BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032187
         (145 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CI6|A Chain A, Transcription Factor Atf4-CEBP BETA BZIP HETERODIMER
          Length = 63

 Score = 33.9 bits (76), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDS 70
          +K K+M  N+ +A R R KK+ + E L  E   LE  N  LK+  DS
Sbjct: 2  KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADS 48


>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
          Basis For Creb Faimly Selective Dimerization And Dna
          Binding
 pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
          Basis For Creb Faimly Selective Dimerization And Dna
          Binding
          Length = 55

 Score = 30.4 bits (67), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 28 RMISNRESARRSRMKKQKQMEDLVNEINHLESANAML 64
          R++ NRE+AR SR KK++ ++ L N +  LE+ N  L
Sbjct: 5  RLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTL 41


>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
 pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
 pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
 pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
          Length = 640

 Score = 28.9 bits (63), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 26/32 (81%), Gaps = 2/32 (6%)

Query: 22  DERKRKRMISNRE--SARRSRMKKQKQMEDLV 51
           +ER RKR +  +E  SA+RSR++++++++D++
Sbjct: 606 EERSRKRKLDEKENLSAKRSRIEQKEELDDVI 637


>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
          Length = 660

 Score = 28.9 bits (63), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 26/32 (81%), Gaps = 2/32 (6%)

Query: 22  DERKRKRMISNRE--SARRSRMKKQKQMEDLV 51
           +ER RKR +  +E  SA+RSR++++++++D++
Sbjct: 626 EERSRKRKLDEKENLSAKRSRIEQKEELDDVI 657


>pdb|3A5T|A Chain A, Crystal Structure Of Mafg-Dna Complex
 pdb|3A5T|B Chain B, Crystal Structure Of Mafg-Dna Complex
          Length = 107

 Score = 26.9 bits (58), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 24  RKRKRMISNRESARRSRMKK-------QKQMEDLVNEINHLESANAMLKQNIDSSVQRYV 76
           ++R+R + NR  A   R+K+       +KQ  +L  E+  L S NA  K  +D+   +Y 
Sbjct: 37  KQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASXKLELDALRSKY- 95

Query: 77  EMESANNILRVQA 89
             E+  N  R  A
Sbjct: 96  --EALQNFARTVA 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.126    0.348 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,562,775
Number of Sequences: 62578
Number of extensions: 115513
Number of successful extensions: 303
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 23
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)