Query 032185
Match_columns 145
No_of_seqs 131 out of 1068
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 10:44:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4824 Apolipoprotein D/Lipoc 100.0 1.2E-35 2.5E-40 220.4 10.1 144 1-145 30-224 (224)
2 PF08212 Lipocalin_2: Lipocali 100.0 1.4E-29 3.1E-34 182.5 13.1 105 13-119 1-143 (143)
3 COG3040 Blc Bacterial lipocali 100.0 9.3E-29 2E-33 179.9 11.5 115 5-121 23-173 (174)
4 PRK10477 outer membrane lipopr 100.0 6.1E-29 1.3E-33 185.2 10.4 116 4-121 25-176 (177)
5 PF07137 VDE: Violaxanthin de- 99.4 8.1E-12 1.8E-16 93.1 11.5 116 6-125 27-192 (198)
6 PF00061 Lipocalin: Lipocalin 99.2 2E-11 4.4E-16 86.1 5.4 102 19-121 1-144 (144)
7 PLN02372 violaxanthin de-epoxi 98.9 3.2E-08 6.8E-13 81.4 10.9 115 8-127 196-361 (455)
8 PF02087 Nitrophorin: Nitropho 98.1 8.2E-05 1.8E-09 54.7 11.1 118 5-125 3-172 (178)
9 PF11032 ApoM: Apolipoprotein 98.0 0.00013 2.9E-09 54.8 11.7 115 3-120 22-178 (186)
10 PF03973 Triabin: Triabin; In 94.9 0.017 3.6E-07 42.0 1.8 26 3-28 11-37 (148)
11 PF08400 phage_tail_N: Prophag 84.6 4.2 9.1E-05 29.1 5.9 61 43-106 48-112 (134)
12 PF00356 LacI: Bacterial regul 82.4 0.88 1.9E-05 26.4 1.4 28 85-112 19-46 (46)
13 PF15060 PPDFL: Differentiatio 81.5 0.91 2E-05 31.1 1.4 16 130-145 47-62 (110)
14 PF10346 Con-6: Conidiation pr 64.1 12 0.00025 20.7 2.8 21 88-108 15-35 (36)
15 PF12992 DUF3876: Domain of un 59.5 29 0.00062 23.3 4.7 28 1-31 1-28 (95)
16 PF08247 ENOD40: ENOD40 protei 57.9 6.3 0.00014 16.3 0.8 10 136-145 3-12 (12)
17 PF07215 DUF1419: Protein of u 54.4 5.9 0.00013 27.2 0.7 12 16-27 39-50 (111)
18 PRK10727 DNA-binding transcrip 52.3 14 0.00029 29.4 2.7 30 85-114 21-50 (343)
19 PRK09492 treR trehalose repres 51.3 15 0.00033 28.5 2.8 29 85-113 24-52 (315)
20 smart00354 HTH_LACI helix_turn 50.7 17 0.00037 22.4 2.4 29 85-113 20-48 (70)
21 PRK10703 DNA-binding transcrip 49.5 14 0.00031 29.1 2.3 29 85-113 21-49 (341)
22 PRK05417 glutathione-dependent 47.4 57 0.0012 24.7 5.2 21 91-111 146-166 (191)
23 PRK09526 lacI lac repressor; R 46.9 18 0.0004 28.4 2.6 29 85-113 25-53 (342)
24 cd01392 HTH_LacI Helix-turn-he 46.1 19 0.0004 20.4 1.9 29 86-114 18-46 (52)
25 TIGR03067 Planc_TIGR03067 Plan 45.8 44 0.00096 22.6 4.1 17 14-30 3-19 (107)
26 PRK10401 DNA-binding transcrip 45.6 18 0.00038 28.7 2.4 29 85-113 21-49 (346)
27 PRK10014 DNA-binding transcrip 45.1 24 0.00052 27.8 3.1 29 85-113 26-54 (342)
28 PRK14987 gluconate operon tran 44.3 24 0.00052 27.7 2.9 30 85-114 25-54 (331)
29 TIGR01481 ccpA catabolite cont 44.2 20 0.00043 28.1 2.4 29 85-113 21-49 (329)
30 PRK10423 transcriptional repre 44.1 20 0.00043 28.0 2.4 30 85-114 18-47 (327)
31 COG1609 PurR Transcriptional r 43.0 21 0.00045 28.8 2.4 29 85-113 20-48 (333)
32 PF14794 DUF4479: Domain of un 40.6 30 0.00065 22.0 2.4 21 91-111 47-67 (73)
33 PF01402 RHH_1: Ribbon-helix-h 39.0 5.1 0.00011 21.6 -1.2 24 91-114 5-28 (39)
34 PF12651 RHH_3: Ribbon-helix-h 38.5 13 0.00028 21.2 0.4 25 91-115 8-32 (44)
35 TIGR02384 RelB_DinJ addiction 37.8 28 0.0006 22.6 2.0 23 91-113 8-30 (83)
36 PF11012 DUF2850: Protein of u 37.6 1.1E+02 0.0025 19.7 5.1 25 18-51 2-26 (79)
37 TIGR02417 fruct_sucro_rep D-fr 37.5 29 0.00063 27.1 2.4 29 85-113 19-50 (327)
38 PRK11235 bifunctional antitoxi 37.4 26 0.00056 22.7 1.8 22 92-113 8-29 (80)
39 PRK10339 DNA-binding transcrip 36.7 37 0.00081 26.6 2.9 29 85-113 21-51 (327)
40 PF04221 RelB: RelB antitoxin; 36.0 18 0.00039 23.2 0.9 22 92-113 8-29 (83)
41 PRK11303 DNA-binding transcrip 33.6 37 0.0008 26.5 2.4 29 85-113 20-51 (328)
42 COG3077 RelB DNA-damage-induci 33.1 31 0.00068 22.9 1.6 24 91-114 10-33 (88)
43 TIGR02405 trehalos_R_Ecol treh 32.9 38 0.00083 26.4 2.4 29 85-113 21-49 (311)
44 PF04170 NlpE: NlpE N-terminal 32.3 1.4E+02 0.003 19.2 5.7 25 36-60 7-33 (87)
45 TIGR03066 Gem_osc_para_1 Gemma 32.2 1.7E+02 0.0037 20.2 5.8 37 8-55 13-49 (111)
46 COG0450 AhpC Peroxiredoxin [Po 32.1 27 0.00059 26.5 1.4 28 12-42 25-52 (194)
47 TIGR01911 HesB_rel_seleno HesB 30.6 74 0.0016 20.9 3.1 34 91-124 5-39 (92)
48 smart00733 Mterf Mitochondrial 30.5 63 0.0014 15.3 2.3 19 92-110 13-31 (31)
49 PF10681 Rot1: Chaperone for p 29.8 1E+02 0.0022 23.7 4.1 31 22-55 43-83 (212)
50 PHA01748 hypothetical protein 29.7 26 0.00057 21.2 0.8 24 91-114 8-31 (60)
51 PRK11041 DNA-binding transcrip 29.1 56 0.0012 25.1 2.8 23 91-113 3-25 (309)
52 PF08333 DUF1725: Protein of u 27.6 12 0.00026 17.9 -0.8 10 17-26 2-11 (20)
53 PLN02289 ribulose-bisphosphate 27.2 1.7E+02 0.0036 21.9 4.7 58 80-138 64-122 (176)
54 PF00816 Histone_HNS: H-NS his 25.8 31 0.00067 22.5 0.7 22 93-114 22-43 (93)
55 PF07530 PRE_C2HC: Associated 24.2 1.1E+02 0.0023 19.0 2.9 47 98-144 2-54 (68)
56 KOG1120 Fe-S cluster biosynthe 23.8 1.3E+02 0.0029 21.3 3.5 53 85-137 23-90 (134)
57 PHA01623 hypothetical protein 23.8 34 0.00074 20.5 0.5 24 91-114 19-42 (56)
58 PF08092 Toxin_22: Magi peptid 22.7 45 0.00098 18.5 0.8 10 134-143 24-33 (38)
59 cd04871 ACT_PSP_2 ACT domains 22.5 72 0.0016 20.4 1.9 31 85-117 4-34 (84)
60 PF02662 FlpD: Methyl-viologen 21.7 1.1E+02 0.0024 21.1 2.9 26 92-117 74-99 (124)
61 PF04947 Pox_VLTF3: Poxvirus L 21.4 74 0.0016 23.6 2.0 29 85-113 23-52 (171)
62 PF02836 Glyco_hydro_2_C: Glyc 20.2 3.5E+02 0.0075 21.1 5.8 50 52-110 1-51 (298)
63 cd02641 R3H_Smubp-2_like R3H d 20.1 1.6E+02 0.0036 17.6 3.1 22 89-110 23-44 (60)
No 1
>KOG4824 consensus Apolipoprotein D/Lipocalin [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.2e-35 Score=220.37 Aligned_cols=144 Identities=44% Similarity=0.724 Sum_probs=132.6
Q ss_pred CCCCCCCcccCCCCccccceeeEEEeEeCCcCCCCCCcceEEEEEECC-CCcEEEEEeEEe--CCeeeEEeeeEEEcCCC
Q 032185 1 MASKKEMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNE-DGTVHVRNETWS--DGKRGSIEGTAYKADPK 77 (145)
Q Consensus 1 ~~~~p~v~~~~~Fdl~ry~G~WYeiar~p~~~e~~~~~c~~a~Y~~~~-~g~i~V~n~~~~--~G~~~~~~G~a~~~~~~ 77 (145)
|+-||+++++++||++||+|+|||||++|..||... -|.+..|++.. ||.|.|.|.|+. +|....++|.|++++++
T Consensus 30 lg~cpnypv~knFnv~RylGrWYEVas~p~~fe~~~-gctt~~y~~~nkngkI~Vln~~v~r~dG~~n~ieG~atpvn~~ 108 (224)
T KOG4824|consen 30 LGECPNYPVAKNFNVERYLGRWYEVASFPRGFEGKG-GCTTGAYTFDNKNGKIHVLNECVHRPDGKINFIEGKATPVNED 108 (224)
T ss_pred eccCCCCccccCCChhhhcceeeeeeccccccccCC-CceeeeeEecCCCceEEEeeeeeecCCCccceeeeeeeecCCc
Confidence 678999999999999999999999999999999874 59999998874 999999999994 99999999999999866
Q ss_pred CCcceeE------------------------------------------------EeecCCCCCHHHHHHHHHHHHhcCC
Q 032185 78 SDEAKLK------------------------------------------------ILCREPHMDEAIYNQLVEKATSEGY 109 (145)
Q Consensus 78 ~~~~kl~------------------------------------------------IlsR~p~l~~~~~~~~~~~~~~~G~ 109 (145)
.+.+.++ ||||+|++.++.++++.++|.+.|+
T Consensus 109 s~k~e~kf~~~~p~~~~~~l~~~~iy~Vl~tdyenya~~ysc~alisl~h~df~wIlsRtpn~epEt~~klkn~l~~~gy 188 (224)
T KOG4824|consen 109 SDKAELKFEFQEPIFEKCFLRFPPIYFVLGTDYENYADDYSCHALISLKHKDFLWILSRTPNMEPETIAKLKNKLAEEGY 188 (224)
T ss_pred hhhhcceeEEecCchHhhccCCCCCcceecccHhheeccccccceeccCCCceEEEEecCCCCChHHHHHHHHHHHHcCC
Confidence 3323222 9999999999999999999999999
Q ss_pred CCCCeEEcCCCCCCCCcCCCCCCCCceeEEeeccCC
Q 032185 110 DVSKLHRTPQSDNPPEAEESPQDTKGIWWIKSIFGK 145 (145)
Q Consensus 110 d~~~l~~~~q~~c~~~~~~~~~~~~~~~~~~~~~~~ 145 (145)
|+++|..++|++|+++..+++.|.||.||-||+|||
T Consensus 189 DpeKl~~Tpq~dcp~~s~~~~~~~~~~~~~~sl~~~ 224 (224)
T KOG4824|consen 189 DPEKLHDTPQSDCPPESAEAAADMKGPGMEKSLFGK 224 (224)
T ss_pred CHHHhccCCccCCChhhhhhHHhccCcchhhhhccC
Confidence 999999999999999999999999999999999997
No 2
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=99.97 E-value=1.4e-29 Score=182.52 Aligned_cols=105 Identities=50% Similarity=0.812 Sum_probs=85.1
Q ss_pred CCccccceeeEEEeEeCCcCCCCCCcceEEEEEECCCCcEEEEEeEEe-CCeeeEEeeeEEEcCCCCCcceeE-------
Q 032185 13 LDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS-DGKRGSIEGTAYKADPKSDEAKLK------- 84 (145)
Q Consensus 13 Fdl~ry~G~WYeiar~p~~~e~~~~~c~~a~Y~~~~~g~i~V~n~~~~-~G~~~~~~G~a~~~~~~~~~~kl~------- 84 (145)
|||+||+|+||||||+|+.||.+| .|++++|++.++|.|.|.|+|+. +|+...+.|.|++.++. .+|+|+
T Consensus 1 ~Dl~rY~G~WYEiar~p~~~q~~~-~~~~a~Yt~~~dg~i~V~n~~~~~~g~~~~~~g~a~~~~~~-~~~~l~V~f~~~~ 78 (143)
T PF08212_consen 1 VDLDRYMGTWYEIARYPNFFQRGC-VCVTAEYTLRDDGTISVRNSCRRPDGKIKTIRGTATVVDPS-GPAKLKVRFPGIP 78 (143)
T ss_dssp --CCCC-EEEEEEEEE--CCCTT--ECEEEEEEE-TTS-EEEEEEEEETTTCCCEEEEEEEESSBT-TSSEEEEESST--
T ss_pred CChHHcCEeeeEEEEECCccccee-eeeeeeEEEcCCCEEEEEEEEEcCCCCEEEEEeEEEEcCCC-CccEEEEEEeccc
Confidence 799999999999999999999865 89999999999999999999996 99999999999998876 368775
Q ss_pred ------------------------------EeecCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCC
Q 032185 85 ------------------------------ILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQ 119 (145)
Q Consensus 85 ------------------------------IlsR~p~l~~~~~~~~~~~~~~~G~d~~~l~~~~q 119 (145)
||||+|+|+++.+++++++++++|||+++|++|+|
T Consensus 79 ~~~~~~YwVl~~D~dY~~~iv~~~~~~~~WILsR~p~~~~~~~~~~~~~~~~~G~d~~~l~~~~Q 143 (143)
T PF08212_consen 79 FPPKGNYWVLYTDYDYSWAIVGSPDREYLWILSRTPQLSEETYAEILDRAKQQGYDVSKLIWTPQ 143 (143)
T ss_dssp -TEEEEEEEEEEBTTSSEEEEEECCCCEEEEEESSSS--HHHHHHHHHHHHHTT--GGGEEE---
T ss_pred cCCCcceEEEEEcCCccEEEEecCCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCHHHeEECCC
Confidence 99999999999999999999999999999999988
No 3
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=9.3e-29 Score=179.94 Aligned_cols=115 Identities=37% Similarity=0.635 Sum_probs=105.0
Q ss_pred CCCcccCCCCccccceeeEEEeEeCCcCCCCCCcceEEEEEECCCCcEEEEEeEEe-CC-eeeEEeeeEEEcCCCCCcce
Q 032185 5 KEMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS-DG-KRGSIEGTAYKADPKSDEAK 82 (145)
Q Consensus 5 p~v~~~~~Fdl~ry~G~WYeiar~p~~~e~~~~~c~~a~Y~~~~~g~i~V~n~~~~-~G-~~~~~~G~a~~~~~~~~~~k 82 (145)
..++++.+|||++|+|+||||||+|..||++| ..++|+|++.+++.|.|.|.|+. ++ +++.+.|+|+++++. ..++
T Consensus 23 ~~p~~~~~~dl~~Y~G~WyEvaR~p~~f~~gc-~~vtA~Y~l~d~~~I~V~n~c~~~~~~~~~~ieGkA~i~~~~-~~a~ 100 (174)
T COG3040 23 ASPKPVNNFDLQRYLGKWYEVARLPMRFEKGC-VQVTATYSLRDDGGISVINRCRTGDGGKWSQIEGKAKIVDNA-TRAK 100 (174)
T ss_pred ccCCcccccchhhcceeeeeeecccchhhhcc-eeeEeEEEEecCCceEEEeccccCCCCCceeecceEEEecCc-cccE
Confidence 34677778999999999999999999999987 78999999999999999999998 44 799999999999987 3577
Q ss_pred eE----------------------------------EeecCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCCC
Q 032185 83 LK----------------------------------ILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQSD 121 (145)
Q Consensus 83 l~----------------------------------IlsR~p~l~~~~~~~~~~~~~~~G~d~~~l~~~~q~~ 121 (145)
|+ ||||+|++|++.+++++++++++|||.++|++++|.+
T Consensus 101 LkVsF~~pF~g~Y~Vl~~d~eYs~aiVgsPdr~ylWlLsRtP~~s~~~~~~ml~~ak~~Gfdv~~li~~~~~g 173 (174)
T COG3040 101 LKVSFFGPFYGDYWVLALDPEYSWAIVGSPDREYLWLLSRTPTLSQETLKRMLEIAKRRGFDVSKLIFVQQPG 173 (174)
T ss_pred EEEEecCCccccEEEEEECCCccEEEEeCCCcceEEEEecCCCCCHHHHHHHHHHHHHcCCCcceeEecCCCC
Confidence 65 9999999999999999999999999999999999874
No 4
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=99.96 E-value=6.1e-29 Score=185.20 Aligned_cols=116 Identities=40% Similarity=0.631 Sum_probs=105.1
Q ss_pred CCCCcccCCCCccccceeeEEEeEeCCcCCCCCCcceEEEEEECCCCcEEEEEeEEe--CCeeeEEeeeEEEcCCCCCcc
Q 032185 4 KKEMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS--DGKRGSIEGTAYKADPKSDEA 81 (145)
Q Consensus 4 ~p~v~~~~~Fdl~ry~G~WYeiar~p~~~e~~~~~c~~a~Y~~~~~g~i~V~n~~~~--~G~~~~~~G~a~~~~~~~~~~ 81 (145)
++.++++++||++||+|+|||||++|+.||++| .|++++|++.++|+|.|.|+|.. +|....+.|.|+++++. .++
T Consensus 25 ~~~~~~~~~fDl~ry~G~WYeIar~~~~fe~~~-~~~~a~Y~~~~~g~i~V~n~~~~~~~g~~~~~~g~a~~~~~~-~~~ 102 (177)
T PRK10477 25 PKGVTVVNNFDAKRYLGTWYEIARFDHRFERGL-EKVTATYSLRDDGGLNVINKGYNPDRGMWQESEGKAYFTGAP-TRA 102 (177)
T ss_pred CCCCcccCccCHHHhccHHHHhhcCCchhhcCc-eeEEEEEEECCCCcEEEEEeeEcCCCCCEEEEEEEEEecCCC-CCe
Confidence 457899999999999999999999999999976 79999999999999999999987 47888999999887765 345
Q ss_pred eeE----------------------------------EeecCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCCC
Q 032185 82 KLK----------------------------------ILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQSD 121 (145)
Q Consensus 82 kl~----------------------------------IlsR~p~l~~~~~~~~~~~~~~~G~d~~~l~~~~q~~ 121 (145)
+|+ ||||+|+++++++++++++++++|||.++|++++|.+
T Consensus 103 ~~~v~f~~~~~~~Y~v~~~d~dY~~aiv~~~~~~~~wIlsR~p~l~~~~~~~~~~~~~~~G~d~~~l~~~~q~~ 176 (177)
T PRK10477 103 ALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQQMLAVATREGFDVSKLIWVKQPG 176 (177)
T ss_pred EEEEEecCCcccceEEEEEcCCCCEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCHHHeEECCCCC
Confidence 553 9999999999999999999999999999999999965
No 5
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=99.38 E-value=8.1e-12 Score=93.12 Aligned_cols=116 Identities=23% Similarity=0.308 Sum_probs=72.5
Q ss_pred CCcccCCCCccccceeeEEEeEeCCcCCCCCCcceEEEEEECCCCcEEEE-EeEEe--CCeeeEEeeeEE-EcCCCCCcc
Q 032185 6 EMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVR-NETWS--DGKRGSIEGTAY-KADPKSDEA 81 (145)
Q Consensus 6 ~v~~~~~Fdl~ry~G~WYeiar~p~~~e~~~~~c~~a~Y~~~~~g~i~V~-n~~~~--~G~~~~~~G~a~-~~~~~~~~~ 81 (145)
....+++||++.|.|+||.++.+...|.. ..|+...|.. +.+.+-.. +-.+. +|.+......-+ +.|+. .||
T Consensus 27 ~~~~v~~Fd~~~f~G~Wyit~GlNp~fD~--FdCQ~h~F~~-~~~kl~~~~~wRi~~pdggf~~r~~~q~fvqD~~-~Pg 102 (198)
T PF07137_consen 27 PSVLVKSFDPKDFEGKWYITAGLNPTFDT--FDCQLHEFHT-EKDKLVGKINWRIPTPDGGFFTRSAVQRFVQDPS-QPG 102 (198)
T ss_dssp GGGS-S---GGGG-EEEEEEEESSTTTTT--TSEEEEEEEE-ETTEEEEEEEEEEE-TTS-EEEEEEEEEEEE-SS--TT
T ss_pred hhHhhccCCHhHcCceEEEecCCCCCccc--cccccceeec-CCCeEEEEEEEEeecCCCCceeccceeEeeeCCC-CCc
Confidence 34568999999999999999999888854 5899999998 45565432 12222 666544333222 33443 345
Q ss_pred eeE----------------------------------------------EeecCCCCCHHHHHHHHHHHHhcCCCCCCeE
Q 032185 82 KLK----------------------------------------------ILCREPHMDEAIYNQLVEKATSEGYDVSKLH 115 (145)
Q Consensus 82 kl~----------------------------------------------IlsR~p~l~~~~~~~~~~~~~~~G~d~~~l~ 115 (145)
.|. |++|+++|+++.+.++...+++.|++.++|.
T Consensus 103 ~lyn~dneyL~yqddWyIl~~~~~~~~~~~vfVyYrG~ndawdgYgGAvVYtrs~~lP~s~~p~l~~aa~k~G~d~~~F~ 182 (198)
T PF07137_consen 103 ILYNHDNEYLHYQDDWYILGSKIEDKPDDFVFVYYRGRNDAWDGYGGAVVYTRSPTLPESIVPELRRAAKKAGIDFSKFI 182 (198)
T ss_dssp EEEE---GGG-EEEEEEEEEEE-SSSTT-EEEEEEEEEEETTEEEEEEEEEESSSS--GGGHHHHHHHHHHTT--GGGSE
T ss_pred eEEecCCeeEEeeeeEEEEeecccCCCCCEEEEEEccccccccccCceEEEeCCCCCChHHhHHHHHHHHHhCCCHHHeE
Confidence 543 9999999999999999999999999999999
Q ss_pred EcCCCCCCCC
Q 032185 116 RTPQSDNPPE 125 (145)
Q Consensus 116 ~~~q~~c~~~ 125 (145)
.++.+.|+..
T Consensus 183 ~tDNtC~~~p 192 (198)
T PF07137_consen 183 RTDNTCGPEP 192 (198)
T ss_dssp E--STT----
T ss_pred EecCCCCCCc
Confidence 9999766544
No 6
>PF00061 Lipocalin: Lipocalin / cytosolic fatty-acid binding protein family fatty acid-binding protein signature lipocalin signature; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 1I05_A 1MUP_A 2LB6_A 1I04_A 1I06_A 1DC9_A 1URE_A 1AEL_A 1T8V_A 1ICM_A ....
Probab=99.21 E-value=2e-11 Score=86.10 Aligned_cols=102 Identities=24% Similarity=0.272 Sum_probs=71.8
Q ss_pred ceeeEEEeEeC-----CcCCCCCCcceEEEEEECCCCcEEEEEeEEeCCeeeEEeeeEE---------------------
Q 032185 19 MGRWYEIASFP-----SRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRGSIEGTAY--------------------- 72 (145)
Q Consensus 19 ~G~WYeiar~p-----~~~e~~~~~c~~a~Y~~~~~g~i~V~n~~~~~G~~~~~~G~a~--------------------- 72 (145)
+|+||+|+... ..+... .+|....+.+.+++.+.+......+|.+......+.
T Consensus 1 ~G~Wy~v~~as~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 79 (144)
T PF00061_consen 1 AGKWYEVALASDCPEFEEEKKE-LKCFPVVIKPLANGNLPVTFTSKRGGQCVTITVTFKKTEEPGKFTVEFSEYPGGNDF 79 (144)
T ss_dssp SEEEEEEEEEESSGGHHHHHHH-TTEEEEEEEEHHTTEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEESTTEEEE
T ss_pred CceeEEEEEEeCCcchhhhccc-cccEEEEEEeecCCCeEEEEEEecCCEEEEEEEeEEecccCCccceeeeccccccce
Confidence 69999999985 223222 589999999878888888876655554433222211
Q ss_pred -EcCCCCC-----------ccee----EEeecCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCCC
Q 032185 73 -KADPKSD-----------EAKL----KILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQSD 121 (145)
Q Consensus 73 -~~~~~~~-----------~~kl----~IlsR~p~l~~~~~~~~~~~~~~~G~d~~~l~~~~q~~ 121 (145)
+++++++ +++- .||+|++++++++++++.++++++|++.+++++++|.+
T Consensus 80 ~v~~tdy~~yai~~~~~~~~g~~~~~~~l~~R~~~l~~~~~~~f~~~~~~~gi~~~~i~~~~~~~ 144 (144)
T PF00061_consen 80 WVLDTDYDNYAIVYSCKKDNGKHTIVAWLLSRTPELSPEALEKFKKFAKSLGIDEENIVRTFQRD 144 (144)
T ss_dssp EEEEEESSTEEEEEEEEEETTEEEEEEEEEESSSEEEHHHHHHHHHHHHHTTETGGCEEEEEEES
T ss_pred eeeccCCCCEEEEEEEccCCCceEEEEEEEcCCCcCCHHHHHHHHHHHHhCCCCHHeEEECCCCC
Confidence 1121111 0110 09999999999999999999999999999999988753
No 7
>PLN02372 violaxanthin de-epoxidase
Probab=98.86 E-value=3.2e-08 Score=81.38 Aligned_cols=115 Identities=23% Similarity=0.357 Sum_probs=82.8
Q ss_pred cccCCCCccccceeeEEEeEeCCcCCCCCCcceEEEEEECCCCcEEEEEeEEe----CCeeeEEeeeE-EEcCCCCCcce
Q 032185 8 EVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS----DGKRGSIEGTA-YKADPKSDEAK 82 (145)
Q Consensus 8 ~~~~~Fdl~ry~G~WYeiar~p~~~e~~~~~c~~a~Y~~~~~g~i~V~n~~~~----~G~~~~~~G~a-~~~~~~~~~~k 82 (145)
..+++||.+.|.|+||.++.+...|.. ..|..-.|...+++.+.. |-.++ +|.+......- .+.++. .|+.
T Consensus 196 ~lv~~F~~~~f~GsWyivaGlNP~yD~--FdCQ~h~F~~~~~~kl~~-nl~wRv~tpdGgF~~Rs~vq~fvqd~~-~P~i 271 (455)
T PLN02372 196 ALVQNFDTADFNGRWYITSGLNKTFDT--FDCQLHEFTAEDPDKLVG-NLNWRINTPDGGFFTRSAVQRFVQDPN-QPGI 271 (455)
T ss_pred HHhhccCccccCccEEEecCCCCCCCc--ccccceeeecCCCCceEE-eeEEEEecCCCceEeecceeeeeccCC-CCce
Confidence 458999999999999999998777754 479999999875666533 22222 66644321111 112222 2222
Q ss_pred eE----------------------------------------------EeecCCCCCHHHHHHHHHHHHhcCCCCCCeEE
Q 032185 83 LK----------------------------------------------ILCREPHMDEAIYNQLVEKATSEGYDVSKLHR 116 (145)
Q Consensus 83 l~----------------------------------------------IlsR~p~l~~~~~~~~~~~~~~~G~d~~~l~~ 116 (145)
|. |++|++.++++.+.+++..++..|++.++|..
T Consensus 272 l~n~~NeyLhyqddWyIl~~k~~~~~~d~~lvYYrG~ndAwdgYgGAVvyTrs~~lP~~~~p~L~~Aa~kvG~df~~F~~ 351 (455)
T PLN02372 272 LYNHDNEYLHYQDDWYILSSKIENKPDDYVFVYYRGRNDAWDGYGGAVVYTRSSTLPESIVPELEKAAKKVGRDFSDFVR 351 (455)
T ss_pred EEcCCcceeecccceEEeeccccCCCCCeEEEEecccccccccccceEEEecCCCCChhhhHHHHHHHHHcCCCHHHhee
Confidence 21 99999999999999999999999999999999
Q ss_pred cCCCCCCCCcC
Q 032185 117 TPQSDNPPEAE 127 (145)
Q Consensus 117 ~~q~~c~~~~~ 127 (145)
++. .|-|.+.
T Consensus 352 tDN-sCgpep~ 361 (455)
T PLN02372 352 TDN-TCGPEPP 361 (455)
T ss_pred eCC-CCCCCch
Confidence 998 5655543
No 8
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=98.10 E-value=8.2e-05 Score=54.74 Aligned_cols=118 Identities=13% Similarity=0.214 Sum_probs=59.4
Q ss_pred CCCcccCCCCccccc-eeeEEEeEeCCcCCCCCCcceEEEEEECCCCcEEEEEeEEe-----------------CCeeeE
Q 032185 5 KEMEVVRGLDIKRYM-GRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS-----------------DGKRGS 66 (145)
Q Consensus 5 p~v~~~~~Fdl~ry~-G~WYeiar~p~~~e~~~~~c~~a~Y~~~~~g~i~V~n~~~~-----------------~G~~~~ 66 (145)
.++.++.+||.++|- |.||+...+...-+...-.|..-. ...++|.|+=.-..+. .|-...
T Consensus 3 ~Ni~~kt~fdk~k~F~g~WYvThyld~~~q~t~~~ca~~~-~kt~~GkvKE~~~~ynp~~~~~~Y~is~~~l~s~g~Kyt 81 (178)
T PF02087_consen 3 RNIKPKTDFDKDKYFSGTWYVTHYLDTDPQVTDKYCACFA-PKTSNGKVKEALYHYNPKNKTYFYDISESKLESNGFKYT 81 (178)
T ss_dssp SS----TT--HHHHTSSEEEEEEEEESSCCSSSSEEEEEE-EEEETTEEEEEEEEEETTTTEEEEEEEEEEEEETTSEEE
T ss_pred cCccccCCCCHHHccCceEEEEEEecCCCCcchhhhhhhc-cccCCCceEEEEEEecCCCceEEEEeeeeeccCCcceee
Confidence 468899999999977 899999987554444333454432 3335666542222222 220001
Q ss_pred Eeee-------------------EEEcCCCCC-----------cceeE----EeecCCCCCHHHHHHHHHHHHhcCCCCC
Q 032185 67 IEGT-------------------AYKADPKSD-----------EAKLK----ILCREPHMDEAIYNQLVEKATSEGYDVS 112 (145)
Q Consensus 67 ~~G~-------------------a~~~~~~~~-----------~~kl~----IlsR~p~l~~~~~~~~~~~~~~~G~d~~ 112 (145)
+.++ .++++++.. ++.+- ||+|..... .-.++...+.+.|+-.+
T Consensus 82 Ak~~~VdK~g~~~~~~~~~~sYt~tv~dtDds~AvV~~C~~~~~~~l~~LYaVlnRn~~~~--~~~KVksal~~vglkL~ 159 (178)
T PF02087_consen 82 AKFKTVDKDGKKIEEADEKNSYTITVLDTDDSYAVVHVCLHEGNKDLGDLYAVLNRNKNAN--PNDKVKSALDKVGLKLD 159 (178)
T ss_dssp EEEEEE-TTS-EEE---TTEEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEEESSTT------HHHHHHHHHTT--GG
T ss_pred eeeeEecCCCCcccccccCceEEEEEEecCCCeeEEEEecccCcccceeeeeeeecCCCCC--cchhHHHHHhhcceeeh
Confidence 1100 011122100 01100 999998866 47889999999999999
Q ss_pred CeEEcCCCCCCCC
Q 032185 113 KLHRTPQSDNPPE 125 (145)
Q Consensus 113 ~l~~~~q~~c~~~ 125 (145)
+|+.+.|..|...
T Consensus 160 df~~~k~~~C~YD 172 (178)
T PF02087_consen 160 DFTSTKDNKCKYD 172 (178)
T ss_dssp GSEESTTST----
T ss_pred heeecccCCcccc
Confidence 9999999999764
No 9
>PF11032 ApoM: Apolipoprotein M (ApoM); InterPro: IPR022734 ApoM is a 25 kDa plasma protein associated with high-density lipoproteins (HDLs). ApoM is important in the formation of pre-ss-HDL and also in increasing cholesterol efflux from macrophage foam cells []. Lipoproteins consist of lipids solubilized by apolipoproteins. ApoM lacks an external amphipathic motif and is uniquely secreted to plasma without cleavage of its terminal signal peptide []. ; PDB: 2XKL_A 2WEX_A 2YG2_B 2WEW_A.
Probab=98.05 E-value=0.00013 Score=54.80 Aligned_cols=115 Identities=20% Similarity=0.287 Sum_probs=56.8
Q ss_pred CCCCCc--ccCCCCcccc----ceeeEEEeEeC-Cc--CCC-CCCcceEEEEEECCCC-cEEEEEeEEe-CCeeeEEeee
Q 032185 3 SKKEME--VVRGLDIKRY----MGRWYEIASFP-SR--NQP-KNGADTRATYTLNEDG-TVHVRNETWS-DGKRGSIEGT 70 (145)
Q Consensus 3 ~~p~v~--~~~~Fdl~ry----~G~WYeiar~p-~~--~e~-~~~~c~~a~Y~~~~~g-~i~V~n~~~~-~G~~~~~~G~ 70 (145)
.||... +...+|-++| +|+||-||... .. .+. .-.+...-+.+...+. .+.++-.... +|.+....-.
T Consensus 22 ~C~~~~~l~~~~~d~~q~p~~~LGkW~fiAgas~~~~~L~~f~~vDs~~f~~~~~s~~~~l~l~~~iR~~~g~C~~~~~~ 101 (186)
T PF11032_consen 22 QCPEPAPLVTSGLDNTQFPSPLLGKWYFIAGASPHPESLATFKPVDSAWFNLSAGSDEETLNLTATIRMKNGKCVPRSWT 101 (186)
T ss_dssp --S---EEEEECCTCCCCCHCCSCEEEEEEEEESSGGGCGGGTTEEEEEEEEEE-SSTTEEEEEEEEEETTS-EEEEEEE
T ss_pred CCCCccccccccCCcccCCcccceeEEEEEEeCCCchHHhhhcceeeEEEEEEeCCCCCeEEeeeeecccCCeEEEeeEE
Confidence 456543 4677887666 99999999653 21 111 1134445555555443 5665422222 3544322111
Q ss_pred EEE-------------------cCCCCC-----------cceeEEeecCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCC
Q 032185 71 AYK-------------------ADPKSD-----------EAKLKILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQS 120 (145)
Q Consensus 71 a~~-------------------~~~~~~-----------~~kl~IlsR~p~l~~~~~~~~~~~~~~~G~d~~~l~~~~q~ 120 (145)
..+ ...++. -.+|.||||+|.++++.++++++.++=+|+. |..+|+.
T Consensus 102 y~l~~~s~~l~~eg~~~~~~~l~~tsCpDCiil~e~~~~~~rllLysR~~~~~~~~lEeFk~q~~Cl~~~---~l~~p~~ 178 (186)
T PF11032_consen 102 YHLSEGSTTLRTEGRPDMRTELFSTSCPDCIILKETGDSYQRLLLYSRSPKLEEEELEEFKAQTECLGFK---FLLTPRQ 178 (186)
T ss_dssp EEE-TTSS-EEETTEEEEEEECCCCCSTTEEEEEEEETTEEEEEEEESSSS--HHHHHHHHHHHHHTT-----EEE----
T ss_pred EEEecCCceEEecCCCcceeeEEecCCCCEEEEEEcCCCceEEEEEeCCCCCCHHHHHHHHHhhhccCcE---EEECccc
Confidence 111 111110 1233499999999999999999999999997 5544443
No 10
>PF03973 Triabin: Triabin; InterPro: IPR005657 This family contains saliva proteins from haematophagous insects that counteract vertebrate host haemostasis events such as coagulation, vasoconstriction and platelet aggregation []. These include: Triabin, a serine-protease inhibitor. It forms a non-covalent complex with thrombin at a molecular ratio of 1:1, and inhibits thrombin-induced platelet aggregation. Pallidipin, an anticollagen induced platelet aggregation factor also found in Triatoma pallidipennis salivary homogenates. Procalin, the major allergen of Triatoma protracta saliva. All members of this family belong to MEROPS proteinase inhibitor family I59, clan IZ. ; GO: 0005488 binding, 0030682 evasion or tolerance of host defense response; PDB: 3EBK_B 1AVG_I.
Probab=94.86 E-value=0.017 Score=42.00 Aligned_cols=26 Identities=15% Similarity=0.502 Sum_probs=16.9
Q ss_pred CCCCCcccCCCCccccc-eeeEEEeEe
Q 032185 3 SKKEMEVVRGLDIKRYM-GRWYEIASF 28 (145)
Q Consensus 3 ~~p~v~~~~~Fdl~ry~-G~WYeiar~ 28 (145)
.|..+++|+|||.++|- |+||+-..-
T Consensus 11 ~c~~~~~m~nFd~~kFF~g~WyvTH~k 37 (148)
T PF03973_consen 11 KCQNYKAMSNFDPTKFFKGTWYVTHAK 37 (148)
T ss_dssp TGGC--S-TT--HHHHCSCEEEEECCS
T ss_pred cccCCCcccCCChHHccCccEEEEecc
Confidence 35678999999999998 999987643
No 11
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=84.64 E-value=4.2 Score=29.09 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=40.0
Q ss_pred EEEEC-CCCcEEEEEeEEeCCeeeEEeeeEEEcCCCCCcceeE-Eee--cCCCCCHHHHHHHHHHHHh
Q 032185 43 TYTLN-EDGTVHVRNETWSDGKRGSIEGTAYKADPKSDEAKLK-ILC--REPHMDEAIYNQLVEKATS 106 (145)
Q Consensus 43 ~Y~~~-~~g~i~V~n~~~~~G~~~~~~G~a~~~~~~~~~~kl~-Ils--R~p~l~~~~~~~~~~~~~~ 106 (145)
.|+++ +.|.+.|.-.. +|+.....|..++.+.+ .||-|. +|. .+..+.|+++.+|++...+
T Consensus 48 ~Ys~~~epG~Y~V~l~~--~g~~~~~vG~I~V~~dS-~pGTLN~fL~~~~e~dl~Pevlk~fe~m~~~ 112 (134)
T PF08400_consen 48 EYSFDVEPGVYRVTLKV--EGRPPVYVGDITVYEDS-KPGTLNDFLTAPDEDDLRPEVLKRFEEMVAQ 112 (134)
T ss_pred eEEEEecCCeEEEEEEE--CCCCceeEEEEEEecCC-CCCcHHHHhhccccccCCHHHHHHHHHHHHH
Confidence 44444 44555553221 66666666888887776 578887 442 3678999999999876653
No 12
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=82.40 E-value=0.88 Score=26.38 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=23.0
Q ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCCC
Q 032185 85 ILCREPHMDEAIYNQLVEKATSEGYDVS 112 (145)
Q Consensus 85 IlsR~p~l~~~~~~~~~~~~~~~G~d~~ 112 (145)
+|...+.++++..+++++.++++||-++
T Consensus 19 ~ln~~~~vs~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 19 VLNGPPRVSEETRERILEAAEELGYRPN 46 (46)
T ss_dssp HHTTCSSSTHHHHHHHHHHHHHHTB-SS
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHCCCCC
Confidence 3455678999999999999999999753
No 13
>PF15060 PPDFL: Differentiation and proliferation regulator
Probab=81.52 E-value=0.91 Score=31.13 Aligned_cols=16 Identities=44% Similarity=1.151 Sum_probs=13.0
Q ss_pred CCCCCceeEEeeccCC
Q 032185 130 PQDTKGIWWIKSIFGK 145 (145)
Q Consensus 130 ~~~~~~~~~~~~~~~~ 145 (145)
|+-..|-||++..|||
T Consensus 47 pkad~g~WW~sfFF~k 62 (110)
T PF15060_consen 47 PKADPGHWWASFFFGK 62 (110)
T ss_pred cccCCCcceEEeEecc
Confidence 4455688999999997
No 14
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=64.13 E-value=12 Score=20.69 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcC
Q 032185 88 REPHMDEAIYNQLVEKATSEG 108 (145)
Q Consensus 88 R~p~l~~~~~~~~~~~~~~~G 108 (145)
..|.+|++..+..+++|+++|
T Consensus 15 ~NPnvSeeaK~~A~~~Le~~g 35 (36)
T PF10346_consen 15 HNPNVSEEAKQHAREKLEEMG 35 (36)
T ss_pred cCCCcCHHHHHHHHHHHHHcc
Confidence 478999999999999999876
No 15
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=59.45 E-value=29 Score=23.25 Aligned_cols=28 Identities=25% Similarity=0.522 Sum_probs=21.7
Q ss_pred CCCCCCCcccCCCCccccceeeEEEeEeCCc
Q 032185 1 MASKKEMEVVRGLDIKRYMGRWYEIASFPSR 31 (145)
Q Consensus 1 ~~~~p~v~~~~~Fdl~ry~G~WYeiar~p~~ 31 (145)
|.+|.. -+.|+++++.|.|=-+..-|..
T Consensus 1 ~~~c~~---~~~~~l~~~~G~W~Sv~~~P~v 28 (95)
T PF12992_consen 1 MQSCEE---SNSFDLDKICGEWESVNGKPDV 28 (95)
T ss_pred Cccccc---ccccchheeEEEeEccCCCCCE
Confidence 556654 4589999999999998877753
No 16
>PF08247 ENOD40: ENOD40 protein; InterPro: IPR013186 The soybean early nodulin 40 (ENOD40) mRNA contains two short overlapping ORFs; in vitro translation yields two peptides of 12 and 24 amino acids []. The putative role of the ENOD40 genes has been in favour of organogenesis, such as induction of the cortical cell divisions that lead to initiation of nodule primordia, in developing lateral roots and embryonic tissues. This supports the hypothesis for a role of ENOD40 in lateral organ development [].
Probab=57.87 E-value=6.3 Score=16.32 Aligned_cols=10 Identities=50% Similarity=1.002 Sum_probs=7.5
Q ss_pred eeEEeeccCC
Q 032185 136 IWWIKSIFGK 145 (145)
Q Consensus 136 ~~~~~~~~~~ 145 (145)
.-|.|||-|.
T Consensus 3 l~wqksihgs 12 (12)
T PF08247_consen 3 LCWQKSIHGS 12 (12)
T ss_pred eeEeeeecCC
Confidence 4589999873
No 17
>PF07215 DUF1419: Protein of unknown function (DUF1419); InterPro: IPR009862 This family consists of several bacterial proteins of around 110 residues in length. Members of this family seem to be specific to Agrobacterium species and to Rhizobium loti (Mesorhizobium loti). The function of this family is unknown.
Probab=54.40 E-value=5.9 Score=27.23 Aligned_cols=12 Identities=42% Similarity=1.088 Sum_probs=10.2
Q ss_pred cccceeeEEEeE
Q 032185 16 KRYMGRWYEIAS 27 (145)
Q Consensus 16 ~ry~G~WYeiar 27 (145)
..|.|.|+||+-
T Consensus 39 ~ly~GeWFEI~e 50 (111)
T PF07215_consen 39 ALYAGEWFEITE 50 (111)
T ss_pred cccccccEEecc
Confidence 459999999994
No 18
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=52.26 E-value=14 Score=29.36 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=26.1
Q ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCCCCe
Q 032185 85 ILCREPHMDEAIYNQLVEKATSEGYDVSKL 114 (145)
Q Consensus 85 IlsR~p~l~~~~~~~~~~~~~~~G~d~~~l 114 (145)
+|...+.++++..+++++.++++||-++..
T Consensus 21 vLn~~~~Vs~~tr~rV~~~a~elgY~pn~~ 50 (343)
T PRK10727 21 VINNSPKASEASRLAVHSAMESLSYHPNAN 50 (343)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCCCHH
Confidence 666778899999999999999999987653
No 19
>PRK09492 treR trehalose repressor; Provisional
Probab=51.32 E-value=15 Score=28.51 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=26.0
Q ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 032185 85 ILCREPHMDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 85 IlsR~p~l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+|.+.+.++++..+++++.++++||-++.
T Consensus 24 vLn~~~~vs~~tr~rV~~~a~elgY~pn~ 52 (315)
T PRK09492 24 VLNNESGVSEETRERVEAVINQHGFSPSK 52 (315)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 77888899999999999999999997753
No 20
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=50.68 E-value=17 Score=22.40 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=23.7
Q ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 032185 85 ILCREPHMDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 85 IlsR~p~l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+|.-.+.++++..+++.+.++++||.++.
T Consensus 20 ~ln~~~~v~~~t~~~i~~~~~~~gy~~~~ 48 (70)
T smart00354 20 VLNGNGRVSEETREKVLAAMEELGYIPNR 48 (70)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHhCCCCCH
Confidence 34445778999999999999999997653
No 21
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=49.51 E-value=14 Score=29.13 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=25.4
Q ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 032185 85 ILCREPHMDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 85 IlsR~p~l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+|...+.++++..+++++.++++||-++.
T Consensus 21 vLn~~~~vs~~tr~~V~~~a~elgY~pn~ 49 (341)
T PRK10703 21 VINKTRFVAEETRNAVWAAIKELHYSPSA 49 (341)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 56667889999999999999999998753
No 22
>PRK05417 glutathione-dependent formaldehyde-activating enzyme; Provisional
Probab=47.44 E-value=57 Score=24.67 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCC
Q 032185 91 HMDEAIYNQLVEKATSEGYDV 111 (145)
Q Consensus 91 ~l~~~~~~~~~~~~~~~G~d~ 111 (145)
-.+|+.+..++++++++|+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~ 166 (191)
T PRK05417 146 GTDPEQMDGIRARLKELGLEP 166 (191)
T ss_pred CCChHHhHHHHHHHHHcCCCc
Confidence 377899999999999999865
No 23
>PRK09526 lacI lac repressor; Reviewed
Probab=46.92 E-value=18 Score=28.43 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=25.9
Q ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 032185 85 ILCREPHMDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 85 IlsR~p~l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+|...+.++++..+++++.++++||-++.
T Consensus 25 vLn~~~~vs~~tr~rV~~~a~elgY~pn~ 53 (342)
T PRK09526 25 VLNQASHVSAKTREKVEAAMAELNYVPNR 53 (342)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 67778889999999999999999997764
No 24
>cd01392 HTH_LacI Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators. HTH-DNA binding domain of the LacI (lactose operon repressor) family of bacterial transcriptional regulators and their putative homologs found in plants. The LacI family has more than 500 members distributed among almost all bacterial species. The monomeric proteins of the LacI family contain common structural features that include a small DNA-binding domain with a helix-turn-helix motif in the N-terminus, a regulatory ligand-binding domain which exhibits the type I periplasmic binding protein fold in the C-terminus for oligomerization and for effector binding, and an approximately 18-amino acid linker connecting these two functional domains. In LacI-like transcriptional regulators, the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. When the C-terminal domain of the LacI family repre
Probab=46.12 E-value=19 Score=20.37 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=23.6
Q ss_pred eecCCCCCHHHHHHHHHHHHhcCCCCCCe
Q 032185 86 LCREPHMDEAIYNQLVEKATSEGYDVSKL 114 (145)
Q Consensus 86 lsR~p~l~~~~~~~~~~~~~~~G~d~~~l 114 (145)
+.-.+.+++....++.+.++++||.+..+
T Consensus 18 l~g~~~vs~~~~~~i~~~~~~l~~~~~~~ 46 (52)
T cd01392 18 LNGKPRVSEETRERVLAAAEELGYRPNAA 46 (52)
T ss_pred HcCCCCCCHHHHHHHHHHHHHhCCCCCHH
Confidence 44456789999999999999999976653
No 25
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=45.81 E-value=44 Score=22.59 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=14.0
Q ss_pred CccccceeeEEEeEeCC
Q 032185 14 DIKRYMGRWYEIASFPS 30 (145)
Q Consensus 14 dl~ry~G~WYeiar~p~ 30 (145)
||.+++|+|..++.-.+
T Consensus 3 dl~~LqG~W~~v~~e~~ 19 (107)
T TIGR03067 3 DLEKLQGTWKVVAAEKG 19 (107)
T ss_pred hHHhhCcEEEEEEEEeC
Confidence 68899999999996543
No 26
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=45.55 E-value=18 Score=28.73 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=25.5
Q ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 032185 85 ILCREPHMDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 85 IlsR~p~l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+|...+.++++..+++++.++++||-++.
T Consensus 21 vLn~~~~Vs~~tr~kV~~~a~elgY~pn~ 49 (346)
T PRK10401 21 VLNNSALVSADTREAVMKAVSELGYRPNA 49 (346)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCH
Confidence 56777889999999999999999997754
No 27
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=45.12 E-value=24 Score=27.75 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=25.9
Q ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 032185 85 ILCREPHMDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 85 IlsR~p~l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+|...+.++++..+++++.++++||-++.
T Consensus 26 ~Ln~~~~vs~~tr~~V~~~a~elgY~p~~ 54 (342)
T PRK10014 26 VLSGKGRISTATGERVNQAIEELGFVRNR 54 (342)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHhCCCcCH
Confidence 67788899999999999999999997753
No 28
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=44.29 E-value=24 Score=27.73 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=26.2
Q ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCCCCe
Q 032185 85 ILCREPHMDEAIYNQLVEKATSEGYDVSKL 114 (145)
Q Consensus 85 IlsR~p~l~~~~~~~~~~~~~~~G~d~~~l 114 (145)
+|...+.++++..+++++.++++||-++..
T Consensus 25 vLn~~~~vs~~tr~rV~~~a~elgY~pn~~ 54 (331)
T PRK14987 25 FLRNPEQVSVALRGKIAAALDELGYIPNRA 54 (331)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHhCCCccHH
Confidence 677778899999999999999999977643
No 29
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=44.22 E-value=20 Score=28.09 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=25.1
Q ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 032185 85 ILCREPHMDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 85 IlsR~p~l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+|...+.++++..+++++.++++||-++.
T Consensus 21 vLn~~~~vs~~tr~rV~~~a~~lgY~pn~ 49 (329)
T TIGR01481 21 VVNGNPNVKPATRKKVLEVIKRLDYRPNA 49 (329)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCCCH
Confidence 56667789999999999999999997753
No 30
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=44.13 E-value=20 Score=28.00 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.4
Q ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCCCCe
Q 032185 85 ILCREPHMDEAIYNQLVEKATSEGYDVSKL 114 (145)
Q Consensus 85 IlsR~p~l~~~~~~~~~~~~~~~G~d~~~l 114 (145)
+|...+.++++..+++++.++++||-++..
T Consensus 18 vLn~~~~vs~~tr~rV~~~a~~lgY~pn~~ 47 (327)
T PRK10423 18 VINKDRFVSEAITAKVEAAIKELNYAPSAL 47 (327)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCccHH
Confidence 456667899999999999999999977643
No 31
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=42.99 E-value=21 Score=28.83 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=25.7
Q ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 032185 85 ILCREPHMDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 85 IlsR~p~l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+|...+.++++.++++++.++++||-++.
T Consensus 20 vln~~~~Vs~eTr~kV~~a~~elgY~pN~ 48 (333)
T COG1609 20 VLNGSPYVSEETREKVLAAIKELGYRPNA 48 (333)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHCCCCCH
Confidence 56778899999999999999999997654
No 32
>PF14794 DUF4479: Domain of unknown function (DUF4479); PDB: 3BU2_C.
Probab=40.58 E-value=30 Score=21.97 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCC
Q 032185 91 HMDEAIYNQLVEKATSEGYDV 111 (145)
Q Consensus 91 ~l~~~~~~~~~~~~~~~G~d~ 111 (145)
.|+++.++++.+.+++.||+.
T Consensus 47 ~Lt~eqv~~LN~~l~~~Gf~~ 67 (73)
T PF14794_consen 47 FLTEEQVAKLNQALQKAGFDE 67 (73)
T ss_dssp ---HHHHHHHHHHHHHTT---
T ss_pred EcCHHHHHHHHHHHHHcCCCc
Confidence 689999999999999999974
No 33
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=39.02 E-value=5.1 Score=21.64 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCe
Q 032185 91 HMDEAIYNQLVEKATSEGYDVSKL 114 (145)
Q Consensus 91 ~l~~~~~~~~~~~~~~~G~d~~~l 114 (145)
.++++.++++.+.+++.|.+.+.+
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ 28 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSEL 28 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHH
Confidence 367899999999999999876554
No 34
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=38.52 E-value=13 Score=21.16 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCeE
Q 032185 91 HMDEAIYNQLVEKATSEGYDVSKLH 115 (145)
Q Consensus 91 ~l~~~~~~~~~~~~~~~G~d~~~l~ 115 (145)
.++++.++++...+++.|++.++|+
T Consensus 8 ~l~~el~~~L~~ls~~t~i~~S~Ll 32 (44)
T PF12651_consen 8 SLDKELYEKLKELSEETGIPKSKLL 32 (44)
T ss_pred ecCHHHHHHHHHHHHHHCCCHHHHH
Confidence 5889999999999999999877654
No 35
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=37.84 E-value=28 Score=22.58 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCC
Q 032185 91 HMDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 91 ~l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
.+++++.+++.+.++++|++++.
T Consensus 8 Rvd~~lK~~a~~i~~~lGl~~s~ 30 (83)
T TIGR02384 8 RIDEELKKEAYAVFEELGLTPST 30 (83)
T ss_pred eeCHHHHHHHHHHHHHhCCCHHH
Confidence 36778888888888888888764
No 36
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=37.63 E-value=1.1e+02 Score=19.74 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=15.4
Q ss_pred cceeeEEEeEeCCcCCCCCCcceEEEEEECCCCc
Q 032185 18 YMGRWYEIASFPSRNQPKNGADTRATYTLNEDGT 51 (145)
Q Consensus 18 y~G~WYeiar~p~~~e~~~~~c~~a~Y~~~~~g~ 51 (145)
..|+|-|+.-.| =.+..++++++|.
T Consensus 2 iYG~WvE~~va~---------Ya~e~~~l~~~GV 26 (79)
T PF11012_consen 2 IYGTWVEQGVAP---------YAAEEFTLNESGV 26 (79)
T ss_pred cceEEEECCCCC---------ccccEEEECCCcE
Confidence 359999987443 2234566666663
No 37
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=37.48 E-value=29 Score=27.15 Aligned_cols=29 Identities=7% Similarity=0.305 Sum_probs=24.1
Q ss_pred EeecCC---CCCHHHHHHHHHHHHhcCCCCCC
Q 032185 85 ILCREP---HMDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 85 IlsR~p---~l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+|...+ .++++..+++++.++++||-++.
T Consensus 19 vLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn~ 50 (327)
T TIGR02417 19 VINGKAKEYRISQETVERVMAVVREQGYQPNI 50 (327)
T ss_pred HHcCCCCCCccCHHHHHHHHHHHHHhCCCCCH
Confidence 455555 59999999999999999997764
No 38
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=37.42 E-value=26 Score=22.74 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC
Q 032185 92 MDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 92 l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+++++.+.+.++++++|++++.
T Consensus 8 iD~~lK~~A~~vl~~lGls~S~ 29 (80)
T PRK11235 8 VDDELKARAYAVLEKLGVTPSE 29 (80)
T ss_pred eCHHHHHHHHHHHHHhCCCHHH
Confidence 6788888999999999998765
No 39
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=36.66 E-value=37 Score=26.60 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=24.4
Q ss_pred EeecCC--CCCHHHHHHHHHHHHhcCCCCCC
Q 032185 85 ILCREP--HMDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 85 IlsR~p--~l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+|...+ .++++..+++++.++++||-++.
T Consensus 21 vln~~~~~~vs~~tr~rV~~~a~~lgY~pn~ 51 (327)
T PRK10339 21 VLNDDPTLNVKEETKHRILEIAEKLEYKTSS 51 (327)
T ss_pred hhcCCCCCCcCHHHHHHHHHHHHHhCCCCch
Confidence 566665 39999999999999999997665
No 40
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=36.05 E-value=18 Score=23.23 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC
Q 032185 92 MDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 92 l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+++++.+++.++++++|++++.
T Consensus 8 id~~lK~~a~~il~~~Glt~s~ 29 (83)
T PF04221_consen 8 IDEELKEEAEAILEELGLTLSD 29 (83)
T ss_dssp E-HHHHHHHHHHHHHTT--HHH
T ss_pred cCHHHHHHHHHHHHHcCCCHHH
Confidence 5678888888888888887754
No 41
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=33.61 E-value=37 Score=26.51 Aligned_cols=29 Identities=3% Similarity=0.229 Sum_probs=23.8
Q ss_pred EeecCC---CCCHHHHHHHHHHHHhcCCCCCC
Q 032185 85 ILCREP---HMDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 85 IlsR~p---~l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+|...+ .++++..+++++.++++||-++.
T Consensus 20 vLn~~~~~~~Vs~~tr~rV~~~a~elgY~pn~ 51 (328)
T PRK11303 20 VINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (328)
T ss_pred HHcCCCCCCCcCHHHHHHHHHHHHHhCCCCCH
Confidence 445554 69999999999999999997754
No 42
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=33.11 E-value=31 Score=22.85 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCe
Q 032185 91 HMDEAIYNQLVEKATSEGYDVSKL 114 (145)
Q Consensus 91 ~l~~~~~~~~~~~~~~~G~d~~~l 114 (145)
-+++++++++.++++++|++++.-
T Consensus 10 RiD~~vK~eA~~Vl~~mGlt~S~a 33 (88)
T COG3077 10 RIDDEVKEEATAVLEEMGLTISDA 33 (88)
T ss_pred eecHHHHHHHHHHHHHhCCCHHHH
Confidence 367888999999999999988753
No 43
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=32.91 E-value=38 Score=26.38 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=25.3
Q ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 032185 85 ILCREPHMDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 85 IlsR~p~l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+|.+.+.++++..+++.+.++++||-++.
T Consensus 21 ~Ln~~~~vs~~tr~rV~~~a~~lgY~pn~ 49 (311)
T TIGR02405 21 VLNNEPKVSIETRERVEQVIQQSGFVPSK 49 (311)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 56777889999999999999999997754
No 44
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=32.33 E-value=1.4e+02 Score=19.20 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=16.4
Q ss_pred CCcceE--EEEEECCCCcEEEEEeEEe
Q 032185 36 NGADTR--ATYTLNEDGTVHVRNETWS 60 (145)
Q Consensus 36 ~~~c~~--a~Y~~~~~g~i~V~n~~~~ 60 (145)
|.+|.- ...++++||++.+......
T Consensus 7 CADC~GI~t~L~L~~D~ty~l~~~Yl~ 33 (87)
T PF04170_consen 7 CADCPGIKTTLTLNADGTYTLTETYLG 33 (87)
T ss_dssp ETTSSEEEEEEEE-TTSEEEEEEEEET
T ss_pred CCCCCCeEEEEEECCCCcEEEEEEECC
Confidence 667754 4556678999888766654
No 45
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=32.20 E-value=1.7e+02 Score=20.18 Aligned_cols=37 Identities=19% Similarity=0.429 Sum_probs=23.6
Q ss_pred cccCCCCccccceeeEEEeEeCCcCCCCCCcceEEEEEECCCCcEEEE
Q 032185 8 EVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVR 55 (145)
Q Consensus 8 ~~~~~Fdl~ry~G~WYeiar~p~~~e~~~~~c~~a~Y~~~~~g~i~V~ 55 (145)
.+.+.+|..+..|+|..-+ .-.-+...+.++|.+.|+
T Consensus 13 ~~~~k~d~~~L~GkW~~~~-----------~~~~~~leF~~dGKL~v~ 49 (111)
T TIGR03066 13 DKDEKIDAKKLVGKWETSK-----------TKDDVVIEFAKDGKLVVT 49 (111)
T ss_pred CccccccccceeEEEEEee-----------eCCceEEEEcCCCeEEEe
Confidence 3456788888999999811 113344555578877755
No 46
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.14 E-value=27 Score=26.52 Aligned_cols=28 Identities=14% Similarity=0.403 Sum_probs=23.3
Q ss_pred CCCccccceeeEEEeEeCCcCCCCCCcceEE
Q 032185 12 GLDIKRYMGRWYEIASFPSRNQPKNGADTRA 42 (145)
Q Consensus 12 ~Fdl~ry~G~WYeiar~p~~~e~~~~~c~~a 42 (145)
.+.+..|.|+|-.+.-+|..|.. .|.+.
T Consensus 25 ~i~l~d~~gkw~VLff~P~DFTf---VCpTE 52 (194)
T COG0450 25 EITLSDYYGKWVVLFFYPADFTF---VCPTE 52 (194)
T ss_pred EEechhhcCcEEEEEeccCCCCc---cCcch
Confidence 67888999999999999999976 46554
No 47
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=30.59 E-value=74 Score=20.87 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCeEE-cCCCCCCC
Q 032185 91 HMDEAIYNQLVEKATSEGYDVSKLHR-TPQSDNPP 124 (145)
Q Consensus 91 ~l~~~~~~~~~~~~~~~G~d~~~l~~-~~q~~c~~ 124 (145)
++++...+++++.+++.+-....|+. +...+|+=
T Consensus 5 ~lT~~A~~~i~~ll~~~~~~~~~LRi~v~~gGCsG 39 (92)
T TIGR01911 5 AMSDDAYEEFKDFLKENDIDNDVIRIHFAGMGCMG 39 (92)
T ss_pred EECHHHHHHHHHHHHhCCCCCceEEEEEeCCCccC
Confidence 47899999999999887764334664 67788854
No 48
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=30.46 E-value=63 Score=15.29 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 032185 92 MDEAIYNQLVEKATSEGYD 110 (145)
Q Consensus 92 l~~~~~~~~~~~~~~~G~d 110 (145)
.+.+.+....+++++.|++
T Consensus 13 ~~~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 13 YSEKKLKPKVEFLKELGFS 31 (31)
T ss_pred ccHHHhhHHHHHHHHcCCC
Confidence 3466777777888888874
No 49
>PF10681 Rot1: Chaperone for protein-folding within the ER, fungal; InterPro: IPR019623 This conserved fungal family is an essential molecular chaperone in the endoplasmic reticulum. Molecular chaperones transiently interact with unfolded proteins to inhibit their self-aggregation and to support their folding and/or assembly. Rot1 is a general chaperone with some substrate specificity, its substrates being the structurally unrelated Kre5 Kre6 Big1 Atg22, which are type I, type II, and polytopic membrane proteins. The dependencies of each for Rot1 do not share similarities. However, their folding does require BiP, and one of these proteins was simultaneously associated with both Rot1 and BiP. In addition, Rot1 may cooperate with BiP/Kar2 in the folding of Kre6 [].
Probab=29.81 E-value=1e+02 Score=23.74 Aligned_cols=31 Identities=26% Similarity=0.607 Sum_probs=21.5
Q ss_pred eEEEeEeC---CcCCCCCCcce-------EEEEEECCCCcEEEE
Q 032185 22 WYEIASFP---SRNQPKNGADT-------RATYTLNEDGTVHVR 55 (145)
Q Consensus 22 WYeiar~p---~~~e~~~~~c~-------~a~Y~~~~~g~i~V~ 55 (145)
+||.|.|- |.-.. .|. ...|++.++|+|.+.
T Consensus 43 ~~EeA~Yr~~~Np~~p---~C~~a~l~wQHGtY~l~~nGsl~L~ 83 (212)
T PF10681_consen 43 YFEEAQYRVTSNPTNP---SCPTAVLIWQHGTYELNSNGSLTLT 83 (212)
T ss_pred eeeEEEEEEccCCCCC---CCCceEEEEecceEEECCCCcEEEe
Confidence 68999764 44444 464 467999999987764
No 50
>PHA01748 hypothetical protein
Probab=29.70 E-value=26 Score=21.24 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCe
Q 032185 91 HMDEAIYNQLVEKATSEGYDVSKL 114 (145)
Q Consensus 91 ~l~~~~~~~~~~~~~~~G~d~~~l 114 (145)
.++++.++++-..+++.|++.+.+
T Consensus 8 rLp~el~~eld~~a~~~g~~RSE~ 31 (60)
T PHA01748 8 KIEEDLLELLDRYAIKHGLNRSEA 31 (60)
T ss_pred ECCHHHHHHHHHHHHHhCCCHHHH
Confidence 478899999999999999876554
No 51
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=29.13 E-value=56 Score=25.11 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCC
Q 032185 91 HMDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 91 ~l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
.++++..+++++.++++||-++.
T Consensus 3 ~Vs~~Tr~rV~~~a~elgY~pn~ 25 (309)
T PRK11041 3 KVSQATRQRVEQAVLEVGYSPQS 25 (309)
T ss_pred cCCHHHHHHHHHHHHHHCCCcCH
Confidence 48999999999999999998764
No 52
>PF08333 DUF1725: Protein of unknown function (DUF1725); InterPro: IPR013544 This domain is found at the C terminus of many eukaryotic and one bacterial sequence. Many of its members are annotated as being putative L1 retrotransposons or LINE-1 reverse transcriptase homologues. The region in question is found repeated in some family members.
Probab=27.59 E-value=12 Score=17.88 Aligned_cols=10 Identities=30% Similarity=1.225 Sum_probs=6.3
Q ss_pred ccceeeEEEe
Q 032185 17 RYMGRWYEIA 26 (145)
Q Consensus 17 ry~G~WYeia 26 (145)
+|.|+|-++.
T Consensus 2 ~F~~kWmeLE 11 (20)
T PF08333_consen 2 KFAGKWMELE 11 (20)
T ss_pred chHHHHHHHH
Confidence 5777776543
No 53
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=27.22 E-value=1.7e+02 Score=21.89 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=40.9
Q ss_pred cceeEEeecCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCCCCCC-CcCCCCCCCCceeE
Q 032185 80 EAKLKILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQSDNPP-EAEESPQDTKGIWW 138 (145)
Q Consensus 80 ~~kl~IlsR~p~l~~~~~~~~~~~~~~~G~d~~~l~~~~q~~c~~-~~~~~~~~~~~~~~ 138 (145)
.-||.=||==|.|+++.|.+=.+.+-++|..+. |.+++..++.. ++..++.--.|..|
T Consensus 64 ~kkfETfSYLPpLtdeqI~kQVeYli~~GW~pc-lEf~~~~~~~~r~~~~s~~yyD~rYW 122 (176)
T PLN02289 64 KKKFETLSYLPDLTDEELAKEVDYLLRNKWVPC-LEFELEHGFVYREHHRSPGYYDGRYW 122 (176)
T ss_pred ccceeeeecCCCCCHHHHHHHHHHHHhCCCeee-eeeccCCceeEecCCCCCCcccCcee
Confidence 467778888899999999999999999998765 66665544333 22344444445555
No 54
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=25.81 E-value=31 Score=22.48 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCe
Q 032185 93 DEAIYNQLVEKATSEGYDVSKL 114 (145)
Q Consensus 93 ~~~~~~~~~~~~~~~G~d~~~l 114 (145)
-.+.++++++.+.++||+++.|
T Consensus 22 ~~~~~~~i~~~~~~~Gis~~el 43 (93)
T PF00816_consen 22 REEAIAEIRELMAEYGISPEEL 43 (93)
T ss_dssp CHHHHHHHHHHHHHTT--HHHC
T ss_pred HHHHHHHHHHHHHHhCCCHHHh
Confidence 4678999999999999999888
No 55
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=24.20 E-value=1.1e+02 Score=19.04 Aligned_cols=47 Identities=26% Similarity=0.449 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCCCCeEEcCCC-CCCCCc----C-CCCCCCCceeEEeeccC
Q 032185 98 NQLVEKATSEGYDVSKLHRTPQS-DNPPEA----E-ESPQDTKGIWWIKSIFG 144 (145)
Q Consensus 98 ~~~~~~~~~~G~d~~~l~~~~q~-~c~~~~----~-~~~~~~~~~~~~~~~~~ 144 (145)
+.+.+-|+++|+..-.+...-.. .-.|.+ + +..-|+|.||=|+.++|
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~Ik~l~~ 54 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKIKTLCG 54 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeehHhhCC
Confidence 35778899999987765533333 222221 1 33335899999998876
No 56
>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]
Probab=23.83 E-value=1.3e+02 Score=21.35 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=34.8
Q ss_pred EeecCC--CCCHHHHHHHHHHHHhcCCCCCCeEEcCCCCCCCC-------------cCCCCCCCCcee
Q 032185 85 ILCREP--HMDEAIYNQLVEKATSEGYDVSKLHRTPQSDNPPE-------------AEESPQDTKGIW 137 (145)
Q Consensus 85 IlsR~p--~l~~~~~~~~~~~~~~~G~d~~~l~~~~q~~c~~~-------------~~~~~~~~~~~~ 137 (145)
+..|.+ +|++..++++++.+++.+=+..-=+=+.|.+|.-. -|+++||---||
T Consensus 23 ~~~~k~~ltLTp~Av~~ik~ll~~~~e~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv~I~ 90 (134)
T KOG1120|consen 23 LAPRKAALTLTPSAVNHIKQLLSDKPEDVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGVRIF 90 (134)
T ss_pred ccccccccccCHHHHHHHHHHHHhCCcCceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCcEEE
Confidence 444443 58899999999999986544333335678888542 135777766665
No 57
>PHA01623 hypothetical protein
Probab=23.76 E-value=34 Score=20.50 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCe
Q 032185 91 HMDEAIYNQLVEKATSEGYDVSKL 114 (145)
Q Consensus 91 ~l~~~~~~~~~~~~~~~G~d~~~l 114 (145)
.+++++.+++...+...|++.+.+
T Consensus 19 rldeel~~~Ld~y~~~~g~~rSe~ 42 (56)
T PHA01623 19 YMDKDLKTRLKVYCAKNNLQLTQA 42 (56)
T ss_pred EeCHHHHHHHHHHHHHcCCCHHHH
Confidence 478888999999999999876554
No 58
>PF08092 Toxin_22: Magi peptide toxin family ; InterPro: IPR012627 This family consists of Magi peptide toxins (Magi 1, 2 and 5) isolated from the venom of Hexathelidae spider. These insecticidal peptide toxins bind to sodium channels and induce flaccid paralysis when injected into lepidopteran larvae. However, these peptides are not toxic to mice when injected intracranially at 20 pmol/g.; GO: 0019871 sodium channel inhibitor activity, 0005576 extracellular region
Probab=22.67 E-value=45 Score=18.51 Aligned_cols=10 Identities=50% Similarity=1.448 Sum_probs=7.1
Q ss_pred CceeEEeecc
Q 032185 134 KGIWWIKSIF 143 (145)
Q Consensus 134 ~~~~~~~~~~ 143 (145)
.|-||.|+-+
T Consensus 24 tgywWyk~~y 33 (38)
T PF08092_consen 24 TGYWWYKSYY 33 (38)
T ss_pred EeeEEeccee
Confidence 3459999864
No 59
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=22.47 E-value=72 Score=20.40 Aligned_cols=31 Identities=13% Similarity=0.374 Sum_probs=25.3
Q ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCCCCeEEc
Q 032185 85 ILCREPHMDEAIYNQLVEKATSEGYDVSKLHRT 117 (145)
Q Consensus 85 IlsR~p~l~~~~~~~~~~~~~~~G~d~~~l~~~ 117 (145)
+++|+ +....++++-+.+.++|++.+++...
T Consensus 4 vlg~~--~~a~~ia~Vs~~lA~~~~NI~~I~~l 34 (84)
T cd04871 4 LLGRP--LTAEQLAAVTRVVADQGLNIDRIRRL 34 (84)
T ss_pred EEcCc--CCHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 45554 78999999999999999998777653
No 60
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=21.69 E-value=1.1e+02 Score=21.13 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCeEEc
Q 032185 92 MDEAIYNQLVEKATSEGYDVSKLHRT 117 (145)
Q Consensus 92 l~~~~~~~~~~~~~~~G~d~~~l~~~ 117 (145)
.....++.+++.|++.|++++++...
T Consensus 74 ~a~~Rv~~~k~~L~~~Gi~~eRv~~~ 99 (124)
T PF02662_consen 74 RAEKRVERLKKLLEELGIEPERVRLY 99 (124)
T ss_pred HHHHHHHHHHHHHHHcCCChhHeEEE
Confidence 34567788999999999999998764
No 61
>PF04947 Pox_VLTF3: Poxvirus Late Transcription Factor VLTF3 like ; InterPro: IPR007031 Members of this family are approximately 26 kDa, and are involved in trans-activation of late transcription [].; GO: 0046782 regulation of viral transcription
Probab=21.40 E-value=74 Score=23.56 Aligned_cols=29 Identities=14% Similarity=0.341 Sum_probs=23.8
Q ss_pred EeecCCC-CCHHHHHHHHHHHHhcCCCCCC
Q 032185 85 ILCREPH-MDEAIYNQLVEKATSEGYDVSK 113 (145)
Q Consensus 85 IlsR~p~-l~~~~~~~~~~~~~~~G~d~~~ 113 (145)
+.||..+ +++++++.+++.++..+++.+.
T Consensus 23 ~q~k~~~~i~~~V~~~l~~~l~k~~i~~~~ 52 (171)
T PF04947_consen 23 FQGKQNTTIPDEVYEELRKELKKYNIDISD 52 (171)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 6777755 9999999999999999887543
No 62
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=20.21 E-value=3.5e+02 Score=21.14 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=29.2
Q ss_pred EEEEEeEEe-CCeeeEEeeeEEEcCCCCCcceeEEeecCCCCCHHHHHHHHHHHHhcCCC
Q 032185 52 VHVRNETWS-DGKRGSIEGTAYKADPKSDEAKLKILCREPHMDEAIYNQLVEKATSEGYD 110 (145)
Q Consensus 52 i~V~n~~~~-~G~~~~~~G~a~~~~~~~~~~kl~IlsR~p~l~~~~~~~~~~~~~~~G~d 110 (145)
|+|.+..+. +|+...+.|.....+.. .+++ .++.+.+.+-...+++.|++
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~-------~~g~--a~~~~~~~~d~~l~k~~G~N 51 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYP-------GLGR--AMPDEAMERDLELMKEMGFN 51 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BT-------TTBT-----HHHHHHHHHHHHHTT-S
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcc-------cccc--cCCHHHHHHHHHHHHhcCcc
Confidence 355555555 99999999987665432 1222 35677777777788888885
No 63
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=20.13 E-value=1.6e+02 Score=17.64 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC
Q 032185 89 EPHMDEAIYNQLVEKATSEGYD 110 (145)
Q Consensus 89 ~p~l~~~~~~~~~~~~~~~G~d 110 (145)
.|+|++.....+.+.++++|+.
T Consensus 23 ~p~ls~~eR~~vH~lA~~~gL~ 44 (60)
T cd02641 23 PPTLSSHDRLLVHELAEELGLR 44 (60)
T ss_pred CCCCCHHHHHHHHHHHHHcCCc
Confidence 4679999999999999999984
Done!