Query 032187
Match_columns 145
No_of_seqs 156 out of 676
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 10:46:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.5 3.5E-13 7.7E-18 89.5 9.5 62 21-82 2-63 (65)
2 PF00170 bZIP_1: bZIP transcri 99.4 1.3E-12 2.9E-17 86.6 9.1 61 22-82 3-63 (64)
3 KOG4005 Transcription factor X 99.4 1.5E-11 3.3E-16 101.1 14.2 85 19-103 64-148 (292)
4 KOG4343 bZIP transcription fac 99.3 9.7E-12 2.1E-16 111.3 9.0 66 24-89 281-346 (655)
5 PF07716 bZIP_2: Basic region 99.2 1E-10 2.2E-15 75.4 8.6 51 21-72 2-52 (54)
6 KOG3584 cAMP response element 99.2 4.1E-11 8.8E-16 100.8 7.8 54 24-77 291-344 (348)
7 KOG0709 CREB/ATF family transc 98.8 1.1E-08 2.5E-13 90.4 6.3 65 25-96 252-316 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.0 5.3E-08 1.1E-12 69.0 -6.9 49 24-72 30-78 (92)
9 KOG0837 Transcriptional activa 97.8 6.1E-05 1.3E-09 62.9 7.4 43 28-70 210-252 (279)
10 KOG4196 bZIP transcription fac 97.8 0.00067 1.5E-08 51.5 11.5 82 24-123 53-134 (135)
11 KOG4571 Activating transcripti 97.7 0.00051 1.1E-08 58.2 10.3 49 21-69 223-272 (294)
12 KOG3119 Basic region leucine z 97.2 0.0028 6.1E-08 52.9 8.9 60 26-106 196-255 (269)
13 PF06005 DUF904: Protein of un 97.0 0.014 3.1E-07 39.9 9.4 54 47-100 6-66 (72)
14 COG3074 Uncharacterized protei 96.7 0.018 3.8E-07 39.7 8.2 54 47-100 20-73 (79)
15 PF02183 HALZ: Homeobox associ 96.7 0.0092 2E-07 37.4 6.0 42 56-97 2-43 (45)
16 PF06156 DUF972: Protein of un 96.5 0.024 5.3E-07 41.5 8.5 53 49-101 5-57 (107)
17 PRK15422 septal ring assembly 96.5 0.027 6E-07 39.3 8.3 52 49-100 22-73 (79)
18 TIGR02449 conserved hypothetic 96.4 0.075 1.6E-06 35.8 9.4 55 47-101 2-56 (65)
19 TIGR02449 conserved hypothetic 96.4 0.055 1.2E-06 36.5 8.7 56 45-100 7-62 (65)
20 PF06005 DUF904: Protein of un 96.2 0.16 3.5E-06 34.7 10.6 46 54-99 6-51 (72)
21 KOG3863 bZIP transcription fac 96.1 0.016 3.5E-07 53.5 6.9 43 27-69 493-535 (604)
22 PRK13169 DNA replication intia 96.1 0.054 1.2E-06 39.9 8.4 51 49-99 5-55 (110)
23 PF06156 DUF972: Protein of un 95.7 0.088 1.9E-06 38.5 7.9 50 45-94 8-57 (107)
24 COG4467 Regulator of replicati 95.7 0.088 1.9E-06 38.9 7.7 49 50-98 6-54 (114)
25 PF07989 Microtub_assoc: Micro 95.6 0.27 5.9E-06 33.8 9.6 61 47-107 2-70 (75)
26 PRK10884 SH3 domain-containing 95.5 0.23 4.9E-06 40.2 10.5 34 67-100 126-159 (206)
27 PF14197 Cep57_CLD_2: Centroso 95.5 0.24 5.1E-06 33.6 9.0 56 44-99 11-66 (69)
28 PF14662 CCDC155: Coiled-coil 95.5 0.17 3.7E-06 40.8 9.4 62 47-108 3-64 (193)
29 PRK13169 DNA replication intia 95.4 0.12 2.6E-06 38.1 7.9 49 45-93 8-56 (110)
30 TIGR02894 DNA_bind_RsfA transc 95.1 0.25 5.5E-06 38.7 9.2 63 46-108 88-153 (161)
31 PF07888 CALCOCO1: Calcium bin 94.4 1.7 3.7E-05 40.0 13.9 81 26-106 152-232 (546)
32 PRK13729 conjugal transfer pil 94.3 0.18 4E-06 45.5 7.4 49 44-92 75-123 (475)
33 PF06785 UPF0242: Uncharacteri 93.9 0.45 9.8E-06 41.6 8.8 63 39-101 121-183 (401)
34 KOG4005 Transcription factor X 93.7 1.5 3.2E-05 36.9 11.2 53 53-105 91-143 (292)
35 PF11559 ADIP: Afadin- and alp 93.7 2.2 4.9E-05 32.0 11.5 79 27-105 48-126 (151)
36 PF02183 HALZ: Homeobox associ 93.4 0.43 9.3E-06 29.8 5.9 41 63-103 2-42 (45)
37 PRK10884 SH3 domain-containing 93.2 3.1 6.7E-05 33.6 12.1 52 45-96 118-169 (206)
38 PF10224 DUF2205: Predicted co 93.2 0.76 1.6E-05 32.1 7.5 45 48-92 19-63 (80)
39 PRK11637 AmiB activator; Provi 92.9 4.1 9E-05 35.6 13.4 80 26-105 49-128 (428)
40 PF07106 TBPIP: Tat binding pr 92.8 1 2.2E-05 34.5 8.5 53 47-99 81-135 (169)
41 PF12325 TMF_TATA_bd: TATA ele 92.7 2.2 4.7E-05 31.8 9.8 15 83-97 71-85 (120)
42 KOG3119 Basic region leucine z 92.7 1.3 2.9E-05 36.9 9.6 44 31-74 208-251 (269)
43 PRK04406 hypothetical protein; 92.6 2 4.2E-05 29.5 8.8 51 49-99 8-58 (75)
44 PF07106 TBPIP: Tat binding pr 92.1 2.5 5.3E-05 32.4 9.8 64 45-108 72-137 (169)
45 PRK02119 hypothetical protein; 91.5 2.9 6.3E-05 28.4 8.6 48 45-99 9-56 (73)
46 TIGR00219 mreC rod shape-deter 91.5 0.61 1.3E-05 39.2 6.2 36 52-87 66-105 (283)
47 KOG1853 LIS1-interacting prote 91.4 1.8 4E-05 36.8 8.9 51 47-97 54-115 (333)
48 PF04102 SlyX: SlyX; InterPro 91.4 1.7 3.6E-05 29.1 7.2 49 45-100 4-52 (69)
49 smart00338 BRLZ basic region l 91.3 1.3 2.7E-05 28.9 6.4 37 67-103 27-63 (65)
50 PRK04325 hypothetical protein; 91.2 2.7 5.9E-05 28.6 8.2 47 46-99 10-56 (74)
51 COG4026 Uncharacterized protei 90.9 2.9 6.2E-05 35.0 9.5 53 44-96 141-193 (290)
52 COG4467 Regulator of replicati 90.9 1.1 2.4E-05 33.2 6.3 47 45-91 8-54 (114)
53 PF04899 MbeD_MobD: MbeD/MobD 90.7 3.8 8.3E-05 27.9 10.1 52 55-106 17-68 (70)
54 PRK00846 hypothetical protein; 90.7 3.3 7.1E-05 28.8 8.2 49 45-100 13-61 (77)
55 PF10805 DUF2730: Protein of u 90.7 4.9 0.00011 29.0 9.6 64 43-106 33-98 (106)
56 PRK15422 septal ring assembly 90.4 4.6 0.0001 28.2 9.7 56 46-101 5-60 (79)
57 PRK02793 phi X174 lysis protei 90.3 3.4 7.4E-05 28.0 8.0 48 45-99 8-55 (72)
58 PF09726 Macoilin: Transmembra 90.3 8.2 0.00018 36.6 13.1 37 50-86 543-579 (697)
59 PF09755 DUF2046: Uncharacteri 90.2 5.4 0.00012 34.4 10.9 50 48-97 23-72 (310)
60 PRK09039 hypothetical protein; 90.1 8.4 0.00018 33.2 12.1 48 52-99 137-184 (343)
61 TIGR03752 conj_TIGR03752 integ 90.1 3.4 7.4E-05 37.5 10.0 61 46-106 74-135 (472)
62 PRK11637 AmiB activator; Provi 89.9 11 0.00024 32.9 12.9 72 29-100 59-130 (428)
63 PF02403 Seryl_tRNA_N: Seryl-t 89.8 5.4 0.00012 28.1 9.5 77 29-105 7-92 (108)
64 PRK00295 hypothetical protein; 89.8 4.5 9.7E-05 27.1 8.3 48 45-99 5-52 (68)
65 PF00170 bZIP_1: bZIP transcri 89.5 2.7 5.9E-05 27.3 6.8 36 66-101 26-61 (64)
66 PF07334 IFP_35_N: Interferon- 89.5 1.6 3.4E-05 30.4 5.8 46 75-120 2-49 (76)
67 PF04102 SlyX: SlyX; InterPro 89.2 3.9 8.5E-05 27.3 7.6 51 50-107 2-52 (69)
68 PF09304 Cortex-I_coil: Cortex 89.1 7.4 0.00016 28.7 10.6 58 40-97 11-68 (107)
69 PF11559 ADIP: Afadin- and alp 89.1 7.9 0.00017 29.0 13.6 68 38-105 45-112 (151)
70 PF10224 DUF2205: Predicted co 88.9 6.1 0.00013 27.6 8.9 56 45-100 8-64 (80)
71 PF09728 Taxilin: Myosin-like 88.9 6.5 0.00014 33.5 10.4 63 45-107 244-306 (309)
72 PF12329 TMF_DNA_bd: TATA elem 88.8 5.7 0.00012 27.0 9.8 61 43-103 10-70 (74)
73 PRK02119 hypothetical protein; 88.3 5.4 0.00012 27.1 7.8 50 47-106 4-56 (73)
74 COG1579 Zn-ribbon protein, pos 88.2 14 0.0003 30.8 13.7 51 25-75 32-82 (239)
75 PF11932 DUF3450: Protein of u 88.1 13 0.00028 30.2 12.4 50 46-95 43-92 (251)
76 COG4942 Membrane-bound metallo 88.0 9 0.00019 34.4 11.0 83 24-106 38-124 (420)
77 PF11932 DUF3450: Protein of u 88.0 13 0.00028 30.2 12.4 52 49-100 53-104 (251)
78 PF08317 Spc7: Spc7 kinetochor 87.7 7.7 0.00017 33.0 10.1 56 45-100 209-264 (325)
79 KOG0977 Nuclear envelope prote 87.6 8.9 0.00019 35.5 11.0 36 37-72 34-76 (546)
80 PF01166 TSC22: TSC-22/dip/bun 87.5 0.89 1.9E-05 30.1 3.4 28 61-88 16-43 (59)
81 PF05531 NPV_P10: Nucleopolyhe 87.5 7.1 0.00015 27.0 8.0 64 46-121 12-75 (75)
82 PF15294 Leu_zip: Leucine zipp 87.4 3 6.5E-05 35.4 7.4 45 50-94 130-174 (278)
83 PF12808 Mto2_bdg: Micro-tubul 87.3 2.5 5.5E-05 27.3 5.4 50 42-94 1-50 (52)
84 PF12718 Tropomyosin_1: Tropom 87.1 11 0.00025 28.5 10.2 26 47-72 16-41 (143)
85 COG3883 Uncharacterized protei 87.1 12 0.00026 31.6 10.7 63 43-105 36-105 (265)
86 KOG0977 Nuclear envelope prote 87.0 5.5 0.00012 36.8 9.3 62 34-95 130-191 (546)
87 KOG4571 Activating transcripti 87.0 7.9 0.00017 33.1 9.7 43 64-106 246-288 (294)
88 PRK00888 ftsB cell division pr 86.6 3.9 8.4E-05 29.6 6.7 39 63-101 31-69 (105)
89 PRK13922 rod shape-determining 86.5 2.9 6.2E-05 34.3 6.8 10 77-86 97-106 (276)
90 PF07407 Seadorna_VP6: Seadorn 86.1 4.3 9.3E-05 35.7 7.8 33 52-86 32-64 (420)
91 PRK09039 hypothetical protein; 86.1 6.4 0.00014 33.9 8.9 7 93-99 171-177 (343)
92 KOG4643 Uncharacterized coiled 85.8 6 0.00013 39.2 9.3 73 30-102 503-590 (1195)
93 PF05377 FlaC_arch: Flagella a 85.7 7.8 0.00017 25.3 7.3 33 75-107 16-48 (55)
94 PRK00888 ftsB cell division pr 85.6 3.8 8.2E-05 29.6 6.2 34 68-101 29-62 (105)
95 PRK00736 hypothetical protein; 85.5 8.7 0.00019 25.7 7.8 48 45-99 5-52 (68)
96 COG3883 Uncharacterized protei 85.4 12 0.00026 31.6 9.9 45 46-90 53-97 (265)
97 PF14197 Cep57_CLD_2: Centroso 85.3 9.1 0.0002 25.8 9.1 41 50-90 3-43 (69)
98 PF08317 Spc7: Spc7 kinetochor 85.1 15 0.00034 31.1 10.7 49 45-93 216-264 (325)
99 PF12711 Kinesin-relat_1: Kine 85.1 8.9 0.00019 27.2 7.7 40 55-94 20-65 (86)
100 PF07412 Geminin: Geminin; In 85.0 2.4 5.2E-05 34.4 5.4 45 58-106 124-168 (200)
101 PRK02793 phi X174 lysis protei 85.0 8.9 0.00019 25.9 7.5 51 49-106 5-55 (72)
102 smart00340 HALZ homeobox assoc 85.0 2.5 5.4E-05 26.4 4.2 26 69-94 8-33 (44)
103 PF14662 CCDC155: Coiled-coil 84.9 9.9 0.00021 30.7 8.8 41 49-89 99-139 (193)
104 KOG1414 Transcriptional activa 84.7 0.23 4.9E-06 43.5 -0.7 47 19-65 280-326 (395)
105 PF10174 Cast: RIM-binding pro 84.4 9.7 0.00021 36.6 9.9 65 41-105 297-361 (775)
106 KOG1414 Transcriptional activa 84.3 0.041 8.9E-07 48.2 -5.5 67 19-106 149-219 (395)
107 PF10482 CtIP_N: Tumour-suppre 84.0 12 0.00026 28.0 8.3 60 38-97 7-66 (120)
108 PF04880 NUDE_C: NUDE protein, 84.0 2.2 4.9E-05 33.6 4.7 51 47-102 2-52 (166)
109 PF10473 CENP-F_leu_zip: Leuci 83.7 18 0.00038 27.7 13.6 76 28-103 35-110 (140)
110 PF08172 CASP_C: CASP C termin 83.3 9 0.0002 31.8 8.3 45 43-101 91-135 (248)
111 KOG4797 Transcriptional regula 83.2 3.1 6.7E-05 31.0 4.9 33 57-89 65-97 (123)
112 PF09304 Cortex-I_coil: Cortex 83.1 16 0.00035 26.9 9.7 51 28-78 20-70 (107)
113 PF09744 Jnk-SapK_ap_N: JNK_SA 82.9 6.6 0.00014 30.6 6.9 51 48-98 92-142 (158)
114 PF08647 BRE1: BRE1 E3 ubiquit 82.9 14 0.00031 26.0 11.7 73 27-99 6-78 (96)
115 PRK00295 hypothetical protein; 82.8 12 0.00025 25.1 8.0 51 50-107 3-53 (68)
116 PF04849 HAP1_N: HAP1 N-termin 82.7 24 0.00052 30.4 10.8 31 60-90 235-265 (306)
117 PF06632 XRCC4: DNA double-str 82.6 23 0.0005 30.8 10.8 43 46-88 138-180 (342)
118 KOG1962 B-cell receptor-associ 82.5 6.6 0.00014 32.2 7.0 50 50-99 149-198 (216)
119 PF04156 IncA: IncA protein; 82.0 21 0.00045 27.4 10.2 17 77-93 134-150 (191)
120 PF12718 Tropomyosin_1: Tropom 81.8 20 0.00044 27.1 10.0 25 46-70 36-60 (143)
121 PF12777 MT: Microtubule-bindi 81.5 15 0.00032 31.4 9.2 53 51-103 234-286 (344)
122 PRK04406 hypothetical protein; 81.5 14 0.00031 25.2 7.8 47 57-103 9-55 (75)
123 TIGR03752 conj_TIGR03752 integ 81.5 17 0.00036 33.1 9.8 52 50-101 85-137 (472)
124 TIGR02209 ftsL_broad cell divi 81.2 7.6 0.00017 26.0 6.0 36 59-94 24-59 (85)
125 COG4026 Uncharacterized protei 81.0 15 0.00033 30.8 8.7 52 46-97 136-187 (290)
126 PRK04325 hypothetical protein; 80.9 15 0.00032 25.0 7.9 51 46-106 3-56 (74)
127 KOG1103 Predicted coiled-coil 80.8 27 0.00059 31.3 10.6 60 43-102 130-189 (561)
128 KOG0288 WD40 repeat protein Ti 80.4 43 0.00093 30.3 11.8 62 9-70 6-73 (459)
129 KOG1962 B-cell receptor-associ 80.3 30 0.00065 28.4 10.1 29 60-88 180-208 (216)
130 PF04111 APG6: Autophagy prote 80.1 36 0.00079 29.0 12.7 63 41-103 60-122 (314)
131 COG4942 Membrane-bound metallo 80.1 45 0.00097 30.0 13.5 71 31-101 38-108 (420)
132 PF08172 CASP_C: CASP C termin 80.1 11 0.00024 31.3 7.7 49 62-110 89-137 (248)
133 PF04977 DivIC: Septum formati 79.9 14 0.0003 24.1 6.9 29 64-92 22-50 (80)
134 PF01166 TSC22: TSC-22/dip/bun 79.9 3.9 8.4E-05 27.1 4.0 26 47-72 16-41 (59)
135 PF05812 Herpes_BLRF2: Herpesv 79.9 3.9 8.5E-05 30.6 4.5 30 43-72 1-30 (118)
136 PHA02562 46 endonuclease subun 79.8 44 0.00094 29.7 12.8 42 45-86 358-399 (562)
137 PRK00736 hypothetical protein; 79.8 15 0.00033 24.5 7.9 47 50-106 3-52 (68)
138 KOG3650 Predicted coiled-coil 79.7 8.8 0.00019 28.3 6.1 36 52-87 63-98 (120)
139 PF05266 DUF724: Protein of un 79.4 30 0.00065 27.6 12.5 64 26-89 91-154 (190)
140 PF11365 DUF3166: Protein of u 79.3 12 0.00025 27.1 6.7 41 55-95 4-44 (96)
141 PRK10803 tol-pal system protei 79.2 10 0.00022 31.4 7.3 48 45-92 54-101 (263)
142 PF05377 FlaC_arch: Flagella a 78.8 11 0.00025 24.5 5.9 29 47-75 9-37 (55)
143 PF15035 Rootletin: Ciliary ro 78.8 30 0.00066 27.4 9.5 36 65-100 80-115 (182)
144 PF15058 Speriolin_N: Sperioli 78.6 16 0.00035 29.6 7.9 33 48-88 8-40 (200)
145 PF15070 GOLGA2L5: Putative go 78.6 29 0.00063 32.5 10.7 19 42-60 119-137 (617)
146 PF09789 DUF2353: Uncharacteri 78.5 7.7 0.00017 33.5 6.5 42 49-90 69-110 (319)
147 KOG2129 Uncharacterized conser 78.5 8 0.00017 35.1 6.7 55 48-102 46-100 (552)
148 PF09738 DUF2051: Double stran 78.4 21 0.00044 30.6 9.0 84 20-106 88-173 (302)
149 PF07558 Shugoshin_N: Shugoshi 78.3 2.9 6.3E-05 26.0 2.9 34 56-89 11-44 (46)
150 PF12325 TMF_TATA_bd: TATA ele 78.3 25 0.00055 26.1 12.0 19 79-97 95-113 (120)
151 PF05700 BCAS2: Breast carcino 77.9 16 0.00034 29.5 7.8 56 46-101 137-210 (221)
152 PHA03162 hypothetical protein; 77.9 1.7 3.8E-05 33.1 2.1 27 43-69 11-37 (135)
153 PRK10803 tol-pal system protei 77.9 15 0.00034 30.3 8.0 21 77-97 65-85 (263)
154 PF07798 DUF1640: Protein of u 77.8 22 0.00047 27.6 8.3 48 50-97 49-97 (177)
155 PF09726 Macoilin: Transmembra 77.7 35 0.00075 32.5 11.0 28 48-75 548-575 (697)
156 PF13747 DUF4164: Domain of un 77.4 22 0.00048 25.0 11.5 68 24-98 11-78 (89)
157 PF04340 DUF484: Protein of un 77.2 20 0.00043 28.6 8.2 57 46-106 41-100 (225)
158 PF07716 bZIP_2: Basic region 77.1 10 0.00023 23.8 5.3 29 66-94 25-53 (54)
159 PF03962 Mnd1: Mnd1 family; I 77.1 34 0.00075 27.0 10.2 17 74-90 111-127 (188)
160 PF05103 DivIVA: DivIVA protei 77.0 1.5 3.3E-05 31.7 1.6 45 45-89 25-69 (131)
161 KOG4196 bZIP transcription fac 77.0 7.5 0.00016 29.7 5.3 35 75-109 83-117 (135)
162 COG3074 Uncharacterized protei 76.7 22 0.00047 24.6 8.6 52 46-97 5-56 (79)
163 PF04849 HAP1_N: HAP1 N-termin 76.7 36 0.00079 29.3 10.0 64 42-105 231-294 (306)
164 PF05667 DUF812: Protein of un 76.2 37 0.00079 31.7 10.6 56 43-98 326-381 (594)
165 PF04977 DivIC: Septum formati 75.2 13 0.00029 24.2 5.7 29 43-71 22-50 (80)
166 PF11180 DUF2968: Protein of u 75.2 42 0.00092 27.1 13.0 76 26-101 107-182 (192)
167 PF13942 Lipoprotein_20: YfhG 75.2 38 0.00082 27.1 9.0 37 73-109 130-166 (179)
168 PF01486 K-box: K-box region; 75.1 15 0.00033 25.8 6.3 30 61-90 70-99 (100)
169 TIGR02894 DNA_bind_RsfA transc 75.0 39 0.00084 26.6 9.4 8 81-88 119-126 (161)
170 PF10481 CENP-F_N: Cenp-F N-te 74.1 57 0.0012 28.1 11.6 79 28-106 22-128 (307)
171 PF15035 Rootletin: Ciliary ro 73.8 32 0.00068 27.3 8.4 51 47-97 69-119 (182)
172 PF08826 DMPK_coil: DMPK coile 73.7 23 0.0005 23.4 7.9 42 58-99 17-58 (61)
173 PF04728 LPP: Lipoprotein leuc 73.7 22 0.00049 23.2 8.4 30 46-75 4-33 (56)
174 PF10205 KLRAQ: Predicted coil 73.4 33 0.00072 25.0 10.4 58 49-106 16-73 (102)
175 KOG0982 Centrosomal protein Nu 73.1 75 0.0016 29.0 12.9 52 46-97 298-349 (502)
176 KOG0161 Myosin class II heavy 73.1 1E+02 0.0022 33.0 13.6 29 73-101 1512-1540(1930)
177 PHA03155 hypothetical protein; 73.0 5.5 0.00012 29.7 3.6 25 46-70 9-33 (115)
178 PF14915 CCDC144C: CCDC144C pr 73.0 61 0.0013 28.0 11.6 68 33-100 181-248 (305)
179 PF04156 IncA: IncA protein; 72.8 40 0.00088 25.8 13.0 25 77-101 162-186 (191)
180 KOG0946 ER-Golgi vesicle-tethe 72.8 71 0.0015 31.4 11.7 48 43-90 669-716 (970)
181 PF03980 Nnf1: Nnf1 ; InterPr 72.7 9 0.00019 27.2 4.7 29 43-71 78-106 (109)
182 PF09486 HrpB7: Bacterial type 72.6 44 0.00094 26.1 9.7 61 45-105 79-139 (158)
183 PF12709 Kinetocho_Slk19: Cent 72.5 28 0.0006 24.7 7.0 19 78-96 54-72 (87)
184 PHA03386 P10 fibrous body prot 72.4 34 0.00073 24.7 8.5 58 63-126 16-74 (94)
185 TIGR03513 GldL_gliding gliding 72.1 52 0.0011 26.8 9.9 65 41-105 130-197 (202)
186 COG2900 SlyX Uncharacterized p 72.1 29 0.00063 23.9 8.1 21 45-65 8-28 (72)
187 PF15290 Syntaphilin: Golgi-lo 71.7 65 0.0014 27.7 10.4 24 49-72 79-102 (305)
188 PRK10963 hypothetical protein; 71.7 36 0.00077 27.4 8.4 54 50-107 42-98 (223)
189 PF04136 Sec34: Sec34-like fam 71.3 44 0.00096 25.6 10.8 55 47-101 23-77 (157)
190 KOG4343 bZIP transcription fac 71.2 25 0.00055 32.8 8.1 30 64-93 307-336 (655)
191 PF04111 APG6: Autophagy prote 71.1 65 0.0014 27.4 12.4 56 44-99 77-132 (314)
192 PF06698 DUF1192: Protein of u 71.0 20 0.00043 23.7 5.6 24 47-70 23-46 (59)
193 PF04999 FtsL: Cell division p 70.8 25 0.00053 24.3 6.5 38 57-94 33-70 (97)
194 PF00038 Filament: Intermediat 70.8 58 0.0013 26.8 11.8 45 53-97 210-254 (312)
195 PF04642 DUF601: Protein of un 70.4 5.7 0.00012 33.7 3.6 57 45-101 217-273 (311)
196 PF14988 DUF4515: Domain of un 70.2 56 0.0012 26.3 10.4 43 53-95 157-199 (206)
197 KOG4674 Uncharacterized conser 70.1 38 0.00083 35.7 9.8 71 30-101 1229-1299(1822)
198 KOG1318 Helix loop helix trans 70.1 83 0.0018 28.3 12.4 80 19-98 224-322 (411)
199 KOG0250 DNA repair protein RAD 70.0 1E+02 0.0022 31.0 12.3 55 38-92 372-427 (1074)
200 PF12711 Kinesin-relat_1: Kine 69.9 22 0.00048 25.2 6.0 42 53-96 45-86 (86)
201 TIGR02209 ftsL_broad cell divi 69.9 23 0.0005 23.6 6.0 30 43-72 29-58 (85)
202 KOG4360 Uncharacterized coiled 69.7 56 0.0012 30.4 9.9 45 45-89 219-263 (596)
203 PF05266 DUF724: Protein of un 69.6 55 0.0012 26.1 11.8 50 50-99 129-178 (190)
204 COG3879 Uncharacterized protei 69.5 37 0.0008 28.5 8.2 63 49-115 54-116 (247)
205 PF05700 BCAS2: Breast carcino 69.1 58 0.0013 26.1 9.6 34 53-86 176-209 (221)
206 PF13815 Dzip-like_N: Iguana/D 69.1 28 0.00061 25.3 6.7 28 71-98 85-112 (118)
207 PHA03395 p10 fibrous body prot 69.0 39 0.00084 24.0 9.4 38 84-123 39-76 (87)
208 KOG1103 Predicted coiled-coil 69.0 38 0.00083 30.3 8.5 68 33-100 226-293 (561)
209 PF05911 DUF869: Plant protein 68.9 49 0.0011 31.9 9.8 53 45-97 92-165 (769)
210 PRK00846 hypothetical protein; 68.6 36 0.00078 23.5 7.9 44 64-107 18-61 (77)
211 PF04728 LPP: Lipoprotein leuc 68.3 31 0.00066 22.6 8.7 47 52-98 3-49 (56)
212 PRK13729 conjugal transfer pil 67.9 39 0.00085 30.8 8.6 54 43-96 67-120 (475)
213 KOG0161 Myosin class II heavy 67.9 1.7E+02 0.0036 31.4 13.9 60 45-104 943-1002(1930)
214 PF12709 Kinetocho_Slk19: Cent 67.9 26 0.00057 24.9 6.0 13 77-89 60-72 (87)
215 KOG3650 Predicted coiled-coil 67.7 45 0.00097 24.6 7.3 35 45-79 70-104 (120)
216 KOG0250 DNA repair protein RAD 67.4 92 0.002 31.3 11.4 58 42-99 369-427 (1074)
217 smart00787 Spc7 Spc7 kinetocho 67.3 80 0.0017 27.0 10.1 34 70-103 208-241 (312)
218 PF08826 DMPK_coil: DMPK coile 66.8 34 0.00074 22.6 7.9 46 50-95 16-61 (61)
219 COG1792 MreC Cell shape-determ 66.6 25 0.00054 29.6 6.7 10 77-86 94-103 (284)
220 PRK14127 cell division protein 66.2 22 0.00048 26.1 5.6 28 74-101 38-65 (109)
221 KOG2391 Vacuolar sorting prote 66.0 90 0.002 27.6 10.1 51 43-93 223-273 (365)
222 PRK14872 rod shape-determining 66.0 15 0.00033 32.0 5.4 25 74-98 58-82 (337)
223 PF05837 CENP-H: Centromere pr 65.5 42 0.00091 24.1 6.9 51 47-98 19-69 (106)
224 KOG0804 Cytoplasmic Zn-finger 65.5 1.1E+02 0.0024 28.0 10.9 76 28-103 368-451 (493)
225 KOG2391 Vacuolar sorting prote 65.4 82 0.0018 27.8 9.7 31 61-91 248-278 (365)
226 PF09730 BicD: Microtubule-ass 65.3 71 0.0015 30.7 10.1 42 55-96 100-144 (717)
227 PF13851 GAS: Growth-arrest sp 65.0 70 0.0015 25.5 10.4 36 55-90 30-65 (201)
228 PF02388 FemAB: FemAB family; 65.0 65 0.0014 28.2 9.3 58 45-106 242-299 (406)
229 KOG2077 JNK/SAPK-associated pr 64.7 28 0.0006 33.0 7.1 43 48-90 325-367 (832)
230 KOG0288 WD40 repeat protein Ti 64.7 68 0.0015 29.1 9.3 59 47-105 29-102 (459)
231 PF14645 Chibby: Chibby family 64.4 27 0.00058 25.8 5.8 33 50-82 76-108 (116)
232 PRK04778 septation ring format 64.4 1.1E+02 0.0024 28.0 10.9 50 48-97 379-428 (569)
233 PF03961 DUF342: Protein of un 64.3 81 0.0018 27.8 9.8 31 75-105 377-407 (451)
234 COG2433 Uncharacterized conser 64.1 1.1E+02 0.0024 29.0 10.8 47 45-91 436-492 (652)
235 COG2433 Uncharacterized conser 63.4 98 0.0021 29.4 10.4 26 47-72 424-449 (652)
236 KOG0946 ER-Golgi vesicle-tethe 63.2 93 0.002 30.6 10.4 55 45-99 650-704 (970)
237 PF10211 Ax_dynein_light: Axon 62.5 75 0.0016 25.1 12.4 42 47-88 122-163 (189)
238 PRK14160 heat shock protein Gr 62.5 84 0.0018 25.6 9.8 45 45-89 54-98 (211)
239 KOG4360 Uncharacterized coiled 62.3 76 0.0016 29.6 9.3 58 42-99 195-252 (596)
240 PRK13922 rod shape-determining 62.2 86 0.0019 25.6 10.7 23 75-97 71-93 (276)
241 PRK04863 mukB cell division pr 62.1 2E+02 0.0044 29.9 14.0 19 25-43 322-340 (1486)
242 PF05529 Bap31: B-cell recepto 61.9 73 0.0016 24.7 9.2 36 59-94 154-189 (192)
243 PLN02678 seryl-tRNA synthetase 61.9 85 0.0018 28.3 9.6 56 46-101 34-99 (448)
244 PF09738 DUF2051: Double stran 61.8 1E+02 0.0022 26.4 14.7 34 55-88 101-134 (302)
245 PF13863 DUF4200: Domain of un 61.3 57 0.0012 23.3 9.4 24 75-98 83-106 (126)
246 PF15397 DUF4618: Domain of un 60.6 71 0.0015 26.9 8.3 51 53-103 180-230 (258)
247 KOG0996 Structural maintenance 60.3 1.3E+02 0.0029 30.6 11.1 73 34-106 531-606 (1293)
248 PF09766 FimP: Fms-interacting 60.0 99 0.0022 26.8 9.4 37 40-76 103-139 (355)
249 PF07058 Myosin_HC-like: Myosi 59.9 44 0.00095 29.2 7.0 20 55-74 3-22 (351)
250 PRK10636 putative ABC transpor 59.9 1.4E+02 0.0029 27.7 10.8 63 44-106 562-631 (638)
251 PF06216 RTBV_P46: Rice tungro 59.9 1E+02 0.0022 26.5 9.1 34 45-78 78-111 (389)
252 PF14817 HAUS5: HAUS augmin-li 59.8 81 0.0017 29.8 9.3 57 39-95 73-129 (632)
253 PF05667 DUF812: Protein of un 59.7 76 0.0016 29.7 9.1 47 44-90 334-380 (594)
254 PF10805 DUF2730: Protein of u 59.5 63 0.0014 23.2 9.6 49 44-99 48-98 (106)
255 PRK14127 cell division protein 58.8 45 0.00098 24.5 6.1 21 77-97 48-68 (109)
256 COG3167 PilO Tfp pilus assembl 58.7 1E+02 0.0022 25.3 8.7 48 48-99 45-92 (211)
257 PF09730 BicD: Microtubule-ass 58.5 81 0.0017 30.3 9.2 54 47-100 71-127 (717)
258 cd07429 Cby_like Chibby, a nuc 58.3 32 0.00069 25.3 5.2 21 76-96 82-102 (108)
259 PF03980 Nnf1: Nnf1 ; InterPr 58.3 29 0.00062 24.6 4.9 31 64-94 78-108 (109)
260 PF10506 MCC-bdg_PDZ: PDZ doma 58.2 55 0.0012 22.1 8.3 57 49-105 2-58 (67)
261 PF01486 K-box: K-box region; 57.8 35 0.00076 23.8 5.3 22 46-67 76-97 (100)
262 PF10883 DUF2681: Protein of u 57.6 47 0.001 23.5 5.8 49 53-107 31-79 (87)
263 KOG4807 F-actin binding protei 57.6 1.5E+02 0.0033 27.0 10.7 39 60-98 443-481 (593)
264 PF05278 PEARLI-4: Arabidopsis 57.3 1.2E+02 0.0026 25.7 12.3 47 44-90 206-252 (269)
265 PF14257 DUF4349: Domain of un 57.3 86 0.0019 25.4 8.2 61 45-105 132-194 (262)
266 PF06428 Sec2p: GDP/GTP exchan 57.2 16 0.00034 26.4 3.4 39 68-106 39-77 (100)
267 KOG1853 LIS1-interacting prote 57.2 1.3E+02 0.0027 25.9 10.2 34 52-85 91-124 (333)
268 PF10146 zf-C4H2: Zinc finger- 57.1 1.1E+02 0.0024 25.2 10.5 66 41-106 28-100 (230)
269 PF10174 Cast: RIM-binding pro 56.8 1.5E+02 0.0032 28.7 10.7 59 40-98 303-361 (775)
270 PF09727 CortBP2: Cortactin-bi 56.8 1E+02 0.0023 24.8 11.5 50 54-103 136-185 (192)
271 PF00038 Filament: Intermediat 56.7 1.1E+02 0.0024 25.1 13.1 28 45-72 223-250 (312)
272 KOG4603 TBP-1 interacting prot 56.7 1E+02 0.0023 24.8 8.8 23 79-101 122-144 (201)
273 TIGR00414 serS seryl-tRNA synt 56.6 1.4E+02 0.0031 26.3 10.7 23 78-100 74-96 (418)
274 PF04859 DUF641: Plant protein 56.3 51 0.0011 25.0 6.2 35 51-85 93-127 (131)
275 PF10212 TTKRSYEDQ: Predicted 56.3 1.4E+02 0.0031 27.6 10.1 48 46-93 421-468 (518)
276 KOG2991 Splicing regulator [RN 56.3 67 0.0015 27.6 7.4 70 46-115 237-313 (330)
277 PF06103 DUF948: Bacterial pro 56.0 62 0.0013 22.0 8.9 33 46-78 27-59 (90)
278 KOG4687 Uncharacterized coiled 56.0 1.3E+02 0.0029 26.1 9.3 66 45-111 9-74 (389)
279 COG3159 Uncharacterized protei 55.7 1.1E+02 0.0024 25.2 8.4 54 51-108 44-100 (218)
280 PF02403 Seryl_tRNA_N: Seryl-t 55.5 69 0.0015 22.4 8.5 58 49-106 40-100 (108)
281 KOG0243 Kinesin-like protein [ 55.5 1.4E+02 0.003 30.0 10.3 51 48-98 444-494 (1041)
282 PRK10722 hypothetical protein; 55.5 1E+02 0.0022 25.9 8.3 36 73-108 176-211 (247)
283 PF06810 Phage_GP20: Phage min 55.5 86 0.0019 24.0 7.5 13 71-83 56-68 (155)
284 KOG2077 JNK/SAPK-associated pr 55.3 65 0.0014 30.6 7.8 57 49-105 298-368 (832)
285 PF10828 DUF2570: Protein of u 55.3 75 0.0016 22.8 9.2 49 47-95 34-82 (110)
286 PF04375 HemX: HemX; InterPro 55.3 1.3E+02 0.0027 26.2 9.3 22 76-97 96-117 (372)
287 KOG0995 Centromere-associated 55.3 1.3E+02 0.0028 28.2 9.7 63 43-105 444-510 (581)
288 PRK11281 hypothetical protein; 55.2 2.4E+02 0.0052 28.5 12.3 83 23-105 159-252 (1113)
289 PRK10722 hypothetical protein; 55.1 1.2E+02 0.0025 25.5 8.6 56 54-109 146-205 (247)
290 KOG4674 Uncharacterized conser 54.8 3E+02 0.0064 29.5 13.1 75 32-106 648-722 (1822)
291 PF11544 Spc42p: Spindle pole 54.8 70 0.0015 22.2 9.2 48 48-95 8-55 (76)
292 KOG3647 Predicted coiled-coil 54.5 1.4E+02 0.0031 25.7 9.6 68 38-105 91-165 (338)
293 COG4985 ABC-type phosphate tra 54.3 68 0.0015 27.1 7.1 43 74-116 215-261 (289)
294 KOG4673 Transcription factor T 54.2 98 0.0021 30.1 8.8 51 51-101 703-753 (961)
295 PF09763 Sec3_C: Exocyst compl 54.1 83 0.0018 29.4 8.5 62 45-106 37-98 (701)
296 PF13805 Pil1: Eisosome compon 53.9 83 0.0018 26.7 7.7 63 28-95 131-194 (271)
297 PRK11546 zraP zinc resistance 53.9 1E+02 0.0022 23.8 7.7 51 47-97 63-113 (143)
298 COG0172 SerS Seryl-tRNA synthe 53.6 1.6E+02 0.0034 26.6 9.8 61 45-105 29-93 (429)
299 PF06103 DUF948: Bacterial pro 53.4 69 0.0015 21.7 10.2 26 47-72 35-60 (90)
300 PF10481 CENP-F_N: Cenp-F N-te 53.3 1.4E+02 0.0031 25.7 8.9 52 43-94 16-81 (307)
301 PF12795 MscS_porin: Mechanose 53.1 1.2E+02 0.0026 24.4 8.8 10 31-40 28-37 (240)
302 PF09006 Surfac_D-trimer: Lung 52.7 43 0.00092 21.1 4.4 27 83-109 2-28 (46)
303 cd00068 GGL G protein gamma su 52.7 59 0.0013 20.8 5.4 31 79-109 5-36 (57)
304 PF12999 PRKCSH-like: Glucosid 52.6 1.1E+02 0.0023 24.4 7.7 33 38-70 139-171 (176)
305 PRK02224 chromosome segregatio 52.4 2.1E+02 0.0046 27.1 12.4 23 48-70 373-395 (880)
306 PF07820 TraC: TraC-like prote 52.4 34 0.00074 24.6 4.4 52 47-98 4-61 (92)
307 PRK03992 proteasome-activating 51.9 66 0.0014 27.9 7.0 23 78-100 27-49 (389)
308 PF05335 DUF745: Protein of un 51.8 1.2E+02 0.0027 24.2 10.9 62 41-102 63-124 (188)
309 PF11382 DUF3186: Protein of u 51.8 47 0.001 28.1 6.0 27 46-72 33-59 (308)
310 KOG2264 Exostosin EXT1L [Signa 51.8 1.7E+02 0.0037 28.0 9.9 55 44-98 92-146 (907)
311 KOG0995 Centromere-associated 51.5 2E+02 0.0043 27.0 10.2 44 45-88 280-323 (581)
312 PRK14872 rod shape-determining 51.4 60 0.0013 28.3 6.6 30 55-84 60-92 (337)
313 PTZ00454 26S protease regulato 51.3 91 0.002 27.4 7.8 24 78-101 41-64 (398)
314 PF10211 Ax_dynein_light: Axon 51.2 1.2E+02 0.0026 23.9 11.3 59 42-100 124-183 (189)
315 TIGR00219 mreC rod shape-deter 51.1 77 0.0017 26.5 7.1 25 74-98 67-91 (283)
316 PRK10920 putative uroporphyrin 51.0 1.8E+02 0.0039 25.8 9.6 23 74-96 100-122 (390)
317 PF13851 GAS: Growth-arrest sp 50.9 1.3E+02 0.0027 24.0 14.4 73 25-97 73-160 (201)
318 PF04899 MbeD_MobD: MbeD/MobD 50.4 77 0.0017 21.5 8.3 48 52-99 21-68 (70)
319 PF07407 Seadorna_VP6: Seadorn 50.3 26 0.00056 31.0 4.2 30 47-76 34-63 (420)
320 PF09728 Taxilin: Myosin-like 50.3 1.6E+02 0.0035 25.1 10.6 49 42-90 47-95 (309)
321 PF10234 Cluap1: Clusterin-ass 50.3 1.5E+02 0.0033 25.1 8.7 47 59-105 169-222 (267)
322 KOG3433 Protein involved in me 50.2 1.4E+02 0.003 24.3 9.8 37 36-72 107-143 (203)
323 PF08961 DUF1875: Domain of un 49.9 5.4 0.00012 33.1 0.0 43 43-85 120-162 (243)
324 KOG0999 Microtubule-associated 49.7 1.8E+02 0.0039 27.7 9.7 60 47-106 10-69 (772)
325 PF04999 FtsL: Cell division p 49.6 38 0.00082 23.3 4.3 25 47-71 44-68 (97)
326 PF14782 BBS2_C: Ciliary BBSom 49.5 2E+02 0.0043 25.9 9.9 70 37-106 320-398 (431)
327 PF05557 MAD: Mitotic checkpoi 49.3 1.5E+02 0.0033 27.9 9.4 26 47-72 505-530 (722)
328 KOG0964 Structural maintenance 49.3 2.3E+02 0.005 28.7 10.7 67 29-95 402-468 (1200)
329 PF05600 DUF773: Protein of un 49.2 1.4E+02 0.003 27.3 8.9 63 43-105 430-492 (507)
330 PF13118 DUF3972: Protein of u 49.1 1.1E+02 0.0024 23.1 6.9 45 45-89 78-122 (126)
331 KOG4643 Uncharacterized coiled 49.1 3E+02 0.0066 27.9 12.6 65 24-88 373-437 (1195)
332 PF14077 WD40_alt: Alternative 49.1 21 0.00045 22.7 2.5 21 45-65 18-38 (48)
333 KOG0483 Transcription factor H 49.0 39 0.00084 27.3 4.8 44 62-105 108-151 (198)
334 cd07429 Cby_like Chibby, a nuc 48.7 51 0.0011 24.3 5.0 23 52-74 79-101 (108)
335 PF06419 COG6: Conserved oligo 48.7 2E+02 0.0044 26.7 10.0 62 44-105 44-105 (618)
336 PF14712 Snapin_Pallidin: Snap 48.3 84 0.0018 21.3 9.8 62 46-107 15-84 (92)
337 PF15188 CCDC-167: Coiled-coil 48.3 95 0.0021 21.9 6.8 56 45-100 5-63 (85)
338 PF05557 MAD: Mitotic checkpoi 48.1 63 0.0014 30.4 6.7 65 52-116 566-650 (722)
339 PF07926 TPR_MLP1_2: TPR/MLP1/ 48.0 1.1E+02 0.0024 22.5 10.3 67 26-92 65-131 (132)
340 KOG1691 emp24/gp25L/p24 family 47.8 80 0.0017 25.9 6.4 52 42-93 131-182 (210)
341 PF15397 DUF4618: Domain of un 47.8 1.7E+02 0.0037 24.6 10.9 45 28-72 64-108 (258)
342 PF13094 CENP-Q: CENP-Q, a CEN 47.8 1.2E+02 0.0026 22.8 9.5 14 70-83 45-58 (160)
343 PF04136 Sec34: Sec34-like fam 47.5 1.3E+02 0.0027 23.1 10.5 57 45-101 7-63 (157)
344 COG5185 HEC1 Protein involved 47.5 1.3E+02 0.0029 27.9 8.3 57 44-100 486-546 (622)
345 TIGR02977 phageshock_pspA phag 47.3 1.4E+02 0.0031 23.7 10.9 37 47-83 101-137 (219)
346 KOG4797 Transcriptional regula 47.2 53 0.0012 24.5 4.9 27 64-90 65-91 (123)
347 PRK10698 phage shock protein P 47.1 1.5E+02 0.0033 23.9 11.8 59 36-98 87-145 (222)
348 PF12777 MT: Microtubule-bindi 47.1 1.4E+02 0.003 25.5 8.2 74 26-99 223-310 (344)
349 PRK11147 ABC transporter ATPas 47.1 1.5E+02 0.0032 27.4 8.8 54 47-100 570-629 (635)
350 COG2919 Septum formation initi 47.1 78 0.0017 23.0 5.8 33 63-95 54-86 (117)
351 PF13870 DUF4201: Domain of un 46.9 1.3E+02 0.0028 23.0 10.4 35 71-105 82-116 (177)
352 PF07558 Shugoshin_N: Shugoshi 46.8 24 0.00052 21.9 2.6 42 26-68 3-44 (46)
353 PF10226 DUF2216: Uncharacteri 46.4 1.6E+02 0.0034 23.9 8.8 55 24-78 23-81 (195)
354 PHA03011 hypothetical protein; 46.2 1.2E+02 0.0026 22.4 8.1 50 46-95 65-114 (120)
355 PF07412 Geminin: Geminin; In 46.2 1.1E+02 0.0025 24.8 7.0 48 64-111 123-170 (200)
356 PF07047 OPA3: Optic atrophy 3 46.1 56 0.0012 24.3 5.0 20 45-64 112-131 (134)
357 PF10359 Fmp27_WPPW: RNA pol I 46.1 93 0.002 27.9 7.2 58 45-107 170-227 (475)
358 PF06160 EzrA: Septation ring 46.1 2.4E+02 0.0052 25.9 10.9 66 50-123 377-442 (560)
359 COG1382 GimC Prefoldin, chaper 45.8 1.1E+02 0.0025 22.8 6.5 21 83-103 87-107 (119)
360 COG1579 Zn-ribbon protein, pos 45.7 1.8E+02 0.0038 24.2 11.0 22 47-68 91-112 (239)
361 PF12329 TMF_DNA_bd: TATA elem 45.7 92 0.002 21.0 10.1 60 47-106 7-66 (74)
362 PRK05892 nucleoside diphosphat 45.6 1.4E+02 0.003 23.0 7.6 59 45-105 11-72 (158)
363 PF13815 Dzip-like_N: Iguana/D 45.6 1.1E+02 0.0025 22.0 7.8 33 53-85 81-113 (118)
364 PF06008 Laminin_I: Laminin Do 45.6 1.7E+02 0.0036 23.9 10.9 57 44-100 44-100 (264)
365 PF05529 Bap31: B-cell recepto 45.5 1.4E+02 0.003 23.1 8.1 21 80-100 154-174 (192)
366 PRK14143 heat shock protein Gr 45.5 1.7E+02 0.0038 24.1 9.0 17 49-65 85-101 (238)
367 COG2919 Septum formation initi 45.4 1.2E+02 0.0025 22.1 6.5 42 65-106 49-90 (117)
368 TIGR03185 DNA_S_dndD DNA sulfu 45.2 1.4E+02 0.003 27.7 8.4 20 46-65 210-229 (650)
369 KOG3335 Predicted coiled-coil 44.8 62 0.0013 25.9 5.2 30 24-59 91-120 (181)
370 PTZ00454 26S protease regulato 44.3 1.3E+02 0.0029 26.4 7.8 21 51-71 28-48 (398)
371 PF10146 zf-C4H2: Zinc finger- 44.2 1.8E+02 0.0039 23.9 11.1 38 51-88 66-103 (230)
372 PF09789 DUF2353: Uncharacteri 44.2 2.1E+02 0.0046 24.8 9.9 66 34-99 19-98 (319)
373 PRK10929 putative mechanosensi 43.9 2.8E+02 0.0061 28.1 10.6 54 54-107 260-313 (1109)
374 PF06694 Plant_NMP1: Plant nuc 43.8 1.6E+02 0.0034 25.7 7.9 60 43-103 166-231 (325)
375 KOG1318 Helix loop helix trans 43.8 98 0.0021 27.8 6.9 27 46-72 291-317 (411)
376 KOG0980 Actin-binding protein 43.8 3.4E+02 0.0075 27.0 11.8 26 33-58 454-479 (980)
377 PF11382 DUF3186: Protein of u 43.7 56 0.0012 27.7 5.2 36 71-106 37-72 (308)
378 PF00261 Tropomyosin: Tropomyo 43.4 1.7E+02 0.0038 23.5 9.3 6 49-54 96-101 (237)
379 TIGR00606 rad50 rad50. This fa 43.0 3.7E+02 0.0081 27.2 13.4 22 34-55 846-867 (1311)
380 PF05600 DUF773: Protein of un 42.5 2.7E+02 0.0059 25.5 10.8 56 41-96 442-498 (507)
381 KOG2991 Splicing regulator [RN 42.0 2.3E+02 0.0049 24.4 10.6 56 49-106 214-269 (330)
382 KOG4436 Predicted GTPase activ 41.8 23 0.00049 34.6 2.7 63 45-109 829-891 (948)
383 PF10779 XhlA: Haemolysin XhlA 41.8 1E+02 0.0022 20.3 7.9 35 71-105 18-52 (71)
384 PF09602 PhaP_Bmeg: Polyhydrox 41.8 1.7E+02 0.0038 23.1 10.2 54 50-103 46-101 (165)
385 PF06548 Kinesin-related: Kine 41.7 2.1E+02 0.0045 26.3 8.6 54 44-97 384-472 (488)
386 PF14915 CCDC144C: CCDC144C pr 41.6 2.3E+02 0.0051 24.5 10.4 53 38-90 21-80 (305)
387 PF14645 Chibby: Chibby family 41.6 1.4E+02 0.003 21.9 6.9 16 78-93 83-98 (116)
388 PRK02224 chromosome segregatio 41.5 3.2E+02 0.0068 25.9 13.4 17 44-60 508-524 (880)
389 PF10046 BLOC1_2: Biogenesis o 41.5 1.2E+02 0.0027 21.3 9.5 50 52-101 21-70 (99)
390 PF13942 Lipoprotein_20: YfhG 41.3 1.1E+02 0.0024 24.5 6.1 44 56-99 102-149 (179)
391 KOG4807 F-actin binding protei 41.2 2.7E+02 0.0059 25.5 9.2 53 41-93 389-455 (593)
392 TIGR00606 rad50 rad50. This fa 41.1 4E+02 0.0087 27.0 13.1 49 40-88 883-931 (1311)
393 PF05103 DivIVA: DivIVA protei 40.9 15 0.00033 26.3 1.2 29 71-99 30-58 (131)
394 PF03670 UPF0184: Uncharacteri 40.9 1.3E+02 0.0028 21.2 7.4 42 49-90 30-71 (83)
395 PRK03992 proteasome-activating 40.8 1.5E+02 0.0034 25.6 7.6 34 50-83 13-46 (389)
396 PF13935 Ead_Ea22: Ead/Ea22-li 40.7 1.5E+02 0.0033 22.1 9.0 22 82-103 92-113 (139)
397 KOG1265 Phospholipase C [Lipid 40.6 4E+02 0.0087 26.9 12.0 80 11-90 1015-1099(1189)
398 PF13874 Nup54: Nucleoporin co 40.6 1.3E+02 0.0029 22.4 6.3 22 85-106 77-98 (141)
399 KOG3091 Nuclear pore complex, 40.5 3E+02 0.0066 25.5 10.1 22 81-102 412-433 (508)
400 PF14282 FlxA: FlxA-like prote 40.5 1.3E+02 0.0029 21.4 7.7 21 46-66 20-40 (106)
401 PF15058 Speriolin_N: Sperioli 40.4 38 0.00083 27.5 3.5 27 68-94 7-33 (200)
402 cd07666 BAR_SNX7 The Bin/Amphi 40.3 2.1E+02 0.0046 23.7 9.9 57 42-101 160-217 (243)
403 KOG3564 GTPase-activating prot 40.3 3.2E+02 0.0068 25.6 10.3 65 41-105 45-109 (604)
404 PRK13923 putative spore coat p 40.2 1.1E+02 0.0024 24.2 6.0 40 67-106 112-151 (170)
405 KOG0483 Transcription factor H 40.2 66 0.0014 26.0 4.9 44 55-98 108-151 (198)
406 PRK09413 IS2 repressor TnpA; R 40.1 89 0.0019 22.5 5.2 26 79-104 77-102 (121)
407 COG1730 GIM5 Predicted prefold 39.9 1.7E+02 0.0037 22.4 7.5 39 49-87 98-136 (145)
408 PRK15396 murein lipoprotein; P 39.8 1.3E+02 0.0027 20.9 7.9 32 46-77 26-57 (78)
409 PRK14148 heat shock protein Gr 39.7 2E+02 0.0043 23.1 9.2 35 52-86 40-74 (195)
410 KOG0018 Structural maintenance 39.4 4.3E+02 0.0093 26.9 11.1 68 29-96 407-474 (1141)
411 COG5509 Uncharacterized small 39.2 98 0.0021 20.7 4.7 23 47-69 27-49 (65)
412 PF09403 FadA: Adhesion protei 39.2 1.6E+02 0.0036 22.0 10.0 56 49-107 24-79 (126)
413 PRK11239 hypothetical protein; 39.1 67 0.0014 26.4 4.7 18 50-67 188-205 (215)
414 PF00261 Tropomyosin: Tropomyo 39.1 2E+02 0.0044 23.1 14.5 61 43-103 167-227 (237)
415 COG5570 Uncharacterized small 38.8 70 0.0015 20.9 3.9 20 45-64 5-24 (57)
416 PF07889 DUF1664: Protein of u 38.8 1.7E+02 0.0036 22.0 9.7 50 58-107 60-109 (126)
417 PF11068 YlqD: YlqD protein; 38.5 1.7E+02 0.0037 22.0 9.4 29 43-71 18-46 (131)
418 PRK15178 Vi polysaccharide exp 38.3 2.3E+02 0.005 25.6 8.4 53 45-97 286-338 (434)
419 cd07596 BAR_SNX The Bin/Amphip 38.2 1.7E+02 0.0038 22.0 12.8 64 28-94 114-184 (218)
420 PHA02562 46 endonuclease subun 38.1 2.9E+02 0.0062 24.5 11.4 54 44-97 336-389 (562)
421 KOG3156 Uncharacterized membra 38.0 2.3E+02 0.005 23.4 8.3 39 59-97 101-140 (220)
422 PF08657 DASH_Spc34: DASH comp 37.8 2E+02 0.0044 24.0 7.6 41 63-103 177-217 (259)
423 KOG0709 CREB/ATF family transc 37.8 1.3E+02 0.0029 27.5 6.8 34 68-101 274-307 (472)
424 PRK11281 hypothetical protein; 37.8 2E+02 0.0044 29.0 8.7 53 54-106 280-332 (1113)
425 COG1729 Uncharacterized protei 37.8 98 0.0021 26.1 5.7 46 47-100 58-103 (262)
426 KOG0982 Centrosomal protein Nu 37.5 3.3E+02 0.0071 25.0 9.7 18 75-92 306-323 (502)
427 PF00435 Spectrin: Spectrin re 37.4 1.1E+02 0.0024 19.6 9.7 56 49-104 38-97 (105)
428 PF07200 Mod_r: Modifier of ru 37.0 1.7E+02 0.0037 21.5 9.2 49 29-78 40-88 (150)
429 KOG0612 Rho-associated, coiled 36.8 4.4E+02 0.0096 27.3 10.6 37 67-103 502-538 (1317)
430 PF07334 IFP_35_N: Interferon- 36.8 89 0.0019 21.6 4.4 18 117-134 56-73 (76)
431 PF15070 GOLGA2L5: Putative go 36.8 2.6E+02 0.0056 26.3 8.8 22 64-85 92-113 (617)
432 KOG4593 Mitotic checkpoint pro 36.8 3.2E+02 0.0069 26.4 9.3 48 42-89 472-526 (716)
433 KOG0804 Cytoplasmic Zn-finger 36.7 3.4E+02 0.0074 25.0 9.7 25 73-97 396-420 (493)
434 smart00224 GGL G protein gamma 36.3 1.1E+02 0.0023 20.0 4.6 31 78-108 4-35 (63)
435 KOG2483 Upstream transcription 36.2 1.1E+02 0.0024 25.3 5.7 33 61-93 107-139 (232)
436 PF10359 Fmp27_WPPW: RNA pol I 36.2 3.2E+02 0.007 24.5 9.2 27 77-103 204-230 (475)
437 PF10241 KxDL: Uncharacterized 36.0 1.5E+02 0.0032 20.5 11.1 61 45-105 22-82 (88)
438 PF10473 CENP-F_leu_zip: Leuci 35.9 2E+02 0.0043 22.0 11.8 9 46-54 25-33 (140)
439 PF10498 IFT57: Intra-flagella 35.7 3E+02 0.0065 24.1 10.9 53 53-105 267-319 (359)
440 KOG1029 Endocytic adaptor prot 35.6 3.3E+02 0.0071 27.1 9.3 75 34-108 475-549 (1118)
441 PRK14160 heat shock protein Gr 35.6 2.4E+02 0.0053 22.9 7.5 15 50-64 66-80 (211)
442 PF05384 DegS: Sensor protein 35.6 2.1E+02 0.0046 22.2 12.1 79 29-107 18-125 (159)
443 PF05622 HOOK: HOOK protein; 35.4 12 0.00027 35.0 0.0 36 41-76 321-356 (713)
444 KOG0957 PHD finger protein [Ge 35.2 2.6E+02 0.0056 26.3 8.3 54 51-104 444-497 (707)
445 PF15619 Lebercilin: Ciliary p 34.9 2.3E+02 0.0051 22.5 11.4 32 35-66 8-40 (194)
446 PRK13923 putative spore coat p 34.9 2.2E+02 0.0049 22.5 7.0 13 53-65 119-131 (170)
447 PF05911 DUF869: Plant protein 34.8 3.4E+02 0.0074 26.4 9.4 57 48-104 634-690 (769)
448 PF04859 DUF641: Plant protein 34.5 2E+02 0.0044 21.7 7.0 51 49-99 77-127 (131)
449 PF08738 Gon7: Gon7 family; I 34.4 1.4E+02 0.0031 21.7 5.4 31 43-73 52-83 (103)
450 PF07246 Phlebovirus_NSM: Phle 34.4 2.9E+02 0.0063 23.4 9.3 37 73-109 202-238 (264)
451 PF09311 Rab5-bind: Rabaptin-l 34.4 15 0.00033 28.7 0.3 38 53-90 30-67 (181)
452 PF08606 Prp19: Prp19/Pso4-lik 34.4 1.5E+02 0.0033 20.2 6.2 25 72-96 14-38 (70)
453 PRK09413 IS2 repressor TnpA; R 34.1 1.4E+02 0.003 21.5 5.4 17 76-92 88-104 (121)
454 PF12495 Vip3A_N: Vegetative i 34.1 1.7E+02 0.0037 22.5 6.0 51 56-106 95-145 (177)
455 PF05812 Herpes_BLRF2: Herpesv 33.8 70 0.0015 24.0 3.8 21 54-74 5-25 (118)
456 PF15233 SYCE1: Synaptonemal c 33.8 2.2E+02 0.0047 21.8 9.5 43 46-88 7-49 (134)
457 PF04880 NUDE_C: NUDE protein, 33.7 97 0.0021 24.4 4.8 11 57-67 29-39 (166)
458 KOG4370 Ral-GTPase effector RL 33.6 1.9E+02 0.0042 26.5 7.1 44 63-106 410-453 (514)
459 COG2960 Uncharacterized protei 33.6 1.4E+02 0.003 21.9 5.2 33 65-97 58-90 (103)
460 TIGR01461 greB transcription e 33.4 2.2E+02 0.0047 21.7 7.0 57 47-105 10-70 (156)
461 PF06320 GCN5L1: GCN5-like pro 33.4 2E+02 0.0043 21.2 9.0 62 45-106 33-94 (121)
462 PRK11530 hypothetical protein; 33.2 1.1E+02 0.0024 24.5 5.0 32 52-83 24-55 (183)
463 PF05483 SCP-1: Synaptonemal c 33.0 4.7E+02 0.01 25.5 10.6 53 53-105 588-640 (786)
464 TIGR01000 bacteriocin_acc bact 32.8 3.4E+02 0.0074 23.8 10.2 23 48-70 239-261 (457)
465 PLN02678 seryl-tRNA synthetase 32.7 3.7E+02 0.0081 24.2 9.5 26 73-98 78-103 (448)
466 TIGR01010 BexC_CtrB_KpsE polys 32.7 3.1E+02 0.0066 23.2 8.9 14 45-58 177-190 (362)
467 COG1382 GimC Prefoldin, chaper 32.5 1.8E+02 0.0039 21.8 5.8 29 42-70 67-95 (119)
468 PF09766 FimP: Fms-interacting 32.4 1.9E+02 0.004 25.1 6.8 49 63-111 105-153 (355)
469 PTZ00464 SNF-7-like protein; P 32.3 2.7E+02 0.0059 22.5 10.6 24 55-78 71-94 (211)
470 PLN02320 seryl-tRNA synthetase 32.3 4.1E+02 0.0088 24.5 12.7 70 31-100 74-150 (502)
471 PF04568 IATP: Mitochondrial A 32.2 2E+02 0.0042 20.8 7.5 48 26-73 50-97 (100)
472 cd07598 BAR_FAM92 The Bin/Amph 32.2 2.7E+02 0.0058 22.4 8.6 56 45-100 11-74 (211)
473 PF13874 Nup54: Nucleoporin co 32.0 2.1E+02 0.0047 21.2 9.2 9 91-99 111-119 (141)
474 COG3264 Small-conductance mech 32.0 2.2E+02 0.0047 28.0 7.6 20 84-103 104-123 (835)
475 KOG4593 Mitotic checkpoint pro 31.9 1.8E+02 0.0039 28.0 6.9 68 38-105 552-625 (716)
476 KOG0976 Rho/Rac1-interacting s 31.4 5.5E+02 0.012 25.8 10.2 10 60-69 121-130 (1265)
477 TIGR00383 corA magnesium Mg(2+ 31.4 2.9E+02 0.0064 22.6 8.9 80 44-132 215-295 (318)
478 PF07926 TPR_MLP1_2: TPR/MLP1/ 31.3 2.1E+02 0.0046 20.9 11.1 68 41-108 13-80 (132)
479 COG3879 Uncharacterized protei 31.3 3.2E+02 0.0069 23.0 8.0 57 34-93 45-102 (247)
480 PF10046 BLOC1_2: Biogenesis o 31.3 1.9E+02 0.0041 20.3 8.2 56 44-99 41-99 (99)
481 PF07851 TMPIT: TMPIT-like pro 31.2 3.6E+02 0.0077 23.5 8.6 56 49-104 1-56 (330)
482 KOG0971 Microtubule-associated 31.1 4.1E+02 0.0088 26.9 9.2 64 45-108 375-438 (1243)
483 COG1792 MreC Cell shape-determ 31.1 1.9E+02 0.0041 24.3 6.4 41 52-96 66-106 (284)
484 KOG2185 Predicted RNA-processi 31.0 4.2E+02 0.009 24.2 8.8 73 28-101 397-479 (486)
485 KOG2189 Vacuolar H+-ATPase V0 30.9 5.3E+02 0.011 25.4 10.6 76 37-112 48-138 (829)
486 COG4238 Murein lipoprotein [Ce 30.8 1.9E+02 0.0041 20.2 8.0 52 45-96 25-76 (78)
487 PF10883 DUF2681: Protein of u 30.8 1.9E+02 0.0042 20.4 5.8 35 46-80 24-58 (87)
488 TIGR03545 conserved hypothetic 30.7 2.9E+02 0.0062 25.6 8.0 75 30-104 176-250 (555)
489 KOG1029 Endocytic adaptor prot 30.7 5.6E+02 0.012 25.6 12.8 87 22-108 370-458 (1118)
490 PF04420 CHD5: CHD5-like prote 30.6 2.5E+02 0.0053 21.5 7.4 94 42-136 37-147 (161)
491 PF07047 OPA3: Optic atrophy 3 30.6 1.2E+02 0.0026 22.5 4.7 37 31-67 98-134 (134)
492 KOG3633 BAG family molecular c 30.5 3E+02 0.0065 22.4 10.5 87 1-96 14-106 (219)
493 COG4345 Uncharacterized protei 30.4 2.9E+02 0.0062 22.1 7.8 55 48-112 121-176 (181)
494 PRK13182 racA polar chromosome 30.3 2.7E+02 0.0059 21.8 10.0 71 50-120 83-158 (175)
495 PLN03188 kinesin-12 family pro 30.3 3.2E+02 0.0069 28.3 8.6 64 32-95 1141-1240(1320)
496 TIGR01843 type_I_hlyD type I s 30.2 3.3E+02 0.0072 22.8 10.1 61 44-104 129-189 (423)
497 KOG0963 Transcription factor/C 30.1 3.2E+02 0.0069 26.0 8.1 56 47-102 280-346 (629)
498 PF12737 Mating_C: C-terminal 30.0 59 0.0013 29.1 3.4 22 40-61 397-418 (419)
499 PF04420 CHD5: CHD5-like prote 29.9 2.5E+02 0.0055 21.4 6.7 58 49-106 37-99 (161)
500 KOG0933 Structural maintenance 29.9 6.2E+02 0.013 25.9 13.1 86 23-108 793-878 (1174)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.49 E-value=3.5e-13 Score=89.52 Aligned_cols=62 Identities=35% Similarity=0.553 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 21 VDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESAN 82 (145)
Q Consensus 21 ~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN 82 (145)
.|+|+.+|+++||+||++||.||+.|+++|+.+|..|+.+|..|..++..+...+..+..+|
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47799999999999999999999999999999999999999999998887665555554443
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.43 E-value=1.3e-12 Score=86.60 Aligned_cols=61 Identities=33% Similarity=0.561 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 22 DERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESAN 82 (145)
Q Consensus 22 deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN 82 (145)
+.++.+|+++||+||++||.||+.++++|+.+|..|..+|..|..++..|...+..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4568899999999999999999999999999999999999999999999888888888877
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.38 E-value=1.5e-11 Score=101.09 Aligned_cols=85 Identities=25% Similarity=0.316 Sum_probs=79.9
Q ss_pred CChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 19 ANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 19 ~~~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
.++|||-.||+++||.+|+-+|.|||+++.++|.+|.+|..||+.|..++..|+...+.|.++|..|+.+++.++..|-.
T Consensus 64 LS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 64 LSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHH
Q 032187 99 LNSVL 103 (145)
Q Consensus 99 l~~i~ 103 (145)
+++.-
T Consensus 144 ~~~~~ 148 (292)
T KOG4005|consen 144 LKQQQ 148 (292)
T ss_pred hHHHH
Confidence 77543
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.30 E-value=9.7e-12 Score=111.27 Aligned_cols=66 Identities=36% Similarity=0.441 Sum_probs=62.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA 89 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~ 89 (145)
|+..|||+|||||..||+|||+|+..||..+..|..||+.|+.++..|++++..++.||.+|+.--
T Consensus 281 krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvps 346 (655)
T KOG4343|consen 281 KRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPS 346 (655)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCC
Confidence 577799999999999999999999999999999999999999999999999999999999997543
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.22 E-value=1e-10 Score=75.41 Aligned_cols=51 Identities=39% Similarity=0.598 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 21 VDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 21 ~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
.|+++.||. +||+||++||.||+.++.+|+.+|..|+.+|..|..++..|.
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788888 999999999999999999999999999999999998888765
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.21 E-value=4.1e-11 Score=100.80 Aligned_cols=54 Identities=30% Similarity=0.472 Sum_probs=50.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVE 77 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~ 77 (145)
||.-|+++|||+||.||+|||+|+..||.+|+.|+.+|..|.+++..|++.|..
T Consensus 291 KRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 291 KREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred HHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 456689999999999999999999999999999999999999999999988864
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.77 E-value=1.1e-08 Score=90.35 Aligned_cols=65 Identities=26% Similarity=0.418 Sum_probs=56.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 25 KRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 25 r~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
|-||+|+|.+||+.||+|||.|++.||.+|.....||+.|..++.. ++.+|..|-+++..|...+
T Consensus 252 rvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~-------Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 252 RVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE-------LELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH-------HhhccHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999887764 6778888888877776544
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.01 E-value=5.3e-08 Score=68.99 Aligned_cols=49 Identities=31% Similarity=0.472 Sum_probs=40.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
|..||..+||.+|+.||.||..++.+|+.++..|..+...|..++..+.
T Consensus 30 K~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~ 78 (92)
T PF03131_consen 30 KQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELR 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999887776666655555443
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.85 E-value=6.1e-05 Score=62.92 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=37.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 28 RMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDS 70 (145)
Q Consensus 28 R~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~ 70 (145)
..+.||++|.+||.||.+|+..||.+|..|..+|..|...+..
T Consensus 210 krlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~ 252 (279)
T KOG0837|consen 210 KRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSK 252 (279)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence 3679999999999999999999999999999888887665553
No 10
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.79 E-value=0.00067 Score=51.46 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=58.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
|.+||-++||--|.-||-|.-..-.+||.+-..|.++... |..||+.++.++..+..++..|....
T Consensus 53 KQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~--------------L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 53 KQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEK--------------LKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4557899999999999999999988888877766555444 45678888888888888888765432
Q ss_pred HHHHhhcCCCcCCCCCCCcC
Q 032187 104 QIWAEISGINVEIPEIPDPL 123 (145)
Q Consensus 104 ~~~~~~~g~~~~~~~~~d~~ 123 (145)
-. .|..-+.|..|.++
T Consensus 119 ~~----~~~~~~~pS~p~~~ 134 (135)
T KOG4196|consen 119 VS----VGASPVSPSSPEFA 134 (135)
T ss_pred hh----ccCCCCCCcccccc
Confidence 11 23344556555544
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.67 E-value=0.00051 Score=58.17 Aligned_cols=49 Identities=35% Similarity=0.460 Sum_probs=37.7
Q ss_pred hHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 21 VDERKRKR-MISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNID 69 (145)
Q Consensus 21 ~deRr~rR-~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~ 69 (145)
.++++.+| .+.|..+|-|.|.||++..+.|+.++..|+..|.+|+.++.
T Consensus 223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~ 272 (294)
T KOG4571|consen 223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQAS 272 (294)
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554444 55777779999999999999999998887777777666555
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.18 E-value=0.0028 Score=52.88 Aligned_cols=60 Identities=27% Similarity=0.454 Sum_probs=42.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 26 RKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 26 ~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
..|..+|=++||+||.+.+...++...+|..|+.||..| |.++..|+..|..|.+++..
T Consensus 196 ~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~l---------------------r~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 196 KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEAL---------------------RTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHh
Confidence 345568889999999999998877777777666555555 44555666666666666644
Q ss_pred H
Q 032187 106 W 106 (145)
Q Consensus 106 ~ 106 (145)
.
T Consensus 255 ~ 255 (269)
T KOG3119|consen 255 L 255 (269)
T ss_pred h
Confidence 3
No 13
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.98 E-value=0.014 Score=39.90 Aligned_cols=54 Identities=28% Similarity=0.353 Sum_probs=35.8
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEI-------NHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 47 l~eLe~~v-------~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
++.||.+| ..|+.+|..|+.++..+.+....|..||..|+.+-.....||.+|-
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 5566666666666666666677777777777777777777777653
No 14
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.74 E-value=0.018 Score=39.71 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
+.=|.-+|..|...|..|..+...+......++.||..|+.+-....+||++|-
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788889999999999988889999999999999999999999999863
No 15
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.67 E-value=0.0092 Score=37.37 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 56 HLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 56 ~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
+|+.+-..|+.....|...+..|..||..|++++..|+..++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 577778888888888888888999999999999988888764
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.55 E-value=0.024 Score=41.47 Aligned_cols=53 Identities=23% Similarity=0.410 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
+|-.++..|+.....|..++..|+..+..+..||..|+-+...|+.+|..+..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567777777777788888888888888889999999999999988887755
No 17
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.54 E-value=0.027 Score=39.31 Aligned_cols=52 Identities=31% Similarity=0.369 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
=|.-+|..|+.+|..|..++..+......+..||..|+.+.....+||++|-
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777899999999999999999998864
No 18
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.38 E-value=0.075 Score=35.83 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
+..|+.+|..|=..-.+|+.++..|.+....+..|+..|......-+.|+..+-+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~ 56 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMIT 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566655555555555555555556666666777776666666666665533
No 19
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.38 E-value=0.055 Score=36.49 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
..++.|-.....|+.||..|+.++..+...-..+..-|..=+.+++.+-.||.+|.
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 46788888888888899999888888888888888888888888888888888764
No 20
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.23 E-value=0.16 Score=34.72 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 54 INHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 54 v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
...|+...+.+...|..|...+..+..+|..|..+..+|......|
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666555555555555444443
No 21
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.15 E-value=0.016 Score=53.46 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=38.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 27 KRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNID 69 (145)
Q Consensus 27 rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~ 69 (145)
||.=+||.||+++|+||-.-|..||..|..|+.+-.+|..+-.
T Consensus 493 RRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~ 535 (604)
T KOG3863|consen 493 RRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERD 535 (604)
T ss_pred ccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999998888776544
No 22
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.14 E-value=0.054 Score=39.94 Aligned_cols=51 Identities=22% Similarity=0.423 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
+|=.++..|+.....+..++..|+..+..+..||..|+.+...|+.+|..+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777777777777777777788888888888888888888888866
No 23
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.70 E-value=0.088 Score=38.52 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
..+..|+.++..|-.+...|+..+..+.+.-..|..||..||..+.++..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999999999998865
No 24
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=95.67 E-value=0.088 Score=38.95 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
+=.+|..|+.....+..+++.+++.+..+..||..|+-+...|++||-.
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3456777777778888888899999999999999999999999999976
No 25
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=95.61 E-value=0.27 Score=33.78 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYV--------EMESANNILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~--------~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
+.+.+..++.|+.||=.|+-+|-.+.+.+. .+..+|-.|+.++..|+..++.+...+..+.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999887776 4577999999999999999998887776553
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.53 E-value=0.23 Score=40.16 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 67 NIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 67 ~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
++....+.+..|..||..|+.++..+..++..|.
T Consensus 126 ~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 126 KVAQSDSVINGLKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555555555554443
No 27
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.53 E-value=0.24 Score=33.57 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
+.+++.++.+++..+.+|..|..+.......+...-.+|..|++++..|...|...
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888888887777777777778888888888887776543
No 28
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.48 E-value=0.17 Score=40.79 Aligned_cols=62 Identities=23% Similarity=0.243 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAE 108 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~ 108 (145)
..+|-..|..|+.-|..|..++..+...+..++..|+.|..++..|+..++++...++..+.
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~ 64 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKA 64 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999887777543
No 29
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.45 E-value=0.12 Score=38.10 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
..+..|+.++..+-.+...|+..+..+.+.-..|..||..||..+.++.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999999999999999999999999999873
No 30
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.13 E-value=0.25 Score=38.74 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=53.4
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032187 46 QMEDLVN---EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAE 108 (145)
Q Consensus 46 ~l~eLe~---~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~ 108 (145)
+|..|.. ....+..||..|..++..|..++..|+.||..|..+...+..-...|-.|++.+-.
T Consensus 88 fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 88 FLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 57788899999999999999999999999999999999999999999888877543
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.38 E-value=1.7 Score=40.03 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=65.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 26 RKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 26 ~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
+..+.+-..........-+.+++.|+..+...+.++..|..+...+......+..|+..|..+..+++.++..|.+-+..
T Consensus 152 ~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~ 231 (546)
T PF07888_consen 152 KEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKT 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666777777777788888888888888888888888888888888888889999999888888888888766554
Q ss_pred H
Q 032187 106 W 106 (145)
Q Consensus 106 ~ 106 (145)
+
T Consensus 232 l 232 (546)
T PF07888_consen 232 L 232 (546)
T ss_pred H
Confidence 3
No 32
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=94.29 E-value=0.18 Score=45.48 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMEL 92 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L 92 (145)
+....+||.+++.|+.|.+.+......+.+++..++.||..|+.++..+
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578999999999999999999999999999999999999999998433
No 33
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.90 E-value=0.45 Score=41.59 Aligned_cols=63 Identities=25% Similarity=0.277 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 39 SRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 39 SR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
-=+|-+.+.+.||.-+.+++.||+.|.-+++.+.+.+...+.|+..|..++.|-.+..+.|++
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ 183 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELND 183 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888889999999999999999999999999999999998887777665555555543
No 34
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=93.74 E-value=1.5 Score=36.89 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
+.+.++.+...|..++..|.-..+.|...|..|-++-.+|..+|.-++.-+..
T Consensus 91 Rm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 91 RMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444555555554444433
No 35
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.70 E-value=2.2 Score=31.98 Aligned_cols=79 Identities=18% Similarity=0.276 Sum_probs=53.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 27 KRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 27 rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
.|=...||..-....++..-++.|+..+..|+..+..+..++..+......+..++..+...+..+.+.++.+...+..
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777777777777777777777777777777666666666666666666655544443
No 36
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.43 E-value=0.43 Score=29.78 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 63 MLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 63 ~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
+|......|+..|..|.++|..|..+...|+..+..|...+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677888999999999999999999999999999887655
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.24 E-value=3.1 Score=33.61 Aligned_cols=52 Identities=8% Similarity=0.120 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
++..+|..++..+......|..++..|++++..+..||..|++++..+.+..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444555555555555556666666666666665544
No 38
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=93.21 E-value=0.76 Score=32.13 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMEL 92 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L 92 (145)
++|..++..|+.....|..++...+..+..|..||..|..-+..|
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555566666655555555555555554444433
No 39
>PRK11637 AmiB activator; Provisional
Probab=92.91 E-value=4.1 Score=35.60 Aligned_cols=80 Identities=13% Similarity=0.182 Sum_probs=51.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 26 RKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 26 ~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
.+...+............+..+.+++.++..+..+...+..++..+...+..+..+=..|..++..+..++......+..
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444556666677777777777777777777777777777777777777777777777665555444
No 40
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.85 E-value=1 Score=34.55 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQR--YVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~--~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
+.+|..++..|+.++..|..++..|... ...+..+-..|..++..|..+|..|
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554444444332 1233344444444444444444443
No 41
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.75 E-value=2.2 Score=31.83 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 032187 83 NILRVQAMELTDRLR 97 (145)
Q Consensus 83 ~~Lra~~~~L~~rl~ 97 (145)
..|+.++.+|..|+.
T Consensus 71 ~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 71 EELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 42
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=92.68 E-value=1.3 Score=36.91 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=24.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 31 SNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQR 74 (145)
Q Consensus 31 sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~ 74 (145)
+-|..++.-=..-+.++.+|+.+-..|+.++.+|..++..++..
T Consensus 208 kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 208 KSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444334445556666666666666666666666655433
No 43
>PRK04406 hypothetical protein; Provisional
Probab=92.62 E-value=2 Score=29.50 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
.++.++..|+......-..|..|+.-+..-..+-..|+.++..|.++|..+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444444445555566777777777766654
No 44
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.07 E-value=2.5 Score=32.42 Aligned_cols=64 Identities=25% Similarity=0.342 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMES--ANNILRVQAMELTDRLRSLNSVLQIWAE 108 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~--EN~~Lra~~~~L~~rl~~l~~i~~~~~~ 108 (145)
..+.+|..++..|+.+...|...+..+...+..+.+ -|..|...+.+|...+..|.+-+..+.+
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777888888888888887777777777766 5677888888888888877777766644
No 45
>PRK02119 hypothetical protein; Provisional
Probab=91.50 E-value=2.9 Score=28.43 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
+++.+||.+++..+.-...|...+. .-..+-..|+.++..|..+|..+
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~-------~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALI-------EQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666665555555544433 33444456666666666666554
No 46
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=91.50 E-value=0.61 Score=39.17 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYV----EMESANNILRV 87 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~----~l~~EN~~Lra 87 (145)
..+.+|..||.+|+.++..+...+. .+..||..||+
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888888888776643333 25566666555
No 47
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=91.40 E-value=1.8 Score=36.76 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQ-----------RYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~-----------~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
|++|+.+...|+.+|+.|..++..+++ ....|+.+|+.+++....|+.+++
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiR 115 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIR 115 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555444444442 223556677777777776665544
No 48
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.39 E-value=1.7 Score=29.09 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
.++.+||.+++.++.-...|...+..- ..+-..|..++..|..+|..+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Q-------q~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQ-------QRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence 567778888877777666666555543 3344445555555666655553
No 49
>smart00338 BRLZ basic region leucin zipper.
Probab=91.26 E-value=1.3 Score=28.90 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 67 NIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 67 ~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
.+..|...+..+..+|..|+.++..|...+..|.+.+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666677777888888888888887777776654
No 50
>PRK04325 hypothetical protein; Provisional
Probab=91.19 E-value=2.7 Score=28.63 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
++.+||.+++.++.-...|...+. .-..+-..|..++..|..||..+
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~-------~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVA-------RQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 366666666666665555544443 33334455666666666666554
No 51
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.93 E-value=2.9 Score=35.00 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
+..++++..+-..|..+|..|..++..++.++..++.||+.|......|-..+
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev 193 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEV 193 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 34466666666677777777777777777888888889998877665444333
No 52
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=90.87 E-value=1.1 Score=33.18 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAME 91 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~ 91 (145)
..++.|+.++..|-++...|++.+..+-+.-..|.-||..||..+.+
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45789999999999999999999999999999999999999999987
No 53
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=90.74 E-value=3.8 Score=27.87 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
......-......+..+...+.....+|+.|++++..|..++..|++-+..+
T Consensus 17 ~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 17 QSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444555666666777777778899999999999999999998876544
No 54
>PRK00846 hypothetical protein; Provisional
Probab=90.68 E-value=3.3 Score=28.76 Aligned_cols=49 Identities=8% Similarity=0.097 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
+++.+||.+++..+. .+..|+.-+.....+-..|+.++..|.++|+.+.
T Consensus 13 ~Ri~~LE~rlAfQe~-------tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQ-------ALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555444 4444444444455566666777777777766653
No 55
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=90.67 E-value=4.9 Score=28.99 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSS--VQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l--~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
|+..++.|...+.........+..++..+ ...++.+..+=..++-++..+..+++.++..+..+
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45566666555555555555555555555 56667777777777777778888888777766654
No 56
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.37 E-value=4.6 Score=28.23 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
-++.||.+|.+.-..+.-|.-++..++++-..+..|+..++..-.+|......|..
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46778888877766666677777776666666666666655555555555554443
No 57
>PRK02793 phi X174 lysis protein; Provisional
Probab=90.28 E-value=3.4 Score=27.99 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
+++.+||.+++..+.-...|...+. .-..+-..|..++..|..+|..+
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~-------~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVT-------AHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677776666665555544443 33344455666666666666554
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.26 E-value=8.2 Score=36.56 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILR 86 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr 86 (145)
+..+..+|+.|...|+.++....+.+..++.|...||
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555544444444444444443
No 59
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.19 E-value=5.4 Score=34.38 Aligned_cols=50 Identities=22% Similarity=0.421 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
++|...+..|+++|..|+.++...+.++..|..||..||.....+..+..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aE 72 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAE 72 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888888888888888888888887766655433
No 60
>PRK09039 hypothetical protein; Validated
Probab=90.11 E-value=8.4 Score=33.20 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
.+|..|+.+...|+.++..+...+..++......+.++..|..+|+.+
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666677777777777777777777776643
No 61
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.10 E-value=3.4 Score=37.50 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVE-MESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~-l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
.+..|..+-+.|..||++|+.+...+.+++.. +.++...|..+...|...++.+...+..+
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777766666666543 44677777777777776666665555443
No 62
>PRK11637 AmiB activator; Provisional
Probab=89.89 E-value=11 Score=32.92 Aligned_cols=72 Identities=10% Similarity=0.041 Sum_probs=52.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 29 MISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 29 ~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
..+.....+.....-...+..|+.++..+..+...+..++..+...+..+..+=..+..++..+.+.|..+-
T Consensus 59 ~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 59 KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556677888888888888888888888888888888888888888888877777776543
No 63
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=89.78 E-value=5.4 Score=28.13 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=41.6
Q ss_pred HHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 032187 29 MISNRESARRSRMKKQ------KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMES---ANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 29 ~~sNReSArrSR~RKq------~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~---EN~~Lra~~~~L~~rl~~l 99 (145)
+..|.+..+.+-.++. ..+-+|..+...+..+...|+.+-+.++..+..+.. +-..|.+++.+|...+..+
T Consensus 7 ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~l 86 (108)
T PF02403_consen 7 IRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKEL 86 (108)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHH
Confidence 3446666666655553 344445556666666666666666666555544443 3445555555555555555
Q ss_pred HHHHHH
Q 032187 100 NSVLQI 105 (145)
Q Consensus 100 ~~i~~~ 105 (145)
..-+..
T Consensus 87 e~~~~~ 92 (108)
T PF02403_consen 87 EEQLKE 92 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 64
>PRK00295 hypothetical protein; Provisional
Probab=89.75 E-value=4.5 Score=27.11 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
+++.+||.+++.++.-...|...+.. -..+-..|+.++..|..+|..+
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~-------Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVE-------QQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 35788888888877766666555443 3344466667777777777665
No 65
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=89.53 E-value=2.7 Score=27.25 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 66 QNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
..+..|...+..+..+|..|+.++..|...+..|..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666667777777777777777777766654
No 66
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=89.50 E-value=1.6 Score=30.37 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCcCCCCCC
Q 032187 75 YVEMESANNILRVQAMELTDRLRSLNSVLQIWAEIS--GINVEIPEIP 120 (145)
Q Consensus 75 ~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~~--g~~~~~~~~~ 120 (145)
++.+..||..|+.++..|.+.|+.+..-++.-.++. -+.|..+++|
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~diPe~kvkFts~E~p 49 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQIKEDIPEKKVKFTSPEVP 49 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCccccCcCCCCCCC
Confidence 356778899999999888888888776555544432 2345555555
No 67
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=89.25 E-value=3.9 Score=27.28 Aligned_cols=51 Identities=24% Similarity=0.240 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
++.++..|+.....+-..+.. |...=...-.++..|..+++.|..-+..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~-------Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEE-------LNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666665555544444332 222223334456677778887777666654
No 68
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.07 E-value=7.4 Score=28.69 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 40 RMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 40 R~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
+.=.+..+..|+..+......+..|..+-..|+.....|..+|..+-..+.+|.+++.
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444433
No 69
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.06 E-value=7.9 Score=29.00 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 38 RSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 38 rSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
.+|.|-..+.+.|..++..+..++..|...+..++..+..++.+...+......+...+..+...+..
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777777777777777777777777766666666665544433
No 70
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=88.93 E-value=6.1 Score=27.57 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=45.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVN-EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 45 ~~l~eLe~-~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
.-++.++. .-..|..+...|...+..|..++..+..||..|+.+-.-|...+..|-
T Consensus 8 ~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 8 EDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454553 467788888889999999999999999999999999999988888773
No 71
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.87 E-value=6.5 Score=33.52 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
..++.+..++..|+.||..+..........+..+..|+..+..++..+..++..|..+...++
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778889999999999999999999999999999999999999999999998888877664
No 72
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.76 E-value=5.7 Score=26.99 Aligned_cols=61 Identities=26% Similarity=0.318 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
|...+..|..+-..|......+...|..|+.....++.+...|+..+..+...+..|.+.+
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777777777777777777777777777777777777777777777777777666554
No 73
>PRK02119 hypothetical protein; Provisional
Probab=88.32 E-value=5.4 Score=27.11 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNIL---RVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L---ra~~~~L~~rl~~l~~i~~~~ 106 (145)
+..++.++..|+.........+..| |.++ ..++..|+.+|..|..=+..+
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~L----------N~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEEL----------NQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4557777777766655555444432 4444 334577788888776655444
No 74
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.24 E-value=14 Score=30.76 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=39.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 25 KRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRY 75 (145)
Q Consensus 25 r~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~ 75 (145)
-.+.+..-.+.++..=.-++..+++++.+|..++.+.+.++.++..+....
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777888899999999999999988888888766433
No 75
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.06 E-value=13 Score=30.24 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
.++++..+...|..+...|..++..++.....++..-..+..++.+|..+
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444433333333333333333333333333333333333
No 76
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.98 E-value=9 Score=34.36 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=53.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 032187 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL----RSL 99 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl----~~l 99 (145)
++++-+.++=+.-.++....++....|+.++..++.++..+..++..+......+...+..+...+..|..+- ..|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566666667777777777777777777777777666666666666666666665554433 345
Q ss_pred HHHHHHH
Q 032187 100 NSVLQIW 106 (145)
Q Consensus 100 ~~i~~~~ 106 (145)
..+|..+
T Consensus 118 a~~L~A~ 124 (420)
T COG4942 118 AEQLAAL 124 (420)
T ss_pred HHHHHHH
Confidence 5666555
No 77
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.96 E-value=13 Score=30.20 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
+|..++..|..+...|...+..+...+.....+-..|..++..+..-...|.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444555555555555555555554444333
No 78
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.68 E-value=7.7 Score=32.95 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
..|..|..++..+..+....+..+..++.+...+..+-..+.++..++...+..+.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544444444444444444444444444444444444333
No 79
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.57 E-value=8.9 Score=35.46 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 032187 37 RRSRMKKQKQMEDLVN-------EINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 37 rrSR~RKq~~l~eLe~-------~v~~L~~eN~~L~~~~~~l~ 72 (145)
|.+|.|-|+.|.+|-. +|..|+.+|..|...++.++
T Consensus 34 r~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr 76 (546)
T KOG0977|consen 34 RDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLR 76 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888877765 78899999999999999877
No 80
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=87.53 E-value=0.89 Score=30.11 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 61 NAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 61 N~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
...|+.+|..|..+...++.||..||..
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555666777776654
No 81
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=87.53 E-value=7.1 Score=27.01 Aligned_cols=64 Identities=17% Similarity=0.363 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCCCCC
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPD 121 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~~g~~~~~~~~~d 121 (145)
-+..+..||..|+.....+...+... ..|...+..+..+|..++.-+..+.+.=.... +|++||
T Consensus 12 dIk~vd~KVdaLq~~V~~l~~~~~~v-----------~~l~~klDa~~~~l~~l~~~V~~I~~iL~~~~-~p~~p~ 75 (75)
T PF05531_consen 12 DIKAVDDKVDALQTQVDDLESNLPDV-----------TELNKKLDAQSAQLTTLNTKVNEIQDILNPDI-VPDVPD 75 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCch-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-CCCCCC
Confidence 34555566666555554444433321 22344445555566666655555544412122 677664
No 82
>PF15294 Leu_zip: Leucine zipper
Probab=87.37 E-value=3 Score=35.39 Aligned_cols=45 Identities=29% Similarity=0.346 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
|..++..|+.||..|+.++..+..++.....|+..|..++.+|+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999988888887
No 83
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=87.31 E-value=2.5 Score=27.26 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 42 KKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
|+..+|.+|+.++..=+ +.=...-......+..++.||..|++++.-++.
T Consensus 1 kw~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677888887765432 122222345667788899999999999886654
No 84
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.09 E-value=11 Score=28.53 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
++.++.++..|+.++..+-.+|..|.
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~ 41 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQ 41 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 85
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.07 E-value=12 Score=31.61 Aligned_cols=63 Identities=13% Similarity=0.256 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM-------ELTDRLRSLNSVLQI 105 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~-------~L~~rl~~l~~i~~~ 105 (145)
+...+.+++..+..++.+...|..++..+..+...+..++..+.+++. ++..++...+.+|..
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666665555555554 444445444444443
No 86
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.96 E-value=5.5 Score=36.81 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 34 ESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 34 eSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
+.|-+.+..=...+.++...+..++.+...++..+..+......|..||..|+.++..++..
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33444444445566667777788888888888888888888888888888888888776653
No 87
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=86.96 E-value=7.9 Score=33.15 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 64 LKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 64 L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
=+.+-+.+...+..|+..|..||.++.+|...++.|..+|-.+
T Consensus 246 kRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 246 KRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667788999999999999999999999999887654
No 88
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=86.56 E-value=3.9 Score=29.58 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 63 MLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 63 ~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
.+..++..++++...+..+|..|+.++..|.+-...+.+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe 69 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEE 69 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 344444444444445556666666666666654334433
No 89
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=86.55 E-value=2.9 Score=34.34 Aligned_cols=10 Identities=40% Similarity=0.634 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 032187 77 EMESANNILR 86 (145)
Q Consensus 77 ~l~~EN~~Lr 86 (145)
.+..||..|+
T Consensus 97 ~l~~en~~L~ 106 (276)
T PRK13922 97 QLEAENARLR 106 (276)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 90
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=86.15 E-value=4.3 Score=35.68 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILR 86 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr 86 (145)
.+...|+.||..|+.+++.|+.+...| ||..|+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 367789999999999999999888888 777776
No 91
>PRK09039 hypothetical protein; Validated
Probab=86.12 E-value=6.4 Score=33.92 Aligned_cols=7 Identities=14% Similarity=0.434 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 032187 93 TDRLRSL 99 (145)
Q Consensus 93 ~~rl~~l 99 (145)
..++..|
T Consensus 171 ~~~i~~L 177 (343)
T PRK09039 171 QAKIADL 177 (343)
T ss_pred HHHHHHH
Confidence 3344433
No 92
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=85.85 E-value=6 Score=39.19 Aligned_cols=73 Identities=27% Similarity=0.312 Sum_probs=54.0
Q ss_pred HHhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 032187 30 ISNRESARRSRMK------------KQKQMEDLVNEINHLESANAMLKQNIDSSVQ---RYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 30 ~sNReSArrSR~R------------Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~---~~~~l~~EN~~Lra~~~~L~~ 94 (145)
.-+|..|...-.+ +.+++++|+..+..|+.||..|..+|..|.. ....++..|..+-..-.++..
T Consensus 503 elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk 582 (1195)
T KOG4643|consen 503 ELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKK 582 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHH
Confidence 3455566655443 4478999999999999999999999998875 455667777777777667776
Q ss_pred HHHHHHHH
Q 032187 95 RLRSLNSV 102 (145)
Q Consensus 95 rl~~l~~i 102 (145)
-+..|+.+
T Consensus 583 ~idaL~al 590 (1195)
T KOG4643|consen 583 YIDALNAL 590 (1195)
T ss_pred HHHHHHHH
Confidence 66666643
No 93
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=85.68 E-value=7.8 Score=25.31 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 75 YVEMESANNILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 75 ~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
+..+..||..|+..+..+.+-++.|-++...+.
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999988888887763
No 94
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=85.55 E-value=3.8 Score=29.62 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 68 IDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 68 ~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
...+.+++..+..||..|+++...|..++..|++
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344445555555555555555555555555543
No 95
>PRK00736 hypothetical protein; Provisional
Probab=85.46 E-value=8.7 Score=25.68 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
.++.+||.+++.++.-...|...+.. -..+-..|..++..|..||..+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~-------Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAE-------QWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 45888888888887766666555443 2233355556666666666543
No 96
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.42 E-value=12 Score=31.63 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
.++.|-.+|..+......+..++..+...+..+..+=..|+..+.
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444443
No 97
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=85.32 E-value=9.1 Score=25.79 Aligned_cols=41 Identities=15% Similarity=0.039 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
|+..+..|+..+..+..++.........|..|+...-.++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~ 43 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLG 43 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333444444433333333
No 98
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.13 E-value=15 Score=31.10 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
+.|.++..++...+.+...+..++..+...+..+..+-..|.+++.++.
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555555554444
No 99
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=85.12 E-value=8.9 Score=27.15 Aligned_cols=40 Identities=25% Similarity=0.251 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQR------YVEMESANNILRVQAMELTD 94 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~------~~~l~~EN~~Lra~~~~L~~ 94 (145)
..+..+|..|..+|..|..+ ......||-.|+.++..|+.
T Consensus 20 ~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 20 SYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666644 44667899988888876654
No 100
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=85.04 E-value=2.4 Score=34.38 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 58 ESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 58 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
-.||..|...|..+...+..+..||..|+ +|..++++|.+||..+
T Consensus 124 L~ENe~Lh~~ie~~~eEi~~lk~en~~L~----elae~~~~la~~ie~l 168 (200)
T PF07412_consen 124 LEENEKLHKEIEQKDEEIAKLKEENEELK----ELAEHVQYLAEVIERL 168 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 35777788887777777777777776665 4777888888888665
No 101
>PRK02793 phi X174 lysis protein; Provisional
Probab=84.99 E-value=8.9 Score=25.93 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
+++.++..|+.........+..| ...=.....++..|..+++.|.+=+..+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~L-------n~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEEL-------NVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46667777666555554444432 2222222344577888888777655554
No 102
>smart00340 HALZ homeobox associated leucin zipper.
Probab=84.95 E-value=2.5 Score=26.36 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 69 DSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 69 ~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
+.|+.-+..|..||..|..++.+|+.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788899999999999988874
No 103
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=84.93 E-value=9.9 Score=30.73 Aligned_cols=41 Identities=29% Similarity=0.339 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA 89 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~ 89 (145)
.|..++..|+.+|..|..+...+..++..|..+|..|.-++
T Consensus 99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 34455555555555555555555555555555555555555
No 104
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=84.69 E-value=0.23 Score=43.55 Aligned_cols=47 Identities=34% Similarity=0.423 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 19 ANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLK 65 (145)
Q Consensus 19 ~~~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~ 65 (145)
...|+++++=.++||.+|-++|.||+.....|+.+...+..+|..|.
T Consensus 280 ~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 280 EDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred CCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 45577775558899999999999999999999999999888888876
No 105
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=84.41 E-value=9.7 Score=36.59 Aligned_cols=65 Identities=23% Similarity=0.325 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 41 MKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 41 ~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
.||...+..|..++..+..++..++..|..+...+...+.++..|.+.+..|+.+|..-+..+..
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~k 361 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEK 361 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35666777788888888888888888888888888888888888888888888888776665554
No 106
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=84.31 E-value=0.041 Score=48.18 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 19 ANVDERKRKRMISNRESARR---SRMKKQKQMEDLVNEINHLE-SANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 19 ~~~deRr~rR~~sNReSArr---SR~RKq~~l~eLe~~v~~L~-~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
...++++..|+..|+.+|.+ +|.+++.+...|..+|..|+ .++.. |..++..|..
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~---------------------l~~~is~Lqn 207 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSP---------------------LSPQISPLQN 207 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcc---------------------cCcccccccc
Confidence 45688999999999999999 99999999999999999888 54444 4555556666
Q ss_pred HHHHHHHHHHHH
Q 032187 95 RLRSLNSVLQIW 106 (145)
Q Consensus 95 rl~~l~~i~~~~ 106 (145)
..+.+..++...
T Consensus 208 e~~~l~~~l~~h 219 (395)
T KOG1414|consen 208 EADHLEKELNTH 219 (395)
T ss_pred HHHHHHHHHhcc
Confidence 666666666554
No 107
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=84.04 E-value=12 Score=28.01 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 38 RSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 38 rSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
+-+.=-...+.+|+.+|..|..|--.=..++..+-.+.+.+..+|..|...+.-|.+||+
T Consensus 7 kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLR 66 (120)
T PF10482_consen 7 KLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLR 66 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334455666777777776665555555555555555666666666666665555554
No 108
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=83.99 E-value=2.2 Score=33.56 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSV 102 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i 102 (145)
|+|+|.+..+-=..|.-|..++. .-..|..+++.||.++.+|...| .+.+.
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl-~V~ek 52 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL-IVQEK 52 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 68888888888888888888773 45667788888888888877777 44433
No 109
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=83.67 E-value=18 Score=27.74 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=38.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 28 RMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 28 R~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
-...|.+.+-.-=.-+++.+..|+.++..+..+...|...+..++..-..+..+=...+.++.+|.....++...|
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l 110 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLL 110 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445555555555556666666666666666665555555555444443333333333444444444433333333
No 110
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=83.35 E-value=9 Score=31.79 Aligned_cols=45 Identities=18% Similarity=0.384 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
=+++..+||.++..+..++..|+.++. .|.++|- .|=+++++|.+
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~-------~L~~DN~-------kLYEKiRylqS 135 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVE-------SLRADNV-------KLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-------HHHHHHHHHhh
Confidence 344556677666666665555554444 3444554 66666666644
No 111
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=83.19 E-value=3.1 Score=31.00 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 57 LESANAMLKQNIDSSVQRYVEMESANNILRVQA 89 (145)
Q Consensus 57 L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~ 89 (145)
.+.|...|+.+|..|.++...|+.||..||.-+
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345566677777777777778888888887654
No 112
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=83.07 E-value=16 Score=26.89 Aligned_cols=51 Identities=24% Similarity=0.240 Sum_probs=24.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 28 RMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEM 78 (145)
Q Consensus 28 R~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l 78 (145)
-+..-.|...-|+..=.+.-++|+..+..|+.++.....++..|...+..+
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444444455555555555555444444444444333
No 113
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=82.90 E-value=6.6 Score=30.57 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
.+|..+|..|+.+|..|...+..+..+...+......|+.+...++++-..
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e 142 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERE 142 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 345567777777777777666666666666666666677666666666543
No 114
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=82.86 E-value=14 Score=26.05 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=60.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 27 KRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 27 rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
-++...++.....=..|...+..||.++..|..|...-..++-.+......+..||..|+.++..=..-+..|
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L 78 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQL 78 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4566777777888888999999999999999999999999999999999999999999999886444333333
No 115
>PRK00295 hypothetical protein; Provisional
Probab=82.82 E-value=12 Score=25.06 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
++.++..|+.........+.. |...=.....++..|..++..|..=+..+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~-------Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQA-------LNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566655555444443332 222222233445777778777766555543
No 116
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=82.73 E-value=24 Score=30.43 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 60 ANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 60 eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
|...|..++..+..++..+..||..|...+.
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444555555555555556666665555543
No 117
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=82.59 E-value=23 Score=30.80 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
.+..|..++..|..+|..|..++..+..++..+..+-..+..+
T Consensus 138 ~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~ 180 (342)
T PF06632_consen 138 ANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEED 180 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777776666555544443
No 118
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.51 E-value=6.6 Score=32.21 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
|+.+.+.+..+-..|..++......+.....++..|+.|.+++......|
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 55666666666666777777777777777777777777777766655544
No 119
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.04 E-value=21 Score=27.42 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032187 77 EMESANNILRVQAMELT 93 (145)
Q Consensus 77 ~l~~EN~~Lra~~~~L~ 93 (145)
.+......+..++.++.
T Consensus 134 ~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 134 SLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 120
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.79 E-value=20 Score=27.13 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDS 70 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~ 70 (145)
.+..|..++..|+.+...+...+..
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333
No 121
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=81.52 E-value=15 Score=31.44 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 51 VNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 51 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
+.++...+.+...+..++..+...|.....|...|..++.....+|.....++
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li 286 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLI 286 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 33333333444444444444444444444555555555554444444444443
No 122
>PRK04406 hypothetical protein; Provisional
Probab=81.49 E-value=14 Score=25.19 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 57 LESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 57 L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
++.....|..++.....-+..|...=..-..++..|..+|+.|.+=+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333333332222222333455555555554444
No 123
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=81.48 E-value=17 Score=33.14 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQR-YVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~-~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
|..+-+.|++....+..+|...-+. ...+..|-..|+.+...+...|..|..
T Consensus 85 l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 85 LKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544443322 234444555555555555555555544
No 124
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=81.20 E-value=7.6 Score=26.04 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 59 SANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 59 ~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
.....+..++..+.++...+..||..|+.++..|.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455566666666677777888888888777664
No 125
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.02 E-value=15 Score=30.78 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
...++..++..+..||..|..++..+...|..+...=..|+.+...|...+.
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554444444444444444444444433333
No 126
>PRK04325 hypothetical protein; Provisional
Probab=80.89 E-value=15 Score=24.96 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRV---QAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra---~~~~L~~rl~~l~~i~~~~ 106 (145)
++..++.++..|+.........|..| |.++-. ++..|..+|+.|.+=+..+
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~L----------N~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGL----------NATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777776665555544433 444433 4578888888877655554
No 127
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=80.78 E-value=27 Score=31.26 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSV 102 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i 102 (145)
+.++..+-..-+..|+.|-.+|.+++..-.+.....+.+...|..++.+-..|-.++...
T Consensus 130 haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~m 189 (561)
T KOG1103|consen 130 HAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLM 189 (561)
T ss_pred HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444457889999999999999988899999999999999999888887776543
No 128
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=80.41 E-value=43 Score=30.30 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=37.2
Q ss_pred CCCCCCCCCCCChHHH-HHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 9 SSGSDSDPRYANVDER-KRKRMISNRESARRSRMK-----KQKQMEDLVNEINHLESANAMLKQNIDS 70 (145)
Q Consensus 9 ssgs~~~~~~~~~deR-r~rR~~sNReSArrSR~R-----Kq~~l~eLe~~v~~L~~eN~~L~~~~~~ 70 (145)
|.+|+.|.+.....++ .+--+..-|.+|++--.| =++++.+.|..+..|+.||.+|..+...
T Consensus 6 s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 6 SQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665543322222 122233444555544333 3578889999999999999998876654
No 129
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=80.29 E-value=30 Score=28.43 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 60 ANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 60 eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
++..|..+.+.+...|+.+..||+.|+.+
T Consensus 180 ~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 180 KVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443
No 130
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.13 E-value=36 Score=28.97 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 41 MKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 41 ~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
.+..+.+.+|+.+...|..|...|..+...+.+.-.....+.+.+.-++.++.+.+.+++.-+
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666655555544555555555555555555555444433
No 131
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.09 E-value=45 Score=30.01 Aligned_cols=71 Identities=20% Similarity=0.245 Sum_probs=61.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 31 SNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 31 sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
.++...++-=.++...+.+-..+.+.|+.+...+..++..++..+.....++..++.++..+..+|..|..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 55666777777778888888888899999999999999999999999999999999999999999998763
No 132
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=80.08 E-value=11 Score=31.29 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032187 62 AMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEIS 110 (145)
Q Consensus 62 ~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~~ 110 (145)
...+.++..|.++......+...|+.++..|+.---.|=+=+.++++..
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3333334444444444555555566666666655555555555555543
No 133
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=79.95 E-value=14 Score=24.10 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 64 LKQNIDSSVQRYVEMESANNILRVQAMEL 92 (145)
Q Consensus 64 L~~~~~~l~~~~~~l~~EN~~Lra~~~~L 92 (145)
+..++..+..++..+..+|..|+.++..|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444555555555555555
No 134
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=79.88 E-value=3.9 Score=27.10 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
++-|..++..|+..|.+|..++..|+
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554444
No 135
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=79.87 E-value=3.9 Score=30.61 Aligned_cols=30 Identities=37% Similarity=0.552 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
|..-+++|..++..|+-||..|+.++..-.
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 456789999999999999999999887643
No 136
>PHA02562 46 endonuclease subunit; Provisional
Probab=79.83 E-value=44 Score=29.70 Aligned_cols=42 Identities=7% Similarity=0.074 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILR 86 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr 86 (145)
.....|+.++..|+.++..+..++..+..++..+..+-..+.
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 399 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELV 399 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555544444443
No 137
>PRK00736 hypothetical protein; Provisional
Probab=79.75 E-value=15 Score=24.47 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRV---QAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra---~~~~L~~rl~~l~~i~~~~ 106 (145)
++.++..|+.........+.. =|.++-. ++..|+.+|..|.+=+..+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~----------Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEE----------LSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566665555444443332 2444433 3577888888777655554
No 138
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=79.65 E-value=8.8 Score=28.26 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILRV 87 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra 87 (145)
.+|=.|+.-...|.+++...++....|.+||.+|-+
T Consensus 63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQ 98 (120)
T KOG3650|consen 63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQ 98 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 344444444444455555544444455555555443
No 139
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=79.40 E-value=30 Score=27.58 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=40.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 26 RKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA 89 (145)
Q Consensus 26 ~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~ 89 (145)
.+..+....+-+-.+.....+...++.++..-..++..+...+..+...+..+..+...++...
T Consensus 91 l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~k 154 (190)
T PF05266_consen 91 LRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKK 154 (190)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566777777778888888888887776655555555555555555555555444444333
No 140
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=79.34 E-value=12 Score=27.06 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
+.|+...+-...+...+.+.+..++.+|..|..++..+...
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSK 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555666666666667777778888777766655443
No 141
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=79.20 E-value=10 Score=31.41 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMEL 92 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L 92 (145)
+-+-+|..++..|+.|+..|+.+++.+..++..+......|-.++..+
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788889999999999999988888888888877777777776654
No 142
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=78.84 E-value=11 Score=24.55 Aligned_cols=29 Identities=10% Similarity=0.289 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRY 75 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~ 75 (145)
+..++..+..++.||+.++..+..+.+-.
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555544433
No 143
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=78.80 E-value=30 Score=27.35 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 65 KQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 65 ~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
..-+..|++++......|..|..++..|+..+..+.
T Consensus 80 ~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~ 115 (182)
T PF15035_consen 80 AQVNALLREQLEQARKANEALQEDLQKLTQDWERLR 115 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444455555555554444444443
No 144
>PF15058 Speriolin_N: Speriolin N terminus
Probab=78.65 E-value=16 Score=29.65 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
+.|..+++.|-.||++|++.+.. ..||.+||.-
T Consensus 8 eGlrhqierLv~ENeeLKKlVrL--------irEN~eLksa 40 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRL--------IRENHELKSA 40 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHHH
Confidence 55667777777777777776663 4567766654
No 145
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=78.63 E-value=29 Score=32.50 Aligned_cols=19 Identities=16% Similarity=0.513 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032187 42 KKQKQMEDLVNEINHLESA 60 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~~e 60 (145)
.+..+|.+|+..+..++.+
T Consensus 119 EqEerL~ELE~~le~~~e~ 137 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQ 137 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666777777666555543
No 146
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.52 E-value=7.7 Score=33.55 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
.|..-+...+.+|..|..++..|++++..+..+|..||.++.
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la 110 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLA 110 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 344444555555555555555555555555555555555443
No 147
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=78.48 E-value=8 Score=35.06 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSV 102 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i 102 (145)
++|...|+.|.++|..|+.+++.++-++..+..||.-|+.--.++..|..+=.+.
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEf 100 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEF 100 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHH
Confidence 5788889999999999999999999999999999999998888888887643333
No 148
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=78.35 E-value=21 Score=30.62 Aligned_cols=84 Identities=24% Similarity=0.351 Sum_probs=52.7
Q ss_pred ChHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 20 NVDERKRKRMISNRESARRSRMK--KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 20 ~~deRr~rR~~sNReSArrSR~R--Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
..++|=+|=|++|- +-==.| =.-.++-|..++..|+.....+..++......+..+......|+.++.+|++.|.
T Consensus 88 evEekyrkAMv~na---QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 88 EVEEKYRKAMVSNA---QLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777772 211111 1234555666666666666666666655555566666677788888888888888
Q ss_pred HHHHHHHHH
Q 032187 98 SLNSVLQIW 106 (145)
Q Consensus 98 ~l~~i~~~~ 106 (145)
..-++|..+
T Consensus 165 ~rdeli~kh 173 (302)
T PF09738_consen 165 QRDELIEKH 173 (302)
T ss_pred HHHHHHHHC
Confidence 888877554
No 149
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=78.33 E-value=2.9 Score=26.04 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 56 HLESANAMLKQNIDSSVQRYVEMESANNILRVQA 89 (145)
Q Consensus 56 ~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~ 89 (145)
.|-..|..+..++..++.....|..||-.||+++
T Consensus 11 ~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 11 ELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -------------------HHHHHHHHHHHHHHH
T ss_pred HHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555556666555544
No 150
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.31 E-value=25 Score=26.12 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032187 79 ESANNILRVQAMELTDRLR 97 (145)
Q Consensus 79 ~~EN~~Lra~~~~L~~rl~ 97 (145)
..++..|++.+.++.+-++
T Consensus 95 ~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444433
No 151
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=77.93 E-value=16 Score=29.46 Aligned_cols=56 Identities=30% Similarity=0.368 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDS------------------SVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~------------------l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
|...|+..+..|+.+...++.++.. |...+..+...|-.+...+..|...+..+..
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554444 3445555566666666666666666555543
No 152
>PHA03162 hypothetical protein; Provisional
Probab=77.92 E-value=1.7 Score=33.13 Aligned_cols=27 Identities=44% Similarity=0.572 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNID 69 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~ 69 (145)
++.-+++|..++..|+-||..|+.++.
T Consensus 11 ~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 11 AQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999984
No 153
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=77.87 E-value=15 Score=30.33 Aligned_cols=21 Identities=29% Similarity=0.186 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 77 EMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 77 ~l~~EN~~Lra~~~~L~~rl~ 97 (145)
.+..|...||=+++++...|.
T Consensus 65 ~lq~ev~~LrG~~E~~~~~l~ 85 (263)
T PRK10803 65 DNQSDIDSLRGQIQENQYQLN 85 (263)
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 333344444444443333333
No 154
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=77.79 E-value=22 Score=27.59 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSV-QRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~-~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
++...-.++..-.+|+.++..+. .....+..++..|+.++..|..+|+
T Consensus 49 ~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 49 LENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333 2344555555555555555555444
No 155
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.75 E-value=35 Score=32.47 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRY 75 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~ 75 (145)
.+||.++..|+.|......++..+....
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555656555555555555555444433
No 156
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=77.43 E-value=22 Score=24.96 Aligned_cols=68 Identities=28% Similarity=0.445 Sum_probs=49.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
++..+.+.+=|++=..|.-+....++++.++..|......|-.++.....+...++.-|. ++..+|..
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~-------Evs~rL~~ 78 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANR-------EVSRRLDS 78 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHH
Confidence 456667777777777776666667899999998888888888888876666666666666 55555554
No 157
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=77.24 E-value=20 Score=28.62 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS---LNSVLQIW 106 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~---l~~i~~~~ 106 (145)
-++=.|.++..|+.+|..|..++..+ .....+|..+-..+..+.-+|-. +.+++..+
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~L----i~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L 100 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEEL----IENARENEAIFQRLHRLVLALLAARSLQELLQAL 100 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 34556688999999999998888854 46677999999999988888763 44555554
No 158
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=77.09 E-value=10 Score=23.76 Aligned_cols=29 Identities=28% Similarity=0.294 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 66 QNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
..+..+...+..|..+|..|+.++..|..
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445566666777777777777776653
No 159
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.09 E-value=34 Score=27.02 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032187 74 RYVEMESANNILRVQAM 90 (145)
Q Consensus 74 ~~~~l~~EN~~Lra~~~ 90 (145)
.+..+..++..|++++.
T Consensus 111 ~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 111 ELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 160
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=77.00 E-value=1.5 Score=31.66 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA 89 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~ 89 (145)
.+|+.|...+..|..+|..|..++..+...+..+...+..|+..+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 578888888888888888888887777666666655555555443
No 161
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=76.96 E-value=7.5 Score=29.71 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032187 75 YVEMESANNILRVQAMELTDRLRSLNSVLQIWAEI 109 (145)
Q Consensus 75 ~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~ 109 (145)
-..+..|=..|+.+...+..++..+...+..+..+
T Consensus 83 k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 83 KAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566788899999999999999998888776443
No 162
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.75 E-value=22 Score=24.58 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
-++.||.+|.+.-.-..-|.-++..|+++...+..|-..+......|..+-.
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ene 56 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENE 56 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 3566777665544444444444444444444443333333333333433333
No 163
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=76.65 E-value=36 Score=29.33 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 42 KKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
|-+..+..|-.+|..|+..-+.+..+...+.+++.....-...|.+++.+|.++..-.-.+++.
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666555555555666677777766655444443
No 164
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=76.19 E-value=37 Score=31.72 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
..+.+++|..++..|..+...+...+..+...+..+..|....+.+..+|...+.-
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l 381 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKL 381 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666655555555555555555555555555555555444443
No 165
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=75.22 E-value=13 Score=24.21 Aligned_cols=29 Identities=28% Similarity=0.467 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSS 71 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l 71 (145)
.++.+.+|+.+++.++.+|..|..++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555555555544
No 166
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=75.22 E-value=42 Score=27.12 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=48.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 26 RKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 26 ~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
+-++..-.+-..|.-.--+.++..|...+..-+..-......-..+......|..|....++++..|..++..|+.
T Consensus 107 R~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 107 RAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555566666666666666666666666666666666667777777777777777777666654
No 167
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=75.21 E-value=38 Score=27.11 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032187 73 QRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEI 109 (145)
Q Consensus 73 ~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~ 109 (145)
.++..+..++..|+.++..-+.+|..|.+|=.-+.+-
T Consensus 130 ~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSSR 166 (179)
T PF13942_consen 130 SELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSSR 166 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc
Confidence 4566777889999999999999999999998877554
No 168
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.10 E-value=15 Score=25.76 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 61 NAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 61 N~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
...+..++..+..+...+..+|..|+.++.
T Consensus 70 ~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 70 DQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555556666666666666666666554
No 169
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=75.01 E-value=39 Score=26.60 Aligned_cols=8 Identities=25% Similarity=0.243 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 032187 81 ANNILRVQ 88 (145)
Q Consensus 81 EN~~Lra~ 88 (145)
+|..|..+
T Consensus 119 ~~e~Le~e 126 (161)
T TIGR02894 119 RNEELEKE 126 (161)
T ss_pred HHHHHHHH
Confidence 33333333
No 170
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=74.08 E-value=57 Score=28.06 Aligned_cols=79 Identities=20% Similarity=0.217 Sum_probs=48.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Q 032187 28 RMISNRESARRSRMKKQKQMEDLVN--------------EINHLESANAMLKQNIDSSV--------------QRYVEME 79 (145)
Q Consensus 28 R~~sNReSArrSR~RKq~~l~eLe~--------------~v~~L~~eN~~L~~~~~~l~--------------~~~~~l~ 79 (145)
-++++=+--.+-|.-|+-+|+.||+ +.+.|..||+.|......+. .++..++
T Consensus 22 elE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lE 101 (307)
T PF10481_consen 22 ELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLE 101 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHH
Confidence 3344444444444444545555443 55667777777666555544 4455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 80 SANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 80 ~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
......+.++..|...|..+.+=+...
T Consensus 102 gQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 102 GQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888888888777666554
No 171
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=73.79 E-value=32 Score=27.26 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
|++=..+...|..-|.-|+.++.........|..++..|..+...+++.|.
T Consensus 69 LeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 69 LEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555555555555555555555555555555555544444
No 172
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.74 E-value=23 Score=23.42 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 58 ESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 58 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
..|....+..+..+..++...+..|..|..++..|..++.-+
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555566666677777777777776666543
No 173
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=73.66 E-value=22 Score=23.24 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRY 75 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~ 75 (145)
.++.|...|..|.....+|...+..++...
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666665555555555555544433
No 174
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=73.41 E-value=33 Score=25.05 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
-|..-|-.=+.-+..|...+..-.+.+..++.||..|......|..|+..|..=+...
T Consensus 16 vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 16 VLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445566677777777777888899999999999999999999988777654
No 175
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.13 E-value=75 Score=29.01 Aligned_cols=52 Identities=17% Similarity=0.061 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
..+.|+.++.+|..+|..|+..+..|+..+..+..|-..+-.++..++.++.
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3455667889999999999999999998888888777777666666665543
No 176
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=73.06 E-value=1e+02 Score=33.00 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 73 QRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 73 ~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
..++.++..+..|-.++.+|+..|..+..
T Consensus 1512 k~v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1512 KRVHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 177
>PHA03155 hypothetical protein; Provisional
Probab=73.04 E-value=5.5 Score=29.70 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDS 70 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~ 70 (145)
-+++|+.++..|+-||..|+.++..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999999864
No 178
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=72.97 E-value=61 Score=27.97 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 33 RESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 33 ReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
-|+++|--.-.+.++.+++.-...=+........+-..+.+++..+.+||--|+.++.....+...-.
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666667777766555444444555556677888999999999999999998887765443
No 179
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=72.82 E-value=40 Score=25.80 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 77 EMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 77 ~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
.+..+-..+......+...+..+++
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 180
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.81 E-value=71 Score=31.40 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
-...++.|...+..|+.||.+|..++......+..+..++..|+.++.
T Consensus 669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444455555555555555555554444445555555554444
No 181
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=72.73 E-value=9 Score=27.24 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSS 71 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l 71 (145)
|+.+++.|...+..++.+|..|..++...
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888888888887777777776654
No 182
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=72.59 E-value=44 Score=26.08 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
.|.+.|..++..++.+...+...+......+..+...=..+..++.-+..++..|+.-...
T Consensus 79 ~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea 139 (158)
T PF09486_consen 79 RYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEA 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777777666666666666666677777777777776655544
No 183
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=72.52 E-value=28 Score=24.75 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032187 78 MESANNILRVQAMELTDRL 96 (145)
Q Consensus 78 l~~EN~~Lra~~~~L~~rl 96 (145)
+..+|..|..++..|+.+|
T Consensus 54 L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 54 LENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 184
>PHA03386 P10 fibrous body protein; Provisional
Probab=72.40 E-value=34 Score=24.69 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcCCCCCCCcCCCC
Q 032187 63 MLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEI-SGINVEIPEIPDPLMKP 126 (145)
Q Consensus 63 ~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~-~g~~~~~~~~~d~~~~p 126 (145)
.+-.++..+......+...|..|-++.+.| ..++.-+..++++ +| -++|++|++..-+
T Consensus 16 avd~KVdaLQ~qV~dv~~n~~~LDa~~~qL----~~l~tkV~~Iq~iLn~--d~iPd~P~p~~p~ 74 (94)
T PHA03386 16 EVDTKVDALQTQLNGLEEDSQPLDGLPAQL----TELDTKVSDIQSILTG--DEVPDPPDPPLPL 74 (94)
T ss_pred HHhhHHHHHHHHHHHHHhcchhhhhHHHHH----HHHHHHHHHHHHhcCc--ccCCCCCCCCCCC
Confidence 333444444444444444444444444333 3333333333333 33 3478777665443
No 185
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=72.13 E-value=52 Score=26.77 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 41 MKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEM---ESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 41 ~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l---~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
.+-++|-++++.--..|+.-|.--.-++....++.... ..+=..++.|+..|++.|.+||.|..-
T Consensus 130 ~~~~~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ~~kLa~NL~sLN~VYg~ 197 (202)
T TIGR03513 130 AQQKKYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEEMEKMAANLTSLNEVYGG 197 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457888888888888888888888877776665443 345567899999999999999988754
No 186
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.05 E-value=29 Score=23.85 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLK 65 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~ 65 (145)
+++.+||.+++--+.-...|.
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn 28 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELN 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355666666655444444443
No 187
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=71.68 E-value=65 Score=27.72 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
+-+.++..=+.|...|+.++..++
T Consensus 79 es~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 79 ESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333333444444444444433
No 188
>PRK10963 hypothetical protein; Provisional
Probab=71.65 E-value=36 Score=27.39 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR---SLNSVLQIWA 107 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~---~l~~i~~~~~ 107 (145)
.|.++..|+.+|..|..++..+ .....+|..+-.++..|.-+|- ++.+++..+.
T Consensus 42 ~ErQ~~~LR~r~~~Le~~l~~L----i~~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~ 98 (223)
T PRK10963 42 VEWQMARQRNHIHVLEEEMTLL----MEQAIANEDLFYRLLPLQSRLAAADSLQDMLMRLH 98 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4667888888888888777754 4567799999999988888775 4666666654
No 189
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=71.26 E-value=44 Score=25.60 Aligned_cols=55 Identities=11% Similarity=0.281 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
+++....+..|...-..+..+-..+...+..+..|...|..-..++..+|.....
T Consensus 23 ~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~ 77 (157)
T PF04136_consen 23 TDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEE 77 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 4444455566666666666666666677777778888888888888888886543
No 190
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=71.21 E-value=25 Score=32.80 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 64 LKQNIDSSVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 64 L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
|..++..+.+..+.|..||..||.++.+|.
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 444444444444444555555555555444
No 191
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.08 E-value=65 Score=27.44 Aligned_cols=56 Identities=16% Similarity=0.289 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
.+.+.+|+.+...|..+-...-...+.+...+..+..|...|..++....++|..|
T Consensus 77 ~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 77 DQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544445555555555555555555666666655555555544
No 192
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=71.05 E-value=20 Score=23.67 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDS 70 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~ 70 (145)
+++|+..+..|+.|...+...+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888887776664
No 193
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=70.81 E-value=25 Score=24.31 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 57 LESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 57 L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
...+...+..++..+......+..||..|+.+...|..
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455566666777777788888888888888876653
No 194
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.81 E-value=58 Score=26.79 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
.+..++.|+..++..+..+...+..+...|..|..++.++..++.
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 455566666667777777777777777777777777766655444
No 195
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=70.35 E-value=5.7 Score=33.72 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
.++.++|.+|..|+--|..|..++..-...|..+..--..+|+++..+..+|+.|.+
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE 273 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEE 273 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccH
Confidence 467789999999999999999999877777776666666789999999999987754
No 196
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=70.19 E-value=56 Score=26.31 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
-...+..||..|...+..+.+.+..|...+..|..+-..|...
T Consensus 157 ~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 157 FTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666655555555555443
No 197
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=70.11 E-value=38 Score=35.66 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=56.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 30 ISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 30 ~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
.+|+ .=|....+.-..+.+|..++..|+.+...|...+..+...+....+++..|+.+...+..|.+.|-.
T Consensus 1229 EsN~-~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~ 1299 (1822)
T KOG4674|consen 1229 ESNK-VLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLE 1299 (1822)
T ss_pred HhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 3466777788888899999999999988888888888888888888888888888887777776644
No 198
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=70.09 E-value=83 Score=28.27 Aligned_cols=80 Identities=24% Similarity=0.235 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHH---HHHHHHHHHHHH
Q 032187 19 ANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHL----------------ESANAMLKQN---IDSSVQRYVEME 79 (145)
Q Consensus 19 ~~~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L----------------~~eN~~L~~~---~~~l~~~~~~l~ 79 (145)
+..++|.+||+...-|-=||-|..=...+.+|-.-|-.. ..-+..|++. ...+..+-..|+
T Consensus 224 ~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le 303 (411)
T KOG1318|consen 224 ATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLE 303 (411)
T ss_pred cchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 456788888888999999999999888888887643211 1122222222 223333445566
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032187 80 SANNILRVQAMELTDRLRS 98 (145)
Q Consensus 80 ~EN~~Lra~~~~L~~rl~~ 98 (145)
..|..|..++.+|...+..
T Consensus 304 ~~n~~L~~rieeLk~~~~~ 322 (411)
T KOG1318|consen 304 STNQELALRIEELKSEAGR 322 (411)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7777777777777665543
No 199
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=70.04 E-value=1e+02 Score=31.01 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 38 RSRMKKQKQMEDLVNEI-NHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMEL 92 (145)
Q Consensus 38 rSR~RKq~~l~eLe~~v-~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L 92 (145)
.+..+..+.+.+++.+. ..+..+..+...++..|.+....++..++.|+++..++
T Consensus 372 ~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444433 33333334444444445555555555555555554433
No 200
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=69.91 E-value=22 Score=25.16 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
+|...--||..|+.++..+...+ ...|-..|-+++..|++.|
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~l 86 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQL 86 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhhC
Confidence 55667778999999998887666 6778888888988888753
No 201
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=69.86 E-value=23 Score=23.63 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
....+..++.++..++.+|..|..++..+.
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444555566666666666666665555443
No 202
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=69.65 E-value=56 Score=30.40 Aligned_cols=45 Identities=9% Similarity=0.156 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA 89 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~ 89 (145)
+.+..+..++..+..||..|..++..+..+...+..||..|.+-+
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~L 263 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHL 263 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344555556666666677777777777666666666666665544
No 203
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=69.61 E-value=55 Score=26.05 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
++..+..|+...-+|..+...+.........|...|+..+..+...+..+
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444344444455555555555555544443
No 204
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.54 E-value=37 Score=28.45 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcC
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVE 115 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~~g~~~~ 115 (145)
+|..++..+++.-.+|..++..+........ ..--.....+.++|..|+-++-.+ .+.|.++.
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~---~~~~t~~~~ie~~l~~l~~~aG~v-~V~G~Gl~ 116 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR---RSVLTDDAALEDRLEKLRMLAGSV-PVTGPGLV 116 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHhHHHHHHHHHHHHHHHhccC-CCcCCcEE
Confidence 4444555555555555555555544444443 001112224555777776666444 45554333
No 205
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=69.15 E-value=58 Score=26.15 Aligned_cols=34 Identities=21% Similarity=0.074 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNIDSSVQRYVEMESANNILR 86 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr 86 (145)
++..|+..-..+..++-.+...+..++.|...|+
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333333333333333
No 206
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=69.10 E-value=28 Score=25.28 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 71 SVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 71 l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
+.+.+..+..++..|+..+.++.+.+..
T Consensus 85 l~~~~~~~~~~~~~l~~~~~~~~~~~k~ 112 (118)
T PF13815_consen 85 LEERLQELQQEIEKLKQKLKKQKEEIKK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444433
No 207
>PHA03395 p10 fibrous body protein; Provisional
Probab=68.97 E-value=39 Score=24.04 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCCCCCcC
Q 032187 84 ILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPDPL 123 (145)
Q Consensus 84 ~Lra~~~~L~~rl~~l~~i~~~~~~~~g~~~~~~~~~d~~ 123 (145)
.|..++..+...|..+++.+..+.++-. -++|++|+..
T Consensus 39 ~l~~kLdaq~~~Ltti~tkv~~I~diLn--pdiPdlP~~~ 76 (87)
T PHA03395 39 EINEKLDAQSASLDTISSAVDNITDILN--PDIPDVPDVP 76 (87)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHccC--CCCCCCCCCC
Confidence 4555566666777777777766655522 2678777643
No 208
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=68.95 E-value=38 Score=30.32 Aligned_cols=68 Identities=13% Similarity=0.202 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 33 RESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 33 ReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
-++|---|.|-.+--...|..++.+..|...|+.+++.......-+..||..|+.-+..|.+-++.+.
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 35666677777777777888888888899999999988888888888999999999888887777654
No 209
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.85 E-value=49 Score=31.91 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQ---------------------NIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~---------------------~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
.+|.++..++..+..||..|.. ++..+..++..++.||..|+-++.-|...|.
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777776654 3455667778888889888888765554443
No 210
>PRK00846 hypothetical protein; Provisional
Probab=68.64 E-value=36 Score=23.54 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 64 LKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 64 L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
|..++.....-+..|...=.....++..|+.+++.|.+=+..+.
T Consensus 18 LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 18 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444443333344433333445566788888888877666554
No 211
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=68.35 E-value=31 Score=22.60 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
.++.+|..+.+.|..++..|......+..+=...+.+.+.-..||..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777777666666655555555555555555555555543
No 212
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=67.92 E-value=39 Score=30.84 Aligned_cols=54 Identities=7% Similarity=0.153 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
-+..+.+-+.++++|+++...|+.+++.+......++..=..|..++..|..++
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345577777788888888877776666555444444444444444444444444
No 213
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=67.91 E-value=1.7e+02 Score=31.43 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQ 104 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~ 104 (145)
..+++++.....++.|...+..++..+......+..-|+.|-.+...|..+++.+.+.++
T Consensus 943 ~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~ 1002 (1930)
T KOG0161|consen 943 EQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQ 1002 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444443
No 214
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=67.86 E-value=26 Score=24.87 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 032187 77 EMESANNILRVQA 89 (145)
Q Consensus 77 ~l~~EN~~Lra~~ 89 (145)
.+..||..|+.++
T Consensus 60 ~l~~E~e~L~~~l 72 (87)
T PF12709_consen 60 ALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 215
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=67.66 E-value=45 Score=24.60 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEME 79 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~ 79 (145)
.-|++|..+|...+.||-.|+.++..|-+.+..|.
T Consensus 70 nTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 70 NTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 34455555555555555555555555444444443
No 216
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=67.36 E-value=92 Score=31.26 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 42 KKQKQMEDLVNEINHLESAN-AMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~~eN-~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
+++..++.|+.+|..++.+- ..+..++.....++..|..|+..|..++..|...++.+
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666665554 55555666666666666666666666666666665543
No 217
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.33 E-value=80 Score=27.02 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 70 SSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 70 ~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
.++..+..+..++...+..+.++..++..++..|
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I 241 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKI 241 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444333
No 218
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=66.76 E-value=34 Score=22.60 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
+..++...+..|..+..++.....+...|..+=..|+.++.+++.+
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4445566777888888888888888888888888888888887653
No 219
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=66.63 E-value=25 Score=29.59 Aligned_cols=10 Identities=30% Similarity=0.524 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 032187 77 EMESANNILR 86 (145)
Q Consensus 77 ~l~~EN~~Lr 86 (145)
.++.||..||
T Consensus 94 ~l~~EN~~Lr 103 (284)
T COG1792 94 SLEEENKRLK 103 (284)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 220
>PRK14127 cell division protein GpsB; Provisional
Probab=66.24 E-value=22 Score=26.13 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 74 RYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 74 ~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
.|..+..||..|+.++..|..+|..+..
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666665566555555544
No 221
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.03 E-value=90 Score=27.55 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
-++.++.+.+..+.|.+--+.|..-.+.|......|+.+=..|.+.+.-|.
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 334444444444444443333333333333333333333333333333333
No 222
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=66.02 E-value=15 Score=31.99 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 74 RYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 74 ~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
.|..+..||..|+++..+|..++..
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 223
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=65.50 E-value=42 Score=24.06 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
+.+++.+--.+...|.++..++..+......-.. +..++.++..+...++.
T Consensus 19 L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~ 69 (106)
T PF05837_consen 19 LSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKK 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHH
Confidence 3444444444444455544444444433222222 44556666666655554
No 224
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.45 E-value=1.1e+02 Score=28.01 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=43.0
Q ss_pred HHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 032187 28 RMISNRESARRSRMKKQKQ----MEDLVNEINHLESANAMLKQNIDSSVQRYVEME----SANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 28 R~~sNReSArrSR~RKq~~----l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~----~EN~~Lra~~~~L~~rl~~l 99 (145)
-..+|=++++.+=.+|.+. ++.+..+...++.+|..|.........++..++ ..+...-+++.+|.++|+.|
T Consensus 368 ~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 368 QESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445666666666666543 455666677777777777766666555554443 23444444555555555554
Q ss_pred HHHH
Q 032187 100 NSVL 103 (145)
Q Consensus 100 ~~i~ 103 (145)
--.|
T Consensus 448 mf~l 451 (493)
T KOG0804|consen 448 MFFL 451 (493)
T ss_pred heeh
Confidence 4333
No 225
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.41 E-value=82 Score=27.82 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 61 NAMLKQNIDSSVQRYVEMESANNILRVQAME 91 (145)
Q Consensus 61 N~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~ 91 (145)
-++|....+.|+++.+.+...=.+|.....+
T Consensus 248 ~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 248 KQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334444444444444444444444444444
No 226
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=65.32 E-value=71 Score=30.67 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQR---YVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~---~~~l~~EN~~Lra~~~~L~~rl 96 (145)
+.|+.||-.|..++..|++. |.++.-|+..|..++.-|..+|
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~ql 144 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQL 144 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555532 3344444444444444444333
No 227
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.02 E-value=70 Score=25.51 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
..|..+...++............+..||..|...+.
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~ 65 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLK 65 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333334444444333333344444444444443333
No 228
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=65.01 E-value=65 Score=28.16 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
++++.|+.++..|+.+..+|...+.... .....-..|..++..+..++..+..++...
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~ 299 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAEY 299 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6777888888888887777777655433 334444557777778888888887777654
No 229
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=64.68 E-value=28 Score=33.00 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
.+|..+|.+|.-|+..|+.++...++.-..++..+..|..++.
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk 367 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELK 367 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888777766655555555555544443
No 230
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=64.66 E-value=68 Score=29.06 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMEL---------------TDRLRSLNSVLQI 105 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L---------------~~rl~~l~~i~~~ 105 (145)
...+..|...|+.+-..+...++...-.+..|..||..|+.+.... ..+++.+|++...
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~ 102 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIREL 102 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666666666677777776655321 2456677777655
No 231
>PF14645 Chibby: Chibby family
Probab=64.39 E-value=27 Score=25.79 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESAN 82 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN 82 (145)
|..+..+|+.||.-|+-++..|-..+....+|-
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDMLtettae~ 108 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDMLTETTAEA 108 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555444444333333
No 232
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=64.38 E-value=1.1e+02 Score=28.00 Aligned_cols=50 Identities=8% Similarity=0.126 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
.+++.++..+..+...+..+...+...+..+..+-...+..+..+...|.
T Consensus 379 sel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 379 SELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444444444433
No 233
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=64.32 E-value=81 Score=27.84 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 75 YVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 75 ~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
+..+...-..|..++.+|..++..|.+-+..
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555555555555555544433
No 234
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=64.11 E-value=1.1e+02 Score=29.03 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQR----------YVEMESANNILRVQAME 91 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~----------~~~l~~EN~~Lra~~~~ 91 (145)
.+..+|+..+..|+.++..|..++..+... +..++.++..|+.++.+
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666555555433 23445566666655543
No 235
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.39 E-value=98 Score=29.37 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
+..++..|..|+.||+.|...+..++
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k 449 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELK 449 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 236
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.20 E-value=93 Score=30.62 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
+|+++|...+..+......+-.++..+++....+..||..|.+++..+.....+|
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql 704 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQL 704 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555554443333333
No 237
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=62.54 E-value=75 Score=25.06 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
..+++.++..|+.++..|..++..++.++..++..+...++.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~ 163 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQE 163 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888888888888888888888877766655443
No 238
>PRK14160 heat shock protein GrpE; Provisional
Probab=62.47 E-value=84 Score=25.60 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA 89 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~ 89 (145)
..+..|+.++..|+.++..|..++..++.+|..+.+|-.-.|.+.
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777766555444444
No 239
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=62.29 E-value=76 Score=29.57 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 42 KKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
+++.-+.++..++..+......+...+............||..|-.++..+.++++.+
T Consensus 195 keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~ 252 (596)
T KOG4360|consen 195 KEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYL 252 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444444555554444444444555555555555556667777777777666665543
No 240
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=62.20 E-value=86 Score=25.59 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 75 YVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 75 ~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
+..+..||..|++++.+|..++.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 241
>PRK04863 mukB cell division protein MukB; Provisional
Probab=62.11 E-value=2e+02 Score=29.90 Aligned_cols=19 Identities=5% Similarity=-0.053 Sum_probs=10.7
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 032187 25 KRKRMISNRESARRSRMKK 43 (145)
Q Consensus 25 r~rR~~sNReSArrSR~RK 43 (145)
+.+.+...++.|++...-+
T Consensus 322 rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 322 AESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666655443
No 242
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=61.91 E-value=73 Score=24.68 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 59 SANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 59 ~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
.++..+..++..++.++...+.|...|+.|+..|..
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555566666666666655544
No 243
>PLN02678 seryl-tRNA synthetase
Probab=61.90 E-value=85 Score=28.27 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYV----------EMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~----------~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
.+-.|..+...+..+...|+.+.+.+...+. .+..+=..|++++..|...+..+.+
T Consensus 34 ~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~ 99 (448)
T PLN02678 34 EVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKA 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444544455555555555554444443 2333344555555555555554443
No 244
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=61.83 E-value=1e+02 Score=26.39 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
++|-.|-..|.-++..|+..+..++.....|+.+
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re 134 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQRE 134 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555554444444443
No 245
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=61.35 E-value=57 Score=23.26 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 75 YVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 75 ~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
+..+..+-..|+..+..+...+..
T Consensus 83 i~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 83 IKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 246
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=60.55 E-value=71 Score=26.90 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
-+-..-.+|..+..++..-++....++.+...|++++..|.........+|
T Consensus 180 ~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~i 230 (258)
T PF15397_consen 180 ALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVI 230 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHh
Confidence 444555788889898888888889999999999999999888887555433
No 247
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.29 E-value=1.3e+02 Score=30.64 Aligned_cols=73 Identities=22% Similarity=0.235 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 032187 34 ESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR---SLNSVLQIW 106 (145)
Q Consensus 34 eSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~---~l~~i~~~~ 106 (145)
++.+.+-.+++..+++++..+..+..|..+....+..+......+...=..++.+++++..-+. +=+.|+..+
T Consensus 531 ~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al 606 (1293)
T KOG0996|consen 531 LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDAL 606 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4445556677777888888888888888888777777777777777767777777777776554 344555554
No 248
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=60.00 E-value=99 Score=26.75 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 40 RMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYV 76 (145)
Q Consensus 40 R~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~ 76 (145)
|.+..+.+.+|+.+...|..+|...+..+..+...+.
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~ 139 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLK 139 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4445555555555555555555555554444444433
No 249
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=59.91 E-value=44 Score=29.18 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQR 74 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~ 74 (145)
..|+..|.+|..+|..-.+.
T Consensus 3 dd~QN~N~EL~kQiEIcqEE 22 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEE 22 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHH
Confidence 44455555555555544333
No 250
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=59.90 E-value=1.4e+02 Score=27.71 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSV-------QRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~-------~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
++.++.||.++..|+.+...|..++..-. ..+..+..|=..++.++.++-.+-..|.+.+..+
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888877777764321 1345555566677777777777777777666554
No 251
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=59.87 E-value=1e+02 Score=26.53 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEM 78 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l 78 (145)
-....|..+|+.|+..|..+++++...+..+..|
T Consensus 78 ~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~egl 111 (389)
T PF06216_consen 78 NEWISLNDQVSHLQHQNSEQRQQIREMREIIEGL 111 (389)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666666666666666666555555444
No 252
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=59.79 E-value=81 Score=29.79 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 39 SRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 39 SR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
++.--.++-.+|+.+|..|+.++..+..+|..+...+...+.+=..-..++.+.+++
T Consensus 73 ~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 73 SRENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 253
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=59.65 E-value=76 Score=29.67 Aligned_cols=47 Identities=28% Similarity=0.378 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
+..+++|..++..+..+...+...+..+.........++..|..++.
T Consensus 334 ~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 334 QEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888887777777777777777777766654
No 254
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=59.51 E-value=63 Score=23.15 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHL--ESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 44 q~~l~eLe~~v~~L--~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
..+++.+|.++..| ..+...|.-.++ .+..+=..|.+++..+.+.+.-|
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~-------el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELA-------ELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555 444444444444 44455555555665555555443
No 255
>PRK14127 cell division protein GpsB; Provisional
Probab=58.75 E-value=45 Score=24.49 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 77 EMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 77 ~l~~EN~~Lra~~~~L~~rl~ 97 (145)
.|..+|..|+.++.++..++.
T Consensus 48 ~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 48 ELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344555666666666666655
No 256
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=58.69 E-value=1e+02 Score=25.25 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
..-..++..++.|-.+|+.....-..+...| ..||+|+.++.+++..|
T Consensus 45 s~k~eel~~~~~eEe~LKs~~q~K~~~aanL----~~lr~Ql~emee~~~~l 92 (211)
T COG3167 45 SGKLEELEELEAEEEELKSTYQQKAIQAANL----EALRAQLAEMEERFDIL 92 (211)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhch----HHHHHHHHHHHHHHHHH
Confidence 3334445555555555555544322222222 34788888888777654
No 257
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=58.50 E-value=81 Score=30.29 Aligned_cols=54 Identities=28% Similarity=0.254 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD---RLRSLN 100 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~---rl~~l~ 100 (145)
.+.|+.+...|+.|..+++.+=..+-+.|..|+.||-.|..++.-|+. .+.+|.
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~K 127 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLK 127 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445555555555565555555555667777777788877777777664 344454
No 258
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=58.28 E-value=32 Score=25.32 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 76 VEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 76 ~~l~~EN~~Lra~~~~L~~rl 96 (145)
..|+.||+-|+-+++-|-+-|
T Consensus 82 ~~LeEENNlLklKievLLDML 102 (108)
T cd07429 82 QQLEEENNLLKLKIEVLLDML 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444433
No 259
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=58.26 E-value=29 Score=24.60 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 64 LKQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 64 L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
+......|...+..+..+|..|..++.++++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556667778888899999999988887764
No 260
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=58.22 E-value=55 Score=22.06 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
.|...+..|...|..|...+...+++...+......-.+.+..|+-.+++-..++..
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e~ 58 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKEA 58 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 466778888888888888888888888777777777777777776666655555444
No 261
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.84 E-value=35 Score=23.83 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQN 67 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~ 67 (145)
.++.|..++..|..+|..|..+
T Consensus 76 ~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 76 QIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555554443
No 262
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=57.65 E-value=47 Score=23.51 Aligned_cols=49 Identities=27% Similarity=0.268 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
+...|..||++|..+.. ....+.+|...+...++=..++. -.+|++-+.
T Consensus 31 ~~~kL~~en~qlk~Ek~-----~~~~qvkn~~vrqknee~~~~~s-r~~V~d~L~ 79 (87)
T PF10883_consen 31 QNAKLQKENEQLKTEKA-----VAETQVKNAKVRQKNEENTRRLS-RDSVIDQLQ 79 (87)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHhhccCC-HHHHHHHHH
Confidence 34455555555544433 23455688888888877665553 234555443
No 263
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=57.57 E-value=1.5e+02 Score=27.01 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 60 ANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 60 eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
||..|...+..-.+.+.....||..|.+...+|..||..
T Consensus 443 EnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaa 481 (593)
T KOG4807|consen 443 ENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAA 481 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 344444444443444444455666666666666666653
No 264
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=57.32 E-value=1.2e+02 Score=25.74 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
...++.++.++...+.+...+..++..+..++..++.+=..|...+.
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~ 252 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIK 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666666666666555555555544444433333
No 265
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=57.26 E-value=86 Score=25.41 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSV--QRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~--~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
..+-+++.+++.|+.+-.+|..-+.... +....++.|=...+.+++.+..+++.|.+-+++
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 3344666666666666666655444322 334455666667788888888888888776644
No 266
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=57.19 E-value=16 Score=26.43 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 68 IDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 68 ~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
+...+.....++..|..|..++.+....|..+..-+..+
T Consensus 39 Va~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~L 77 (100)
T PF06428_consen 39 VADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKEL 77 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666777777777776666555554433333
No 267
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=57.15 E-value=1.3e+02 Score=25.90 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYVEMESANNIL 85 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 85 (145)
.++++|+.++.+++..-..+...+..|+.-|..|
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3666777777777666666666666666666665
No 268
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.05 E-value=1.1e+02 Score=25.16 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 41 MKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEME-------SANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 41 ~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~-------~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
.....+|.++..+...|..|-.....++..+.+.+..++ .|....+..+..+.+.+.-|.+-++.+
T Consensus 28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578888888888888888887777777776666554 455555555555555555444444443
No 269
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=56.82 E-value=1.5e+02 Score=28.75 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 40 RMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 40 R~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
-...+..++.++.+...++..+..|+..+....+++..|.+++..|+.++.+-...+..
T Consensus 303 ~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~k 361 (775)
T PF10174_consen 303 LEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEK 361 (775)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777777777777777777777777777777666655544443
No 270
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=56.76 E-value=1e+02 Score=24.83 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 54 INHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 54 v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
+.-|+.|-..|...+..=+.....++.|+..+-.++.+=..+++++..++
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~~l~L 185 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSFVLML 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999998888999999999999999988777888765443
No 271
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=56.71 E-value=1.1e+02 Score=25.12 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
..+..|..++..|+..|..|...+..+.
T Consensus 223 ~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 223 RQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 3444444455555555555555544444
No 272
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=56.68 E-value=1e+02 Score=24.82 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 79 ESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 79 ~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
..+-+.|+.++...+.||..+.+
T Consensus 122 Qe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 122 QEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554443
No 273
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=56.56 E-value=1.4e+02 Score=26.33 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 78 MESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 78 l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
+..+-..|+.++.+|...+..+.
T Consensus 74 l~~~~~~l~~~~~~~~~~~~~~~ 96 (418)
T TIGR00414 74 IKKELKELKEELTELSAALKALE 96 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555554443
No 274
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=56.34 E-value=51 Score=24.97 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 51 VNEINHLESANAMLKQNIDSSVQRYVEMESANNIL 85 (145)
Q Consensus 51 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 85 (145)
|.-+..|+.+...=-.++..|++++..+...|..|
T Consensus 93 E~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 93 EIVVKKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344443333344444444444444444433
No 275
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=56.30 E-value=1.4e+02 Score=27.57 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
++++|..++............+...|..++...+.+...+..++.++.
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~ 468 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEAN 468 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333333333333333333333333333333333333
No 276
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=56.27 E-value=67 Score=27.56 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcC
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESAN-------NILRVQAMELTDRLRSLNSVLQIWAEISGINVE 115 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN-------~~Lra~~~~L~~rl~~l~~i~~~~~~~~g~~~~ 115 (145)
++.+|+.+++.-...+.+|+.....|-..+..|..+- -+|..++.+-+++++.|.--+..++...|...+
T Consensus 237 ria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~ 313 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKD 313 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4455555555555555555555554444444443322 234444445555555554444444444454333
No 277
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=56.04 E-value=62 Score=21.99 Aligned_cols=33 Identities=12% Similarity=0.312 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEM 78 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l 78 (145)
-+++++..+..++.+-..+..+...+......+
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l 59 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNEL 59 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 355555556665555555555555544433333
No 278
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=56.02 E-value=1.3e+02 Score=26.10 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISG 111 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~~g 111 (145)
+++.+|..+.+.|.+.-..-...+..|.+.+...+.|-..|.+.++.|.-++..+.+-++.+ .+.|
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLl-aa~g 74 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELL-AACG 74 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHH-HhcC
Confidence 45667777777777666666666777888888999999999999999999999988877776 4444
No 279
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.73 E-value=1.1e+02 Score=25.23 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q 032187 51 VNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR---SLNSVLQIWAE 108 (145)
Q Consensus 51 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~---~l~~i~~~~~~ 108 (145)
|.++..++..|.+|..+++.+ .....+|..|-.++..|+.+|- ++.+++..+..
T Consensus 44 e~ql~r~R~~~~~Le~~l~~L----~~~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~ 100 (218)
T COG3159 44 ERQLARLRNRIRELEEELAAL----MENARANERLFYRLHALQLDLLDARSLDDLLRRVDR 100 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 456667777777777776654 3566789999999988888876 56666666544
No 280
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=55.54 E-value=69 Score=22.38 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQ---RYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~---~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
.|..++..|+.+-..+..+++.+.. ....+..+=..|+.++.++...+..+..-+..+
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555556666655554 356777778888888888888887776655443
No 281
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=55.48 E-value=1.4e+02 Score=30.02 Aligned_cols=51 Identities=16% Similarity=0.363 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
.....++..|+.+.+.+..++..+++.|....-.|..|+.+...|...|..
T Consensus 444 ~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~ 494 (1041)
T KOG0243|consen 444 KEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQN 494 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666677777767766666666666666655555443
No 282
>PRK10722 hypothetical protein; Provisional
Probab=55.48 E-value=1e+02 Score=25.94 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032187 73 QRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAE 108 (145)
Q Consensus 73 ~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~ 108 (145)
.+++.+..++..|..++...+.+|..|.+|=.-+.+
T Consensus 176 ~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLSs 211 (247)
T PRK10722 176 SELDALRQQQQRLQYQLELTTRKLENLTDIERQLSS 211 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555566667777777777777777777666633
No 283
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=55.47 E-value=86 Score=24.05 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 032187 71 SVQRYVEMESANN 83 (145)
Q Consensus 71 l~~~~~~l~~EN~ 83 (145)
|...+..+..+|.
T Consensus 56 Lk~~i~~lq~~~~ 68 (155)
T PF06810_consen 56 LKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444444
No 284
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=55.33 E-value=65 Score=30.65 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSS-------VQRYVEMESANNILRVQAM-------ELTDRLRSLNSVLQI 105 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l-------~~~~~~l~~EN~~Lra~~~-------~L~~rl~~l~~i~~~ 105 (145)
.+-.+|..|-.||.+|...-+.| ..+.+.|.+||.+||-++. .|..+++-|.+-|..
T Consensus 298 GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~ 368 (832)
T KOG2077|consen 298 GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKK 368 (832)
T ss_pred cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888877665443 3667788889999887764 455555555554444
No 285
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=55.26 E-value=75 Score=22.77 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
.+.+...+.+.+..|..|...+...++........+..++.+..+....
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ 82 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRES 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666677777766666555666666666666666554443
No 286
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=55.26 E-value=1.3e+02 Score=26.15 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 76 VEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 76 ~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
..+..+...+..++.++..++.
T Consensus 96 ~~l~~~l~~~~~~l~~l~~~~~ 117 (372)
T PF04375_consen 96 QQLQQELAQLQQQLAELQQQLA 117 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 287
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.25 E-value=1.3e+02 Score=28.21 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNIL----RVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L----ra~~~~L~~rl~~l~~i~~~ 105 (145)
=+.|++.+...++.+...+..+..++..+...|..+..|+..+ +.++..|...|..++.++..
T Consensus 444 Lq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~ 510 (581)
T KOG0995|consen 444 LQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNT 510 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888888888888888887776655554 55666777777766655543
No 288
>PRK11281 hypothetical protein; Provisional
Probab=55.22 E-value=2.4e+02 Score=28.53 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=48.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 23 ERKRKRMISNRESARRSRMKKQ-----------KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAME 91 (145)
Q Consensus 23 eRr~rR~~sNReSArrSR~RKq-----------~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~ 91 (145)
||.+.++..|+.--..-+.+-+ .....|+.+...|+.+|..++.++........-....=..+++++..
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~ 238 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQR 238 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 4555566666555444444332 33555666666666666666666555444444444444556666677
Q ss_pred HHHHHHHHHHHHHH
Q 032187 92 LTDRLRSLNSVLQI 105 (145)
Q Consensus 92 L~~rl~~l~~i~~~ 105 (145)
+..+++.|++.++.
T Consensus 239 ~~~~~~~lq~~in~ 252 (1113)
T PRK11281 239 LEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777765
No 289
>PRK10722 hypothetical protein; Provisional
Probab=55.12 E-value=1.2e+02 Score=25.54 Aligned_cols=56 Identities=23% Similarity=0.286 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032187 54 INHLESANAMLKQNIDSSVQRYVEM----ESANNILRVQAMELTDRLRSLNSVLQIWAEI 109 (145)
Q Consensus 54 v~~L~~eN~~L~~~~~~l~~~~~~l----~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~ 109 (145)
+-+|-.+.+.+.-.+..-+.+|..| +++-..|+++..+|+.+|..++.=|+.+.+.
T Consensus 146 L~qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdI 205 (247)
T PRK10722 146 LYQLWRDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDI 205 (247)
T ss_pred HHHHHHHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777888888 8899999999999999999988877776444
No 290
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=54.84 E-value=3e+02 Score=29.51 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 32 NRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 32 NReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
-+.=.+..=...++.++.|..+|..++.++..+.........++..+...=..+++++..|..|...|.+.|...
T Consensus 648 ~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~ 722 (1822)
T KOG4674|consen 648 YKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQ 722 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455667788999999999999999999999999999999998888888999999999988888877664
No 291
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=54.76 E-value=70 Score=22.21 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
.+|..++..-+.|+..|..-++.++.++.....-|..|..+...+...
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566666666666666666666666666666666666665555544
No 292
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=54.51 E-value=1.4e+02 Score=25.74 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 032187 38 RSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILR-------VQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 38 rSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr-------a~~~~L~~rl~~l~~i~~~ 105 (145)
.++++-.++--+|-.--..|+...+.+..++..++.++..+.++-+.|- ++++.++.||..|.+|-.+
T Consensus 91 ~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~ 165 (338)
T KOG3647|consen 91 ESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPA 165 (338)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 3344444333333333355666677777777777777777777666664 4445666777766665443
No 293
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=54.30 E-value=68 Score=27.10 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcCCCcCC
Q 032187 74 RYVEMESANNILRVQAMELTDRLRSLNSVLQI----WAEISGINVEI 116 (145)
Q Consensus 74 ~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~----~~~~~g~~~~~ 116 (145)
..+.+.+|-+.|.++...|..+|.+|..-++. +.+++|-.+.+
T Consensus 215 ~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r~~l~~~Dm~G~~~~v 261 (289)
T COG4985 215 FQQHYVAEKSELQKRLAQLQTELDALRAELERQFLYLVDMQGETVSV 261 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhceEEEEccCCCEeec
Confidence 34556778888888888888888877765544 24556643333
No 294
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=54.24 E-value=98 Score=30.08 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 51 VNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 51 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
..+.+-|+.|+..|...+..-..+......||..+..++..|.+|..+|..
T Consensus 703 ~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~ 753 (961)
T KOG4673|consen 703 PIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEV 753 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888777777777777777777777777777777766655543
No 295
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=54.09 E-value=83 Score=29.39 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
.++++...+|..++.........+..+...+..++..|+.|..+......-+..|..++..+
T Consensus 37 ~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l 98 (701)
T PF09763_consen 37 EYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTL 98 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhc
Confidence 45666667777777777777777777778888888888888777776666666666666554
No 296
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=53.92 E-value=83 Score=26.69 Aligned_cols=63 Identities=24% Similarity=0.317 Sum_probs=40.0
Q ss_pred HHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 28 RMISNRESA-RRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 28 R~~sNReSA-rrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
.-++|+|.. +.+|.||+.-.+ ++..|+.... -..++..|++.+..+++||-+..+++..++.+
T Consensus 131 K~IR~~E~sl~p~R~~r~~l~d----~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 131 KSIRNREESLQPSRDRRRKLQD----EIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHHHHH----HHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 346788765 445555553333 3333433222 24567788889999999999999998876654
No 297
>PRK11546 zraP zinc resistance protein; Provisional
Probab=53.86 E-value=1e+02 Score=23.76 Aligned_cols=51 Identities=12% Similarity=0.013 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
..+|..++-.-+.|...|......=.+.+.++..|...|+.++.+++-.+.
T Consensus 63 t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 63 TSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334443333333333333333335677788888888887777665433
No 298
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=53.56 E-value=1.6e+02 Score=26.60 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMES--A--NNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~--E--N~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
..+-+|..+...+..+-+.|..+.+.+.+.+..... + -..|.+++..|.+++..+...+..
T Consensus 29 ~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~ 93 (429)
T COG0172 29 DKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDE 93 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 344455555556666666666666666555542222 2 255777777777776665544444
No 299
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=53.40 E-value=69 Score=21.74 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
++.++.++..+..|-..+..+.+.+.
T Consensus 35 i~~l~~~~~~i~~e~~~ll~~~n~l~ 60 (90)
T PF06103_consen 35 IDTLQEQVDPITKEINDLLHNTNELL 60 (90)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 300
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=53.32 E-value=1.4e+02 Score=25.68 Aligned_cols=52 Identities=13% Similarity=0.273 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSV--------------QRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~--------------~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
-.+.|.+||.++..|..|+++=.-++..+. ..+..|..||..|...+..|..
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek 81 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK 81 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence 346789999999999999988665555554 2344566788888877765543
No 301
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=53.06 E-value=1.2e+02 Score=24.39 Aligned_cols=10 Identities=10% Similarity=0.245 Sum_probs=3.8
Q ss_pred HhHHHHHHHH
Q 032187 31 SNRESARRSR 40 (145)
Q Consensus 31 sNReSArrSR 40 (145)
.+-..+..+.
T Consensus 28 ~~L~~~~~~~ 37 (240)
T PF12795_consen 28 SFLDEIKKQK 37 (240)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 302
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=52.72 E-value=43 Score=21.15 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032187 83 NILRVQAMELTDRLRSLNSVLQIWAEI 109 (145)
Q Consensus 83 ~~Lra~~~~L~~rl~~l~~i~~~~~~~ 109 (145)
..||.++..|..+++.|...+...+.+
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888888888888888777665443
No 303
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=52.70 E-value=59 Score=20.78 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 032187 79 ESANNILRVQAMELTDRL-RSLNSVLQIWAEI 109 (145)
Q Consensus 79 ~~EN~~Lra~~~~L~~rl-~~l~~i~~~~~~~ 109 (145)
..+|..||.++..=+-.. +...+++.+....
T Consensus 5 ~~~veqLr~el~~~RikvS~a~~~l~~y~e~~ 36 (57)
T cd00068 5 KKEVEQLRKELSRERLKVSKAAAELLKYCEQN 36 (57)
T ss_pred HHHHHHHHHHHCCchhhHHHHHHHHHHHHHhc
Confidence 345555555554322222 2466777776554
No 304
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=52.63 E-value=1.1e+02 Score=24.45 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 38 RSRMKKQKQMEDLVNEINHLESANAMLKQNIDS 70 (145)
Q Consensus 38 rSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~ 70 (145)
.-=.+|++++.+-..+...++.+..+|..++..
T Consensus 139 ~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 139 EGLKIRQELIEEAKKKREELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666665555555555555555543
No 305
>PRK02224 chromosome segregation protein; Provisional
Probab=52.41 E-value=2.1e+02 Score=27.09 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDS 70 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~ 70 (145)
.+++.++..++.+...+..++..
T Consensus 373 ~~~~~~l~~~~~~l~~l~~el~e 395 (880)
T PRK02224 373 EEAREAVEDRREEIEELEEEIEE 395 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 306
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=52.37 E-value=34 Score=24.58 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNID------SSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~------~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
+.+++.++..|+.+...+..+-. .++..+..++..|..|.....++..|++.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~eieI~d~eL~~~FeeIa~RFrk 61 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLGEIEISDAELQAAFEEIAARFRK 61 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHHHhc
Confidence 34555555555555444433222 13334556778899999998888888774
No 307
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=51.88 E-value=66 Score=27.88 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 78 MESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 78 l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
+..+...++.++..+...+..++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 27 LEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444544444443
No 308
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=51.85 E-value=1.2e+02 Score=24.18 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 41 MKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSV 102 (145)
Q Consensus 41 ~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i 102 (145)
.-|+.-|+.|+.+|...+.-.......+.....-......--.....++..|+.-|.....-
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~n 124 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQAN 124 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999988888888777777766555555555555555555555555544433
No 309
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=51.84 E-value=47 Score=28.13 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
-.+.|+.++..|+.+|..|+.++..+.
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~ 59 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQ 59 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666555443
No 310
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=51.81 E-value=1.7e+02 Score=28.04 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
-..+-+||.+-..|..|.+++...++.+++.+.....|=..|+-.++.-...++.
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 3567788888888888999988888888877777666666666666555444443
No 311
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.48 E-value=2e+02 Score=27.05 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
.|+..++.+-..+......|..++......+..+..+|..|+.+
T Consensus 280 ~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 280 AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444333
No 312
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=51.44 E-value=60 Score=28.33 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQR---YVEMESANNI 84 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~---~~~l~~EN~~ 84 (145)
-.|..||++|+.++..|+.+ +..+..||..
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~ 92 (337)
T PRK14872 60 LVLETENFLLKERIALLEERLKSYEEANQTPPL 92 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555333 3334455553
No 313
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=51.27 E-value=91 Score=27.39 Aligned_cols=24 Identities=8% Similarity=0.317 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 78 MESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 78 l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
+..+...++.++..+.+.+..|+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 41 IKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444444455555555555443
No 314
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=51.22 E-value=1.2e+02 Score=23.90 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 42 KKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVE-MESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~-l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
.-...+.+|+.+...|+.+...+......+...... ...++.....++..|...-..|.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~ 183 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLK 183 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777776666543 34455555555555555544443
No 315
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=51.09 E-value=77 Score=26.53 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 74 RYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 74 ~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
.+..+..||..||.++.+|..++..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777666444443
No 316
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=50.99 E-value=1.8e+02 Score=25.83 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 74 RYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 74 ~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
....++.+...|..++..|..++
T Consensus 100 ~l~~~e~~~~~l~~q~~~Lq~~~ 122 (390)
T PRK10920 100 ALDQANRQQAALAKQLDELQQKV 122 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 317
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=50.89 E-value=1.3e+02 Score=24.03 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=43.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Q 032187 25 KRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEME---------------SANNILRVQA 89 (145)
Q Consensus 25 r~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~---------------~EN~~Lra~~ 89 (145)
..++.+.+-++-+.+=..-+.++..++.++..|+-++..|..++..+.+....+. -.|-.|...+
T Consensus 73 eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl 152 (201)
T PF13851_consen 73 ELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKL 152 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666677777777777777776666666554443332 2455555555
Q ss_pred HHHHHHHH
Q 032187 90 MELTDRLR 97 (145)
Q Consensus 90 ~~L~~rl~ 97 (145)
..|.+.|.
T Consensus 153 ~~l~~~lE 160 (201)
T PF13851_consen 153 QALSEQLE 160 (201)
T ss_pred HHHHHHHH
Confidence 55555555
No 318
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=50.44 E-value=77 Score=21.46 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
.+....+.....|........+.-..|...+..|-.++..|...+..|
T Consensus 21 ~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 21 KQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555555666666666666666666666777777777776666554
No 319
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=50.34 E-value=26 Score=30.96 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYV 76 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~ 76 (145)
.-.|..+-..|++||..|+.++..|+....
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666666666666666666666654433
No 320
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=50.31 E-value=1.6e+02 Score=25.06 Aligned_cols=49 Identities=22% Similarity=0.181 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 42 KKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
.-+++.+.|..+...+..|+.........|...+..|..+|..|+.+..
T Consensus 47 ~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~ 95 (309)
T PF09728_consen 47 KLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESK 95 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677788888888888888888888888889999999999987654
No 321
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=50.27 E-value=1.5e+02 Score=25.05 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 032187 59 SANAMLKQNIDSSVQRYVEMESANNILR-------VQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 59 ~eN~~L~~~~~~l~~~~~~l~~EN~~Lr-------a~~~~L~~rl~~l~~i~~~ 105 (145)
.-...+..++..++..+..+.++...|. .++.....||.+|..|-..
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPA 222 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPA 222 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 3444555555566666666666655554 4445566777777665443
No 322
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=50.17 E-value=1.4e+02 Score=24.30 Aligned_cols=37 Identities=14% Similarity=0.288 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 36 ARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 36 ArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
+.+.|....++-++|+.++..|+.+.+.++.++..+.
T Consensus 107 ~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 107 RKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444555555555555555555554444443
No 323
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=49.87 E-value=5.4 Score=33.09 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNIL 85 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 85 (145)
-+..|++...++.+|+.-...|..++..|++....|.+||+.|
T Consensus 120 dKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 120 DKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -------------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777666666655555566666665
No 324
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.69 E-value=1.8e+02 Score=27.65 Aligned_cols=60 Identities=18% Similarity=0.124 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
++.|..+|..|..+..+........-+....+..|...|+.++++|...+..+..-+...
T Consensus 10 ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqt 69 (772)
T KOG0999|consen 10 VEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQT 69 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444444444455666788888888888777666555444443
No 325
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=49.61 E-value=38 Score=23.34 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSS 71 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l 71 (145)
++.++.+...|+.||..|.-+...+
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666666666666665555544
No 326
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=49.54 E-value=2e+02 Score=25.89 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 032187 37 RRSRMKKQKQMEDLVNEINH--LESANAMLKQNIDSSVQRYVEMESANNILRVQA-------MELTDRLRSLNSVLQIW 106 (145)
Q Consensus 37 rrSR~RKq~~l~eLe~~v~~--L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~-------~~L~~rl~~l~~i~~~~ 106 (145)
.-.|.|=-..+.|-...|.. .+.|.+.|...+..+++.|..+..-|..|..+. .+|..-|+.+|.+|+..
T Consensus 320 ~~vr~~ltaemAd~~~~ik~llvrAEDaRl~~d~~~m~k~y~~l~~~n~~l~~~~~~R~~N~~~l~~~lk~vn~~iq~a 398 (431)
T PF14782_consen 320 NEVRQRLTAEMADHSNLIKSLLVRAEDARLMGDMKNMRKYYAELYDLNRDLINEYKIRCNNHEELLSSLKEVNQIIQKA 398 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34455555666666655544 478999999999999999999999999997765 48888899999888765
No 327
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=49.29 E-value=1.5e+02 Score=27.87 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
+..|..++..|+.++..|..++..|.
T Consensus 505 ~~~L~~~~~~Le~e~~~L~~~~~~Le 530 (722)
T PF05557_consen 505 LNELQKEIEELERENERLRQELEELE 530 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555554444
No 328
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.26 E-value=2.3e+02 Score=28.65 Aligned_cols=67 Identities=22% Similarity=0.294 Sum_probs=46.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 29 MISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 29 ~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
+.++=-+-...+...+..+++++.+....-.+...|...++.+..+.+.+.++|..++.+..++.++
T Consensus 402 l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~ 468 (1200)
T KOG0964|consen 402 LKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDK 468 (1200)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455666677777777777777777777777777777777777777777777777666543
No 329
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=49.23 E-value=1.4e+02 Score=27.35 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
-.+|++-|...+.+....-..+......+.++...+..+=..|.-++..|..+-+.|...+..
T Consensus 430 SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 430 SPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888888888888888888888888888888888888887777766655
No 330
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=49.08 E-value=1.1e+02 Score=23.13 Aligned_cols=45 Identities=27% Similarity=0.312 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA 89 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~ 89 (145)
+-++.....+..|+.||.-|+..+..+.+.|..=...=..|+.++
T Consensus 78 Kvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL 122 (126)
T PF13118_consen 78 KVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQL 122 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555556666777777777766666666655544444444444
No 331
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=49.07 E-value=3e+02 Score=27.91 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=49.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
|..+-.+.||+---.--+++-.-++++..+.-.|+.++..|..++..|.+.+..+...+..|.-.
T Consensus 373 ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~ 437 (1195)
T KOG4643|consen 373 RALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDL 437 (1195)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888777777888888888888888888888888888888877777666555555433
No 332
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=49.05 E-value=21 Score=22.66 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLK 65 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~ 65 (145)
-++.+||.+|..|++-|..|-
T Consensus 18 vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHH
Confidence 356778888888887777653
No 333
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=48.96 E-value=39 Score=27.28 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 62 AMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 62 ~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
.++....+.|+..+..+..+|..|..++.+|...+..+...++.
T Consensus 108 kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 108 KQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhcc
Confidence 34555556666667777777777777777777777766555544
No 334
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=48.73 E-value=51 Score=24.27 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQR 74 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~ 74 (145)
.+..+|+.||.-|+-+++.|-..
T Consensus 79 kk~~~LeEENNlLklKievLLDM 101 (108)
T cd07429 79 KKNQQLEEENNLLKLKIEVLLDM 101 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777765433
No 335
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=48.71 E-value=2e+02 Score=26.72 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
.++++.++..|..|..-...+..++.........+..+=..|+.+...+..+-+-|..++..
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~ 105 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLER 105 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788888888888888888888888888888888888888888777777777666655
No 336
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=48.34 E-value=84 Score=21.29 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANN--------ILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~--------~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
.++.+..+|..|...-..|...+..+...+..+..-+. .....+..++.++..++..+..++
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk 84 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLK 84 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888777788877777777665544111 134455566777777777666654
No 337
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=48.25 E-value=95 Score=21.88 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSS---VQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l---~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
..++.+|.++++.+.....+-.++... .+....++.|-..|+..+.....+|..|.
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 356666666666665555544443321 13455666777777777776666666654
No 338
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=48.06 E-value=63 Score=30.36 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcC
Q 032187 52 NEINHLESANAMLKQNIDSSVQR------------YVEMESANNILRVQAMELTDRLRSLNSVLQI--------WAEISG 111 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~------------~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~--------~~~~~g 111 (145)
..+..|+.||..|...+..+... +.....|-..|++++..+..+...|.+|+.. +....|
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llG 645 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLG 645 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35577888888888888544311 1223446678899999999888888877654 344567
Q ss_pred CCcCC
Q 032187 112 INVEI 116 (145)
Q Consensus 112 ~~~~~ 116 (145)
.-+|+
T Consensus 646 yki~~ 650 (722)
T PF05557_consen 646 YKIDF 650 (722)
T ss_dssp EEEEE
T ss_pred ceeee
Confidence 65664
No 339
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=47.97 E-value=1.1e+02 Score=22.49 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 26 RKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMEL 92 (145)
Q Consensus 26 ~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L 92 (145)
+......+.....-+.....--..|...-.....+-..|..++..+..++..|..+|..|-.++..+
T Consensus 65 r~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 65 REELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 340
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.83 E-value=80 Score=25.88 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 42 KKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
-|+..++-+|.++..|+.--..+..++..|+.+-......|..-...+.++.
T Consensus 131 AKkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~fS 182 (210)
T KOG1691|consen 131 AKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWFS 182 (210)
T ss_pred HhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 3788899999999999999999999999999888888888887777777664
No 341
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=47.77 E-value=1.7e+02 Score=24.64 Aligned_cols=45 Identities=7% Similarity=0.201 Sum_probs=31.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 28 RMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 28 R~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
++..-+..=+.-..+-..++..|+.+|..|.........++..|.
T Consensus 64 ~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 64 QLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445566677888888888888888888888877766
No 342
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=47.76 E-value=1.2e+02 Score=22.84 Aligned_cols=14 Identities=14% Similarity=-0.045 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 032187 70 SSVQRYVEMESANN 83 (145)
Q Consensus 70 ~l~~~~~~l~~EN~ 83 (145)
.|...+...+....
T Consensus 45 lLq~e~~~~e~~le 58 (160)
T PF13094_consen 45 LLQEEIEKEEAALE 58 (160)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 343
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=47.55 E-value=1.3e+02 Score=23.07 Aligned_cols=57 Identities=14% Similarity=0.235 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
.+|..+......+-.+.......+..+...+..+...=..|...+..|-..-..|..
T Consensus 7 ~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~ 63 (157)
T PF04136_consen 7 DYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEE 63 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666667777777777777777777777777666655544443333
No 344
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=47.48 E-value=1.3e+02 Score=27.94 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNI----LRVQAMELTDRLRSLN 100 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~----Lra~~~~L~~rl~~l~ 100 (145)
+++++.++.-++.|..++..+..++......|.-...+|.. -+.+++.|...|..||
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ln 546 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN 546 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888889999999999999888888888766555543 3666777777777665
No 345
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=47.31 E-value=1.4e+02 Score=23.70 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANN 83 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~ 83 (145)
+..|+.++..+......|...+..++.++..+...-.
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555444444444333
No 346
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=47.23 E-value=53 Score=24.50 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 64 LKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 64 L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
.+.+++.|++++..|+..|+.|+++-.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~ 91 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENS 91 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554444433
No 347
>PRK10698 phage shock protein PspA; Provisional
Probab=47.13 E-value=1.5e+02 Score=23.90 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 36 ARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 36 ArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
||..=.+|+.+. .++..|+.+.......+..|...+..|...=..++.+-..|..|.+.
T Consensus 87 Ar~AL~~K~~~~----~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 87 ARAALIEKQKLT----DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444432 33334444444444444444444444444444444444444444443
No 348
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=47.12 E-value=1.4e+02 Score=25.45 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=43.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 032187 26 RKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQ--------------RYVEMESANNILRVQAME 91 (145)
Q Consensus 26 ~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~--------------~~~~l~~EN~~Lra~~~~ 91 (145)
......+-+.++..=..++..+.+++.++..|+.+......+...+.. .+..|..|+..-...+..
T Consensus 223 l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~ 302 (344)
T PF12777_consen 223 LEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEE 302 (344)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHH
Confidence 334445555555555667777777777777777766554444443332 233444566666666667
Q ss_pred HHHHHHHH
Q 032187 92 LTDRLRSL 99 (145)
Q Consensus 92 L~~rl~~l 99 (145)
|..++..|
T Consensus 303 l~~~~~~l 310 (344)
T PF12777_consen 303 LEEQLKNL 310 (344)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 77776653
No 349
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=47.11 E-value=1.5e+02 Score=27.36 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSV------QRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~------~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
++.||.++..|+.+...|..++..-. ..+..+..|=..++.++.++..+-..|.
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877764321 1334444444555555555555544443
No 350
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=47.07 E-value=78 Score=23.02 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 63 MLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 63 ~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
.+..++.....++..+..+|..|.+++..|.+-
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333444444455555666666666666666665
No 351
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=46.87 E-value=1.3e+02 Score=23.00 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 71 SVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 71 l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
++++.+.+..++..++.++......+..+.+-+..
T Consensus 82 ~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~ 116 (177)
T PF13870_consen 82 VKEKLHFLSEELERLKQELKDREEELAKLREELYR 116 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788888888887777666666555444
No 352
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=46.79 E-value=24 Score=21.87 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=9.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 26 RKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNI 68 (145)
Q Consensus 26 ~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~ 68 (145)
.++...|++=|+..-... ..+.+|+.+++.|..||-.|+..+
T Consensus 3 ~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 344555665555443332 346666666666666666666543
No 353
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=46.41 E-value=1.6e+02 Score=23.91 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=33.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 24 RKRKRMISNRESARRSRMKKQK----QMEDLVNEINHLESANAMLKQNIDSSVQRYVEM 78 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq~----~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l 78 (145)
++.||-...+.++=.-+-+=.+ ++...-.++..|+..|+.|...+..|...+.-+
T Consensus 23 ~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFL 81 (195)
T PF10226_consen 23 RRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFL 81 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4566777776666443332222 344444567778888888888777777554433
No 354
>PHA03011 hypothetical protein; Provisional
Probab=46.21 E-value=1.2e+02 Score=22.43 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
.+++|..+-..|-.|-.-+..++..+..-.+.-..|=.-|++++..|...
T Consensus 65 ~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~n 114 (120)
T PHA03011 65 ILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKEN 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555444444443344444455555544443
No 355
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=46.18 E-value=1.1e+02 Score=24.81 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032187 64 LKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISG 111 (145)
Q Consensus 64 L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~~g 111 (145)
...++..|...+..+..|+..|+.+..+|..-...+..+..++....|
T Consensus 123 aL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 123 ALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555555555566666666666666655555555555555555
No 356
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=46.12 E-value=56 Score=24.35 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAML 64 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L 64 (145)
+.+++|+.++..|+.+.+.+
T Consensus 112 ~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544443
No 357
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=46.10 E-value=93 Score=27.93 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
+++.+|+.++..++.....+.. ...-..+..+=..|..++..|.+++..|..++..+.
T Consensus 170 ~Rl~~L~~qi~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~ 227 (475)
T PF10359_consen 170 ERLDELEEQIEKHEEKLGELEL-----NPDDPELKSDIEELERHISSLKERIEFLENMLEDLE 227 (475)
T ss_pred HHHHHHHHHHHHHHHhhhcccc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677776666665555432 111223334444555555666666666666666553
No 358
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=46.05 E-value=2.4e+02 Score=25.86 Aligned_cols=66 Identities=14% Similarity=0.318 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCCCCCcC
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPDPL 123 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~~g~~~~~~~~~d~~ 123 (145)
+...+..+......+..+...+...+..+..+-..-|..+..+...|..+..-+.. ..+|++|+.+
T Consensus 377 i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek--------~nLPGlp~~y 442 (560)
T PF06160_consen 377 IQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK--------SNLPGLPEDY 442 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCCCCHHH
Confidence 33333444444444444444444444444444444444444444444433333322 2566776543
No 359
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=45.78 E-value=1.1e+02 Score=22.80 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 83 NILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 83 ~~Lra~~~~L~~rl~~l~~i~ 103 (145)
..|..+-..+..+|..|.+.|
T Consensus 87 ~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 87 KTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443
No 360
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=45.74 E-value=1.8e+02 Score=24.24 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNI 68 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~ 68 (145)
+..|..++..++..-..|..++
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el 112 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 361
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=45.67 E-value=92 Score=20.98 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
|.+=..++++|..|=..|....-....-+..|...|..+-.++..|..++..+..-+..+
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456777888888888777777777777777777777777777777777665544443
No 362
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=45.63 E-value=1.4e+02 Score=22.96 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNIL---RVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L---ra~~~~L~~rl~~l~~i~~~ 105 (145)
+-++.|+.++..|+.+-..+...+......-+ .+||+.- |.+...+..|+..|...|..
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GD--lsENaey~aak~~q~~~e~RI~~L~~~L~~ 72 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGD--HGDQAEAIQRADELARLDDRINELDRRLRT 72 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC--cchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567778888887766666666544332222 3455544 33444566666666666654
No 363
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=45.58 E-value=1.1e+02 Score=22.02 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNIDSSVQRYVEMESANNIL 85 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 85 (145)
.+..|+.++..+..++..+...+.....+...|
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333333333333333
No 364
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=45.57 E-value=1.7e+02 Score=23.87 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
+..++.++.++..|..+-..|..+..........+...=.........|...+..+.
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~ 100 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQ 100 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777666666666655555556656555555443
No 365
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=45.54 E-value=1.4e+02 Score=23.05 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 80 SANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 80 ~EN~~Lra~~~~L~~rl~~l~ 100 (145)
.++..+..++.+|.+.|....
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~ 174 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKE 174 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 444445555555555544433
No 366
>PRK14143 heat shock protein GrpE; Provisional
Probab=45.52 E-value=1.7e+02 Score=24.13 Aligned_cols=17 Identities=6% Similarity=0.149 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLK 65 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~ 65 (145)
+|..+.-.+..+...++
T Consensus 85 elkd~~lR~~AdfeN~R 101 (238)
T PRK14143 85 ELNSQYMRIAADFDNFR 101 (238)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 367
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=45.39 E-value=1.2e+02 Score=22.09 Aligned_cols=42 Identities=7% Similarity=0.082 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 65 KQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 65 ~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
...+..+.........||..|.++...|.+.+..|++=.+++
T Consensus 49 ~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i 90 (117)
T COG2919 49 AADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYI 90 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 334444555566667777777777777777777766543333
No 368
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=45.23 E-value=1.4e+02 Score=27.69 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLK 65 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~ 65 (145)
.+++|+.++..+..+-..+.
T Consensus 210 ~~~~le~el~~l~~~~e~l~ 229 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLA 229 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333
No 369
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=44.83 E-value=62 Score=25.94 Aligned_cols=30 Identities=17% Similarity=0.353 Sum_probs=15.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLES 59 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~ 59 (145)
.|.+|...++ -...+.++.+|..+|..|+.
T Consensus 91 ~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~ 120 (181)
T KOG3335|consen 91 WRQARKERKK------EEKRKQEIMELRLKVEKLEN 120 (181)
T ss_pred HHhhhcchhh------HHHHHHHHHHHHHHHHHHHH
Confidence 3445554444 23344556666666655554
No 370
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=44.28 E-value=1.3e+02 Score=26.36 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 51 VNEINHLESANAMLKQNIDSS 71 (145)
Q Consensus 51 e~~v~~L~~eN~~L~~~~~~l 71 (145)
+.++..|+.++..+..++..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~ 48 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEEQKNL 48 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 371
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=44.21 E-value=1.8e+02 Score=23.89 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 51 VNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 51 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
|.-+.+++.+.......+..+...|..+..+=..+|.+
T Consensus 66 E~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 66 ENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444333
No 372
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=44.21 E-value=2.1e+02 Score=24.78 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 34 ESARRSRMKKQKQMEDLVNEINHLESANAMLK--------------QNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 34 eSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~--------------~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
+..|.-|..=+-.++.|..+...|+.....+. .....+.+.+.....+|..|..++..|+.+|..+
T Consensus 19 e~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 19 EKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555666655555555554444 1223344445555667777777777777766543
No 373
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=43.93 E-value=2.8e+02 Score=28.08 Aligned_cols=54 Identities=20% Similarity=0.171 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 54 INHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 54 v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
+..+-..|.+|..++...+++...+..+|...+.++..++..+..+.+-++.++
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444446689999999999999999999999999999999988888888777763
No 374
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=43.83 E-value=1.6e+02 Score=25.67 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYV------EMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~------~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
+-..+.+|+.+++.+.+..+.+...+..|..++. .++.+.. |+.++..|-+-+...+.++
T Consensus 166 ~lPD~seLe~~~s~~sk~Lq~lqq~v~~Lask~~y~pd~~~~e~~~~-Lr~~L~tflq~~~~F~~~Y 231 (325)
T PF06694_consen 166 PLPDVSELEKKASELSKQLQSLQQQVAELASKHPYNPDEEYVEKESQ-LRLELETFLQTAAGFNHCY 231 (325)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777777777666665442 2233333 6666666655555555544
No 375
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=43.81 E-value=98 Score=27.83 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
+..+++.+-..|+..|+.|..++..|+
T Consensus 291 ~~~E~~~rqk~le~~n~~L~~rieeLk 317 (411)
T KOG1318|consen 291 RARELENRQKKLESTNQELALRIEELK 317 (411)
T ss_pred HHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 344555555555555555555555443
No 376
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=43.75 E-value=3.4e+02 Score=27.04 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 33 RESARRSRMKKQKQMEDLVNEINHLE 58 (145)
Q Consensus 33 ReSArrSR~RKq~~l~eLe~~v~~L~ 58 (145)
-++++.+-....+...+|..+|..+.
T Consensus 454 le~~~~s~~~~~~~~~~L~d~le~~~ 479 (980)
T KOG0980|consen 454 LESAEQSIDDVEEENTNLNDQLEELQ 479 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333333333333333
No 377
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=43.74 E-value=56 Score=27.67 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 71 SVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 71 l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
+..++..+..||..|+.++.++..++...+.++..+
T Consensus 37 l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 37 LEDQFDSLREENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666777777777777777776666655553
No 378
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=43.40 E-value=1.7e+02 Score=23.50 Aligned_cols=6 Identities=17% Similarity=0.556 Sum_probs=2.2
Q ss_pred HHHHHH
Q 032187 49 DLVNEI 54 (145)
Q Consensus 49 eLe~~v 54 (145)
.|+.++
T Consensus 96 ~lE~~l 101 (237)
T PF00261_consen 96 ELEQQL 101 (237)
T ss_dssp HCHHHH
T ss_pred HHHHHH
Confidence 333333
No 379
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.05 E-value=3.7e+02 Score=27.23 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 34 ESARRSRMKKQKQMEDLVNEIN 55 (145)
Q Consensus 34 eSArrSR~RKq~~l~eLe~~v~ 55 (145)
++.+....+++..+..|+.++.
T Consensus 846 e~l~~e~e~~~~eI~~Lq~ki~ 867 (1311)
T TIGR00606 846 ELNRKLIQDQQEQIQHLKSKTN 867 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333
No 380
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=42.47 E-value=2.7e+02 Score=25.45 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 032187 41 MKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM-ELTDRL 96 (145)
Q Consensus 41 ~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~-~L~~rl 96 (145)
..|+.+.+.+...+..+......+..++..+..++..+...-..|+.+++ +|..++
T Consensus 442 ~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~y 498 (507)
T PF05600_consen 442 QQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADISKRY 498 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556666777777777777777777777777777777777777777775 355553
No 381
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=42.00 E-value=2.3e+02 Score=24.43 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
-|.++...|..||.+|-.+.. ..+++.|+.|=+.=+.+.++|......|++.+..+
T Consensus 214 ~LMAKCR~L~qENeElG~q~s--~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eL 269 (330)
T KOG2991|consen 214 MLMAKCRTLQQENEELGHQAS--EGRIAELEIELAMQKSQSEELKSSQEELYDFMEEL 269 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhhh--cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Confidence 478899999999999987754 35677777776666666666666666666655554
No 382
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=41.80 E-value=23 Score=34.61 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEI 109 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~ 109 (145)
+++.+++.+...|+.|...+.. .+.+ +++..++..|+.++++...|-..++..+.-|+.+...
T Consensus 829 kql~eykvey~vLq~El~~~~~-~~~~-~~~~~lE~~~s~~~~q~~~ll~qlq~~~~~iq~l~~~ 891 (948)
T KOG4436|consen 829 KQLAEYKVEYHVLQEELTTSSH-LEDL-NRIAKLETTNSSLQAQNTDLLEQLQVAELTIQTLERY 891 (948)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-hhhc-ccccccccchhhhHhhhhhhhhhhccccchhhHHHHH
Confidence 4555566666655555555544 3322 3478889999999999999988888776656555433
No 383
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=41.79 E-value=1e+02 Score=20.34 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 71 SVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 71 l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
.......++.-+..+..++..+.++|..+.+....
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666677777777776665544
No 384
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=41.78 E-value=1.7e+02 Score=23.06 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEME--SANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~--~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
+...+..|++++.++......+.+.+..-. +--..|...+.++++++.-+..-+
T Consensus 46 itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i 101 (165)
T PF09602_consen 46 ITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKI 101 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555777777777777777776666643333 334455566666666666554333
No 385
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=41.72 E-value=2.1e+02 Score=26.33 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLES-----------ANAMLKQNIDSSV------------------------QRYVEMESANNILRVQ 88 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~-----------eN~~L~~~~~~l~------------------------~~~~~l~~EN~~Lra~ 88 (145)
...+..|-++++.|+. ||..|..++..+- ..+..++.||..|+.+
T Consensus 384 ~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kq 463 (488)
T PF06548_consen 384 SRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQ 463 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666665555 7777777766544 2334556788888888
Q ss_pred HHHHHHHHH
Q 032187 89 AMELTDRLR 97 (145)
Q Consensus 89 ~~~L~~rl~ 97 (145)
+..|..+..
T Consensus 464 iekLK~kh~ 472 (488)
T PF06548_consen 464 IEKLKRKHK 472 (488)
T ss_pred HHHHHHHHH
Confidence 888887655
No 386
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=41.60 E-value=2.3e+02 Score=24.49 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 38 RSRMKKQKQMEDLVN---EINHLESAN----AMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 38 rSR~RKq~~l~eLe~---~v~~L~~eN----~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
.+..+...|+++.+. +.+.|+... ..|...+.....++..|.+||..|..++.
T Consensus 21 q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe 80 (305)
T PF14915_consen 21 QNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLE 80 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHH
Confidence 345667778887763 444444433 23555555566777888899999988874
No 387
>PF14645 Chibby: Chibby family
Probab=41.58 E-value=1.4e+02 Score=21.93 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 032187 78 MESANNILRVQAMELT 93 (145)
Q Consensus 78 l~~EN~~Lra~~~~L~ 93 (145)
|+.||+.|+-++.-|-
T Consensus 83 L~EENN~Lklk~elLl 98 (116)
T PF14645_consen 83 LEEENNLLKLKIELLL 98 (116)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 388
>PRK02224 chromosome segregation protein; Provisional
Probab=41.49 E-value=3.2e+02 Score=25.95 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESA 60 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~e 60 (145)
+..+.+|..++..++..
T Consensus 508 ~~~l~~l~~~~~~l~~~ 524 (880)
T PRK02224 508 EDRIERLEERREDLEEL 524 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 389
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=41.47 E-value=1.2e+02 Score=21.25 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
....-|+..|.....+...+......+...-..|..+..+|...++.+..
T Consensus 21 ~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~ 70 (99)
T PF10046_consen 21 EDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQ 70 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666655555555555555555555555444444444433
No 390
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=41.27 E-value=1.1e+02 Score=24.49 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 032187 56 HLESANAMLKQNIDSSVQRYVEMES----ANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 56 ~L~~eN~~L~~~~~~l~~~~~~l~~----EN~~Lra~~~~L~~rl~~l 99 (145)
+|-.+++.+.-.+..-+.+|..+.. +=..||++-..|+..|...
T Consensus 102 QlWRe~Q~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T 149 (179)
T PF13942_consen 102 QLWREQQVLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTT 149 (179)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555543 2234455555555444433
No 391
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=41.24 E-value=2.7e+02 Score=25.47 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 41 MKKQKQMEDLVNEINH--------------LESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 41 ~RKq~~l~eLe~~v~~--------------L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
.=|.+|-++++.++.. ...+.+.+..++..|.++|..---||..|...+++-+
T Consensus 389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaer 455 (593)
T KOG4807|consen 389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAER 455 (593)
T ss_pred HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888876642 3345667788888899999888888888877665433
No 392
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.05 E-value=4e+02 Score=27.01 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 40 RMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 40 R~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
|..-...+++|..++..+..+...+..++..+......+..+...++.+
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISS 931 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3334455566666666666666666666666666666666555555443
No 393
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=40.88 E-value=15 Score=26.33 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 71 SVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 71 l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
+...+..+..+|..|+.++.+|..+|..+
T Consensus 30 l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 30 LAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33444555556666666655555554444
No 394
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=40.86 E-value=1.3e+02 Score=21.22 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
.+...+.+|..-...|..+...+..++..|...|...|.+..
T Consensus 30 ~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~ 71 (83)
T PF03670_consen 30 AINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQ 71 (83)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444455566665555443
No 395
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=40.83 E-value=1.5e+02 Score=25.57 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANN 83 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~ 83 (145)
++.++.+|+..+..|..++..++..+..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (389)
T PRK03992 13 LEEQIRQLELKLRDLEAENEKLERELERLKSELE 46 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 396
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=40.66 E-value=1.5e+02 Score=22.06 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 82 NNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 82 N~~Lra~~~~L~~rl~~l~~i~ 103 (145)
|..+...+.+|+..|......+
T Consensus 92 ~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 92 NEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554444433
No 397
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=40.61 E-value=4e+02 Score=26.90 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=51.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 032187 11 GSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNID-----SSVQRYVEMESANNIL 85 (145)
Q Consensus 11 gs~~~~~~~~~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~-----~l~~~~~~l~~EN~~L 85 (145)
|.++++.....|-..+-|=+.||.--+-++++..++-++.+.+-.+|....+.|+.=+. .+.+.-..++.|-..|
T Consensus 1015 ~~e~~~~~~~~d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kEl 1094 (1189)
T KOG1265|consen 1015 GGESTPAALNSDNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKEL 1094 (1189)
T ss_pred CCCCchhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344556667788999988999999988888888888888877776654322 2233333445555555
Q ss_pred HHHHH
Q 032187 86 RVQAM 90 (145)
Q Consensus 86 ra~~~ 90 (145)
+..+.
T Consensus 1095 k~~l~ 1099 (1189)
T KOG1265|consen 1095 KKKLD 1099 (1189)
T ss_pred HHHHH
Confidence 55543
No 398
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=40.57 E-value=1.3e+02 Score=22.38 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 85 LRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 85 Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
++.+..+|.+|+-.+-..++.+
T Consensus 77 ~r~r~~~L~hR~l~v~~~~eil 98 (141)
T PF13874_consen 77 ARRRHQELSHRLLRVLRKQEIL 98 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444443
No 399
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.54 E-value=3e+02 Score=25.47 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 81 ANNILRVQAMELTDRLRSLNSV 102 (145)
Q Consensus 81 EN~~Lra~~~~L~~rl~~l~~i 102 (145)
+-.+|++++..|..++..=|++
T Consensus 412 ~EE~Lr~Kldtll~~ln~Pnq~ 433 (508)
T KOG3091|consen 412 DEEELRAKLDTLLAQLNAPNQL 433 (508)
T ss_pred cHHHHHHHHHHHHHHhcChHHH
Confidence 3344444444444444443333
No 400
>PF14282 FlxA: FlxA-like protein
Probab=40.51 E-value=1.3e+02 Score=21.40 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQ 66 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~ 66 (145)
.+..|..++..|..+...|..
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344555555555555544444
No 401
>PF15058 Speriolin_N: Speriolin N terminus
Probab=40.37 E-value=38 Score=27.53 Aligned_cols=27 Identities=7% Similarity=0.074 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 68 IDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 68 ~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
++-+++++..++.||..||.++.-|++
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLirE 33 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIRE 33 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445666777889999999999876654
No 402
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.33 E-value=2.1e+02 Score=23.66 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 032187 42 KKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT-DRLRSLNS 101 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~-~rl~~l~~ 101 (145)
-+|..++.++.-+.....+...+..++..+..+.... |..+++++.... .+.+.+..
T Consensus 160 ~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~~~k~~D~k~ 217 (243)
T cd07666 160 QIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWKQNMQTDLRS 217 (243)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455555555555444444 777888887443 33334443
No 403
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=40.29 E-value=3.2e+02 Score=25.60 Aligned_cols=65 Identities=6% Similarity=0.135 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 41 MKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 41 ~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
.|-...+.+.+..+...+.+-..|--.+.....++...-.+|..+++++..+..+++.+.+++..
T Consensus 45 ~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~~ 109 (604)
T KOG3564|consen 45 KRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDMLKC 109 (604)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 33444555555666666667777777777777888888899999999999999999999888754
No 404
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=40.18 E-value=1.1e+02 Score=24.21 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 67 NIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 67 ~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
++..+.+....+..+|..|+.+..-+..-++.|-.|++..
T Consensus 112 e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~ra 151 (170)
T PRK13923 112 QIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRA 151 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555555555555555555555543
No 405
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=40.17 E-value=66 Score=25.96 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
.+|+.+-..|+..+..+......+..|+..|++++..+....+.
T Consensus 108 kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 108 KQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhcc
Confidence 57788888888888888888889999999999999887777665
No 406
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=40.13 E-value=89 Score=22.48 Aligned_cols=26 Identities=12% Similarity=-0.083 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 79 ESANNILRVQAMELTDRLRSLNSVLQ 104 (145)
Q Consensus 79 ~~EN~~Lra~~~~L~~rl~~l~~i~~ 104 (145)
+.||..|+.++.+|.-....|...+.
T Consensus 77 ~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 77 MKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 407
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=39.88 E-value=1.7e+02 Score=22.44 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRV 87 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra 87 (145)
-|..++..|......|...+..+.+.+..+..++..+-.
T Consensus 98 ~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 98 FLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455555555554433
No 408
>PRK15396 murein lipoprotein; Provisional
Probab=39.79 E-value=1.3e+02 Score=20.86 Aligned_cols=32 Identities=9% Similarity=0.284 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVE 77 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~ 77 (145)
.++.|..+|..|..+..++...+..++.....
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~ 57 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA 57 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655555555555544443
No 409
>PRK14148 heat shock protein GrpE; Provisional
Probab=39.75 E-value=2e+02 Score=23.11 Aligned_cols=35 Identities=9% Similarity=0.149 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILR 86 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr 86 (145)
.++..|+.+...|..++..++.+|..+.+|..-+|
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~r 74 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIR 74 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455544444333333
No 410
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.44 E-value=4.3e+02 Score=26.91 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=47.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 29 MISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 29 ~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
.+.-...-..|++|.......|...+..+...-..+......+...+.....+-..+..++.++.++|
T Consensus 407 lE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql 474 (1141)
T KOG0018|consen 407 LEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQL 474 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 33444445667777777888888888888888888877777777777777766666666666555544
No 411
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=39.21 E-value=98 Score=20.75 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNID 69 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~ 69 (145)
+.+|+.++.-|+.|...|..+..
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655543
No 412
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=39.17 E-value=1.6e+02 Score=22.01 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
+.+.+++.|+.+-+.|...=. +++....+....+.+++.++.+....+...+..+.
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~---~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~ 79 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEE---ARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLK 79 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445555555555555544322 23444444445555555555555555555555543
No 413
>PRK11239 hypothetical protein; Provisional
Probab=39.09 E-value=67 Score=26.44 Aligned_cols=18 Identities=39% Similarity=0.372 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQN 67 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~ 67 (145)
|+.+|..|+.|...|+..
T Consensus 188 Le~rv~~Le~eva~L~~~ 205 (215)
T PRK11239 188 LQARVEALEIEVAELKQR 205 (215)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444433333333333
No 414
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=39.08 E-value=2e+02 Score=23.08 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
=-...+.++.++..|.........+...+...+..|+.++..|...+.....+...+..=|
T Consensus 167 ~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 167 ASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666666666666666666666777777777776666666666555444
No 415
>COG5570 Uncharacterized small protein [Function unknown]
Probab=38.76 E-value=70 Score=20.89 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAML 64 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L 64 (145)
.|+.+|+.+-..|+.|.++-
T Consensus 5 shl~eL~kkHg~le~ei~ea 24 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEA 24 (57)
T ss_pred HHHHHHHHhhchHHHHHHHH
Confidence 36667777766666666553
No 416
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=38.75 E-value=1.7e+02 Score=21.99 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 58 ESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 58 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
..-..+|..+|+.+..+++....=....+.++.+++.-+..++.-+..++
T Consensus 60 ~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 60 SSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444555666666666666666666666666666666666665555543
No 417
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=38.46 E-value=1.7e+02 Score=22.00 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSS 71 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l 71 (145)
|..-+.+|+.++..+..|-++|..+...+
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~ 46 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRM 46 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665555443
No 418
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=38.29 E-value=2.3e+02 Score=25.58 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
..+..|+.++..++.+...|...+..-..++..+..+=..|++++.+++.++.
T Consensus 286 ~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 286 QLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555444444444332111123445555666666666666666663
No 419
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.24 E-value=1.7e+02 Score=22.00 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=37.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 28 RMISNRESARRSRMKKQKQMEDLVN-------EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 28 R~~sNReSArrSR~RKq~~l~eLe~-------~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
++...-+.+...-.+|++.++.|.. +|..|+.+...+...+..+...+..+ +..++.++..+..
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~~ 184 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFHE 184 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4445556666666666666666642 56666666666666666655544444 3455555554443
No 420
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.09 E-value=2.9e+02 Score=24.50 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
...+.+++..+...+.....+..+...++.....++.++..+..++.+|..+|.
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~ 389 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444443333
No 421
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=37.99 E-value=2.3e+02 Score=23.40 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 59 SANAMLKQNIDSSV-QRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 59 ~eN~~L~~~~~~l~-~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
..-..++.++..+. ..++.+.+||..|+-+++.+...|.
T Consensus 101 ~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 101 VDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555444 4578888888888888888776665
No 422
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=37.83 E-value=2e+02 Score=23.98 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 63 MLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 63 ~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
..+.++..|.++|..+..+=..|.+++++-.++|..++...
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~ 217 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSS 217 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 67888889999999999999999999999999998886543
No 423
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=37.80 E-value=1.3e+02 Score=27.45 Aligned_cols=34 Identities=29% Similarity=0.247 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 68 IDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 68 ~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
+..+..++....+||..|..++.+|...-++|-.
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~ 307 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELSNRSLLA 307 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHH
Confidence 4556667777888999999998877755444433
No 424
>PRK11281 hypothetical protein; Provisional
Probab=37.79 E-value=2e+02 Score=29.01 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 54 INHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 54 v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
+..+-..|..|...+...+++...+..+|...+.++..++.-++.+++-++.+
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l 332 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVL 332 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345668888888888888888888899888888888888888777766665
No 425
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.76 E-value=98 Score=26.09 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
+.+|+.++..|+.+..+|.. +..+...|.....+..+...+++.+.
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~--------~~~~q~q~~~~~~~qe~~~~~~~~~~ 103 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG--------IQELQYQNNQNVERQEENEARLDSLE 103 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh--------HHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 55566666655555555543 44455566555555555555555553
No 426
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.54 E-value=3.3e+02 Score=25.01 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032187 75 YVEMESANNILRVQAMEL 92 (145)
Q Consensus 75 ~~~l~~EN~~Lra~~~~L 92 (145)
.+.++.||..||..++.|
T Consensus 306 ~qqleeentelRs~~arl 323 (502)
T KOG0982|consen 306 DQQLEEENTELRSLIARL 323 (502)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666655533
No 427
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=37.36 E-value=1.1e+02 Score=19.59 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMES----ANNILRVQAMELTDRLRSLNSVLQ 104 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~----EN~~Lra~~~~L~~rl~~l~~i~~ 104 (145)
.+..+...+..+.......+..+......+.. ....++..+..|..+...|...+.
T Consensus 38 ~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~ 97 (105)
T PF00435_consen 38 EQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVE 97 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555532 345666666677776666665543
No 428
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=36.97 E-value=1.7e+02 Score=21.54 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=21.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 29 MISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEM 78 (145)
Q Consensus 29 ~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l 78 (145)
+..|+.-|...=. ++..++++..++..+-.+-..|..+...+...+..+
T Consensus 40 ~~~n~~lAe~nL~-~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 40 LAENEELAEQNLS-LEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555543322 234444455555544444444444444444444444
No 429
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=36.85 E-value=4.4e+02 Score=27.25 Aligned_cols=37 Identities=8% Similarity=0.092 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 67 NIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 67 ~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
++.....+...+.++|..|+.++..+......+....
T Consensus 502 k~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~ 538 (1317)
T KOG0612|consen 502 KLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSL 538 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555566666666665555555444333
No 430
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=36.79 E-value=89 Score=21.63 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=10.5
Q ss_pred CCCCCcCCCCCCCCCCCC
Q 032187 117 PEIPDPLMKPWQLPCPMQ 134 (145)
Q Consensus 117 ~~~~d~~~~p~~~~~~~q 134 (145)
.++|..|.--.+.+|+.|
T Consensus 56 ~niscsf~v~~~I~y~L~ 73 (76)
T PF07334_consen 56 LNISCSFQVTLQIPYELQ 73 (76)
T ss_pred CCCCeEEEeecceeeeCC
Confidence 445666655556666654
No 431
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=36.77 E-value=2.6e+02 Score=26.33 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 64 LKQNIDSSVQRYVEMESANNIL 85 (145)
Q Consensus 64 L~~~~~~l~~~~~~l~~EN~~L 85 (145)
|..++..+..++.....+|..|
T Consensus 92 L~kElE~L~~qlqaqv~~ne~L 113 (617)
T PF15070_consen 92 LRKELESLEEQLQAQVENNEQL 113 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334443333333333333
No 432
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.77 E-value=3.2e+02 Score=26.41 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 032187 42 KKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYV-------EMESANNILRVQA 89 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~-------~l~~EN~~Lra~~ 89 (145)
++--++.+|..++....+.+..-+...+.+.+.+. .++.||..||+++
T Consensus 472 ~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~ 526 (716)
T KOG4593|consen 472 KLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQL 526 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777766666665555555444444 4455555555443
No 433
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.71 E-value=3.4e+02 Score=24.97 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 73 QRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 73 ~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
.+......+|..|++...-+..++.
T Consensus 396 kel~~~~E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 396 KELKEEREENKKLIKNQDVWRGKLK 420 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344444566666555444333333
No 434
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=36.32 E-value=1.1e+02 Score=19.96 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 032187 78 MESANNILRVQAMELTDRL-RSLNSVLQIWAE 108 (145)
Q Consensus 78 l~~EN~~Lra~~~~L~~rl-~~l~~i~~~~~~ 108 (145)
+..+|..||.++..=+-.. +...+++.+...
T Consensus 4 ~~~~ve~Lr~el~~~RikvS~a~~~li~y~e~ 35 (63)
T smart00224 4 LRKEVEQLRKELSRERIKVSKAAEELLAYCEQ 35 (63)
T ss_pred HHHHHHHHHHHHCCceehHHHHHHHHHHHHHc
Confidence 3445555655554322222 246677777754
No 435
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=36.18 E-value=1.1e+02 Score=25.26 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 61 NAMLKQNIDSSVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 61 N~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
++.|........+.++.+..||..|++++.+|.
T Consensus 107 i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 107 IQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444555566677778888888777766
No 436
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=36.17 E-value=3.2e+02 Score=24.51 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 77 EMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 77 ~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
.+..+-..|+..+.-|..-+..|....
T Consensus 204 ~l~~~~~~l~~~~~~l~~~l~~l~~~~ 230 (475)
T PF10359_consen 204 ELERHISSLKERIEFLENMLEDLEDSE 230 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444555566666666666666665444
No 437
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=36.02 E-value=1.5e+02 Score=20.52 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
+-+..|+..-..|..-|.....++..+...+..=..-=..++..+.++..++..|+..+..
T Consensus 22 ~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 22 QTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666655544444455788888999999999887744
No 438
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=35.87 E-value=2e+02 Score=21.97 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 032187 46 QMEDLVNEI 54 (145)
Q Consensus 46 ~l~eLe~~v 54 (145)
|+..|++.+
T Consensus 25 ~v~~LEreL 33 (140)
T PF10473_consen 25 HVESLEREL 33 (140)
T ss_pred HHHHHHHHH
Confidence 444444433
No 439
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=35.73 E-value=3e+02 Score=24.05 Aligned_cols=53 Identities=8% Similarity=0.176 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
++..|-.+...+..++..+++.|.....-...+..++.++++.|..+..-+..
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666666666666666666666666666666665554433
No 440
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.62 E-value=3.3e+02 Score=27.11 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032187 34 ESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAE 108 (145)
Q Consensus 34 eSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~ 108 (145)
++-..+|.+-...+++|..++..++..+..|..+-..|..++.....-+..--++..+|.+.+..-..|.+.+++
T Consensus 475 e~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikd 549 (1118)
T KOG1029|consen 475 EEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKD 549 (1118)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHH
No 441
>PRK14160 heat shock protein GrpE; Provisional
Probab=35.56 E-value=2.4e+02 Score=22.93 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAML 64 (145)
Q Consensus 50 Le~~v~~L~~eN~~L 64 (145)
|+.++..|+.+...+
T Consensus 66 l~~~l~~l~~e~~el 80 (211)
T PRK14160 66 LKEENKKLENELEAL 80 (211)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 442
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=35.56 E-value=2.1e+02 Score=22.23 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=50.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH----------------------HHHH
Q 032187 29 MISNRESARRSRMKKQKQMEDLVNEINHLESANAM-------LKQNIDSSVQRY----------------------VEME 79 (145)
Q Consensus 29 ~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~-------L~~~~~~l~~~~----------------------~~l~ 79 (145)
+..=.|+||....+-+..|.++..+|...-.+... .+.++..+...+ .-+.
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~r 97 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLR 97 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888999999999998888766554444444 444444333222 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 80 SANNILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 80 ~EN~~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
.+=..|+..-.+|..+|..|..++..+.
T Consensus 98 e~E~qLr~rRD~LErrl~~l~~tierAE 125 (159)
T PF05384_consen 98 EREKQLRERRDELERRLRNLEETIERAE 125 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777788888888888887653
No 443
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=35.44 E-value=12 Score=34.97 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 41 MKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYV 76 (145)
Q Consensus 41 ~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~ 76 (145)
++|-.-+++|..+|..|+..|..+..++..+...+.
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~ 356 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELK 356 (713)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888889999999999887777776665443
No 444
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=35.21 E-value=2.6e+02 Score=26.34 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 51 VNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQ 104 (145)
Q Consensus 51 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~ 104 (145)
......+...|..|..+-..+..+|..+..+|..++.--..|..++..+..+|.
T Consensus 444 ~~~m~e~~s~~~~le~eq~~l~~ey~~~~e~~~e~k~~~~~L~~~~~~~~~llg 497 (707)
T KOG0957|consen 444 SSFMQERDSQIIPLEEEQLRLSREYLAETEANQEKKSSQKHLVERFSANEELLG 497 (707)
T ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Confidence 333333333333344444444444555555555555555555555555554443
No 445
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=34.92 E-value=2.3e+02 Score=22.52 Aligned_cols=32 Identities=34% Similarity=0.546 Sum_probs=18.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 35 SARRSRMKK-QKQMEDLVNEINHLESANAMLKQ 66 (145)
Q Consensus 35 SArrSR~RK-q~~l~eLe~~v~~L~~eN~~L~~ 66 (145)
|||.-+.+. +..+.+|..++..|..||..|+.
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555443 24566666666666666666554
No 446
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=34.88 E-value=2.2e+02 Score=22.49 Aligned_cols=13 Identities=38% Similarity=0.347 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLK 65 (145)
Q Consensus 53 ~v~~L~~eN~~L~ 65 (145)
+...|+.++..|.
T Consensus 119 ~~e~L~~e~~~L~ 131 (170)
T PRK13923 119 EEEKLSWENQTLK 131 (170)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 447
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=34.83 E-value=3.4e+02 Score=26.35 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQ 104 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~ 104 (145)
.+|..++..+..-|..+..++......+..++..-..+.+++..|..++..|..-|.
T Consensus 634 ~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 634 EELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELE 690 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333343333444444444444444444444444445555555555555554443
No 448
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=34.55 E-value=2e+02 Score=21.71 Aligned_cols=51 Identities=22% Similarity=0.147 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
.|..++..++..+......+..|...+..-.+|=..||.++.++...-..|
T Consensus 77 ~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 77 RLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555555555555555555555566666667777777776666555444
No 449
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=34.43 E-value=1.4e+02 Score=21.67 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANA-MLKQNIDSSVQ 73 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~-~L~~~~~~l~~ 73 (145)
|..||.+|...|..|+.+.. .|-.++..-+.
T Consensus 52 K~t~L~~LR~~lt~lQddIN~fLTeRMe~dK~ 83 (103)
T PF08738_consen 52 KDTYLSELRAQLTTLQDDINEFLTERMEEDKA 83 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33999999999999998765 46666554443
No 450
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=34.43 E-value=2.9e+02 Score=23.45 Aligned_cols=37 Identities=16% Similarity=0.033 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032187 73 QRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEI 109 (145)
Q Consensus 73 ~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~ 109 (145)
.....+.+..+.||.+..+|++.+.....-+..+...
T Consensus 202 ~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~ 238 (264)
T PF07246_consen 202 ILHEELEARESGLRNESKWLEHELSDAKEDMIRLRND 238 (264)
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555667777888888888888765555454443
No 451
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=34.38 E-value=15 Score=28.68 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
+|..|..||.-|+.++....+....-+.+...|-.++.
T Consensus 30 qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~ 67 (181)
T PF09311_consen 30 QVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVK 67 (181)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHH
Confidence 56666667776666666655555444444444444443
No 452
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=34.36 E-value=1.5e+02 Score=20.21 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 72 VQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 72 ~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
..+++++.-||-.||.++...+..|
T Consensus 14 QnEWDa~mLE~f~LRk~l~~~rqEL 38 (70)
T PF08606_consen 14 QNEWDALMLENFTLRKQLDQTRQEL 38 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444433
No 453
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=34.13 E-value=1.4e+02 Score=21.47 Aligned_cols=17 Identities=12% Similarity=-0.034 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032187 76 VEMESANNILRVQAMEL 92 (145)
Q Consensus 76 ~~l~~EN~~Lra~~~~L 92 (145)
..+..||..|+.-+.-.
T Consensus 88 ~~L~~E~diLKKa~~~~ 104 (121)
T PRK09413 88 GKKTMENELLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34556666666555433
No 454
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=34.10 E-value=1.7e+02 Score=22.52 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 56 HLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 56 ~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
+|..-|..|+.-+-.++..+..+..+|-+|--+++-|.++|+.+.+-+..+
T Consensus 95 ~l~~in~~l~~ylpkitsmls~vmkqny~lslqie~ls~qlqeisdkldii 145 (177)
T PF12495_consen 95 QLNSINSMLNTYLPKITSMLSDVMKQNYVLSLQIEFLSKQLQEISDKLDII 145 (177)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhccee
Confidence 344455555555555666777888899999999999988888877666544
No 455
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=33.81 E-value=70 Score=23.96 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 54 INHLESANAMLKQNIDSSVQR 74 (145)
Q Consensus 54 v~~L~~eN~~L~~~~~~l~~~ 74 (145)
+++|..+.++|.-++..|+.+
T Consensus 5 ~EeLaaeL~kLqmENk~LKkk 25 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKK 25 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 456
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=33.77 E-value=2.2e+02 Score=21.82 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
++++|-.++..|++.-.....+++.+.....++..|=..|..+
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~E 49 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGE 49 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555555555555555555555444444444444444333
No 457
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=33.74 E-value=97 Score=24.39 Aligned_cols=11 Identities=27% Similarity=0.290 Sum_probs=1.8
Q ss_pred HHHHHHHHHHH
Q 032187 57 LESANAMLKQN 67 (145)
Q Consensus 57 L~~eN~~L~~~ 67 (145)
|+.+++.|+.+
T Consensus 29 L~~~~QRLkDE 39 (166)
T PF04880_consen 29 LREEVQRLKDE 39 (166)
T ss_dssp HHHCH------
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 458
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=33.64 E-value=1.9e+02 Score=26.46 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 63 MLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 63 ~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
.+...+..+..++..|+..|+.|++.+.+++.++-.+..++...
T Consensus 410 el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~ 453 (514)
T KOG4370|consen 410 ELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLL 453 (514)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566667777888888889999999888888777776664
No 459
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.60 E-value=1.4e+02 Score=21.86 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 65 KQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 65 ~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
+.++...++-+.....+|..|.+.+++|.++|.
T Consensus 58 REEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 58 REEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555566667788888888888888876
No 460
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=33.38 E-value=2.2e+02 Score=21.74 Aligned_cols=57 Identities=23% Similarity=0.193 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLE-SANAMLKQNIDSSVQRYVEMESANNIL---RVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 47 l~eLe~~v~~L~-~eN~~L~~~~~~l~~~~~~l~~EN~~L---ra~~~~L~~rl~~l~~i~~~ 105 (145)
++.|+.++..|. .+..++...+....... =.+||+.. +.+...|..|+..|...|..
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~Ar~~G--DlsENaeY~aak~~~~~le~rI~~L~~~L~~ 70 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWAASLG--DRSENADYQYGKKRLREIDRRVRFLTKRLEN 70 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHcC--CcchhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666654 24445555444332111 12466644 44556777777777777765
No 461
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=33.36 E-value=2e+02 Score=21.21 Aligned_cols=62 Identities=6% Similarity=0.092 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
..++.|...|..+=.--..|..+...|......+..++..+-.-+..+...|+-+++|=+++
T Consensus 33 ~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDveNWa 94 (121)
T PF06320_consen 33 ALVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDVENWA 94 (121)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 44555566666665555566666667777777777777777777777777777777665554
No 462
>PRK11530 hypothetical protein; Provisional
Probab=33.17 E-value=1.1e+02 Score=24.52 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYVEMESANN 83 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~ 83 (145)
.+|.+|..+..+|..++..|+++..+++.+|.
T Consensus 24 ~ev~ql~~~vs~LNqem~~Lt~qa~aleqQn~ 55 (183)
T PRK11530 24 SEVRQMHNSVSTLNQEMTQLTQQAVAIEQQNR 55 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777777777777777777764
No 463
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=32.99 E-value=4.7e+02 Score=25.46 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
++..|+..-..|+.++..-...+..+..+|..|+.++..-..++..+.--|..
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~ 640 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNK 640 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666677778888888888887766666655444433
No 464
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=32.78 E-value=3.4e+02 Score=23.82 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDS 70 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~ 70 (145)
.+++.++..|+.+...+..++..
T Consensus 239 ~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 239 ATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444443
No 465
>PLN02678 seryl-tRNA synthetase
Probab=32.68 E-value=3.7e+02 Score=24.22 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 73 QRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 73 ~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
++...+..|-..|..++.++...+..
T Consensus 78 ~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 78 AETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555543
No 466
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=32.67 E-value=3.1e+02 Score=23.19 Aligned_cols=14 Identities=7% Similarity=0.280 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLE 58 (145)
Q Consensus 45 ~~l~eLe~~v~~L~ 58 (145)
+++.+++.++...+
T Consensus 177 ~ql~~~~~~l~~ae 190 (362)
T TIGR01010 177 NEVKEAEQRLNATK 190 (362)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 467
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.45 E-value=1.8e+02 Score=21.76 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 42 KKQKQMEDLVNEINHLESANAMLKQNIDS 70 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~~eN~~L~~~~~~ 70 (145)
.|..-+++|+.++..|+.....|..+-..
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~ 95 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEK 95 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666665555555554444443
No 468
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=32.43 E-value=1.9e+02 Score=25.07 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032187 63 MLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISG 111 (145)
Q Consensus 63 ~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~~g 111 (145)
.|..+...+.+....+..+|...+..+..|..+|..+-....-++..-|
T Consensus 105 ~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~ 153 (355)
T PF09766_consen 105 RLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLG 153 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 3555555555566666667777777776666666665554444444433
No 469
>PTZ00464 SNF-7-like protein; Provisional
Probab=32.33 E-value=2.7e+02 Score=22.50 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQRYVEM 78 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~~~~l 78 (145)
..++.....+......+.+....+
T Consensus 71 K~~E~ql~~l~~q~~nleq~~~~i 94 (211)
T PTZ00464 71 RMYQNQQDMMMQQQFNMDQLQFTT 94 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333
No 470
>PLN02320 seryl-tRNA synthetase
Probab=32.28 E-value=4.1e+02 Score=24.50 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 032187 31 SNRESARRSRMKKQ-----KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEME--SANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 31 sNReSArrSR~RKq-----~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~--~EN~~Lra~~~~L~~rl~~l~ 100 (145)
.|.+.-+.+-.++. ..+..|..+...+..+...|+.+.+.+...+.... .+-..|.+++.+|.+++..|.
T Consensus 74 ~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le 150 (502)
T PLN02320 74 DNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLE 150 (502)
T ss_pred hCHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46555555444442 34444555556666666666666666555543210 122334444444444444443
No 471
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=32.20 E-value=2e+02 Score=20.82 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=28.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 26 RKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQ 73 (145)
Q Consensus 26 ~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~ 73 (145)
...-..-||.|+...-=++...+.|+.--..|..+...-..+|..+..
T Consensus 50 ag~~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 50 AGGAFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667788888776666666665555555555554445555554443
No 472
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.19 E-value=2.7e+02 Score=22.41 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRY-------VEM-ESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~-------~~l-~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
.|++.||..+..|...-..|......|...+ ..+ .+||..|+.-+..|.+-+..+.
T Consensus 11 ~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~lae~~~~i~ 74 (211)
T cd07598 11 ERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFAECLAALQ 74 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444444444444333 222 3478888877776665444444
No 473
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=31.98 E-value=2.1e+02 Score=21.22 Aligned_cols=9 Identities=56% Similarity=0.818 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 032187 91 ELTDRLRSL 99 (145)
Q Consensus 91 ~L~~rl~~l 99 (145)
+|..+|..|
T Consensus 111 ~L~~~le~l 119 (141)
T PF13874_consen 111 ELRKRLEAL 119 (141)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333444333
No 474
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=31.96 E-value=2.2e+02 Score=28.01 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032187 84 ILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 84 ~Lra~~~~L~~rl~~l~~i~ 103 (145)
.+++++..|+.+|...+..+
T Consensus 104 ~i~eq~~~lr~sL~l~~~~~ 123 (835)
T COG3264 104 TIREQIAVLRGSLLLSRILL 123 (835)
T ss_pred HHHHHHHHhcchHHHHHHHH
Confidence 33444444444444444444
No 475
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.87 E-value=1.8e+02 Score=28.01 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 38 RSRMKKQKQMEDLVNEINHLESANAMLKQ---NIDSSVQRYVEMES---ANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 38 rSR~RKq~~l~eLe~~v~~L~~eN~~L~~---~~~~l~~~~~~l~~---EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
++|..|+..+..|.+++..|..-+..|.. .+....-..+.+.. |=..|+.+++....+.+.+..|+..
T Consensus 552 ~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~vF~~ 625 (716)
T KOG4593|consen 552 KARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAEKRNQRLKEVFAS 625 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777666666664444322 11111122222322 6677777777777776666655544
No 476
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=31.44 E-value=5.5e+02 Score=25.80 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 032187 60 ANAMLKQNID 69 (145)
Q Consensus 60 eN~~L~~~~~ 69 (145)
+.+.|...+.
T Consensus 121 ekq~lQ~ti~ 130 (1265)
T KOG0976|consen 121 EKQKLQDTIQ 130 (1265)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 477
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=31.41 E-value=2.9e+02 Score=22.61 Aligned_cols=80 Identities=16% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CcCCCCCCCc
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGI-NVEIPEIPDP 122 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~~g~-~~~~~~~~d~ 122 (145)
+.++.++-.++..+...-..+...+..+...+....++ +..+.-..|..+.-|+--..-.+|. +|.++.+|.
T Consensus 215 ~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~------~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~- 287 (318)
T TIGR00383 215 REYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNN------KMNEIMKILTVVSTIFIPLTFIAGIYGMNFKFMPE- 287 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCcc-
Q ss_pred CCCCCCCCCC
Q 032187 123 LMKPWQLPCP 132 (145)
Q Consensus 123 ~~~p~~~~~~ 132 (145)
-.|..+|+
T Consensus 288 --l~~~~gy~ 295 (318)
T TIGR00383 288 --LNWKYGYP 295 (318)
T ss_pred --ccchhHHH
No 478
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=31.34 E-value=2.1e+02 Score=20.94 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032187 41 MKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAE 108 (145)
Q Consensus 41 ~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~ 108 (145)
.+....+.+++.++..++.+..............|..-..-++..-..+..|+..+..+..-+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~ 80 (132)
T PF07926_consen 13 QRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKA 80 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.31 E-value=3.2e+02 Score=22.96 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 34 ESARRSRMKKQ-KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 34 eSArrSR~RKq-~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
++++++|.=+. +.+..++.++.+|..|...+...+...+ ......+++|..++..|+
T Consensus 45 ~~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~---~~~~t~~~~ie~~l~~l~ 102 (247)
T COG3879 45 ESVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVR---RSVLTDDAALEDRLEKLR 102 (247)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHhHHHHHHHHHHHHH
No 480
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=31.26 E-value=1.9e+02 Score=20.31 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQ---RYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~---~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
..-+.+|...+..|......|...+..+.+ +...++.-=..|-+-..+|..+++.|
T Consensus 41 ~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 41 KDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 481
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=31.22 E-value=3.6e+02 Score=23.54 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQ 104 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~ 104 (145)
|.+.+...|++|-++|........++..++..--......+..-..+++.|..-+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk 56 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLK 56 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.10 E-value=4.1e+02 Score=26.93 Aligned_cols=64 Identities=22% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAE 108 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~ 108 (145)
++=..|..-+..|+.-+..-......+.........||.+|+...+.|..++..+.+.|..++.
T Consensus 375 qqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkE 438 (1243)
T KOG0971|consen 375 QQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKE 438 (1243)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=31.05 E-value=1.9e+02 Score=24.25 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
.....+..||+.|+.++. .+.....+-..|+++...|+.-|
T Consensus 66 ~~~~~~~~en~~Lk~~l~----~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 66 KSLKDLALENEELKKELA----ELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHhHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
No 484
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=30.96 E-value=4.2e+02 Score=24.24 Aligned_cols=73 Identities=26% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 28 RMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDS----------SVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 28 R~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~----------l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
|+ ++|+-|.-|-.-+-..+-+++.+|..|+.+...|.+.++. +..++..+..+=..|.++...|.....
T Consensus 397 rk-kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~eq~ 475 (486)
T KOG2185|consen 397 RK-KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALSNEQV 475 (486)
T ss_pred hh-hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q ss_pred HHHH
Q 032187 98 SLNS 101 (145)
Q Consensus 98 ~l~~ 101 (145)
+-++
T Consensus 476 sr~s 479 (486)
T KOG2185|consen 476 SRES 479 (486)
T ss_pred hhhh
No 485
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=30.91 E-value=5.3e+02 Score=25.40 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 37 RRSRMKKQKQMEDLVNEINHLESANAM---------------LKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 37 rrSR~RKq~~l~eLe~~v~~L~~eN~~---------------L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
+|.=-+--.+++++|+++.=|+.|..+ .-.++..+..++..++.|=..+.+-...|+..+..|.+
T Consensus 48 QR~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E 127 (829)
T KOG2189|consen 48 QRKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLE 127 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHhhcCC
Q 032187 102 VLQIWAEISGI 112 (145)
Q Consensus 102 i~~~~~~~~g~ 112 (145)
....+.....+
T Consensus 128 ~~~vl~~t~~F 138 (829)
T KOG2189|consen 128 LKYVLEKTDEF 138 (829)
T ss_pred HHHHHHhhhhh
No 486
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=30.83 E-value=1.9e+02 Score=20.17 Aligned_cols=52 Identities=6% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
+.+++|...|..|.....+|...++.+.........||..-.+++.......
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a~s~ 76 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQAQSY 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
No 487
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=30.81 E-value=1.9e+02 Score=20.37 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMES 80 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~ 80 (145)
.+..+..+...|..||++|..+......+......
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~v 58 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKV 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=30.66 E-value=2.9e+02 Score=25.64 Aligned_cols=75 Identities=5% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 30 ISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQ 104 (145)
Q Consensus 30 ~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~ 104 (145)
..++..++....-+++.+++++.+|..|+..+=.--..+....+.+..+..|=...++.+..+.+.|......+.
T Consensus 176 ~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~ 250 (555)
T TIGR03545 176 MQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLK 250 (555)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
No 489
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.65 E-value=5.6e+02 Score=25.61 Aligned_cols=87 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 22 DERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAM--LKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 22 deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~--L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
.....|++.+.||--+.--.-.++.++.-|+.-..|++.-+. =+.++..+..+...-...|-.|++....|.-+|..|
T Consensus 370 qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletL 449 (1118)
T KOG1029|consen 370 QLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETL 449 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHh
Q 032187 100 NSVLQIWAE 108 (145)
Q Consensus 100 ~~i~~~~~~ 108 (145)
|.-++.+..
T Consensus 450 n~k~qqls~ 458 (1118)
T KOG1029|consen 450 NFKLQQLSG 458 (1118)
T ss_pred HHHHHHHhh
No 490
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.62 E-value=2.5e+02 Score=21.47 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----
Q 032187 42 KKQKQMEDLVNEINHLESANAMLK-----QNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGI---- 112 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~~eN~~L~-----~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~~g~---- 112 (145)
+......+|..++.+|..|+..+. .+-..++++++.++.|-..+.++...-+......-..+-.+ -.+|.
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 115 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWV-LTTLPFFVL 115 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-------------
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhh
Q ss_pred -----CcCCCCCCCcCC-CC--CCCCCCCCcc
Q 032187 113 -----NVEIPEIPDPLM-KP--WQLPCPMQPL 136 (145)
Q Consensus 113 -----~~~~~~~~d~~~-~p--~~~~~~~qpi 136 (145)
...+-.+|+..+ .| |-+.+|.-|.
T Consensus 116 ~~~~rk~pV~~lp~~~~p~p~~~lLSfP~~~~ 147 (161)
T PF04420_consen 116 RFWYRKTPVFYLPKGWFPWPFEWLLSFPTAPL 147 (161)
T ss_dssp --------------------------------
T ss_pred heeecCceEEEECchhhHHHHHHheecccCCC
No 491
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=30.60 E-value=1.2e+02 Score=22.53 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 31 SNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQN 67 (145)
Q Consensus 31 sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~ 67 (145)
+.+....+-+...++.+++|+.++..|+.+.+.+..+
T Consensus 98 Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~~ 134 (134)
T PF07047_consen 98 RSARKEAKKEEELQERLEELEERIEELEEQVEKQQER 134 (134)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 492
>KOG3633 consensus BAG family molecular chaperone regulator 2 [Posttranslational modification, protein turnover, chaperones]
Probab=30.52 E-value=3e+02 Score=22.44 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCcccCCCCCCCCCCCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 1 MASIQRQGSSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMES 80 (145)
Q Consensus 1 m~~~~~~~ssgs~~~~~~~~~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~ 80 (145)
|+++ ..++++.+|.|.-...-.+-.+=.-.| .|--.-|+.|+.+|..|+..-..|..+-..+-..++.+..
T Consensus 14 ma~s-~~t~~~~eG~~~rss~~~~~dr~~~~s--------~r~v~~LD~lelrVE~LRk~A~~le~eKe~lL~s~~~I~~ 84 (219)
T KOG3633|consen 14 MAPS-PLTSPITEGKPKRSSKLQRNDRPFNAS--------ERFVTILDSLELRVEKLRKDALNLEEEKEYLLMSMDLIKS 84 (219)
T ss_pred CCCC-CCCCCCCCCCCCcchHHHhhcCcccch--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHH------HHHHHHHHHHH
Q 032187 81 ANNIL------RVQAMELTDRL 96 (145)
Q Consensus 81 EN~~L------ra~~~~L~~rl 96 (145)
-|-.- |+++.-...||
T Consensus 85 ~~~M~~~se~eREEi~l~~~Rl 106 (219)
T KOG3633|consen 85 NEMMQNMSEAEREEIILYLQRL 106 (219)
T ss_pred hHHHHHHhhhhHHHHHHHHHHH
No 493
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.36 E-value=2.9e+02 Score=22.14 Aligned_cols=55 Identities=13% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEI-SGI 112 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~-~g~ 112 (145)
.+|+.++.....|+.++...+..+...+..+.+ .|..-...+|+++..++.- +|+
T Consensus 121 ~el~eK~~~~~~Everi~~~ieE~v~eLe~~a~----------~lke~~~~i~~l~~~ik~~~~g~ 176 (181)
T COG4345 121 KELEEKLADAMEEVERIEKTIEELVSELESLAN----------KLKEVTDVINSLVERIKQEHTGL 176 (181)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHcccchh
No 494
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=30.28 E-value=2.7e+02 Score=21.84 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCCCC
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNIL-----RVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIP 120 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L-----ra~~~~L~~rl~~l~~i~~~~~~~~g~~~~~~~~~ 120 (145)
++...+.|+..-..+..++..|.+....+..+=... |.+++++..+|+.|..-+...+...-..-..+..+
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~~~~~~~~ 158 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPIYITPDTEPTYE 158 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccc
No 495
>PLN03188 kinesin-12 family protein; Provisional
Probab=30.25 E-value=3.2e+02 Score=28.29 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=0.0
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH------------------------HHH
Q 032187 32 NRESARRSRMK-KQKQMEDLVNEINHLESA-----------NAMLKQNIDSSV------------------------QRY 75 (145)
Q Consensus 32 NReSArrSR~R-Kq~~l~eLe~~v~~L~~e-----------N~~L~~~~~~l~------------------------~~~ 75 (145)
.+.+|+.-++- --+.+..|.++++.|+.| |..|+.++..+- +++
T Consensus 1141 kkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~ 1220 (1320)
T PLN03188 1141 KKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRA 1220 (1320)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032187 76 VEMESANNILRVQAMELTDR 95 (145)
Q Consensus 76 ~~l~~EN~~Lra~~~~L~~r 95 (145)
..++.||..|+.++..|..+
T Consensus 1221 ~~~eqe~~~~~k~~~klkrk 1240 (1320)
T PLN03188 1221 MDAEQEAAEAYKQIDKLKRK 1240 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 496
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=30.15 E-value=3.3e+02 Score=22.81 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQ 104 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~ 104 (145)
......+..+...+..+...+..++..+...+..+..+=..+++++..+...+.....++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~ 189 (423)
T TIGR01843 129 KGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKE 189 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=30.09 E-value=3.2e+02 Score=26.01 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSV-----------QRYVEMESANNILRVQAMELTDRLRSLNSV 102 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~-----------~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i 102 (145)
++.+...+.+...+|.+|...+..+. ..+..|+.++......+.+|..+|+.-++.
T Consensus 280 i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDY 346 (629)
T KOG0963|consen 280 IDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDY 346 (629)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
No 498
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=30.04 E-value=59 Score=29.12 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 40 RMKKQKQMEDLVNEINHLESAN 61 (145)
Q Consensus 40 R~RKq~~l~eLe~~v~~L~~eN 61 (145)
|.-|++++.+|++++..|+.|.
T Consensus 397 ~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 397 REAKRRELEELEAQARALRAEL 418 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
No 499
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=29.89 E-value=2.5e+02 Score=21.40 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSV-----QRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~-----~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
....+...|+.|..+++.++..++ .++..+...=..|.+++.++...+..-..-+...
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~ 99 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKS 99 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.87 E-value=6.2e+02 Score=25.85 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 23 ERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSV 102 (145)
Q Consensus 23 eRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i 102 (145)
++..+-...-=+...+--.++....+.|.-++.+|+.+......++..+...+..+..|+..|++.+.....-+..+..-
T Consensus 793 ~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~e 872 (1174)
T KOG0933|consen 793 EKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAE 872 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q ss_pred HHHHHh
Q 032187 103 LQIWAE 108 (145)
Q Consensus 103 ~~~~~~ 108 (145)
+...+.
T Consensus 873 l~~~k~ 878 (1174)
T KOG0933|consen 873 LKDQKA 878 (1174)
T ss_pred HHHHHH
Done!