sum_probs=28.6
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
..+..|.+|++--.|...-...|. ..||.||.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl 38 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 38 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHH
Confidence 457899999999999999888887 89999987
No 14
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.85 E-value=2.3 Score=27.61 Aligned_cols=29 Identities=14% Similarity=0.383 Sum_probs=17.4
Q ss_pred eCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 90 RCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 90 RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
.|..|.-=+.--|.+...+..|+|.+|..
T Consensus 44 ~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k 72 (76)
T 2csz_A 44 TCRGCNHLVCRDCRIQESNGTWRCKVCSG 72 (76)
T ss_dssp EETTTTEECCTTSEEECSTTCEEEHHHHS
T ss_pred cCcccChhhcccccccCCCCCEEEeeCch
Confidence 34444444444555544446799999964
No 15
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=62.42 E-value=1.3 Score=25.53 Aligned_cols=30 Identities=30% Similarity=0.639 Sum_probs=24.8
Q ss_pred eeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
|..|.+|++--.|...-...|. -.||.||.
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 30 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 30 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHH
Confidence 3579999999999888777776 88999986
No 16
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=60.46 E-value=7.3 Score=25.44 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=20.9
Q ss_pred CeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 87 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
.--.|..|++-+ .+......|.|..|+.
T Consensus 26 ~~y~Cp~CG~~~----v~r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 26 EDHACPNCGEDR----VDRQGTGIWQCSYCDY 53 (83)
T ss_dssp SCEECSSSCCEE----EEEEETTEEEETTTCC
T ss_pred ccCcCCCCCCcc----eeccCCCeEECCCCCC
Confidence 356899999843 2344556899999999
No 17
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=56.81 E-value=2.6 Score=30.68 Aligned_cols=31 Identities=16% Similarity=0.399 Sum_probs=21.1
Q ss_pred eeeCCCCCceEcCceEE-EeCCceEEeeCCCC
Q 032184 88 LVRCCCCRGYRNPFMEF-VDNGKSFVCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~-~~~g~~w~C~lC~~ 118 (145)
-..|..|+..+.--|.. ......|.|++|..
T Consensus 85 g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 85 RRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp CEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 45666666666655552 33456899999987
No 18
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.35 E-value=9.5 Score=22.42 Aligned_cols=25 Identities=28% Similarity=0.713 Sum_probs=18.2
Q ss_pred eeeCCCCCc--eEcCceEEEeCCceEEeeCCCC
Q 032184 88 LVRCCCCRG--YRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~a--YiNp~~~~~~~g~~w~C~lC~~ 118 (145)
.--|.+|++ ++- ....+|.|.-||.
T Consensus 19 ~k~CP~CG~~~fm~------~~~~R~~C~kCG~ 45 (50)
T 3j20_Y 19 NKFCPRCGPGVFMA------DHGDRWACGKCGY 45 (50)
T ss_dssp SEECSSSCSSCEEE------ECSSEEECSSSCC
T ss_pred cccCCCCCCceEEe------cCCCeEECCCCCC
Confidence 466999998 542 2345799999986
No 19
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=55.21 E-value=6 Score=28.03 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=22.2
Q ss_pred eeeCCCCCceEcCceEEEe----CCceEEeeCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVD----NGKSFVCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~----~g~~w~C~lC~~ 118 (145)
-..|..|+-.+.--|.... ....|.|++|..
T Consensus 72 g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 72 SVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp EEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 3677777777777666644 235799999997
No 20
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=55.02 E-value=4 Score=30.76 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=18.2
Q ss_pred CeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 87 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
..-+|..|+-... +...|+|++|+.
T Consensus 170 ~~~~C~~CG~i~~-------g~~p~~CP~C~~ 194 (202)
T 1yuz_A 170 KFHLCPICGYIHK-------GEDFEKCPICFR 194 (202)
T ss_dssp CEEECSSSCCEEE-------SSCCSBCTTTCC
T ss_pred cEEEECCCCCEEc-------CcCCCCCCCCCC
Confidence 4679999984432 234599999998
No 21
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=54.40 E-value=6.5 Score=27.22 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=22.0
Q ss_pred eeCCCCCceEcCceEE---EeCC----ceEEeeCCCC
Q 032184 89 VRCCCCRGYRNPFMEF---VDNG----KSFVCNFCGL 118 (145)
Q Consensus 89 ~RC~~C~aYiNp~~~~---~~~g----~~w~C~lC~~ 118 (145)
.-|++|++++=|-.+- +..+ -.++|..||+
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~ 102 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGY 102 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCC
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCC
Confidence 4799999999886332 3333 3678999998
No 22
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=53.78 E-value=2.8 Score=31.79 Aligned_cols=31 Identities=29% Similarity=0.651 Sum_probs=20.7
Q ss_pred CCCeeeCCCCCc-eEcCceEEEeCCceEEeeCCCC
Q 032184 85 ESGLVRCCCCRG-YRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 85 ~~~~~RC~~C~a-YiNp~~~~~~~g~~w~C~lC~~ 118 (145)
.-...+|++|++ |+... .+....++|++|.-
T Consensus 131 ~L~l~~C~~Cgg~fv~~~---~~~~~~f~Cp~C~~ 162 (192)
T 2avu_E 131 LLQLSSCNCCGGNFITHA---HQPVGSFACSLCQP 162 (192)
T ss_dssp SEEEEECTTTCCEEEEES---SCCSSCCCCTTC--
T ss_pred ceeeCcCCCCCCCeeCcc---CCCCCCCcCCCCCC
Confidence 345789999998 44333 23556799999997
No 23
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=53.55 E-value=2 Score=25.16 Aligned_cols=9 Identities=33% Similarity=1.283 Sum_probs=6.4
Q ss_pred eEEeeCCCC
Q 032184 110 SFVCNFCGL 118 (145)
Q Consensus 110 ~w~C~lC~~ 118 (145)
.|+|+.||.
T Consensus 30 dw~CP~Cg~ 38 (46)
T 6rxn_A 30 DWCCPVCGV 38 (46)
T ss_dssp TCBCTTTCC
T ss_pred CCcCcCCCC
Confidence 477777776
No 24
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=53.18 E-value=2.3 Score=29.47 Aligned_cols=31 Identities=29% Similarity=0.670 Sum_probs=26.0
Q ss_pred CeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 87 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
....|.+|++-..|...-+..|. +.||.|+.
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~-~lCnaCgl 34 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGH-YLCNACGL 34 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSC-EECHHHHH
T ss_pred CCCCCCCCCCccCCcceECCCCC-CcCcchhh
Confidence 46789999999999998887774 99999996
No 25
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=49.44 E-value=2.2 Score=25.50 Aligned_cols=8 Identities=38% Similarity=1.302 Sum_probs=4.2
Q ss_pred EEeeCCCC
Q 032184 111 FVCNFCGL 118 (145)
Q Consensus 111 w~C~lC~~ 118 (145)
|+|+.|+.
T Consensus 37 w~CP~Cg~ 44 (52)
T 1e8j_A 37 WACPVCGA 44 (52)
T ss_dssp CCCSSSCC
T ss_pred CcCCCCCC
Confidence 55555554
No 26
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=48.27 E-value=2.9 Score=26.54 Aligned_cols=32 Identities=34% Similarity=0.634 Sum_probs=18.2
Q ss_pred CeeeCCCCCceEcCc-----------eEEEeCCceEEeeCCCC
Q 032184 87 GLVRCCCCRGYRNPF-----------MEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 87 ~~~RC~~C~aYiNp~-----------~~~~~~g~~w~C~lC~~ 118 (145)
..-+|..|+=...|- ..|..--..|+|+.|+.
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga 48 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRS 48 (70)
T ss_dssp SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCC
T ss_pred ceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCC
Confidence 356788787444321 12222333588888888
No 27
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=48.18 E-value=2.7 Score=27.90 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=20.0
Q ss_pred CCeeeCCCCCceEcCc-----------eEEEeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPF-----------MEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~-----------~~~~~~g~~w~C~lC~~ 118 (145)
...-+|..|+=...|- ..|..--..|+|+.|+.
T Consensus 33 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 33 YLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred CceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 3468888888444431 22223333589999987
No 28
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=46.72 E-value=8.1 Score=26.92 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=21.7
Q ss_pred eeCCCCCceEcCceEE---EeCC----ceEEeeCCCC
Q 032184 89 VRCCCCRGYRNPFMEF---VDNG----KSFVCNFCGL 118 (145)
Q Consensus 89 ~RC~~C~aYiNp~~~~---~~~g----~~w~C~lC~~ 118 (145)
.-|++|++++=|-.+. +..+ -.++|..||+
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~ 97 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGH 97 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCC
Confidence 4799999999886322 2233 3678999998
No 29
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=46.46 E-value=1.9 Score=25.25 Aligned_cols=31 Identities=29% Similarity=0.725 Sum_probs=25.7
Q ss_pred CeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 87 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
....|.+|++--.|...-...|. ..||.||.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 33 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGL 33 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHH
Confidence 35679999999999888777776 78998886
No 30
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=46.15 E-value=2.9 Score=24.95 Aligned_cols=9 Identities=44% Similarity=1.368 Sum_probs=5.1
Q ss_pred eEEeeCCCC
Q 032184 110 SFVCNFCGL 118 (145)
Q Consensus 110 ~w~C~lC~~ 118 (145)
.|+|+.|+.
T Consensus 35 dw~CP~Cg~ 43 (52)
T 1yk4_A 35 DWVCPLCGA 43 (52)
T ss_dssp TCBCTTTCC
T ss_pred CCcCCCCCC
Confidence 366666654
No 31
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=43.02 E-value=3.4 Score=24.96 Aligned_cols=9 Identities=44% Similarity=1.239 Sum_probs=5.2
Q ss_pred eEEeeCCCC
Q 032184 110 SFVCNFCGL 118 (145)
Q Consensus 110 ~w~C~lC~~ 118 (145)
.|+|+.|+.
T Consensus 36 dw~CP~Cga 44 (55)
T 2v3b_B 36 DWVCPDCGV 44 (55)
T ss_dssp TCCCTTTCC
T ss_pred CCcCCCCCC
Confidence 366666655
No 32
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=41.93 E-value=4.1 Score=24.58 Aligned_cols=9 Identities=44% Similarity=1.479 Sum_probs=5.5
Q ss_pred eEEeeCCCC
Q 032184 110 SFVCNFCGL 118 (145)
Q Consensus 110 ~w~C~lC~~ 118 (145)
.|+|+.|+.
T Consensus 36 dw~CP~Cg~ 44 (54)
T 4rxn_A 36 DWVCPLCGV 44 (54)
T ss_dssp TCBCTTTCC
T ss_pred CCcCcCCCC
Confidence 466666665
No 33
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=41.67 E-value=9.7 Score=17.42 Aligned_cols=10 Identities=40% Similarity=1.075 Sum_probs=8.0
Q ss_pred ceEEeeCCCC
Q 032184 109 KSFVCNFCGL 118 (145)
Q Consensus 109 ~~w~C~lC~~ 118 (145)
+.|.|..|+.
T Consensus 2 k~~~C~~C~k 11 (27)
T 2kvh_A 2 KPFSCSLCPQ 11 (27)
T ss_dssp CCEECSSSSC
T ss_pred cCccCCCcCh
Confidence 3589999987
No 34
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=41.02 E-value=3.6 Score=26.96 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=17.8
Q ss_pred CCeeeCCCCCceEcCc-----------eEEEeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPF-----------MEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~-----------~~~~~~g~~w~C~lC~~ 118 (145)
...-+|..|+=...|- ..|..--..|+|+.|+.
T Consensus 25 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp CCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred cceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 3467788777443321 11222223488888887
No 35
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=39.56 E-value=12 Score=18.12 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=9.0
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 5 ~k~~~C~~C~k 15 (35)
T 2elx_A 5 SSGYVCALCLK 15 (35)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeECCCCcc
Confidence 45699999998
No 36
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=37.74 E-value=11 Score=25.65 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=20.0
Q ss_pred CeeeCCCCCceEcCceEEEeCCceE-EeeCCCCC
Q 032184 87 GLVRCCCCRGYRNPFMEFVDNGKSF-VCNFCGLD 119 (145)
Q Consensus 87 ~~~RC~~C~aYiNp~~~~~~~g~~w-~C~lC~~~ 119 (145)
...||.+|+...-. ..... .|+-||+.
T Consensus 72 ~~~~C~~CG~~~e~------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKP------NALDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECS------CCSTTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeC------CCCCCCcCccccCC
Confidence 46899999877654 23357 89999984
No 37
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.35 E-value=20 Score=24.13 Aligned_cols=10 Identities=20% Similarity=0.859 Sum_probs=6.0
Q ss_pred eeCCCCCceE
Q 032184 89 VRCCCCRGYR 98 (145)
Q Consensus 89 ~RC~~C~aYi 98 (145)
.+|..|+.-|
T Consensus 33 F~C~~C~~~L 42 (122)
T 1m3v_A 33 LKCSSCQAQL 42 (122)
T ss_dssp HCCSSSCCCT
T ss_pred CCcCCCCCcc
Confidence 4666666555
No 38
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=37.27 E-value=15 Score=17.92 Aligned_cols=11 Identities=36% Similarity=0.914 Sum_probs=9.0
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 5 ~k~~~C~~C~k 15 (35)
T 1srk_A 5 KRPFVCRICLS 15 (35)
T ss_dssp CSCEECSSSCC
T ss_pred CcCeeCCCCCc
Confidence 45699999998
No 39
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=35.95 E-value=17 Score=25.04 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=20.7
Q ss_pred eeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
+.=|..|+..|-|--.-......|.|..|+.
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y 34 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSY 34 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSC
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCC
Confidence 4569999998844321003345799999998
No 40
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=35.48 E-value=30 Score=21.16 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=17.2
Q ss_pred eeeCCCCCceEcCceEEEeCCceE-----EeeCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w-----~C~lC~~ 118 (145)
..+|..|+--|-+--.+.-.++.| +|..|+.
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~ 42 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRK 42 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCC
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCC
Confidence 456777777664322334455554 6666666
No 41
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.34 E-value=7.1 Score=26.76 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=18.8
Q ss_pred CeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 87 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
.+.+|++|+--+ ....++.-+|+.|++
T Consensus 66 ~p~~C~~CG~~F-----~~~~~kPsrCP~CkS 92 (105)
T 2gmg_A 66 KPAQCRKCGFVF-----KAEINIPSRCPKCKS 92 (105)
T ss_dssp CCCBBTTTCCBC-----CCCSSCCSSCSSSCC
T ss_pred ECcChhhCcCee-----cccCCCCCCCcCCCC
Confidence 478999998653 233445578999987
No 42
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=35.29 E-value=27 Score=23.71 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=24.4
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceE-----EeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w-----~C~lC~~ 118 (145)
....+|.+|+-.|-.-..+.-.++.| +|..|+.
T Consensus 59 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~ 96 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQA 96 (123)
T ss_dssp SSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCC
T ss_pred ccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCC
Confidence 34689999999886543355667777 7888887
No 43
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=33.94 E-value=15 Score=16.74 Aligned_cols=9 Identities=33% Similarity=1.221 Sum_probs=7.6
Q ss_pred eEEeeCCCC
Q 032184 110 SFVCNFCGL 118 (145)
Q Consensus 110 ~w~C~lC~~ 118 (145)
.+.|..|+.
T Consensus 3 ~~~C~~C~k 11 (28)
T 2kvf_A 3 PYSCSVCGK 11 (28)
T ss_dssp SEECSSSCC
T ss_pred CccCCCCCc
Confidence 588999987
No 44
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.75 E-value=14 Score=16.75 Aligned_cols=9 Identities=33% Similarity=0.910 Sum_probs=7.4
Q ss_pred eEEeeCCCC
Q 032184 110 SFVCNFCGL 118 (145)
Q Consensus 110 ~w~C~lC~~ 118 (145)
.|.|..|+.
T Consensus 2 ~~~C~~C~k 10 (29)
T 2m0f_A 2 PLKCRECGK 10 (29)
T ss_dssp CEECTTTSC
T ss_pred CccCCCCCC
Confidence 478999987
No 45
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.58 E-value=17 Score=17.87 Aligned_cols=11 Identities=45% Similarity=1.228 Sum_probs=8.8
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elq_A 7 GKPFKCSLCEY 17 (36)
T ss_dssp CCSEECSSSSC
T ss_pred CCCccCCCCCc
Confidence 45689999987
No 46
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=33.15 E-value=16 Score=21.06 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=22.4
Q ss_pred CCeeeCCCCCceEcC---ceEEEeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNP---FMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp---~~~~~~~g~~w~C~lC~~ 118 (145)
..+..|..|+.-..- +..+-.+.+.|+|..|+.
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k 47 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHT 47 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCC
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCC
Confidence 457899999864321 113344567899999998
No 47
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=33.09 E-value=31 Score=20.46 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=20.3
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
..+..|..|+.+| + .+.++|..|+.
T Consensus 20 ~~pt~C~~C~~~i-----~---kqg~kC~~C~~ 44 (59)
T 1rfh_A 20 GGPGWCDLCGREV-----L---RQALRCANCKF 44 (59)
T ss_dssp SCCEECTTTCSEE-----C---SCCEECTTTSC
T ss_pred CCCeEchhcchhh-----h---hCccEeCCCCC
Confidence 5689999999999 1 33489999986
No 48
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=39.12 E-value=9.2 Score=17.33 Aligned_cols=9 Identities=44% Similarity=1.261 Sum_probs=7.5
Q ss_pred eEEeeCCCC
Q 032184 110 SFVCNFCGL 118 (145)
Q Consensus 110 ~w~C~lC~~ 118 (145)
.|.|..|+.
T Consensus 2 p~~C~~C~k 10 (26)
T 2lvu_A 2 PYVCERCGK 10 (26)
Confidence 478999987
No 49
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.68 E-value=18 Score=17.65 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=8.6
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elt_A 7 GKPYKCPQCSY 17 (36)
T ss_dssp CCSEECSSSSC
T ss_pred CCCCCCCCCCc
Confidence 35688999987
No 50
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=32.36 E-value=55 Score=19.09 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=19.5
Q ss_pred eeCCCCCceEcCc-eEEEeCCceEE-------eeCCCC
Q 032184 89 VRCCCCRGYRNPF-MEFVDNGKSFV-------CNFCGL 118 (145)
Q Consensus 89 ~RC~~C~aYiNp~-~~~~~~g~~w~-------C~lC~~ 118 (145)
.+|.+|+-.|-+- ..+...++.|- |..|+.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~ 40 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSK 40 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCC
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCC
Confidence 4788888888752 33445566664 777766
No 51
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=32.25 E-value=28 Score=21.07 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=12.8
Q ss_pred eeeCCCCCceEcCceEEEeCCceEEee
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSFVCN 114 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~ 114 (145)
=.+|..|+.-|..-.-+..+++ ..|.
T Consensus 27 CF~C~~C~~~L~~~~~~~~~g~-~yC~ 52 (76)
T 1iml_A 27 CLKCEKCGKTLTSGGHAEHEGK-PYCN 52 (76)
T ss_dssp TCBCTTTCCBCCTTTEEEETTE-EEET
T ss_pred CCCccccCccCCCCceECcCCe-EeeC
Confidence 3566666666654222234443 4454
No 52
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.05 E-value=18 Score=17.71 Aligned_cols=11 Identities=45% Similarity=1.280 Sum_probs=8.6
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2els_A 7 GKIFTCEYCNK 17 (36)
T ss_dssp CCCEECTTTCC
T ss_pred CCCEECCCCCc
Confidence 35688999987
No 53
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=31.60 E-value=17 Score=16.51 Aligned_cols=9 Identities=33% Similarity=0.803 Sum_probs=7.4
Q ss_pred eEEeeCCCC
Q 032184 110 SFVCNFCGL 118 (145)
Q Consensus 110 ~w~C~lC~~ 118 (145)
.+.|..|+.
T Consensus 2 ~~~C~~C~k 10 (29)
T 1rik_A 2 KFACPECPK 10 (29)
T ss_dssp CEECSSSSC
T ss_pred CccCCCCCc
Confidence 478999987
No 54
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.54 E-value=16 Score=16.77 Aligned_cols=10 Identities=20% Similarity=0.833 Sum_probs=7.9
Q ss_pred ceEEeeCCCC
Q 032184 109 KSFVCNFCGL 118 (145)
Q Consensus 109 ~~w~C~lC~~ 118 (145)
+.+.|..|+.
T Consensus 2 k~~~C~~C~k 11 (27)
T 2kvg_A 2 APYRCPLCRA 11 (27)
T ss_dssp CTEEETTTTE
T ss_pred cCcCCCCCCc
Confidence 3588999986
No 55
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.48 E-value=22 Score=17.75 Aligned_cols=11 Identities=27% Similarity=0.878 Sum_probs=8.6
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elm_A 7 GHLYYCSQCHY 17 (37)
T ss_dssp SCEEECSSSSC
T ss_pred CcCeECCCCCc
Confidence 45688999987
No 56
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.66 E-value=21 Score=17.60 Aligned_cols=11 Identities=27% Similarity=1.198 Sum_probs=8.4
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elp_A 7 GRAMKCPYCDF 17 (37)
T ss_dssp CCCEECSSSSC
T ss_pred CCCeECCCCCh
Confidence 35688999887
No 57
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.50 E-value=30 Score=21.45 Aligned_cols=33 Identities=18% Similarity=0.459 Sum_probs=22.5
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceE-----EeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w-----~C~lC~~ 118 (145)
....+|..|+--|-.--.+...++.| +|..|+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~ 50 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSV 50 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCC
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCC
Confidence 45778999998875322344566666 7888877
No 58
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.43 E-value=22 Score=17.39 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=8.7
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.+.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elv_A 7 GLLYDCHICER 17 (36)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCCCCC
Confidence 35689999987
No 59
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.32 E-value=43 Score=19.69 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=19.6
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceE-----EeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w-----~C~lC~~ 118 (145)
....+|..|+..|-.-. +...++.| +|..|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~ 39 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTGG-VTYREQPWHKECFVCTACRK 39 (70)
T ss_dssp CCCCBCSSSCCBCCSSE-EESSSSEEETTTSBCSSSCC
T ss_pred CCCCCCcccCCeeccce-EEECccccCCCCCccCCCCC
Confidence 34567888887775422 44455555 5777766
No 60
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=30.13 E-value=3.7 Score=25.59 Aligned_cols=32 Identities=31% Similarity=0.600 Sum_probs=26.8
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
.....|.+|++--.|...-...|. ..||.||.
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl 36 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGD-PVCNACGL 36 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHH
T ss_pred CCCCcCCCcCCCCCCccCCCCCCC-chhhHHHH
Confidence 346789999999999988777777 78999987
No 61
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=29.45 E-value=9.8 Score=23.53 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=24.2
Q ss_pred CCeeeCCCCCceEcCceEE----EeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEF----VDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~----~~~g~~w~C~lC~~ 118 (145)
..++.|..|....+.+|-. ......|.|..|..
T Consensus 22 ~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 22 TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 5689999999998876631 12234599999976
No 62
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.25 E-value=19 Score=16.32 Aligned_cols=10 Identities=40% Similarity=1.394 Sum_probs=7.9
Q ss_pred ceEEeeCCCC
Q 032184 109 KSFVCNFCGL 118 (145)
Q Consensus 109 ~~w~C~lC~~ 118 (145)
+.+.|..|+.
T Consensus 2 k~~~C~~C~~ 11 (30)
T 2m0d_A 2 KPYQCDYCGR 11 (30)
T ss_dssp CCEECTTTCC
T ss_pred cCccCCCCCc
Confidence 3588999987
No 63
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=29.10 E-value=29 Score=20.67 Aligned_cols=28 Identities=21% Similarity=0.565 Sum_probs=19.5
Q ss_pred eeeCCCCCceEcCceEEEeCCceEEeeCCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD 119 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~~ 119 (145)
-..|.+|++-+ |+. .....|.|.-|+.+
T Consensus 18 ~~fCPkCG~~~--~ma--~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGV--FLA--EHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTC--CCE--ECSSEEECTTTCCC
T ss_pred cccCcCCCCce--eEe--ccCCEEECCCCCCE
Confidence 45699999955 443 22347999999974
No 64
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=29.06 E-value=50 Score=20.60 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=21.8
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
-.+.+|..|++=+ . ++......+|..|+.
T Consensus 6 L~iL~CP~ck~~L---~-~~~~~~~LiC~~cg~ 34 (70)
T 2js4_A 6 LDILVCPVCKGRL---E-FQRAQAELVCNADRL 34 (70)
T ss_dssp CCCCBCTTTCCBE---E-EETTTTEEEETTTTE
T ss_pred hhheECCCCCCcC---E-EeCCCCEEEcCCCCc
Confidence 3588999999943 2 344556799999998
No 65
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=28.71 E-value=29 Score=21.58 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=20.2
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
..+..|..|+.+| ..+.++|..|+.
T Consensus 33 ~~pt~C~~C~~~l--------~~qG~kC~~C~~ 57 (72)
T 2fnf_X 33 GGPGWCDLCGREV--------LRQALRCANCKF 57 (72)
T ss_dssp SSCCBCTTTSSBC--------SSCCEECTTSSC
T ss_pred CCCcchhhhhHHH--------HhCcCccCCCCC
Confidence 5688999999999 233489999987
No 66
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=28.64 E-value=23 Score=21.18 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=20.4
Q ss_pred eeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
..+|..|+.-- ..++....-++|.-||.
T Consensus 11 ~~~Cp~C~~~~---lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 11 RVTCPNHPDAI---LVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCSBTTBSSSC---CEECSSSCCEECTTTCC
T ss_pred cccCcCCCCCc---eeEeCCCCeEEeCCCCC
Confidence 55899998621 33465666799999998
No 67
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.07 E-value=42 Score=22.11 Aligned_cols=30 Identities=17% Similarity=0.462 Sum_probs=14.0
Q ss_pred eeCCCCCceEcCceEEEeCCceE-----EeeCCCC
Q 032184 89 VRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (145)
Q Consensus 89 ~RC~~C~aYiNp~~~~~~~g~~w-----~C~lC~~ 118 (145)
.+|..|+--|-.--.+.-.++.| +|..|+.
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~ 38 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 38 (114)
T ss_dssp BCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCS
T ss_pred CCCcCCCCeeCCcEEEEECchhHHHhcCcccccCC
Confidence 45555555554321233344444 5555554
No 68
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=27.91 E-value=23 Score=19.17 Aligned_cols=12 Identities=33% Similarity=1.107 Sum_probs=9.8
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|.+|+.
T Consensus 4 ~~kp~~C~~C~k 15 (48)
T 3iuf_A 4 RDKPYACDICGK 15 (48)
T ss_dssp TTSCEECTTTCC
T ss_pred CCcCEECCCcCc
Confidence 346799999998
No 69
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=27.72 E-value=25 Score=17.88 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=9.2
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 8 ~k~~~C~~C~k 18 (42)
T 2el5_A 8 ENPYECSECGK 18 (42)
T ss_dssp CCSEECSSSCC
T ss_pred CCCccCCCcCh
Confidence 45699999998
No 70
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.62 E-value=40 Score=19.99 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=18.5
Q ss_pred CeeeCCCCCceEcCc---eEEEeCCceE-----EeeCCCC
Q 032184 87 GLVRCCCCRGYRNPF---MEFVDNGKSF-----VCNFCGL 118 (145)
Q Consensus 87 ~~~RC~~C~aYiNp~---~~~~~~g~~w-----~C~lC~~ 118 (145)
...+|..|+-.|-++ ..+...++.| +|..|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~ 43 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSL 43 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCC
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCC
Confidence 356788888777651 1122344454 6777776
No 71
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.36 E-value=26 Score=17.72 Aligned_cols=11 Identities=27% Similarity=0.854 Sum_probs=9.2
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 8 ~k~~~C~~C~k 18 (41)
T 2ept_A 8 QRVYECQECGK 18 (41)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCCCCC
Confidence 45699999998
No 72
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.07 E-value=43 Score=19.79 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=16.4
Q ss_pred CeeeCCCCCceEcCc-eEEEeCCceE-----EeeCCCC
Q 032184 87 GLVRCCCCRGYRNPF-MEFVDNGKSF-----VCNFCGL 118 (145)
Q Consensus 87 ~~~RC~~C~aYiNp~-~~~~~~g~~w-----~C~lC~~ 118 (145)
...+|..|+--|-+- ..+...++.| +|..|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~ 41 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRA 41 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCC
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCC
Confidence 346677777655431 1223334444 5666665
No 73
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=26.46 E-value=27 Score=17.63 Aligned_cols=12 Identities=25% Similarity=0.897 Sum_probs=9.4
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 8 ~~~~~~C~~C~k 19 (42)
T 2epc_A 8 GETPYLCGQCGK 19 (42)
T ss_dssp SSCCEECSSSCC
T ss_pred CCCCeECCCCCc
Confidence 345699999998
No 74
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=26.36 E-value=57 Score=20.21 Aligned_cols=29 Identities=17% Similarity=0.380 Sum_probs=21.7
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
-++.+|..|++ |.. ++......+|..|+.
T Consensus 8 LeiL~CP~ck~---~L~-~~~~~g~LvC~~c~~ 36 (67)
T 2jny_A 8 LEVLACPKDKG---PLR-YLESEQLLVNERLNL 36 (67)
T ss_dssp TCCCBCTTTCC---BCE-EETTTTEEEETTTTE
T ss_pred HHHhCCCCCCC---cCe-EeCCCCEEEcCCCCc
Confidence 35889999999 333 344556799999998
No 75
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=26.36 E-value=24 Score=17.68 Aligned_cols=11 Identities=36% Similarity=1.090 Sum_probs=9.0
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.+.|..|+.
T Consensus 4 ~k~~~C~~C~k 14 (39)
T 1njq_A 4 PRSYTCSFCKR 14 (39)
T ss_dssp SSSEECTTTCC
T ss_pred CCceECCCCCc
Confidence 35689999998
No 76
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.21 E-value=27 Score=18.15 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=9.7
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|.+|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2ytf_A 9 GEKPFECSECQK 20 (46)
T ss_dssp CCCSEECSSSCC
T ss_pred CCCCcCCCCCCc
Confidence 345699999998
No 77
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.02 E-value=44 Score=20.08 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=20.1
Q ss_pred CeeeCCCCCceEcCceEEEeCCceE-----EeeCCCC
Q 032184 87 GLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (145)
Q Consensus 87 ~~~RC~~C~aYiNp~~~~~~~g~~w-----~C~lC~~ 118 (145)
...+|..|+-.|-+--.+.-.++.| +|..|+.
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~ 44 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSK 44 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCC
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCC
Confidence 3567888888776433344555555 5777766
No 78
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=25.92 E-value=46 Score=22.05 Aligned_cols=31 Identities=29% Similarity=0.660 Sum_probs=24.2
Q ss_pred CCeeeCCCCCceEc------------CceEEEeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRN------------PFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiN------------p~~~~~~~g~~w~C~lC~~ 118 (145)
.....|..|. |.. ++-..+-..+.|+|. |+.
T Consensus 13 ~~av~C~~C~-yt~~~~~~~C~~~~H~l~~~~a~KRFFkC~-C~~ 55 (92)
T 2kwq_A 13 CRVVTCKTCK-YTHFKPKETCVSENHDFHWHNGVKRFFKCP-CGN 55 (92)
T ss_dssp EEEEEETTTC-CEESSCCHHHHHTTCCEEEEEEECEEEECT-TSC
T ss_pred EEEEEccCCc-ceecCcchhHHhcCCceEEEeeeEEEEECC-CCC
Confidence 3478899998 664 556667778899998 998
No 79
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.85 E-value=14 Score=16.82 Aligned_cols=9 Identities=56% Similarity=1.231 Sum_probs=7.1
Q ss_pred eEEeeCCCC
Q 032184 110 SFVCNFCGL 118 (145)
Q Consensus 110 ~w~C~lC~~ 118 (145)
.|.|..|+.
T Consensus 2 ~~~C~~C~~ 10 (29)
T 1ard_A 2 SFVCEVCTR 10 (29)
T ss_dssp CCBCTTTCC
T ss_pred CeECCCCCc
Confidence 478888887
No 80
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.77 E-value=14 Score=16.65 Aligned_cols=9 Identities=22% Similarity=0.682 Sum_probs=7.1
Q ss_pred eEEeeCCCC
Q 032184 110 SFVCNFCGL 118 (145)
Q Consensus 110 ~w~C~lC~~ 118 (145)
.|.|..|+.
T Consensus 2 ~~~C~~C~~ 10 (29)
T 2m0e_A 2 EHKCPHCDK 10 (29)
T ss_dssp CCCCSSCCC
T ss_pred CCcCCCCCc
Confidence 477888887
No 81
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=25.72 E-value=20 Score=23.62 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=23.5
Q ss_pred CCeeeCCCCCceEcCceE-----EEeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFME-----FVDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~-----~~~~g~~w~C~lC~~ 118 (145)
..++.|..|-.....+|- -...| .|.|..|..
T Consensus 35 g~LL~CD~C~~~fH~~Cl~PpL~~~P~g-~W~C~~C~~ 71 (88)
T 1fp0_A 35 GDLVMCNQCEFCFHLDCHLPALQDVPGE-EWSCSLCHV 71 (88)
T ss_dssp SCCEECTTSSCEECTTSSSTTCCCCCSS-SCCCCSCCC
T ss_pred CCEEECCCCCCceecccCCCCCCCCcCC-CcCCccccC
Confidence 468999999887765553 22334 699999987
No 82
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.68 E-value=23 Score=17.36 Aligned_cols=11 Identities=36% Similarity=1.056 Sum_probs=8.8
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elo_A 7 GRSYSCPVCEK 17 (37)
T ss_dssp CCCCEETTTTE
T ss_pred CCCcCCCCCCC
Confidence 45689999987
No 83
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.66 E-value=29 Score=18.12 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=9.7
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2ytp_A 9 GERHYECSECGK 20 (46)
T ss_dssp CCCCEECSSSCC
T ss_pred CCCCeECCcCCc
Confidence 346799999998
No 84
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.56 E-value=17 Score=23.83 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=22.3
Q ss_pred CCeeeCCCCCce-EcCceEEE-eCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGY-RNPFMEFV-DNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aY-iNp~~~~~-~~g~~w~C~lC~~ 118 (145)
-.++.|+.|+|- ++-.|... .....|.|+.|..
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~l~~~~~~weC~~C~~ 78 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSSLRPNSKKWECNECLP 78 (85)
T ss_dssp TBCEECSSSCCCEECSGGGTCCTTCSCCCCTTTSC
T ss_pred EEEEeCcccCCchhHHHHhCCcCCCCCEECCcCcc
Confidence 458999999884 33444433 2566799999964
No 85
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=25.43 E-value=16 Score=18.05 Aligned_cols=11 Identities=36% Similarity=0.609 Sum_probs=7.9
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 9 ~k~~~C~~C~k 19 (37)
T 1p7a_A 9 IKPFQCPDCDR 19 (37)
T ss_dssp SSSBCCTTTCC
T ss_pred CCCccCCCCCc
Confidence 34578888886
No 86
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.38 E-value=22 Score=21.07 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=20.8
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceEEeeCCCCCCc
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGR 121 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~~~~ 121 (145)
.....|.+|+|- .....|.|--||+++.
T Consensus 12 ~~k~iCpkC~a~--------~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 12 FKKYVCLRCGAT--------NPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SSEEECTTTCCE--------ECTTCSSCSSSSSCCC
T ss_pred hCCccCCCCCCc--------CCCCceecCCCCCccc
Confidence 456789999997 2345699999998543
No 87
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.22 E-value=16 Score=17.78 Aligned_cols=11 Identities=45% Similarity=1.340 Sum_probs=8.3
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 7 ~~~~~C~~C~k 17 (36)
T 2elr_A 7 GKTHLCDMCGK 17 (36)
T ss_dssp CSSCBCTTTCC
T ss_pred CCCeecCcCCC
Confidence 35688888887
No 88
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.05 E-value=31 Score=17.96 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=9.7
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~~~~~C~~C~k 20 (46)
T 2emi_A 9 GERHYECSECGK 20 (46)
T ss_dssp SCCCEECSSSCC
T ss_pred CCCCCCCCCCCc
Confidence 346699999998
No 89
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.97 E-value=27 Score=17.86 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (44)
T 2eof_A 9 GEKPYECNECQK 20 (44)
T ss_dssp CCCSEECTTTCC
T ss_pred CCCCeECCCCCc
Confidence 345699999998
No 90
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=24.89 E-value=31 Score=26.86 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=18.9
Q ss_pred eCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 90 RCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 90 RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
-|.+|++-|- ....-+...|.|+-|..
T Consensus 242 pC~~CG~~I~--~~~~~gR~t~~CP~CQ~ 268 (268)
T 1k82_A 242 PCRVCGTPIV--ATKHAQRATFYCRQCQK 268 (268)
T ss_dssp BCTTTCCBCE--EEEETTEEEEECTTTCC
T ss_pred CCCCCCCEee--EEEECCCceEECCCCCC
Confidence 3999998763 22345677899999963
No 91
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=30.73 E-value=15 Score=16.83 Aligned_cols=9 Identities=33% Similarity=0.955 Sum_probs=7.7
Q ss_pred eEEeeCCCC
Q 032184 110 SFVCNFCGL 118 (145)
Q Consensus 110 ~w~C~lC~~ 118 (145)
.+.|..|+.
T Consensus 3 ~~~C~~C~k 11 (30)
T 2lvr_A 3 PYVCIHCQR 11 (30)
Confidence 588999998
No 92
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.85 E-value=84 Score=21.18 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=27.5
Q ss_pred eeCCCCCceEcCceEEEeCCceEEeeCCCCCCcc--CCCCCCCcc----CcceEEEEe
Q 032184 89 VRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRC--LDADERPEL----CRGTVEFAA 140 (145)
Q Consensus 89 ~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~~~~~--~~~~~rPEL----~~~tvE~~~ 140 (145)
.-|..|+.-|- | .+..+.|..|+.+... .=++-.-|| ..|++||..
T Consensus 33 ~~CP~Cq~eL~----~--~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC 84 (101)
T 2jne_A 33 LHCPQCQHVLD----Q--DNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFC 84 (101)
T ss_dssp CBCSSSCSBEE----E--ETTEEEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEE
T ss_pred ccCccCCCcce----e--cCCEEECccccchhhccccCcchhhHHHHHHHhcCcchhh
Confidence 67999998763 3 2447889999983221 112222233 378888864
No 93
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=24.78 E-value=30 Score=26.91 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=19.2
Q ss_pred eCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 90 RCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 90 RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
-|.+|++-|- ....-+...|.|+-|..
T Consensus 244 pC~~CG~~I~--~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 244 KCSRCGAEIQ--KIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp BCTTTCCBCE--EEEETTEEEEECTTTSC
T ss_pred CCCCCCCEee--EEEECCCceEECCCCCC
Confidence 3999998773 23345677899999974
No 94
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.56 E-value=16 Score=16.84 Aligned_cols=9 Identities=33% Similarity=0.925 Sum_probs=7.5
Q ss_pred eEEeeCCCC
Q 032184 110 SFVCNFCGL 118 (145)
Q Consensus 110 ~w~C~lC~~ 118 (145)
.+.|..|+.
T Consensus 2 ~~~C~~C~k 10 (29)
T 2lvt_A 2 PCQCVMCGK 10 (29)
Confidence 478999997
No 95
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.66 E-value=36 Score=21.08 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=20.9
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceE-----EeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w-----~C~lC~~ 118 (145)
....+|.+|+--|-+--.+.-.++.| +|..|+.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~ 50 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEA 50 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCC
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCC
Confidence 45678999988775422223345554 7888877
No 96
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=24.60 E-value=39 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=19.7
Q ss_pred eeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
.-+|.+|++.|=| .++..+|+.|+.
T Consensus 140 ~a~~~~~g~~m~~------~~~~~~cp~~g~ 164 (179)
T 3m7n_A 140 RALCSNCKTEMVR------EGDILKCPECGR 164 (179)
T ss_dssp ECBCTTTCCBCEE------CSSSEECSSSCC
T ss_pred EecccccCCceEE------CCCEEECCCCCC
Confidence 4789899988844 226799999998
No 97
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=24.51 E-value=43 Score=25.25 Aligned_cols=28 Identities=21% Similarity=0.500 Sum_probs=18.5
Q ss_pred eeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
-.+|..|++= .-|.-+ .+| .|+|+-||.
T Consensus 14 ~~~CP~Cg~~-d~~~~~-~dg-~~~C~~Cg~ 41 (255)
T 1nui_A 14 HIPCDNCGSS-DGNSLF-SDG-HTFCYVCEK 41 (255)
T ss_dssp EECCSSSCCS-SCEEEE-TTS-CEEETTTCC
T ss_pred CCcCCCCCCC-CCceEe-CCC-CeecccCCC
Confidence 4789999872 112212 345 499999998
No 98
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.43 E-value=31 Score=17.93 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=9.7
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|.+|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2emy_A 9 GENPYECHECGK 20 (46)
T ss_dssp SSCCEECSSSCC
T ss_pred CCcCcCCCCCCc
Confidence 446799999998
No 99
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.21 E-value=1.1e+02 Score=18.84 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=22.1
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceE-----EeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w-----~C~lC~~ 118 (145)
....+|.+|+-.|-.-. +.-.++.| +|..|+.
T Consensus 23 ~~~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~ 59 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAV-VKARDKYRHPECFVCADCNL 59 (89)
T ss_dssp CSCCBCTTTCCBCCSCC-EESSSCEECTTTCCCSSSCC
T ss_pred CcCCCcccCCCEecccE-EEECCceECccCCEecCCCC
Confidence 45688999998887632 44455555 6888877
No 100
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.08 E-value=31 Score=17.94 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=9.3
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ep3_A 10 EKPYRCAECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeECCCCCc
Confidence 45699999998
No 101
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=24.08 E-value=19 Score=21.56 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=21.7
Q ss_pred CCeeeCCCCCceEcCceEE----EeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEF----VDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~----~~~g~~w~C~lC~~ 118 (145)
..++.|..|......+|-- ......|.|..|..
T Consensus 21 g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 21 GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 5689999998776544321 11234699999964
No 102
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.98 E-value=32 Score=17.84 Aligned_cols=12 Identities=42% Similarity=1.077 Sum_probs=9.7
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2yts_A 9 GEKPYICNECGK 20 (46)
T ss_dssp SCCSEECSSSCC
T ss_pred CCcCEECCCCCh
Confidence 345699999998
No 103
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.95 E-value=33 Score=17.78 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=9.7
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~~~~~C~~C~k 20 (46)
T 2yrj_A 9 GEKPYRCGECGK 20 (46)
T ss_dssp CCCCEECSSSCC
T ss_pred CCCCeECCCCCC
Confidence 345699999998
No 104
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=23.93 E-value=69 Score=19.97 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=20.9
Q ss_pred eeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
-++|..|...---| ......-.|..|++
T Consensus 7 ~VKCp~C~niq~VF---ShA~tvV~C~~Cg~ 34 (66)
T 1qxf_A 7 KVKCPDCEHEQVIF---DHPSTIVKCIICGR 34 (66)
T ss_dssp EEECTTTCCEEEEE---SSCSSCEECSSSCC
T ss_pred EEECCCCCCceEEE---ecCceEEEcccCCC
Confidence 37899998765444 44566789999998
No 105
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.86 E-value=29 Score=17.58 Aligned_cols=12 Identities=33% Similarity=0.935 Sum_probs=9.4
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 8 ~~k~~~C~~C~k 19 (42)
T 2en2_A 8 GEKPYKCETCGA 19 (42)
T ss_dssp SSCSEECTTTCC
T ss_pred CCCCEeCCCcCh
Confidence 345689999987
No 106
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.85 E-value=66 Score=19.90 Aligned_cols=29 Identities=10% Similarity=0.222 Sum_probs=21.4
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
-++.+|..|++=+ . ++......+|..|+.
T Consensus 6 L~iL~CP~ck~~L---~-~~~~~~~LiC~~cg~ 34 (68)
T 2jr6_A 6 LDILVCPVTKGRL---E-YHQDKQELWSRQAKL 34 (68)
T ss_dssp SCCCBCSSSCCBC---E-EETTTTEEEETTTTE
T ss_pred hhheECCCCCCcC---e-EeCCCCEEEcCCCCc
Confidence 3588999999733 2 344556799999998
No 107
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.76 E-value=33 Score=17.85 Aligned_cols=12 Identities=33% Similarity=0.847 Sum_probs=9.6
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|.+|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2yto_A 9 GEKPYKCSDCGK 20 (46)
T ss_dssp SCCCEECSSSCC
T ss_pred CCCCEECcccCC
Confidence 345699999998
No 108
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=23.67 E-value=31 Score=26.84 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=20.2
Q ss_pred eeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 89 VRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 89 ~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
--|.+|++-|- ....-+...|.|+-|..
T Consensus 236 ~pC~~CG~~I~--~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVE--RRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCE--EEESSSCEEEECTTTTT
T ss_pred CCCCCCCCEee--EEEECCCceEECCCCCC
Confidence 34999998763 22345678899999986
No 109
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=23.53 E-value=17 Score=16.57 Aligned_cols=9 Identities=22% Similarity=1.298 Sum_probs=7.2
Q ss_pred eEEeeCCCC
Q 032184 110 SFVCNFCGL 118 (145)
Q Consensus 110 ~w~C~lC~~ 118 (145)
.|.|..|+.
T Consensus 2 ~~~C~~C~k 10 (30)
T 1klr_A 2 TYQCQYCEF 10 (30)
T ss_dssp CCCCSSSSC
T ss_pred CccCCCCCC
Confidence 478889987
No 110
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=23.50 E-value=46 Score=19.33 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=15.7
Q ss_pred eeeCCCCCceEcCceEEEeCCceE-----EeeCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w-----~C~lC~~ 118 (145)
..+|..|+--|-.- .+.-.++.| +|..|+.
T Consensus 5 ~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~ 39 (66)
T 1nyp_A 5 VPICGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEK 39 (66)
T ss_dssp CCEETTTTEECCSC-EECCTTSBEETTTCBCTTTCC
T ss_pred CCCCcccCCEecce-EEEECccccccCcCEECCCCC
Confidence 45677777665421 123334444 5666665
No 111
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=23.48 E-value=34 Score=26.48 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=18.5
Q ss_pred eCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 90 RCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 90 RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
-|.+|++-|- ....-+..+|.|+-|..
T Consensus 236 pC~~CG~~I~--~~~~~gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 236 PCERCGSIIE--KTTLSSRPFYWCPGCQH 262 (262)
T ss_dssp BCTTTCCBCE--EEEETTEEEEECTTTCC
T ss_pred CCCCCCCEeE--EEEECCCCeEECCCCCC
Confidence 3889988762 22344667899998863
No 112
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.45 E-value=33 Score=17.59 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=9.6
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 7 ~~k~~~C~~C~k 18 (44)
T 2emx_A 7 GEKPFGCSCCEK 18 (44)
T ss_dssp SCCCEECSSSSC
T ss_pred CCcCccCCCCCc
Confidence 345699999998
No 113
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.34 E-value=32 Score=17.82 Aligned_cols=12 Identities=42% Similarity=0.944 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2eow_A 9 GEKPYKCNECGK 20 (46)
T ss_dssp CCCCEECTTSCC
T ss_pred CCCCeeccccCC
Confidence 345699999998
No 114
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=23.29 E-value=34 Score=26.68 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=18.6
Q ss_pred eeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 89 VRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 89 ~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
--|.+|++-|- -...-++..|.|+-|..
T Consensus 246 ~pC~~CG~~I~--~~~~~gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 246 NPCKRCGTPIE--KTVVAGRGTHYCPRCQR 273 (273)
T ss_dssp SBCTTTCCBCE--EEEETTEEEEECTTTCC
T ss_pred CCCCCCCCeEE--EEEECCCCeEECCCCCC
Confidence 35899988652 22234566899999963
No 115
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.27 E-value=33 Score=17.73 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.+.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (44)
T 2epv_A 9 GEKPYECNECGK 20 (44)
T ss_dssp CCCSEECSSSCC
T ss_pred CCcCeECCCCCc
Confidence 345699999998
No 116
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=23.25 E-value=64 Score=19.97 Aligned_cols=28 Identities=21% Similarity=0.511 Sum_probs=20.9
Q ss_pred CeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 87 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
++.+|..|++=+ . ++......+|..|+.
T Consensus 7 ~iL~CP~ck~~L---~-~~~~~~~LiC~~cg~ 34 (68)
T 2hf1_A 7 EILVCPLCKGPL---V-FDKSKDELICKGDRL 34 (68)
T ss_dssp EECBCTTTCCBC---E-EETTTTEEEETTTTE
T ss_pred hheECCCCCCcC---e-EeCCCCEEEcCCCCc
Confidence 488999999733 2 344556799999998
No 117
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.23 E-value=23 Score=21.95 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=18.7
Q ss_pred eeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
.-+|.+|++-+..- .+..-+|..||.
T Consensus 21 ~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~ 46 (63)
T 3h0g_L 21 IYLCADCGARNTIQ-----AKEVIRCRECGH 46 (63)
T ss_dssp CCBCSSSCCBCCCC-----SSSCCCCSSSCC
T ss_pred EEECCCCCCeeecC-----CCCceECCCCCc
Confidence 46888888877522 345688999988
No 118
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=23.21 E-value=24 Score=22.36 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=11.4
Q ss_pred CeeeCCCCCceEcC
Q 032184 87 GLVRCCCCRGYRNP 100 (145)
Q Consensus 87 ~~~RC~~C~aYiNp 100 (145)
-|+||-.|+..|.-
T Consensus 3 iPVRCFTCGkvi~~ 16 (70)
T 1twf_J 3 VPVRCFSCGKVVGD 16 (70)
T ss_dssp CCSBCTTTCCBCTT
T ss_pred CCeecCCCCCChHH
Confidence 37999999998853
No 119
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.17 E-value=24 Score=25.02 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=17.8
Q ss_pred eeeCCCCCceEcCceEEEeCCceEEeeCCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD 119 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~~ 119 (145)
.-||..|+....-. ...-.|+.||+.
T Consensus 132 ~y~C~~Cg~~~~~~------~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL------PPGGVCPDCGSK 157 (165)
T ss_dssp CEEESSSCCEESSC------CGGGBCTTTCCB
T ss_pred EEECCCCCCcccCC------CCCCcCCCCCCc
Confidence 57899998776533 222389999983
No 120
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.08 E-value=34 Score=17.81 Aligned_cols=12 Identities=50% Similarity=1.088 Sum_probs=9.7
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2emf_A 9 GGKHFECTECGK 20 (46)
T ss_dssp SSCCEECSSSCC
T ss_pred CCCCeECCCCCc
Confidence 345699999998
No 121
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=23.02 E-value=44 Score=21.47 Aligned_cols=18 Identities=0% Similarity=0.001 Sum_probs=15.8
Q ss_pred ceEEEeCCceEEeeCCCC
Q 032184 101 FMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 101 ~~~~~~~g~~w~C~lC~~ 118 (145)
|-++.+...+|+|.|..-
T Consensus 39 ydKV~R~KnkWKc~LKdG 56 (76)
T 1nvp_C 39 YDKIHRSKNKWKFHLKDG 56 (76)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred EEEEeccCceEEEEEecc
Confidence 899999999999999654
No 122
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.84 E-value=34 Score=17.74 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=9.7
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2eml_A 9 GEKPYECSVCGK 20 (46)
T ss_dssp SCCSEECSSSCC
T ss_pred CCCCeeCCCcCC
Confidence 456799999998
No 123
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=22.70 E-value=35 Score=20.54 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=19.7
Q ss_pred eeeCCCCCceEcCceEEEeCCceEEe
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSFVC 113 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w~C 113 (145)
-=.|..|..|+..---+..+|+ +.|
T Consensus 7 kCaC~~C~c~Vs~~eai~~dGK-~YC 31 (55)
T 1jjd_A 7 KCACEPCLCNVDPSKAIDRNGL-YYC 31 (55)
T ss_dssp CCSSTTCCCCBCTTTSEESSSC-EES
T ss_pred eecCCCCeeEechHHhhhcCCe-EEe
Confidence 3468999999998777788887 666
No 124
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=22.68 E-value=33 Score=17.86 Aligned_cols=12 Identities=42% Similarity=0.877 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2emj_A 9 GEKPFECAECGK 20 (46)
T ss_dssp CCCSEECSSSSC
T ss_pred CCCCEECCCCCc
Confidence 345699999998
No 125
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.63 E-value=34 Score=17.58 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=9.0
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2yu5_A 10 ENPFKCSKCDR 20 (44)
T ss_dssp CCSEECSSSSC
T ss_pred CCCeECCCCCc
Confidence 45699999998
No 126
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=22.58 E-value=27 Score=22.46 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=9.2
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
...|+|.+|..
T Consensus 15 ~~tWVCpICsf 25 (76)
T 2j9u_B 15 VSTWVCPICMV 25 (76)
T ss_dssp CEEEECTTTCC
T ss_pred ccceECccccc
Confidence 34699999997
No 127
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.54 E-value=34 Score=17.83 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2em4_A 9 GQRPYECIECGK 20 (46)
T ss_dssp CSSSEECSSSCC
T ss_pred CCcCcCCCCCCC
Confidence 345699999998
No 128
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.50 E-value=35 Score=17.72 Aligned_cols=11 Identities=45% Similarity=1.138 Sum_probs=9.1
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2en3_A 10 EKPFQCKECGM 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCcccCh
Confidence 45699999998
No 129
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.30 E-value=36 Score=17.67 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~~~~~C~~C~k 20 (46)
T 2em3_A 9 GEKPYECKVCSK 20 (46)
T ss_dssp SCCSEECSSSCC
T ss_pred CCcCeECCCCCc
Confidence 345699999998
No 130
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=22.24 E-value=61 Score=18.85 Aligned_cols=22 Identities=18% Similarity=0.535 Sum_probs=16.7
Q ss_pred eeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
-..|..|...+ |.+|+|..|.-
T Consensus 6 ~~~Cd~C~~~i---------g~R~~C~~C~d 27 (52)
T 1tot_A 6 VYTCNECKHHV---------ETRWHCTVCED 27 (52)
T ss_dssp CEEETTTTEEE---------SSEEEESSSSS
T ss_pred EEECCCCCCCC---------cceEEcCCCCC
Confidence 36799998752 45799999975
No 131
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.21 E-value=37 Score=17.66 Aligned_cols=12 Identities=33% Similarity=0.886 Sum_probs=9.6
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2eoo_A 9 GERPYGCNECGK 20 (46)
T ss_dssp CCCCEECSSSCC
T ss_pred CCCCEEccccCc
Confidence 345699999998
No 132
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.20 E-value=33 Score=17.60 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (44)
T 2emb_A 9 TRKRYECSKCQA 20 (44)
T ss_dssp CCSSEECTTTCC
T ss_pred CCCCeECCCCCC
Confidence 345699999998
No 133
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=21.99 E-value=87 Score=18.16 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=18.4
Q ss_pred eeeCCCCCceEcCceEEEe------CCceEEeeCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVD------NGKSFVCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~------~g~~w~C~lC~~ 118 (145)
-.+|.+|+.=---|.+... ....|+|.-|++
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~ 51 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGH 51 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCC
Confidence 4679999872222333321 123589999987
No 134
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.83 E-value=36 Score=17.68 Aligned_cols=12 Identities=42% Similarity=0.913 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2em2_A 9 GEKPFKCKECGK 20 (46)
T ss_dssp CCCSEECSSSCC
T ss_pred CCCCEECCcCCc
Confidence 345699999998
No 135
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.67 E-value=37 Score=17.60 Aligned_cols=12 Identities=33% Similarity=0.994 Sum_probs=9.6
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2ep2_A 9 GEKPYECSICGK 20 (46)
T ss_dssp CCCSEECSSSCC
T ss_pred CCcCcCCCCCCc
Confidence 345699999998
No 136
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.66 E-value=34 Score=17.74 Aligned_cols=12 Identities=25% Similarity=1.082 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2emh_A 9 GERPYICTVCGK 20 (46)
T ss_dssp CCCSEECTTTCC
T ss_pred CCCCcCCCCCCc
Confidence 345699999998
No 137
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=21.40 E-value=49 Score=21.39 Aligned_cols=25 Identities=12% Similarity=0.336 Sum_probs=20.1
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
..++-|. |-++.+...+|+|.|..-
T Consensus 34 ~n~vlC~--------ydKV~R~KnKWKc~LKdG 58 (79)
T 1nh2_C 34 ENLMLCL--------YDKVTRTKARWKCSLKDG 58 (79)
T ss_dssp CCEEEEE--------EEEEEEETTEEEEEEEEE
T ss_pred CcEEEEE--------EEEEeeecceEEEEEeee
Confidence 3466676 999999999999999654
No 138
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.39 E-value=38 Score=17.54 Aligned_cols=11 Identities=36% Similarity=1.038 Sum_probs=9.2
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytj_A 10 EKPYICAECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCh
Confidence 45699999998
No 139
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=21.38 E-value=24 Score=21.31 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=10.6
Q ss_pred CeeeCCCCCceEc
Q 032184 87 GLVRCCCCRGYRN 99 (145)
Q Consensus 87 ~~~RC~~C~aYiN 99 (145)
-|+||-.|+..|.
T Consensus 2 iPVRCFTCGkvi~ 14 (55)
T 1ef4_A 2 IPVRCLSCGKPVS 14 (55)
T ss_dssp CSSSCSCTTSCCH
T ss_pred CCeecCCCCCChh
Confidence 3789999998774
No 140
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.22 E-value=37 Score=17.58 Aligned_cols=12 Identities=42% Similarity=0.944 Sum_probs=9.6
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2ene_A 9 GEKPYKCNECGK 20 (46)
T ss_dssp CSSSEECSSSCC
T ss_pred CCCCeECCCCCc
Confidence 345699999998
No 141
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.18 E-value=38 Score=17.60 Aligned_cols=12 Identities=42% Similarity=1.074 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2eoz_A 9 GEKPYSCNVCGK 20 (46)
T ss_dssp SCCSEEETTTTE
T ss_pred CCCCeECcccCh
Confidence 345699999997
No 142
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=21.15 E-value=54 Score=18.18 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=11.3
Q ss_pred CCeeeCCCCCceEcC
Q 032184 86 SGLVRCCCCRGYRNP 100 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp 100 (145)
.+..+|.+|+..|..
T Consensus 7 ~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 7 EDQVPCEKCGSLVPV 21 (39)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCCcccccccCcCCc
Confidence 456789999988753
No 143
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=21.02 E-value=15 Score=20.99 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=22.1
Q ss_pred CCeeeCCCCCceEcCceEE----EeCCceEEeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEF----VDNGKSFVCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~----~~~g~~w~C~lC~~ 118 (145)
..++.|..|......++-- ......|.|..|..
T Consensus 13 ~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 13 DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4689999998877655431 11234699999964
No 144
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.97 E-value=79 Score=19.68 Aligned_cols=33 Identities=21% Similarity=0.581 Sum_probs=23.0
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceE-----EeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w-----~C~lC~~ 118 (145)
....+|.+|+-.|-+--.+...++.| +|..|+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~ 50 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNN 50 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCC
T ss_pred CCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCC
Confidence 34679999999886533345566665 6788877
No 145
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.90 E-value=40 Score=17.23 Aligned_cols=12 Identities=50% Similarity=1.063 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~~~~~C~~C~k 20 (44)
T 2eox_A 9 DSKSYNCNECGK 20 (44)
T ss_dssp CCCCEEETTTTE
T ss_pred CCCCeECcccCc
Confidence 345699999997
No 146
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=20.90 E-value=52 Score=23.97 Aligned_cols=31 Identities=3% Similarity=-0.368 Sum_probs=23.5
Q ss_pred eeeCCCCCc-----eEcCceEEEeCC------ceEEeeCCCC
Q 032184 88 LVRCCCCRG-----YRNPFMEFVDNG------KSFVCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~a-----YiNp~~~~~~~g------~~w~C~lC~~ 118 (145)
-++|.+|+- |||.+-+.+-.| -.|+|-+|++
T Consensus 37 kvkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~r 78 (164)
T 1zso_A 37 NIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPK 78 (164)
T ss_dssp EEEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSC
T ss_pred EEEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCC
Confidence 489999984 788877765433 3589999998
No 147
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.87 E-value=39 Score=17.45 Aligned_cols=12 Identities=42% Similarity=0.999 Sum_probs=9.6
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (45)
T 2epu_A 9 GQKPFECTHCGK 20 (45)
T ss_dssp SCCSEEETTTTE
T ss_pred CCcCccCCCCCC
Confidence 345699999998
No 148
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.83 E-value=40 Score=17.51 Aligned_cols=12 Identities=42% Similarity=0.811 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2eoy_A 9 KEKCFKCNKCEK 20 (46)
T ss_dssp CSCCEECSSSCC
T ss_pred CCCCEECcCCCC
Confidence 345699999998
No 149
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.82 E-value=37 Score=17.60 Aligned_cols=12 Identities=42% Similarity=0.902 Sum_probs=9.8
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~~~~~C~~C~k 20 (46)
T 2ytg_A 9 GEKPFKCGECGK 20 (46)
T ss_dssp SCCSEECTTTCC
T ss_pred CCCCeECCCCCc
Confidence 446799999998
No 150
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.79 E-value=47 Score=20.13 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=17.6
Q ss_pred eeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (145)
Q Consensus 88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~ 118 (145)
++.|..|+... ..|.+|+|..|..
T Consensus 11 ~~~Cd~C~~~p-------i~G~RykC~~C~d 34 (63)
T 2e5r_A 11 PVECSYCHSES-------MMGFRYRCQQCHN 34 (63)
T ss_dssp CSCCSSSCCCS-------SCSCEEEESSCSS
T ss_pred CCCCcCCCCcc-------eecceEEecCCCC
Confidence 38899998651 1356799988865
No 151
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.63 E-value=39 Score=17.56 Aligned_cols=12 Identities=42% Similarity=0.786 Sum_probs=9.7
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|.+|+.
T Consensus 9 ~~~~~~C~~C~k 20 (46)
T 2em5_A 9 STKSHQCHECGR 20 (46)
T ss_dssp CSCSEECSSSCC
T ss_pred CCCCeECCcCCC
Confidence 345699999998
No 152
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.61 E-value=40 Score=17.39 Aligned_cols=12 Identities=33% Similarity=0.689 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2epw_A 9 GEKPCKCTECGK 20 (46)
T ss_dssp CCCSEECSSSCC
T ss_pred CCCCeeCCCCCC
Confidence 345699999998
No 153
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=20.53 E-value=41 Score=17.40 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2ema_A 9 GEKRYKCNECGK 20 (46)
T ss_dssp TSCCEECSSSCC
T ss_pred CCcCcCCCCCcc
Confidence 345699999998
No 154
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=20.51 E-value=20 Score=19.58 Aligned_cols=10 Identities=40% Similarity=1.022 Sum_probs=6.2
Q ss_pred ceEEeeCCCC
Q 032184 109 KSFVCNFCGL 118 (145)
Q Consensus 109 ~~w~C~lC~~ 118 (145)
+.|.|..|+.
T Consensus 3 ~~~~C~~C~~ 12 (57)
T 3uk3_C 3 SSRECSYCGK 12 (57)
T ss_dssp --CBCTTTCC
T ss_pred CCccCCCCcc
Confidence 4577888876
No 155
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.44 E-value=38 Score=17.51 Aligned_cols=11 Identities=36% Similarity=0.914 Sum_probs=9.0
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eor_A 10 EKPYNCEECGK 20 (46)
T ss_dssp CCSEECTTTCC
T ss_pred CcCccCCCCCC
Confidence 45689999998
No 156
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.42 E-value=57 Score=19.82 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=22.0
Q ss_pred CCeeeCCCCCceEcCceEEEeCCceE-----EeeCCCC
Q 032184 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (145)
Q Consensus 86 ~~~~RC~~C~aYiNp~~~~~~~g~~w-----~C~lC~~ 118 (145)
....+|..|+-.|-.- .+.-.++.| +|..|+.
T Consensus 13 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~ 49 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV-FVKLRDRHRHPECYVCTDCGT 49 (79)
T ss_dssp CCCCCCSSSCCCCCSS-CEECSSCEECTTTTSCSSSCC
T ss_pred CCCCccccCCCCccCc-EEEECcceeCcCcCeeCCCCC
Confidence 4568999999887653 344455666 6777777
No 157
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=20.34 E-value=40 Score=17.52 Aligned_cols=12 Identities=17% Similarity=0.559 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2el6_A 9 GVNPYKCSQCEK 20 (46)
T ss_dssp CCCSEECSSSSC
T ss_pred CCCCeECCCCCc
Confidence 345699999998
No 158
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.15 E-value=41 Score=17.41 Aligned_cols=12 Identities=42% Similarity=0.944 Sum_probs=9.5
Q ss_pred CCceEEeeCCCC
Q 032184 107 NGKSFVCNFCGL 118 (145)
Q Consensus 107 ~g~~w~C~lC~~ 118 (145)
+.+.|.|..|+.
T Consensus 9 ~~~~~~C~~C~k 20 (46)
T 2ytk_A 9 GEKPYKCNECGK 20 (46)
T ss_dssp SSCSEECSSSCC
T ss_pred CCCCEeCCcCCC
Confidence 345699999998
No 159
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.05 E-value=42 Score=17.30 Aligned_cols=11 Identities=45% Similarity=1.395 Sum_probs=9.1
Q ss_pred CceEEeeCCCC
Q 032184 108 GKSFVCNFCGL 118 (145)
Q Consensus 108 g~~w~C~lC~~ 118 (145)
.+.|.|..|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eme_A 10 EKPYVCDYCGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeECCCCCh
Confidence 45699999998
Done!