Query 032187
Match_columns 145
No_of_seqs 156 out of 676
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:26:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.6 5.3E-16 1.8E-20 100.2 6.2 52 24-75 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.4 4.9E-13 1.7E-17 88.2 8.9 51 23-73 1-51 (63)
3 2dgc_A Protein (GCN4); basic d 99.4 8.4E-13 2.9E-17 87.3 6.6 47 29-75 14-60 (63)
4 1t2k_D Cyclic-AMP-dependent tr 99.3 7.2E-12 2.5E-16 81.8 8.8 49 24-72 1-49 (61)
5 1jnm_A Proto-oncogene C-JUN; B 99.3 1.7E-11 5.9E-16 80.3 7.6 48 25-72 2-49 (62)
6 1gd2_E Transcription factor PA 99.2 7.1E-11 2.4E-15 79.6 8.1 60 26-85 10-69 (70)
7 1ci6_A Transcription factor AT 99.1 3.2E-10 1.1E-14 74.7 7.8 59 24-89 2-60 (63)
8 1hjb_A Ccaat/enhancer binding 98.7 7.5E-08 2.6E-12 67.3 9.5 50 20-69 11-60 (87)
9 1gu4_A CAAT/enhancer binding p 98.7 1.2E-07 4E-12 65.0 9.2 51 21-71 12-62 (78)
10 3a5t_A Transcription factor MA 98.4 6.3E-09 2.2E-13 75.2 -3.5 64 24-101 37-100 (107)
11 2wt7_B Transcription factor MA 98.2 1.1E-05 3.7E-10 56.6 9.4 48 22-69 25-72 (90)
12 2oqq_A Transcription factor HY 97.5 0.00033 1.1E-08 42.4 6.1 39 44-89 2-40 (42)
13 2jee_A YIIU; FTSZ, septum, coi 97.0 0.0065 2.2E-07 41.7 9.1 52 49-100 24-75 (81)
14 1skn_P DNA-binding domain of S 96.4 0.0013 4.4E-08 46.0 2.1 31 22-52 60-90 (92)
15 1deb_A APC protein, adenomatou 96.0 0.033 1.1E-06 35.0 6.9 47 47-93 5-51 (54)
16 3hnw_A Uncharacterized protein 95.6 0.21 7.1E-06 36.9 10.9 61 42-102 72-132 (138)
17 2w6a_A ARF GTPase-activating p 95.6 0.079 2.7E-06 34.3 7.4 42 46-87 21-62 (63)
18 2jee_A YIIU; FTSZ, septum, coi 95.4 0.31 1.1E-05 33.2 10.5 59 45-103 6-64 (81)
19 1hjb_A Ccaat/enhancer binding 94.9 0.093 3.2E-06 36.2 6.6 40 67-106 37-76 (87)
20 1ci6_A Transcription factor AT 94.8 0.12 4.1E-06 33.3 6.6 40 65-104 22-61 (63)
21 3he5_A Synzip1; heterodimeric 94.7 0.19 6.5E-06 30.4 6.8 44 46-89 4-47 (49)
22 2wt7_A Proto-oncogene protein 94.2 0.19 6.5E-06 32.2 6.6 40 66-105 23-62 (63)
23 1t2k_D Cyclic-AMP-dependent tr 93.9 0.24 8.4E-06 31.3 6.6 38 66-103 22-59 (61)
24 1go4_E MAD1 (mitotic arrest de 93.5 0.46 1.6E-05 33.5 8.1 30 46-75 13-42 (100)
25 1gu4_A CAAT/enhancer binding p 93.5 0.14 4.7E-06 34.6 5.1 38 67-104 37-74 (78)
26 3s9g_A Protein hexim1; cyclin 93.4 0.66 2.2E-05 32.8 8.6 43 48-90 40-89 (104)
27 3m48_A General control protein 92.6 0.17 5.7E-06 29.0 3.7 27 47-73 2-28 (33)
28 2eqb_B RAB guanine nucleotide 92.5 1.3 4.5E-05 31.0 9.1 62 44-105 11-73 (97)
29 2oxj_A Hybrid alpha/beta pepti 92.2 0.3 1E-05 28.1 4.4 28 46-73 2-29 (34)
30 3hnw_A Uncharacterized protein 91.9 2.7 9.2E-05 30.8 10.8 48 53-100 76-123 (138)
31 1kd8_B GABH BLL, GCN4 acid bas 91.8 0.4 1.4E-05 27.9 4.7 29 46-74 2-30 (36)
32 3vmx_A Voltage-gated hydrogen 91.7 0.8 2.7E-05 28.3 6.4 38 51-88 3-40 (48)
33 1jnm_A Proto-oncogene C-JUN; B 91.7 0.3 1E-05 31.1 4.6 38 66-103 22-59 (62)
34 1wlq_A Geminin; coiled-coil; 2 91.5 0.73 2.5E-05 31.5 6.7 45 58-106 37-81 (83)
35 1gd2_E Transcription factor PA 91.4 0.44 1.5E-05 31.5 5.4 35 64-98 34-68 (70)
36 1kd8_A GABH AIV, GCN4 acid bas 91.4 0.27 9.1E-06 28.6 3.7 29 46-74 2-30 (36)
37 1p9i_A Cortexillin I/GCN4 hybr 91.1 0.35 1.2E-05 26.7 3.9 24 73-96 6-29 (31)
38 2zxx_A Geminin; coiled-coil, c 90.9 0.72 2.5E-05 31.3 6.1 44 58-105 33-76 (79)
39 3cvf_A Homer-3, homer protein 90.9 1.1 3.7E-05 30.3 7.1 60 47-106 8-71 (79)
40 3c3f_A Alpha/beta peptide with 90.6 0.53 1.8E-05 27.0 4.4 28 46-73 2-29 (34)
41 2c9l_Y EB1, zebra, BZLF1 trans 90.6 2.1 7.2E-05 27.2 7.7 24 29-52 6-29 (63)
42 2dfs_A Myosin-5A; myosin-V, in 89.8 5.4 0.00018 38.0 13.2 27 73-99 1023-1049(1080)
43 3a2a_A Voltage-gated hydrogen 89.6 1.3 4.5E-05 28.1 6.1 38 51-88 10-47 (58)
44 2kz5_A Transcription factor NF 89.5 0.022 7.7E-07 39.7 -2.4 22 24-45 66-87 (91)
45 3c3g_A Alpha/beta peptide with 89.5 0.75 2.6E-05 26.2 4.4 27 47-73 2-28 (33)
46 2wvr_A Geminin; DNA replicatio 89.2 1.5 5E-05 34.7 7.5 45 58-106 114-158 (209)
47 2hy6_A General control protein 88.4 0.88 3E-05 26.1 4.2 28 46-73 2-29 (34)
48 2oqq_A Transcription factor HY 88.2 1 3.5E-05 27.0 4.6 25 44-68 16-40 (42)
49 2bni_A General control protein 88.1 0.78 2.7E-05 26.3 3.9 27 46-72 2-28 (34)
50 3efg_A Protein SLYX homolog; x 88.1 2 6.8E-05 28.7 6.6 49 45-100 14-62 (78)
51 1uo4_A General control protein 87.8 0.85 2.9E-05 26.2 3.9 28 46-73 2-29 (34)
52 2wq1_A General control protein 87.6 1.2 4.1E-05 25.4 4.4 27 47-73 2-28 (33)
53 2xdj_A Uncharacterized protein 87.6 4.9 0.00017 27.1 8.9 31 48-78 23-53 (83)
54 3bas_A Myosin heavy chain, str 87.2 5.2 0.00018 27.0 9.6 55 43-97 33-87 (89)
55 3a7p_A Autophagy protein 16; c 87.1 6.8 0.00023 29.5 9.7 37 52-88 96-132 (152)
56 3mq7_A Bone marrow stromal ant 86.9 5.1 0.00018 29.0 8.6 49 49-97 61-109 (121)
57 3oja_B Anopheles plasmodium-re 86.8 8.1 0.00028 33.0 11.4 54 45-98 509-562 (597)
58 3s4r_A Vimentin; alpha-helix, 86.8 5.8 0.0002 27.1 9.6 26 49-74 20-45 (93)
59 3efg_A Protein SLYX homolog; x 86.6 2.5 8.5E-05 28.2 6.4 52 49-107 11-62 (78)
60 2dgc_A Protein (GCN4); basic d 86.3 1.2 4.1E-05 28.5 4.5 31 66-96 30-60 (63)
61 1t6f_A Geminin; coiled-coil, c 86.2 1.5 5.2E-05 25.4 4.5 29 58-86 6-34 (37)
62 3cve_A Homer protein homolog 1 86.2 5.5 0.00019 26.4 10.1 59 48-106 3-65 (72)
63 2w83_C C-JUN-amino-terminal ki 86.0 6 0.0002 26.6 9.4 52 48-99 5-63 (77)
64 1dip_A Delta-sleep-inducing pe 85.0 0.6 2.1E-05 31.4 2.6 26 62-87 18-43 (78)
65 3s9g_A Protein hexim1; cyclin 84.9 8 0.00027 27.2 8.5 29 44-72 64-92 (104)
66 1nkp_B MAX protein, MYC proto- 84.1 1.8 6E-05 28.7 4.7 23 77-99 51-73 (83)
67 3a7o_A Autophagy protein 16; c 84.0 6.4 0.00022 26.2 7.3 50 45-94 25-74 (75)
68 2yy0_A C-MYC-binding protein; 83.2 3.1 0.00011 25.8 5.3 16 53-68 20-35 (53)
69 2yy0_A C-MYC-binding protein; 83.0 3.2 0.00011 25.8 5.3 28 74-101 20-47 (53)
70 3mq7_A Bone marrow stromal ant 82.3 11 0.00038 27.2 8.6 28 74-101 72-99 (121)
71 3m91_A Proteasome-associated A 82.3 6.7 0.00023 24.2 7.2 19 49-67 13-31 (51)
72 3m9b_A Proteasome-associated A 82.1 2.4 8.3E-05 34.3 5.6 29 77-105 65-93 (251)
73 3ol1_A Vimentin; structural ge 81.9 11 0.00039 26.6 10.9 27 45-71 20-46 (119)
74 4emc_A Monopolin complex subun 81.9 10 0.00035 29.4 8.9 68 45-112 13-84 (190)
75 3iv1_A Tumor susceptibility ge 81.7 9.6 0.00033 25.6 9.2 63 40-102 13-75 (78)
76 3o0z_A RHO-associated protein 81.5 16 0.00053 27.9 11.7 65 28-99 73-137 (168)
77 1fmh_A General control protein 81.4 3.6 0.00012 22.9 4.5 25 47-71 3-27 (33)
78 1dh3_A Transcription factor CR 81.3 1.9 6.4E-05 26.9 3.8 30 67-96 23-52 (55)
79 1p9i_A Cortexillin I/GCN4 hybr 81.0 2.8 9.6E-05 23.0 3.9 26 47-72 1-26 (31)
80 1dip_A Delta-sleep-inducing pe 80.9 2 6.8E-05 28.8 4.0 22 45-66 22-43 (78)
81 1uii_A Geminin; human, DNA rep 80.8 5.4 0.00018 27.2 6.2 29 59-87 46-74 (83)
82 4h22_A Leucine-rich repeat fli 80.4 10 0.00035 26.8 7.7 13 20-32 6-18 (103)
83 2oxj_A Hybrid alpha/beta pepti 80.4 3.6 0.00012 23.5 4.4 29 68-96 3-31 (34)
84 1nlw_A MAD protein, MAX dimeri 80.1 4.9 0.00017 26.7 5.8 14 83-96 64-77 (80)
85 1a93_B MAX protein, coiled coi 79.8 3.5 0.00012 23.6 4.2 27 66-92 7-33 (34)
86 2r2v_A GCN4 leucine zipper; co 79.7 4 0.00014 23.3 4.4 27 46-72 2-28 (34)
87 2dfs_A Myosin-5A; myosin-V, in 79.6 15 0.00052 35.0 10.9 27 54-80 986-1012(1080)
88 3m48_A General control protein 79.4 2.6 8.8E-05 24.0 3.5 28 69-96 3-30 (33)
89 1i84_S Smooth muscle myosin he 79.3 19 0.00066 34.2 11.6 24 74-97 914-937 (1184)
90 3a7p_A Autophagy protein 16; c 79.2 18 0.00061 27.2 12.6 54 46-99 69-122 (152)
91 2v4h_A NF-kappa-B essential mo 78.8 15 0.00052 26.1 12.1 71 29-99 29-102 (110)
92 1wle_A Seryl-tRNA synthetase; 78.6 25 0.00086 30.7 11.3 75 31-105 48-141 (501)
93 1gk6_A Vimentin; intermediate 78.2 10 0.00034 23.7 7.2 51 47-97 2-52 (59)
94 3oja_B Anopheles plasmodium-re 78.2 31 0.001 29.4 11.7 53 52-104 509-561 (597)
95 3ra3_A P1C; coiled coil domain 77.7 1.6 5.4E-05 23.5 2.1 22 78-99 5-26 (28)
96 1ik9_A DNA repair protein XRCC 77.4 23 0.0008 27.5 10.5 42 47-88 134-175 (213)
97 3jsv_C NF-kappa-B essential mo 77.3 15 0.00053 25.4 10.2 71 30-100 8-81 (94)
98 1ic2_A Tropomyosin alpha chain 77.2 13 0.00044 24.4 9.0 29 75-103 43-71 (81)
99 2ocy_A RAB guanine nucleotide 77.0 14 0.00047 27.7 8.1 36 73-108 108-143 (154)
100 2lw1_A ABC transporter ATP-bin 76.8 14 0.00047 24.6 9.0 58 44-101 21-84 (89)
101 2wuj_A Septum site-determining 76.4 2.6 9E-05 26.3 3.3 23 73-95 34-56 (57)
102 3ra3_A P1C; coiled coil domain 76.0 3.3 0.00011 22.3 3.1 24 55-78 3-26 (28)
103 4etp_A Kinesin-like protein KA 75.9 14 0.00048 31.2 8.7 37 58-94 9-45 (403)
104 1nkp_A C-MYC, MYC proto-oncoge 75.4 7.9 0.00027 26.0 5.8 8 45-52 23-30 (88)
105 1go4_E MAD1 (mitotic arrest de 75.4 7.4 0.00025 27.3 5.8 33 66-98 12-44 (100)
106 2j5u_A MREC protein; bacterial 75.2 1.5 5.2E-05 34.9 2.5 12 58-69 25-36 (255)
107 1am9_A Srebp-1A, protein (ster 74.7 6 0.0002 26.2 5.0 72 27-99 5-76 (82)
108 2wuj_A Septum site-determining 74.5 3.7 0.00013 25.6 3.7 29 45-73 27-55 (57)
109 3c3f_A Alpha/beta peptide with 74.5 6.8 0.00023 22.3 4.4 29 68-96 3-31 (34)
110 4emc_A Monopolin complex subun 74.0 12 0.0004 29.1 7.1 61 46-106 21-81 (190)
111 1ses_A Seryl-tRNA synthetase; 73.7 36 0.0012 28.8 10.8 71 32-102 10-86 (421)
112 3vkg_A Dynein heavy chain, cyt 73.7 22 0.00076 37.9 11.0 73 27-99 2017-2103(3245)
113 2w83_C C-JUN-amino-terminal ki 73.5 7.9 0.00027 26.0 5.2 21 49-69 34-54 (77)
114 4dzn_A Coiled-coil peptide CC- 73.5 9.5 0.00032 21.1 5.2 23 50-72 7-29 (33)
115 1i84_S Smooth muscle myosin he 73.2 38 0.0013 32.2 11.8 53 49-101 882-934 (1184)
116 3c3g_A Alpha/beta peptide with 73.1 7.8 0.00027 22.0 4.4 28 69-96 3-30 (33)
117 3oja_A Leucine-rich immune mol 72.7 39 0.0013 28.2 10.8 51 55-105 424-474 (487)
118 1gk7_A Vimentin; intermediate 72.2 6.9 0.00023 22.8 4.2 25 66-90 13-37 (39)
119 3u1c_A Tropomyosin alpha-1 cha 71.8 21 0.00072 24.4 10.7 46 45-90 23-68 (101)
120 3e98_A GAF domain of unknown f 71.0 21 0.00072 28.2 8.2 56 47-106 67-125 (252)
121 3u06_A Protein claret segregat 70.9 17 0.00057 30.9 8.1 46 55-100 6-51 (412)
122 2oa5_A Hypothetical protein BQ 70.7 2.6 9E-05 30.1 2.5 26 45-70 8-33 (110)
123 3u06_A Protein claret segregat 70.3 18 0.00063 30.6 8.2 48 46-93 11-58 (412)
124 4etp_A Kinesin-like protein KA 69.8 21 0.00072 30.1 8.4 35 45-79 10-44 (403)
125 3m9b_A Proteasome-associated A 69.6 6.9 0.00023 31.6 5.1 25 46-70 55-79 (251)
126 1kd8_B GABH BLL, GCN4 acid bas 69.4 12 0.00041 21.6 4.7 28 69-96 4-31 (36)
127 3qne_A Seryl-tRNA synthetase, 69.4 57 0.002 28.4 11.5 26 78-103 76-101 (485)
128 3u1c_A Tropomyosin alpha-1 cha 68.9 25 0.00085 24.1 12.6 57 43-99 42-98 (101)
129 3s4r_A Vimentin; alpha-helix, 68.7 11 0.00039 25.6 5.4 17 74-90 24-40 (93)
130 3q8t_A Beclin-1; autophagy, AT 68.4 25 0.00086 23.9 8.5 66 41-106 21-86 (96)
131 3m91_A Proteasome-associated A 68.3 18 0.00062 22.2 7.1 30 75-104 18-47 (51)
132 1nlw_A MAD protein, MAX dimeri 68.2 9.8 0.00033 25.2 4.9 27 45-71 47-73 (80)
133 2v66_B Nuclear distribution pr 67.0 31 0.0011 24.4 9.4 52 47-98 37-88 (111)
134 2wvr_A Geminin; DNA replicatio 67.0 37 0.0013 26.6 8.6 50 64-113 113-162 (209)
135 3i00_A HIP-I, huntingtin-inter 66.2 29 0.00099 24.8 7.4 49 40-95 35-83 (120)
136 3ra3_B P2F; coiled coil domain 65.9 6.1 0.00021 21.2 2.7 11 82-92 9-19 (28)
137 1zme_C Proline utilization tra 65.4 7.8 0.00027 23.9 3.8 25 44-68 43-67 (70)
138 1fmh_A General control protein 64.5 14 0.00049 20.4 4.2 25 71-95 6-30 (33)
139 2bni_A General control protein 63.8 9.4 0.00032 21.8 3.4 28 69-96 4-31 (34)
140 3swk_A Vimentin; cytoskeleton, 63.2 30 0.001 23.0 8.4 60 48-107 3-83 (86)
141 2e7s_A RAB guanine nucleotide 62.1 44 0.0015 24.5 7.9 60 46-105 33-93 (135)
142 1jcd_A Major outer membrane li 61.5 26 0.00088 21.6 7.7 29 46-74 5-33 (52)
143 1ic2_A Tropomyosin alpha chain 61.3 31 0.0011 22.5 9.2 46 55-100 9-54 (81)
144 1uo4_A General control protein 61.2 13 0.00044 21.2 3.7 27 69-95 4-30 (34)
145 3u59_A Tropomyosin beta chain; 60.6 36 0.0012 23.0 10.5 49 44-92 22-70 (101)
146 2ve7_A Kinetochore protein HEC 60.1 36 0.0012 27.7 7.8 29 51-79 184-212 (315)
147 1nkp_A C-MYC, MYC proto-oncoge 59.7 36 0.0012 22.7 7.4 15 78-92 71-85 (88)
148 2oto_A M protein; helical coil 59.5 47 0.0016 24.0 8.9 31 48-78 53-83 (155)
149 3oja_A Leucine-rich immune mol 59.4 76 0.0026 26.4 11.3 27 43-69 433-459 (487)
150 3i00_A HIP-I, huntingtin-inter 59.3 45 0.0015 23.7 9.6 23 45-67 15-37 (120)
151 1kd8_A GABH AIV, GCN4 acid bas 59.2 16 0.00055 21.0 3.9 26 71-96 6-31 (36)
152 3na7_A HP0958; flagellar bioge 59.1 61 0.0021 25.2 10.2 39 37-75 45-83 (256)
153 3swf_A CGMP-gated cation chann 59.1 36 0.0012 22.5 7.8 48 48-98 3-50 (74)
154 2hy6_A General control protein 58.9 20 0.00067 20.4 4.2 28 69-96 4-31 (34)
155 3w03_C DNA repair protein XRCC 58.9 18 0.00063 27.8 5.5 19 46-64 146-164 (184)
156 3lss_A Seryl-tRNA synthetase; 58.8 90 0.0031 27.1 10.5 22 82-103 113-134 (484)
157 3nmd_A CGMP dependent protein 58.4 36 0.0012 22.4 7.0 26 43-68 38-63 (72)
158 2v71_A Nuclear distribution pr 58.3 61 0.0021 24.9 14.4 45 52-96 88-132 (189)
159 1zxa_A CGMP-dependent protein 57.9 23 0.00078 23.0 5.0 28 42-69 22-49 (67)
160 3qne_A Seryl-tRNA synthetase, 57.9 95 0.0032 27.0 10.9 61 46-106 34-97 (485)
161 3tnu_A Keratin, type I cytoske 57.7 47 0.0016 23.4 10.1 29 47-75 47-75 (131)
162 1nkp_B MAX protein, MYC proto- 57.5 32 0.0011 22.3 5.9 23 75-97 56-78 (83)
163 3q0x_A Centriole protein; cent 57.5 69 0.0024 25.3 9.6 36 67-102 179-214 (228)
164 3vkg_A Dynein heavy chain, cyt 57.4 1.3E+02 0.0045 32.3 12.9 58 48-105 2024-2081(3245)
165 2lz1_A Nuclear factor erythroi 57.3 0.16 5.5E-06 35.3 -5.8 21 24-44 66-86 (90)
166 2xv5_A Lamin-A/C; structural p 56.6 39 0.0013 22.1 8.6 51 47-97 7-57 (74)
167 3tnu_B Keratin, type II cytosk 55.5 51 0.0017 23.2 10.1 29 47-75 45-73 (129)
168 1ses_A Seryl-tRNA synthetase; 55.5 75 0.0026 26.8 9.3 54 52-105 42-96 (421)
169 1lwu_C Fibrinogen gamma chain; 55.0 48 0.0016 27.4 7.8 9 134-142 99-107 (323)
170 1jcd_A Major outer membrane li 54.5 35 0.0012 21.0 7.7 45 52-96 4-48 (52)
171 2ve7_C Kinetochore protein NUF 54.4 9.5 0.00032 30.3 3.3 33 20-52 116-148 (250)
172 3he5_A Synzip1; heterodimeric 54.0 33 0.0011 20.5 7.4 14 75-88 12-25 (49)
173 1am9_A Srebp-1A, protein (ster 53.6 44 0.0015 21.8 7.5 27 44-70 49-75 (82)
174 4dzn_A Coiled-coil peptide CC- 52.8 27 0.00094 19.2 4.8 20 73-92 9-28 (33)
175 1wt6_A Myotonin-protein kinase 52.5 50 0.0017 22.2 7.9 38 62-99 34-71 (81)
176 3mq9_A Bone marrow stromal ant 51.8 1E+02 0.0035 25.5 10.7 16 88-103 444-459 (471)
177 2er8_A Regulatory protein Leu3 51.7 8.9 0.0003 23.9 2.2 22 43-64 47-68 (72)
178 3iox_A AGI/II, PA; alpha helix 51.0 65 0.0022 28.4 8.2 54 47-100 36-93 (497)
179 2ve7_C Kinetochore protein NUF 50.9 21 0.00073 28.2 4.9 34 64-97 146-179 (250)
180 1deb_A APC protein, adenomatou 50.7 42 0.0014 20.8 6.9 31 70-100 7-37 (54)
181 1x8y_A Lamin A/C; structural p 50.6 52 0.0018 21.8 9.7 54 44-97 27-80 (86)
182 3w03_C DNA repair protein XRCC 50.3 71 0.0024 24.4 7.5 31 66-96 152-182 (184)
183 2wq1_A General control protein 50.1 33 0.0011 19.3 4.4 24 71-94 5-28 (33)
184 3he4_A Synzip6; heterodimeric 49.5 36 0.0012 20.8 4.6 29 49-77 21-49 (56)
185 2e62_A Protein AT5G25060; CWF2 48.6 50 0.0017 21.1 7.9 16 11-26 1-16 (61)
186 3m0d_C TNF receptor-associated 48.3 49 0.0017 20.8 9.1 57 43-99 4-60 (65)
187 1wle_A Seryl-tRNA synthetase; 48.0 1.4E+02 0.0047 26.0 12.3 56 50-105 82-148 (501)
188 3u59_A Tropomyosin beta chain; 46.7 64 0.0022 21.7 12.6 11 88-98 87-97 (101)
189 2wt7_B Transcription factor MA 46.6 66 0.0023 21.9 9.2 56 37-99 29-88 (90)
190 1joc_A EEA1, early endosomal a 46.4 73 0.0025 22.3 9.4 40 46-85 12-51 (125)
191 3o0z_A RHO-associated protein 45.9 95 0.0032 23.5 11.5 42 48-89 37-78 (168)
192 3ghg_A Fibrinogen alpha chain; 45.7 85 0.0029 28.0 8.2 43 63-105 114-156 (562)
193 1deq_A Fibrinogen (alpha chain 45.6 1.4E+02 0.0049 25.4 9.9 43 63-105 117-159 (390)
194 3plt_A Sphingolipid long chain 44.6 83 0.0029 25.0 7.3 62 28-94 97-159 (234)
195 3swy_A Cyclic nucleotide-gated 44.5 50 0.0017 19.8 7.0 42 49-93 2-43 (46)
196 4dzo_A Mitotic spindle assembl 42.7 62 0.0021 23.0 5.8 21 46-66 5-25 (123)
197 3oa7_A Head morphogenesis prot 42.6 1.2E+02 0.0041 23.7 7.9 39 55-93 33-71 (206)
198 3he4_A Synzip6; heterodimeric 42.4 13 0.00044 22.8 1.8 26 75-100 26-51 (56)
199 2fxo_A Myosin heavy chain, car 42.1 87 0.003 22.0 10.9 21 77-97 73-93 (129)
200 1joc_A EEA1, early endosomal a 42.1 87 0.003 21.9 7.0 17 80-96 18-34 (125)
201 3trt_A Vimentin; cytoskeleton, 42.0 64 0.0022 20.4 7.4 6 31-36 24-29 (77)
202 2v4h_A NF-kappa-B essential mo 41.9 90 0.0031 22.1 9.1 45 53-97 63-107 (110)
203 2dq3_A Seryl-tRNA synthetase; 41.7 1.6E+02 0.0054 24.8 9.2 58 48-105 33-100 (425)
204 3q8t_A Beclin-1; autophagy, AT 41.4 80 0.0027 21.3 12.7 22 49-70 8-29 (96)
205 2xdj_A Uncharacterized protein 39.9 81 0.0028 21.0 9.4 51 50-100 4-54 (83)
206 2eqb_B RAB guanine nucleotide 39.8 91 0.0031 21.5 10.5 20 53-72 41-60 (97)
207 2zvf_A Alanyl-tRNA synthetase; 39.2 20 0.00068 25.9 2.8 25 73-97 32-56 (171)
208 2ve7_A Kinetochore protein HEC 39.1 44 0.0015 27.2 5.1 20 74-93 186-205 (315)
209 3mud_A DNA repair protein XRCC 39.0 1.3E+02 0.0043 22.9 8.1 21 49-69 132-152 (175)
210 2efr_A General control protein 39.0 1.2E+02 0.004 22.5 10.3 63 29-91 54-116 (155)
211 4b4t_K 26S protease regulatory 38.7 62 0.0021 27.4 6.1 24 77-100 60-83 (428)
212 1wt6_A Myotonin-protein kinase 38.6 88 0.003 21.0 9.7 59 32-93 14-72 (81)
213 2j5u_A MREC protein; bacterial 38.4 17 0.00059 28.7 2.5 16 52-67 26-41 (255)
214 4ath_A MITF, microphthalmia-as 38.3 89 0.003 21.0 6.5 17 77-93 60-76 (83)
215 3lay_A Zinc resistance-associa 38.1 1.1E+02 0.0039 22.9 7.0 21 73-93 113-133 (175)
216 2dq0_A Seryl-tRNA synthetase; 37.2 1.9E+02 0.0066 24.5 14.0 54 50-103 36-99 (455)
217 2dq0_A Seryl-tRNA synthetase; 37.2 1.6E+02 0.0054 25.1 8.5 76 31-106 9-95 (455)
218 3ghg_A Fibrinogen alpha chain; 36.9 1.7E+02 0.0059 26.0 8.7 51 40-90 105-155 (562)
219 3q4f_C DNA repair protein XRCC 36.6 37 0.0013 26.2 4.0 21 46-66 162-182 (186)
220 1g6u_A Domain swapped dimer; d 35.7 69 0.0024 18.9 6.5 26 74-99 21-46 (48)
221 3tnu_B Keratin, type II cytosk 35.6 1.1E+02 0.0038 21.3 10.8 8 81-88 90-97 (129)
222 1hlo_A Protein (transcription 35.0 89 0.003 20.0 5.2 58 37-94 21-78 (80)
223 2yko_A LINE-1 ORF1P; RNA-bindi 34.7 1.1E+02 0.0038 24.2 6.6 42 47-95 8-49 (233)
224 3bas_A Myosin heavy chain, str 34.4 1E+02 0.0034 20.4 11.3 45 46-90 15-59 (89)
225 1wlq_A Geminin; coiled-coil; 2 34.3 1.1E+02 0.0036 20.7 8.3 18 47-64 47-64 (83)
226 4ath_A MITF, microphthalmia-as 34.3 1E+02 0.0036 20.6 5.8 30 44-73 48-77 (83)
227 2l5g_B Putative uncharacterize 34.2 74 0.0025 18.8 5.6 30 72-101 8-37 (42)
228 2v66_B Nuclear distribution pr 33.7 1.2E+02 0.0042 21.3 14.0 38 51-88 34-71 (111)
229 1gk4_A Vimentin; intermediate 33.0 1E+02 0.0035 20.1 10.6 52 45-96 26-77 (84)
230 3q0x_A Centriole protein; cent 32.7 1.8E+02 0.0062 22.8 8.5 41 25-71 164-204 (228)
231 2zvf_A Alanyl-tRNA synthetase; 32.5 79 0.0027 22.6 5.1 26 49-74 29-54 (171)
232 3bbp_D GRIP and coiled-coil do 32.5 54 0.0018 21.5 3.7 34 66-99 29-62 (71)
233 4b4t_K 26S protease regulatory 32.2 1.1E+02 0.0038 25.8 6.7 46 48-100 45-90 (428)
234 3fx0_A NF-kappa-B essential mo 32.2 24 0.00081 24.5 2.0 17 42-58 35-51 (96)
235 1uii_A Geminin; human, DNA rep 31.9 1.2E+02 0.004 20.4 7.7 9 81-89 47-55 (83)
236 2oto_A M protein; helical coil 31.6 1.4E+02 0.0049 21.3 11.3 23 71-93 55-77 (155)
237 3bbp_D GRIP and coiled-coil do 31.3 52 0.0018 21.6 3.4 13 78-90 48-60 (71)
238 2ocy_A RAB guanine nucleotide 31.2 1.6E+02 0.0055 21.8 11.4 28 80-107 108-135 (154)
239 1uix_A RHO-associated kinase; 31.1 1.1E+02 0.0038 19.9 8.4 30 50-79 2-31 (71)
240 3he5_B Synzip2; heterodimeric 31.1 88 0.003 18.8 7.3 13 85-97 29-41 (52)
241 3na7_A HP0958; flagellar bioge 30.5 1.9E+02 0.0064 22.3 14.4 51 45-95 90-140 (256)
242 3oa7_A Head morphogenesis prot 30.3 1.5E+02 0.005 23.2 6.5 40 61-100 32-71 (206)
243 2l5g_A GPS2 protein, G protein 30.3 74 0.0025 18.4 3.6 18 46-63 16-33 (38)
244 2z5i_A TM, general control pro 30.0 95 0.0032 18.8 6.5 34 34-67 8-41 (52)
245 1s1c_X RHO-associated, coiled- 28.6 1.2E+02 0.0042 19.7 7.7 31 49-79 3-33 (71)
246 2fxo_A Myosin heavy chain, car 28.5 1.5E+02 0.0052 20.7 11.5 58 47-104 64-121 (129)
247 4ati_A MITF, microphthalmia-as 27.6 1E+02 0.0035 21.5 4.8 66 23-92 35-110 (118)
248 1fxk_C Protein (prefoldin); ar 27.4 1.5E+02 0.0052 20.3 6.5 19 51-69 101-119 (133)
249 2p22_A Suppressor protein STP2 27.4 1.7E+02 0.0057 22.1 6.2 26 83-108 111-136 (174)
250 1zxa_A CGMP-dependent protein 27.3 1.1E+02 0.0039 19.6 4.6 31 74-104 26-56 (67)
251 1m1j_B Fibrinogen beta chain; 27.1 3.1E+02 0.01 23.7 10.2 24 83-106 171-194 (464)
252 3htk_B Structural maintenance 26.7 1.2E+02 0.0042 19.1 10.5 60 46-107 5-66 (73)
253 2wg5_A General control protein 26.6 55 0.0019 22.5 3.2 25 77-101 11-35 (109)
254 2aze_A Transcription factor DP 26.4 2E+02 0.0069 21.4 7.1 18 41-58 22-39 (155)
255 2i1j_A Moesin; FERM, coiled-co 25.3 63 0.0022 28.4 4.0 42 47-88 337-378 (575)
256 3tnu_A Keratin, type I cytoske 24.3 1.8E+02 0.0063 20.2 10.1 15 76-90 87-101 (131)
257 2no2_A HIP-I, huntingtin-inter 24.0 1.8E+02 0.0061 20.0 11.1 33 67-99 69-101 (107)
258 2gkw_A TNF receptor-associated 23.8 1.7E+02 0.0057 21.4 5.7 9 50-58 5-13 (192)
259 2q6q_A Spindle POLE BODY compo 23.6 1.6E+02 0.0055 19.2 9.1 47 48-94 6-52 (74)
260 1hwt_C Protein (heme activator 23.4 50 0.0017 20.6 2.3 22 43-64 56-77 (81)
261 3mud_A DNA repair protein XRCC 23.0 2.3E+02 0.0078 21.5 6.3 34 36-69 133-166 (175)
262 3q4f_C DNA repair protein XRCC 22.6 1.8E+02 0.0062 22.3 5.7 28 46-73 155-182 (186)
263 2xu6_A MDV1 coiled coil; prote 22.2 1.7E+02 0.0059 19.1 6.3 38 63-100 32-69 (72)
264 4b4t_J 26S protease regulatory 21.7 1.2E+02 0.0043 25.5 5.1 21 79-99 45-65 (405)
265 2fic_A Bridging integrator 1; 21.7 2.6E+02 0.0088 20.9 10.2 27 65-94 185-211 (251)
266 3gpv_A Transcriptional regulat 21.5 2.2E+02 0.0075 20.1 6.3 26 81-106 103-128 (148)
267 3viq_A SWI5-dependent recombin 21.2 2.1E+02 0.0072 20.2 5.5 25 50-74 5-29 (122)
268 3coq_A Regulatory protein GAL4 21.0 1.1E+02 0.0036 19.2 3.6 22 44-65 44-65 (89)
269 3kin_B Kinesin heavy chain; mo 20.9 2E+02 0.0068 19.9 5.3 22 75-96 91-112 (117)
270 3duz_A GP67, major envelope gl 20.7 2.5E+02 0.0084 24.4 6.6 32 75-106 286-317 (487)
271 3jsv_C NF-kappa-B essential mo 20.2 2.2E+02 0.0074 19.5 8.9 47 47-93 4-53 (94)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.62 E-value=5.3e-16 Score=100.23 Aligned_cols=52 Identities=33% Similarity=0.517 Sum_probs=48.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRY 75 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~ 75 (145)
|+.+|+++||+||++||.||++|+++||.+|..|+.+|..|..++..|.+.|
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999999998877554
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.45 E-value=4.9e-13 Score=88.16 Aligned_cols=51 Identities=24% Similarity=0.414 Sum_probs=45.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 23 ERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQ 73 (145)
Q Consensus 23 eRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~ 73 (145)
||+++|+++||+||++||.||++++++|+.+|..|+.+|..|..++..|..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999888887765443
No 3
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.38 E-value=8.4e-13 Score=87.30 Aligned_cols=47 Identities=30% Similarity=0.386 Sum_probs=41.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 29 MISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRY 75 (145)
Q Consensus 29 ~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~ 75 (145)
...||+||++||.||++|+++|+.+|..|+.+|..|..++..|++.+
T Consensus 14 R~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 14 RARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999999999999999999999999999999998888776654
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.33 E-value=7.2e-12 Score=81.83 Aligned_cols=49 Identities=29% Similarity=0.381 Sum_probs=44.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
|+.+|+++||+||++||.||++++++|+.+|..|+.+|..|..++..|.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999988877543
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.26 E-value=1.7e-11 Score=80.32 Aligned_cols=48 Identities=21% Similarity=0.345 Sum_probs=43.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 25 KRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 25 r~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
+.+|..+||+||++||.||++++++|+.+|..|+.+|..|..++..|.
T Consensus 2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999988887544
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.19 E-value=7.1e-11 Score=79.65 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=48.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 26 RKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNIL 85 (145)
Q Consensus 26 ~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 85 (145)
.||+..||.|+|..|.||.+|+.+||.+|..|+..+..|..++..|...+..|..||..|
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 688999999999999999999999999999999988876655555555555555555443
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.10 E-value=3.2e-10 Score=74.72 Aligned_cols=59 Identities=34% Similarity=0.421 Sum_probs=45.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA 89 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~ 89 (145)
|+.+++..||.||.|||.||+++.++|+.++..|+.+|..|..++.. +..|+..|+.-+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~-------L~~E~~~Lk~ll 60 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADS-------LAKEIQYLKDLI 60 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999998887774 445666555544
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.75 E-value=7.5e-08 Score=67.26 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 20 NVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNID 69 (145)
Q Consensus 20 ~~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~ 69 (145)
..|++-..|..+|.++|++||.+++..-.+++.++..|+.||..|..+|.
T Consensus 11 k~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788999999999999999999999999887777776666555
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.70 E-value=1.2e-07 Score=65.03 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 21 VDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSS 71 (145)
Q Consensus 21 ~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l 71 (145)
.|+.-..|..+|.++|++||.+++....+++.++..|+.||..|..+|..|
T Consensus 12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQL 62 (78)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556667899999999999999999999999999888888887777643
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.42 E-value=6.3e-09 Score=75.25 Aligned_cols=64 Identities=25% Similarity=0.398 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
|.+||.++||.+|+.||.||.+..++||.++..|..+...| ..||..|+.++..+..++..|..
T Consensus 37 K~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L--------------~~En~~l~~E~~~lk~k~e~L~~ 100 (107)
T 3a5t_A 37 KQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKL--------------ASENASMKLELDALRSKYEALQN 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTT--------------TSTTSHHHHTTTSSSSCC-----
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999998887666554444 45566666666666555555543
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.21 E-value=1.1e-05 Score=56.60 Aligned_cols=48 Identities=29% Similarity=0.398 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 22 DERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNID 69 (145)
Q Consensus 22 deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~ 69 (145)
.-|.+||-++||.+|+-||.||.....+||.++..|..+...|..++.
T Consensus 25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~ 72 (90)
T 2wt7_B 25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVS 72 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336778999999999999999999999999988887776666654433
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.51 E-value=0.00033 Score=42.43 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA 89 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~ 89 (145)
|+|+.+||.++..|+.-|.+|..++.. +..||..||+-+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervst-------Lq~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLST-------LQNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHh
Confidence 589999999999999999988877764 679999999754
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=97.01 E-value=0.0065 Score=41.66 Aligned_cols=52 Identities=31% Similarity=0.369 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
-|.-++..|+.+|..|..++..+......+..||..|+.+......||+.|-
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666677777777777777777777788999999999999999988764
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.42 E-value=0.0013 Score=46.01 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 032187 22 DERKRKRMISNRESARRSRMKKQKQMEDLVN 52 (145)
Q Consensus 22 deRr~rR~~sNReSArrSR~RKq~~l~eLe~ 52 (145)
..|..||..+||.+|++||.||....+.|+.
T Consensus 60 ~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 60 LIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 3467789999999999999999999887763
No 15
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=96.04 E-value=0.033 Score=35.02 Aligned_cols=47 Identities=15% Similarity=0.363 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
.+.|-.+|+.|+.||..|+.++..-..++..++.|-.-+++-+..|.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 57899999999999999999999999999999999887776555443
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.59 E-value=0.21 Score=36.93 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 42 KKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSV 102 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i 102 (145)
+.+...+.|+.++..+..|+..|+.++..+..++..+..++..|+.++.+|..++..|..=
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888999999999999999999999999999999999999998888888877543
No 17
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.55 E-value=0.079 Score=34.32 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRV 87 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra 87 (145)
-+..-|++|.+|-+-|..|..++..+...++.+.+||..||.
T Consensus 21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 355568899999999999999999999999999999999984
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.43 E-value=0.31 Score=33.22 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
.-++.||.+|.++=....-|.-++..|+++...+..+|..++.....|......|..=.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 35788889888888888888888888888888888888886666665665555554433
No 19
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=94.88 E-value=0.093 Score=36.17 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 67 NIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 67 ~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
....+......|+.||..|++++..|...+..|..+|..+
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3345567788899999999999999999999999888543
No 20
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=94.77 E-value=0.12 Score=33.26 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 65 KQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQ 104 (145)
Q Consensus 65 ~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~ 104 (145)
......+......|..+|..|+.++..|...+..|..+|.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677788889999999999999999999999988874
No 21
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=94.66 E-value=0.19 Score=30.41 Aligned_cols=44 Identities=25% Similarity=0.224 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA 89 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~ 89 (145)
.+..||.+|+.|+.||..|...+---+..+.-++.|-+-||..+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999998877665556666666666666554
No 22
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=94.23 E-value=0.19 Score=32.18 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 66 QNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
..+..|...+..+..+|..|+.++..|...+..|..++..
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677788899999999999999999999999888753
No 23
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=93.93 E-value=0.24 Score=31.33 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 66 QNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
..+..|...+..++.+|..|+.++..|+..+..|..++
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777788888999999999999999988887765
No 24
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=93.55 E-value=0.46 Score=33.53 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRY 75 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~ 75 (145)
.+..|..++..|+.||..|+.++..|.-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888888776444
No 25
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=93.50 E-value=0.14 Score=34.60 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 67 NIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQ 104 (145)
Q Consensus 67 ~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~ 104 (145)
....+...+..|+.||..|+.++..|...+..|..+|.
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667788889999999999999998888877663
No 26
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=93.39 E-value=0.66 Score=32.82 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQ-------NIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~-------~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
-+||..++.++.||..|+. ++..|...+..|..||..|+.+-.
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888877776 455555555555566666555543
No 27
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=92.58 E-value=0.17 Score=29.00 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQ 73 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~ 73 (145)
+..||.+|..|-.+|..|..++..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567888888888888877777776553
No 28
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.47 E-value=1.3 Score=31.02 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR-SLNSVLQI 105 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~-~l~~i~~~ 105 (145)
+..+..|+.+++....+...|...+..-......++.++..+..++.+|+.-|= ..|.++..
T Consensus 11 re~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ 73 (97)
T 2eqb_B 11 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVAD 73 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777788888888888877777778888888888888888887654 35555543
No 29
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=92.15 E-value=0.3 Score=28.10 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQ 73 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~ 73 (145)
++..||.+|..|-.+|..|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4677888888877777777776665543
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.94 E-value=2.7 Score=30.82 Aligned_cols=48 Identities=8% Similarity=0.034 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
++..|+.+...+..++..++..+..+..++..+..++.+|..++..|.
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444445555555555555555555555555555444
No 31
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=91.75 E-value=0.4 Score=27.86 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQR 74 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~ 74 (145)
++..||.+|..|-.+|..|..++..|+..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 56788888888888888888877766543
No 32
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=91.70 E-value=0.8 Score=28.28 Aligned_cols=38 Identities=21% Similarity=0.106 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 51 VNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 51 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
+.++..|..-|..|..++..+...+..++.|+..|++=
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 56788889999999999999888888888888777653
No 33
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=91.67 E-value=0.3 Score=31.06 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 66 QNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
..+..|...+..+..+|..|+.++..|...+..|..+|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788889999999999999999888876655
No 34
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=91.52 E-value=0.73 Score=31.52 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 58 ESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 58 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
-.||..|...+..+...+..+..||..|+ +|..+.++|-++|..+
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~~L 81 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 35788888888888888888888888766 5677778888777543
No 35
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=91.41 E-value=0.44 Score=31.47 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 64 LKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 64 L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
|..++..+......+..||..|+.++..|...+..
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445556778888888888888777654
No 36
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=91.37 E-value=0.27 Score=28.62 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQR 74 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~ 74 (145)
++..||.+|..|-.+|..|..++..|+..
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46788888888888888888877766543
No 37
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=91.14 E-value=0.35 Score=26.69 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 73 QRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 73 ~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
..+..+++||..|++.+++|-.++
T Consensus 6 allasleaenkqlkakveellakv 29 (31)
T 1p9i_A 6 ALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667888888888888776543
No 38
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=90.95 E-value=0.72 Score=31.27 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 58 ESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 58 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
-.||..|..++..+...+..+..||..|+ ++.++.+.|-+|+..
T Consensus 33 L~EN~~Lh~~ie~~~eEi~~LkeEN~~L~----el~~~~~~laevl~~ 76 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIER 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 35888999999988888888888988774 666777777777754
No 39
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=90.94 E-value=1.1 Score=30.30 Aligned_cols=60 Identities=17% Similarity=0.198 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD----RLRSLNSVLQIW 106 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~----rl~~l~~i~~~~ 106 (145)
.+++..++..++.+|..|..++..+...+..-..+-..++.++..+.. +|..|+++-+-+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGL 71 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356677889999999999999999999988888877777777765444 444555555443
No 40
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=90.59 E-value=0.53 Score=26.99 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQ 73 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~ 73 (145)
++..||.+|..|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4677888888877777777777665543
No 41
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=90.58 E-value=2.1 Score=27.23 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=18.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 032187 29 MISNRESARRSRMKKQKQMEDLVN 52 (145)
Q Consensus 29 ~~sNReSArrSR~RKq~~l~eLe~ 52 (145)
.-+||.++|+||.|=+..++....
T Consensus 6 ryknr~asrk~rakfkn~lqh~r~ 29 (63)
T 2c9l_Y 6 RYKNRVAARKSRAKFKQLLQHYRE 29 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999998877665443
No 42
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.82 E-value=5.4 Score=38.01 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 73 QRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 73 ~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
++...++.||..|+.++.+|...+...
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667777777777766544433
No 43
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=89.62 E-value=1.3 Score=28.13 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 51 VNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 51 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
|.++..|+..|-.|..++..|...+...+.|+..|.+-
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888877777777777766543
No 44
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=89.50 E-value=0.022 Score=39.66 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 032187 24 RKRKRMISNRESARRSRMKKQK 45 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq~ 45 (145)
|..||.-+||.+|++||.||..
T Consensus 66 rdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 66 RDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 5668999999999999999853
No 45
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=89.47 E-value=0.75 Score=26.22 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQ 73 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~ 73 (145)
+..||.+|..|-.+|..|..++..++.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 567777887777777777766665543
No 46
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=89.24 E-value=1.5 Score=34.65 Aligned_cols=45 Identities=13% Similarity=0.281 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 58 ESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 58 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
-.||..|..+|..+...+..+..||..|+ +|..++++|-++|..+
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLk----eLae~~q~la~vi~~l 158 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELA----EVAEHVQYMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 35788888888877777777777777665 5666677777777665
No 47
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=88.43 E-value=0.88 Score=26.10 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQ 73 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~ 73 (145)
++..||.+|..|-.+|..|..++..|..
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4667888888888888877777766543
No 48
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=88.25 E-value=1 Score=27.01 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNI 68 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~ 68 (145)
.....+||.+|+.|+.||..|++-+
T Consensus 16 e~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4567899999999999999988654
No 49
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=88.14 E-value=0.78 Score=26.34 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
++..||.+|..|-.+|..|..++..++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 466788888887777777777766554
No 50
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=88.10 E-value=2 Score=28.70 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
.++.+||.+++-++.-...|...+. .-..+-..|..++..|..|+..+.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~-------~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALA-------DARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566666666666665555554444 344455555666666666666553
No 51
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=87.75 E-value=0.85 Score=26.18 Aligned_cols=28 Identities=7% Similarity=0.124 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQ 73 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~ 73 (145)
++..||.+|..|-.+|..|..++..++.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888888888888877777776553
No 52
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=87.58 E-value=1.2 Score=25.38 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQ 73 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~ 73 (145)
+..||.+|..|-.+|..|..++..++.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567888888888888777777766543
No 53
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=87.56 E-value=4.9 Score=27.12 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEM 78 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l 78 (145)
-+|..++..|+.|...|+..++.+...+..+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4444555555555555555444443333333
No 54
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=87.19 E-value=5.2 Score=26.99 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
-.....+|+.+...|..+...|..++..+...+..+......|-.++.+|.+||.
T Consensus 33 ~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 33 TERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344556777777777777777766666667777777777777777777766653
No 55
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=87.14 E-value=6.8 Score=29.45 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
.-+..|..|...|..+++.+..+...+..||..|-..
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555666666555444
No 56
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.93 E-value=5.1 Score=28.99 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
.|+.+.++-+...++|..+|..|.+++....+|=..||.+...|..|+.
T Consensus 61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 3444333334445555555555555555555555555555555555544
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.78 E-value=8.1 Score=33.04 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
+.+..++.+.+.++.+++.+..+++...+.+..++.|...|+.++.+-.+++..
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 562 (597)
T 3oja_B 509 KVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAE 562 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHH
Confidence 344455556666666666666666666666666666666666655544444443
No 58
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=86.76 E-value=5.8 Score=27.11 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQR 74 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~ 74 (145)
..-.+|..|+.+|..|..++..+.+.
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33457888888888888777766543
No 59
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=86.61 E-value=2.5 Score=28.20 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
+|+.++..|+......-.. +..|...=..-..++..|+.++..|..=+..+.
T Consensus 11 ~le~Ri~~LE~klAfqE~t-------IeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQA-------LTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555444443333 333333333444556777888877766555543
No 60
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=86.29 E-value=1.2 Score=28.53 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 66 QNIDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
..+..|..++..|..+|..|+.++..|+..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777778889999998888887655
No 61
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=86.24 E-value=1.5 Score=25.45 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 58 ESANAMLKQNIDSSVQRYVEMESANNILR 86 (145)
Q Consensus 58 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr 86 (145)
-.||.+|...+..-.+.+..+..||..|.
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 36889999999988888888888888775
No 62
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=86.22 E-value=5.5 Score=26.36 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD----RLRSLNSVLQIW 106 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~----rl~~l~~i~~~~ 106 (145)
.++..++..++.+|..|..++..+.+.+..-..+-..++.++..+.. +|..|+++-+-+
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNL 65 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35778899999999999999999999988888877777777765444 444565555443
No 63
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=86.00 E-value=6 Score=26.57 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSV-------QRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~-------~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
.++-.+|..|-.||.+|...-+.+. .+...+.+|+.+|+.++..+..-...+
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4566788889999998887665544 566677777777777776655444433
No 64
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=84.98 E-value=0.6 Score=31.40 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 62 AMLKQNIDSSVQRYVEMESANNILRV 87 (145)
Q Consensus 62 ~~L~~~~~~l~~~~~~l~~EN~~Lra 87 (145)
..|+.+|..|..+...|+.||..||.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566667766654
No 65
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=84.90 E-value=8 Score=27.23 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
-..+.+|+.+|..|..||+.|+.+.....
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788999999999999999988877654
No 66
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=84.07 E-value=1.8 Score=28.66 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 77 EMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 77 ~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
.|..++..|..++.+|..+...|
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333
No 67
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=84.03 E-value=6.4 Score=26.15 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
.++.+=+.++..|+....-=......|...+-.+..||..|...+..|.+
T Consensus 25 ~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 25 KELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 34444555555555555554555556666677788899998888776653
No 68
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=83.21 E-value=3.1 Score=25.78 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNI 68 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~ 68 (145)
.+..|+.||..|+.++
T Consensus 20 d~eaLk~E~~eLk~k~ 35 (53)
T 2yy0_A 20 EIELLRLELAEMKEKY 35 (53)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 69
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=82.95 E-value=3.2 Score=25.75 Aligned_cols=28 Identities=4% Similarity=0.033 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 74 RYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 74 ~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
.+..|..||..|++++.+|..++..|..
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666665555544
No 70
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=82.32 E-value=11 Score=27.25 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 74 RYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 74 ~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
++..+..|+..|..++.+....+..|..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666665555555543
No 71
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=82.30 E-value=6.7 Score=24.22 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQN 67 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~ 67 (145)
+|..++..|...|..|...
T Consensus 13 ~l~~~l~~L~~rN~rL~~~ 31 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMET 31 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 72
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=82.13 E-value=2.4 Score=34.30 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 77 EMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 77 ~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
.+...|..|.+.+.+++.+|..|.+-+..
T Consensus 65 ~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 65 SLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 73
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=81.93 E-value=11 Score=26.56 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSS 71 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l 71 (145)
.++.+|..+|..+..+|..|..++..+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~ 46 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNL 46 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444443
No 74
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=81.90 E-value=10 Score=29.43 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcCC
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR----SLNSVLQIWAEISGI 112 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~----~l~~i~~~~~~~~g~ 112 (145)
++++.-..-|..|..||..|..++......+..|..+=+.|+.+...+...+. .+.-+....+..+|+
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl 84 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNV 84 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCc
Confidence 33444444566666666666666665554454444444444444433333333 333333334555675
No 75
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=81.68 E-value=9.6 Score=25.57 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 40 RMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSV 102 (145)
Q Consensus 40 R~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i 102 (145)
|+|=++.+..-..++..|..-...|..--..+..-+..+..|-..|...+.-|.++..-|..+
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888888888888888888888888888888999999999998888888777554
No 76
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.50 E-value=16 Score=27.86 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=41.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 28 RMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 28 R~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
.+..-=+.=|+.|.+-.+.+.+|+.++..|..|...++.. +..+..||..|-..+..|...-.++
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~-------~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN-------LEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445556777777777777777777766666665544 4456677777777776666554443
No 77
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=81.43 E-value=3.6 Score=22.87 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSS 71 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l 71 (145)
+..|+.+|++.+.||-+|..++..+
T Consensus 3 vaqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456666666666666665555544
No 78
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=81.30 E-value=1.9 Score=26.88 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 67 NIDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 67 ~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
.+..|...+..|+.||..|+.++..|...+
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666667778889998888888877543
No 79
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=81.04 E-value=2.8 Score=23.03 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
++.|..-++.|+.||.+|+.++..+-
T Consensus 1 mdqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788899999999998887653
No 80
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=80.95 E-value=2 Score=28.84 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQ 66 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~ 66 (145)
.++.+|+.++.+|+.||.-|+.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666654
No 81
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=80.84 E-value=5.4 Score=27.15 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 59 SANAMLKQNIDSSVQRYVEMESANNILRV 87 (145)
Q Consensus 59 ~eN~~L~~~~~~l~~~~~~l~~EN~~Lra 87 (145)
.||..|...+..+...+..+..+|..|+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777666656566666665554
No 82
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=80.44 E-value=10 Score=26.75 Aligned_cols=13 Identities=46% Similarity=0.767 Sum_probs=7.8
Q ss_pred ChHHHHHHHHHHh
Q 032187 20 NVDERKRKRMISN 32 (145)
Q Consensus 20 ~~deRr~rR~~sN 32 (145)
..+||=+|-|++|
T Consensus 6 EvEEKyrKAMVsn 18 (103)
T 4h22_A 6 EVEEKYKKAMVSN 18 (103)
T ss_dssp --CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3466667777776
No 83
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=80.41 E-value=3.6 Score=23.49 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 68 IDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 68 ~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
.+.|..+...+..+|..|..++..|+.-|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34556667777888888888877776544
No 84
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=80.14 E-value=4.9 Score=26.66 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 032187 83 NILRVQAMELTDRL 96 (145)
Q Consensus 83 ~~Lra~~~~L~~rl 96 (145)
..|+.+...|..+|
T Consensus 64 ~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 64 DQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 85
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=79.80 E-value=3.5 Score=23.62 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 66 QNIDSSVQRYVEMESANNILRVQAMEL 92 (145)
Q Consensus 66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L 92 (145)
.++....+.+..+..+|..|.+++-+|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 333344444455556666666665443
No 86
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=79.70 E-value=4 Score=23.33 Aligned_cols=27 Identities=4% Similarity=0.156 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~ 72 (145)
++..||.+|..|-.++..|..++..+.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 466788888887777777777666554
No 87
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.58 E-value=15 Score=34.97 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 54 INHLESANAMLKQNIDSSVQRYVEMES 80 (145)
Q Consensus 54 v~~L~~eN~~L~~~~~~l~~~~~~l~~ 80 (145)
|..|+.++..+..++..+......++.
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee 1012 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEE 1012 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 88
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=79.44 E-value=2.6 Score=24.01 Aligned_cols=28 Identities=18% Similarity=0.075 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 69 DSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 69 ~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
+.|..+...+..+|..|..++..|++-|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3455677778888888888888776543
No 89
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=79.28 E-value=19 Score=34.20 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 74 RYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 74 ~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
.+..+..+...|..++.++..++.
T Consensus 914 ~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 914 MRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 90
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.24 E-value=18 Score=27.15 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
.+..|+.++..|+.++..|...+..-...+..+..|...|..++..+.+++..|
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kL 122 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDL 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333444444444444444444444444433
No 91
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.79 E-value=15 Score=26.13 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=48.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 29 MISNRESARRSRMKKQKQMEDLVNEINHLES---ANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 29 ~~sNReSArrSR~RKq~~l~eLe~~v~~L~~---eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
+..|=.+|-..=..|+..+++|..++..++. ....|..++......+..-.+.=..+-.+..+|...|..|
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence 4456667777778899999999999999888 6667888888877766554443333444444444444433
No 92
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=78.57 E-value=25 Score=30.69 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=34.6
Q ss_pred HhHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 032187 31 SNRESA-RRSRMKKQ-------KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMES-----------ANNILRVQAME 91 (145)
Q Consensus 31 sNReSA-rrSR~RKq-------~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~-----------EN~~Lra~~~~ 91 (145)
.|-+.- +..+.|+- ..+-+|..+...+..+...|+.+.+.+...+..+.. +-..|++++.+
T Consensus 48 ~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (501)
T 1wle_A 48 AYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGRE 127 (501)
T ss_dssp HSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHH
Confidence 566664 33344432 233344444444444444444444444444333221 22355555555
Q ss_pred HHHHHHHHHHHHHH
Q 032187 92 LTDRLRSLNSVLQI 105 (145)
Q Consensus 92 L~~rl~~l~~i~~~ 105 (145)
|.+++..|..-+..
T Consensus 128 l~~~i~~l~~~~~~ 141 (501)
T 1wle_A 128 IRKQLTLLYPKEAQ 141 (501)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555443333
No 93
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=78.20 E-value=10 Score=23.71 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
+.++...+..|+.+...++..+....+.|..+..=.-.|-.+++..+.-|.
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 345667778888888888888887777888888877778888777765543
No 94
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.18 E-value=31 Score=29.37 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQ 104 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~ 104 (145)
..+..++...+.+..++....+.......+-..|+.+..++..+++.....+.
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 509 KVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 33333333444444444433333333334444444445555555554444443
No 95
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=77.72 E-value=1.6 Score=23.54 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 78 MESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 78 l~~EN~~Lra~~~~L~~rl~~l 99 (145)
++-||..|...++.|..++.+|
T Consensus 5 lefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHh
Confidence 3444555555554554444443
No 96
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=77.39 E-value=23 Score=27.51 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
..+|+.++..|..+|..|...++.+..++..+..+-..+..+
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~ 175 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETD 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777776666666665544444333
No 97
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=77.27 E-value=15 Score=25.40 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=49.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 30 ISNRESARRSRMKKQKQMEDLVNEINHLE---SANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 30 ~sNReSArrSR~RKq~~l~eLe~~v~~L~---~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
..|-.+|-..=..|+..+++|...+..++ ..+..|..++......+..-.+.=..+..+..+|..+|..|.
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35566777777789999999999888888 566778888888877776655555555555555555555443
No 98
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=77.21 E-value=13 Score=24.41 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 75 YVEMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 75 ~~~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
+..|..-+..|..++.....+|...+.-|
T Consensus 43 v~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 43 LVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444333
No 99
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.03 E-value=14 Score=27.72 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032187 73 QRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAE 108 (145)
Q Consensus 73 ~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~ 108 (145)
...+.++..|..|+.++.+-...|..+..-+..++.
T Consensus 108 ~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 108 KEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566667777777777777777777766666544
No 100
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=76.83 E-value=14 Score=24.60 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSS------VQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l------~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
+..++.|+.++..|+.+...|...+..- -..+..+..+-..+..++..+-.|-..|..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568999999999999999999888642 134556666777777777777766655543
No 101
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=76.36 E-value=2.6 Score=26.29 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 73 QRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 73 ~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
..|..+..||..|+.++..|..+
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555555555554443
No 102
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=75.97 E-value=3.3 Score=22.27 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQRYVEM 78 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~~~~l 78 (145)
..|+.||..|.+.+..+++++..+
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 467888888888888888777655
No 103
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.88 E-value=14 Score=31.21 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 58 ESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 58 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
+.+...|..+...+.+.+..++.++..|.+++.+-..
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 45 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET 45 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444455555555555544333
No 104
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=75.44 E-value=7.9 Score=26.03 Aligned_cols=8 Identities=13% Similarity=0.189 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 032187 45 KQMEDLVN 52 (145)
Q Consensus 45 ~~l~eLe~ 52 (145)
..+..|..
T Consensus 23 ~~f~~Lr~ 30 (88)
T 1nkp_A 23 RSFFALRD 30 (88)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 34444444
No 105
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=75.41 E-value=7.4 Score=27.26 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 66 QNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
.++..++..+..|+.||..|+.++..|..+|..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888999999999999988888754
No 106
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=75.19 E-value=1.5 Score=34.91 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 032187 58 ESANAMLKQNID 69 (145)
Q Consensus 58 ~~eN~~L~~~~~ 69 (145)
..||++|+.++.
T Consensus 25 ~~eN~~Lk~e~~ 36 (255)
T 2j5u_A 25 YTENQHLKERLE 36 (255)
T ss_dssp -CTTTTHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 107
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=74.70 E-value=6 Score=26.18 Aligned_cols=72 Identities=10% Similarity=0.146 Sum_probs=40.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 27 KRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 27 rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
.|+...-.+-|+-|.+=...+.+|..-|...... ..=..-+..+...+..|..++..|..+...|...++..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k-~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAK-LNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555666666666667777777766432000 00011122333455667777777777777777766654
No 108
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=74.54 E-value=3.7 Score=25.57 Aligned_cols=29 Identities=3% Similarity=0.110 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQ 73 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~ 73 (145)
..|+.+...+..|..+|..|..++..+.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788888888888888888888876654
No 109
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=74.54 E-value=6.8 Score=22.34 Aligned_cols=29 Identities=7% Similarity=-0.048 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 68 IDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 68 ~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
.+.|..+...+..+|..|..++..|+.-|
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34556667778888888888887776544
No 110
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=74.03 E-value=12 Score=29.15 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
.+..|..++..|..++.....++..|.+++..+...=..+..+...-.+-+.-..+++..+
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~L 81 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYL 81 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHc
Confidence 4555666666666666655555555555555555544445444555555555555555554
No 111
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=73.74 E-value=36 Score=28.77 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 32 NRESARRSRMKK-----QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEME-SANNILRVQAMELTDRLRSLNSV 102 (145)
Q Consensus 32 NReSArrSR~RK-----q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~-~EN~~Lra~~~~L~~rl~~l~~i 102 (145)
|-+.-+.+-.++ -..+-+|..+...+..+...|+.+.+.+...+.... .+-..|++++.+|.+++..|..-
T Consensus 10 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (421)
T 1ses_A 10 EPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEA 86 (421)
T ss_dssp CHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333 244445555555555555555555555554432100 12234555555555555544433
No 112
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=73.71 E-value=22 Score=37.86 Aligned_cols=73 Identities=10% Similarity=0.148 Sum_probs=38.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 032187 27 KRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDS--------------SVQRYVEMESANNILRVQAMEL 92 (145)
Q Consensus 27 rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~--------------l~~~~~~l~~EN~~Lra~~~~L 92 (145)
.....+-+.|...=..+++.+.+|+.+++.|+.+-+.+..+... ....+..|..|+.+-.+++..|
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 34444445555555556666666666666555544433222222 2223344555666666666666
Q ss_pred HHHHHHH
Q 032187 93 TDRLRSL 99 (145)
Q Consensus 93 ~~rl~~l 99 (145)
..++..|
T Consensus 2097 ~~~~~~L 2103 (3245)
T 3vkg_A 2097 NTQMSTV 2103 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666553
No 113
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=73.50 E-value=7.9 Score=25.98 Aligned_cols=21 Identities=19% Similarity=0.563 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNID 69 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~ 69 (145)
+|-.+|..|..|+..|..++.
T Consensus 34 DLI~rvdELt~E~e~l~~El~ 54 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELE 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 333344444444443333333
No 114
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=73.49 E-value=9.5 Score=21.14 Aligned_cols=23 Identities=35% Similarity=0.294 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~ 72 (145)
|..++..|..|...|+-++..++
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 115
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=73.18 E-value=38 Score=32.24 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
+++.++..|+.+...+..++......+..++.+-..|..+..+|..++..+..
T Consensus 882 ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ 934 (1184)
T 1i84_S 882 ELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEA 934 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444433333333333333333344444444444444444444443
No 116
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=73.11 E-value=7.8 Score=21.96 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 69 DSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 69 ~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
+.+..+...+..+|..|..++..|..-|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455667778888888888887776544
No 117
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.73 E-value=39 Score=28.18 Aligned_cols=51 Identities=20% Similarity=0.100 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
..++.|-..+......+.+....+..||..|+..+.++...+...+..+..
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 334444444555556666677777788888888888888777766655544
No 118
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=72.16 E-value=6.9 Score=22.79 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 66 QNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 66 ~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
.++.....+...++.+|..|..++.
T Consensus 13 drlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 13 DRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444566677777777766653
No 119
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=71.78 E-value=21 Score=24.41 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
...+.++.++..++..+..+-.++..|..++..++.+=..+..++.
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555544444333333333
No 120
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=71.00 E-value=21 Score=28.17 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR---SLNSVLQIW 106 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~---~l~~i~~~~ 106 (145)
+.=.|.++..|+.+|..|..++..+ .....+|..+-.++..|.-+|- ++.+++..+
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~L----i~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L 125 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQL----MDVARENDRLFDKTRRLVLDLLDATSLEDVVSTV 125 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4455678888888888888887754 4667899999999999998887 566666665
No 121
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=70.89 E-value=17 Score=30.92 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
..|+.|...++.++..+.+....+..|+..+.+++.......+.|.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~ 51 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELH 51 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555666777777777655444444433
No 122
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=70.67 E-value=2.6 Score=30.14 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDS 70 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~ 70 (145)
.-+++|..++..|+-||..|+.++..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999873
No 123
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=70.29 E-value=18 Score=30.65 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
.+.+|..++..|+.++..+..++..+.+++...+.+...|--++.+|.
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444555555555555555554444444444444433343333
No 124
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.77 E-value=21 Score=30.10 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEME 79 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~ 79 (145)
..+..|+.++..|+.+++.+..++..+.+++...+
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555554444444444333
No 125
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=69.56 E-value=6.9 Score=31.64 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDS 70 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~ 70 (145)
.+.+|+.++..|...|..|...+..
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ 79 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKE 79 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655555555554443
No 126
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=69.39 E-value=12 Score=21.58 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 69 DSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 69 ~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
+.|..+...|..+|..|..++..|+.-+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3444555566677777777766665544
No 127
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=69.39 E-value=57 Score=28.41 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 78 MESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 78 l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
+..|=..|+.++.+|...+..+..-+
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554434
No 128
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=68.93 E-value=25 Score=24.06 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
+-..+..|..++..|+.+...+...+......+...+..-..--+++..|..|++.|
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333333333332222222222233555666666544
No 129
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=68.70 E-value=11 Score=25.58 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032187 74 RYVEMESANNILRVQAM 90 (145)
Q Consensus 74 ~~~~l~~EN~~Lra~~~ 90 (145)
+...|+.+|..|..++.
T Consensus 24 KVR~LEqqN~~Le~~i~ 40 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELE 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444443333
No 130
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=68.42 E-value=25 Score=23.94 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 41 MKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 41 ~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
.+-.+.|.+|+.+-..+..+...+..+...+...-.....+=+.++.++.++.+.+.+|+.-+.+.
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555555666777777888888888888766664
No 131
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=68.35 E-value=18 Score=22.23 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 75 YVEMESANNILRVQAMELTDRLRSLNSVLQ 104 (145)
Q Consensus 75 ~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~ 104 (145)
...+...|..|-+-+.+-+++|..|.+.++
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444454444455555555544443
No 132
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=68.22 E-value=9.8 Score=25.18 Aligned_cols=27 Identities=7% Similarity=0.011 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSS 71 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l 71 (145)
.|+..|+.+...|..++..|..++..|
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444444433
No 133
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=67.01 E-value=31 Score=24.44 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
+..|+.++..|+..+..|...+..|.+..+.++....+.-+-+..+..++..
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ 88 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQ 88 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHH
Confidence 4445566666666666666666665555555555555555556666666554
No 134
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=66.99 E-value=37 Score=26.62 Aligned_cols=50 Identities=8% Similarity=0.111 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032187 64 LKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGIN 113 (145)
Q Consensus 64 L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~~g~~ 113 (145)
...++..|...+..+..|.+.|+.+..+|..-...+..+..++....|-+
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~ 162 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEP 162 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44555556666666667777777777777777777777777777776643
No 135
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=66.16 E-value=29 Score=24.76 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 40 RMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 40 R~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
...-+.++.+|..+|..|+.+...-+. .......||..|++++..|...
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~-------~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQH-------LRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677777777776666655443 3445677888888888877543
No 136
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=65.88 E-value=6.1 Score=21.19 Aligned_cols=11 Identities=27% Similarity=0.320 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 032187 82 NNILRVQAMEL 92 (145)
Q Consensus 82 N~~Lra~~~~L 92 (145)
|+.|+.+++.|
T Consensus 9 narlkqeiaal 19 (28)
T 3ra3_B 9 NARLKQEIAAL 19 (28)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 33333333333
No 137
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=65.37 E-value=7.8 Score=23.87 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNI 68 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~ 68 (145)
..|++.|+.++..|+.....|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999998888887776543
No 138
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=64.46 E-value=14 Score=20.39 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 71 SVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 71 l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
+.......++||-.|..+++.|.+.
T Consensus 6 lekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 6 LEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3344556678888888888777653
No 139
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=63.76 E-value=9.4 Score=21.77 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 69 DSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 69 ~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
+.+..+...+..+|..|..++..|..-|
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4455667777888888888887776543
No 140
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=63.22 E-value=30 Score=23.04 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSV-------QRYV-------EMESANNILRVQA-------MELTDRLRSLNSVLQIW 106 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~-------~~~~-------~l~~EN~~Lra~~-------~~L~~rl~~l~~i~~~~ 106 (145)
.+|..++..+..+|..|..++..+. .+|. .++++=..||..+ .+|..++.+|.+=|.++
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665555554443 3332 3333444455444 25667777777766665
Q ss_pred H
Q 032187 107 A 107 (145)
Q Consensus 107 ~ 107 (145)
.
T Consensus 83 k 83 (86)
T 3swk_A 83 K 83 (86)
T ss_dssp T
T ss_pred h
Confidence 3
No 141
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.06 E-value=44 Score=24.48 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR-SLNSVLQI 105 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~-~l~~i~~~ 105 (145)
+++.|...+.....+...|...+..-...-...+.++..+..++.+|+.-|= ..|.++..
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ 93 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVAD 93 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666677777776666666667777888888888888887653 35555543
No 142
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=61.54 E-value=26 Score=21.62 Aligned_cols=29 Identities=0% Similarity=0.089 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQR 74 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~ 74 (145)
.+++|..+|..|......|...+..++..
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666555555555554443
No 143
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=61.28 E-value=31 Score=22.48 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
..|+.+......+...+...+...+..+..+-.++..|..+++.|.
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE 54 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333344444444444333
No 144
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=61.20 E-value=13 Score=21.21 Aligned_cols=27 Identities=7% Similarity=-0.052 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 69 DSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 69 ~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
+.+..+...+..+|..|..++..|..-
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345556667777888777777766553
No 145
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=60.63 E-value=36 Score=23.04 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMEL 92 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L 92 (145)
....+.++.++..++..+..+-.++..+..++..++.+=..+...+...
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666665555555544433333333333
No 146
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=60.07 E-value=36 Score=27.68 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 51 VNEINHLESANAMLKQNIDSSVQRYVEME 79 (145)
Q Consensus 51 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~ 79 (145)
+.+++.|+.+|+.|..++..+......+.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555666666666666665544443333
No 147
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=59.65 E-value=36 Score=22.67 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 032187 78 MESANNILRVQAMEL 92 (145)
Q Consensus 78 l~~EN~~Lra~~~~L 92 (145)
+..+|..|+.++.+|
T Consensus 71 L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 71 LRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344555555555444
No 148
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=59.49 E-value=47 Score=24.01 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEM 78 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l 78 (145)
.+|+.++..|+..|..|..++..+..++..+
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888888888777777777554
No 149
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.45 E-value=76 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNID 69 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~ 69 (145)
..+.++....++..|+.+|+.+...+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhh
Confidence 333333344444444444444433333
No 150
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=59.33 E-value=45 Score=23.73 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQN 67 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~ 67 (145)
..++.|..+|..|+.++..+..+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E 37 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTE 37 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665444
No 151
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=59.18 E-value=16 Score=21.03 Aligned_cols=26 Identities=19% Similarity=0.036 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 71 SVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 71 l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
|..+...+..+|..|..++..|+.-|
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 33444455566666666655555433
No 152
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=59.14 E-value=61 Score=25.18 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 37 RRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRY 75 (145)
Q Consensus 37 rrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~ 75 (145)
+..-...+..+++++.++..++.+...+..++.....+.
T Consensus 45 ~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 45 NKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555555555555544433
No 153
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=59.10 E-value=36 Score=22.53 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS 98 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~ 98 (145)
++||.+|..|+.-...|..++..|-. ...+-...|+.++..|..++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLa---Ey~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILA---EYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 45777777777777777666665433 3334456677777777776665
No 154
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=58.90 E-value=20 Score=20.40 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 69 DSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 69 ~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
+.|..+...|..+|..|..++..|+.-|
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3445556667777887777777666543
No 155
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=58.86 E-value=18 Score=27.77 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAML 64 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L 64 (145)
.++-+-..+..|+.+|..|
T Consensus 146 lid~~ld~~~~L~~~n~~L 164 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHL 164 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 156
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=58.82 E-value=90 Score=27.14 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 82 NNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 82 N~~Lra~~~~L~~rl~~l~~i~ 103 (145)
-..|+.++.+|...+..+..-+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~ 134 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEER 134 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444
No 157
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=58.37 E-value=36 Score=22.37 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNI 68 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~ 68 (145)
|...+.+|+.++.....++..|+.++
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 158
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=58.33 E-value=61 Score=24.91 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
..+..|+.+...|+.....+...+..++..|..|.-..-....-|
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sl 132 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSL 132 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence 345555555555555555555556666666655544443333333
No 159
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=57.94 E-value=23 Score=23.01 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 42 KKQKQMEDLVNEINHLESANAMLKQNID 69 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~~eN~~L~~~~~ 69 (145)
.|...+.+||..+..-..++.+|+.++.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888888777776666666665544
No 160
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=57.93 E-value=95 Score=27.01 Aligned_cols=61 Identities=8% Similarity=-0.049 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMES---ANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~---EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
.+-+|..+...+..+...|+.+.+.+...+..+.. +-..|.+++.+|.+++..|..-+..+
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~ 97 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEA 97 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666665555544432 23568888888888888887766655
No 161
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.73 E-value=47 Score=23.45 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRY 75 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~ 75 (145)
+..|+.++..+...+..|...+..+..++
T Consensus 47 iq~L~~el~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 47 MQNLEIELQSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544443
No 162
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=57.55 E-value=32 Score=22.31 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 75 YVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 75 ~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
...+..|...|+.+...|..+|.
T Consensus 56 ~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 56 NHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 163
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=57.49 E-value=69 Score=25.28 Aligned_cols=36 Identities=8% Similarity=0.082 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 67 NIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSV 102 (145)
Q Consensus 67 ~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i 102 (145)
++..+.+.+.....|++.+++++++.+..+..+.+-
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555555555555555443
No 164
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=57.35 E-value=1.3e+02 Score=32.27 Aligned_cols=58 Identities=9% Similarity=0.228 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
...+.++...+.+...+..++..++.+|.....|-..|+.++.....+|.....++.-
T Consensus 2024 ~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~g 2081 (3245)
T 3vkg_A 2024 NELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDN 2081 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455566666777777888888888888899999999999888888766666544
No 165
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=57.27 E-value=0.16 Score=35.25 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=17.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 032187 24 RKRKRMISNRESARRSRMKKQ 44 (145)
Q Consensus 24 Rr~rR~~sNReSArrSR~RKq 44 (145)
+..||.-+||.+|+++|.||.
T Consensus 66 rdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 66 RDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHhhhhHHHHHHcchhhc
Confidence 345788899999999999874
No 166
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=56.62 E-value=39 Score=22.10 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
.+.+...+..|+.+...++..+....+.|..|..=.-.|-.+++..+.-|.
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666666666666666677777666677777766665444
No 167
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.47 E-value=51 Score=23.16 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRY 75 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~ 75 (145)
+..|+.++..|+..+..|...+..+..+|
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45555556666666666655555555443
No 168
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=55.45 E-value=75 Score=26.76 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDS-SVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~-l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
.++..|+.+...+..++.. -.+....+..+=..|+.++.+|...+..+.+-+..
T Consensus 42 ~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 42 KRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444432 11334566677777888888888888777665544
No 169
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=55.04 E-value=48 Score=27.42 Aligned_cols=9 Identities=22% Similarity=0.634 Sum_probs=4.6
Q ss_pred Ccccccccc
Q 032187 134 QPLVASADM 142 (145)
Q Consensus 134 qpi~asadm 142 (145)
.|+.+..||
T Consensus 99 ~pf~V~CDm 107 (323)
T 1lwu_C 99 QPFLVFCEI 107 (323)
T ss_dssp SCEEEEEEE
T ss_pred CcEEEEEec
Confidence 455555554
No 170
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=54.54 E-value=35 Score=20.99 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
.++.+|..+.+.|..++..|......+..+-..-+.+...-..||
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355556666666665555555544444444443344443333333
No 171
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=54.44 E-value=9.5 Score=30.34 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=17.2
Q ss_pred ChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 032187 20 NVDERKRKRMISNRESARRSRMKKQKQMEDLVN 52 (145)
Q Consensus 20 ~~deRr~rR~~sNReSArrSR~RKq~~l~eLe~ 52 (145)
.++.+|-+|.+|-=.==-+.|.-+..-++++-.
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~ 148 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYMEFLW 148 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888766533333444444443333333
No 172
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=54.01 E-value=33 Score=20.47 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 032187 75 YVEMESANNILRVQ 88 (145)
Q Consensus 75 ~~~l~~EN~~Lra~ 88 (145)
...++.||.-|+..
T Consensus 12 vaslenenetlkkk 25 (49)
T 3he5_A 12 VASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHh
Confidence 33455555555444
No 173
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=53.58 E-value=44 Score=21.82 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDS 70 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~ 70 (145)
-.|+..|+.++..|+.++..|...+..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367777777777777777777665553
No 174
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=52.79 E-value=27 Score=19.24 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032187 73 QRYVEMESANNILRVQAMEL 92 (145)
Q Consensus 73 ~~~~~l~~EN~~Lra~~~~L 92 (145)
+.+..+..|-..|+.+++.|
T Consensus 9 qeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 9 QEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444
No 175
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=52.48 E-value=50 Score=22.20 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 62 AMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 62 ~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
...+..+..+..++...+..|..|..++..|..++..|
T Consensus 34 s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 34 EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455566777777777777777777664
No 176
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=51.78 E-value=1e+02 Score=25.47 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 032187 88 QAMELTDRLRSLNSVL 103 (145)
Q Consensus 88 ~~~~L~~rl~~l~~i~ 103 (145)
.+.||...+..||.-|
T Consensus 444 ~~~~~~~~~~~~~~~~ 459 (471)
T 3mq9_A 444 KVEELEGEITTLNHKL 459 (471)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555444444333
No 177
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=51.68 E-value=8.9 Score=23.86 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAML 64 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L 64 (145)
+..++++||.+|..|+.....|
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4478888999888888766554
No 178
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=51.03 E-value=65 Score=28.38 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEM-ESANNIL---RVQAMELTDRLRSLN 100 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l-~~EN~~L---ra~~~~L~~rl~~l~ 100 (145)
+.+..++-+.++.||..++.++......|.+- ..-|..| .+++++....|..-.
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe 93 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYE 93 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555556666666666555554432 2223333 444555555555443
No 179
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=50.92 E-value=21 Score=28.25 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 64 LKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 64 L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
+..+...+..++..+..||..+.+++..|++++.
T Consensus 146 ~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 146 FLWQYKSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555566666666666666665554
No 180
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=50.66 E-value=42 Score=20.77 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 70 SSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 70 ~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
.|-++...+..||.-||.++..-..+|..|.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE 37 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLE 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 3445566777899999999887777776554
No 181
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=50.62 E-value=52 Score=21.77 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
...++++...+..|+.+...++..+....+.|..|..=--.|-.+++..+.-|.
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 445666777777777777777777777777777777777777777777665544
No 182
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=50.29 E-value=71 Score=24.45 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 66 QNIDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
..+..|..+...+..||..|+.+.....+++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444444444444444433
No 183
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=50.10 E-value=33 Score=19.35 Aligned_cols=24 Identities=13% Similarity=-0.151 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 71 SVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 71 l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
|..+...+..+|..|..++..|+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444555566666666666665554
No 184
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=49.52 E-value=36 Score=20.79 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVE 77 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~ 77 (145)
.||.-|+.|+..|..|...+..+...+..
T Consensus 21 klenivarlendnanlekdianlekdian 49 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEKDIAN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 34455555555555555555444443333
No 185
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=48.60 E-value=50 Score=21.05 Aligned_cols=16 Identities=19% Similarity=0.327 Sum_probs=7.6
Q ss_pred CCCCCCCCCChHHHHH
Q 032187 11 GSDSDPRYANVDERKR 26 (145)
Q Consensus 11 gs~~~~~~~~~deRr~ 26 (145)
||+++.+....||+++
T Consensus 1 ~~~~~~~~~~~ee~r~ 16 (61)
T 2e62_A 1 GSSGSSGNGMDEEQRQ 16 (61)
T ss_dssp CCCSCCCSSTHHHHHH
T ss_pred CCCCccccccCHHHHH
Confidence 4555554344455443
No 186
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=48.27 E-value=49 Score=20.80 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
|.+-+.+|+.++..++.-...+..++..+.-....+..++..=+..+..|..++..+
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l 60 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVEL 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 445677788888777776665555555544444444344333344455555554444
No 187
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=48.04 E-value=1.4e+02 Score=25.96 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSV-----------QRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~-----------~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
+..++..|+.+...+..+|..+. +....+..+=..|+.++.+|...+..+.+-+..
T Consensus 82 ~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 82 LREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433 234577788888999999888888887766644
No 188
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=46.72 E-value=64 Score=21.75 Aligned_cols=11 Identities=18% Similarity=0.377 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 032187 88 QAMELTDRLRS 98 (145)
Q Consensus 88 ~~~~L~~rl~~ 98 (145)
++..|..|++-
T Consensus 87 evasLnRriql 97 (101)
T 3u59_A 87 EVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 189
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=46.61 E-value=66 Score=21.88 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 37 RRSRMKKQKQMEDLV----NEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 37 rrSR~RKq~~l~eLe----~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
+|-+.|-..|...=- .+...|+.++..|..++. .+..||..+..++..+..++..|
T Consensus 29 ~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~-------~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVE-------QLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555544332 234455555555544444 44456666666665655555543
No 190
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=46.40 E-value=73 Score=22.33 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNIL 85 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 85 (145)
..-..|.++..|+.++.+|+..+.........+..+|..|
T Consensus 12 ~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~l 51 (125)
T 1joc_A 12 RCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSL 51 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3444455666666666666666665544444444444443
No 191
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=45.87 E-value=95 Score=23.46 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA 89 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~ 89 (145)
.++...++.++..+..|...+..+...-..|+.|...|.+++
T Consensus 37 tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 37 TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555544444
No 192
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.73 E-value=85 Score=28.03 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 63 MLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 63 ~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
+|+.++..|+..+.....-=++|+.-+.+++.+++.|..-|.+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666655566677777777777777777765555
No 193
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=45.60 E-value=1.4e+02 Score=25.42 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 63 MLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 63 ~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
.|+.++..|+..+..-...=.+|+.-+..++.+++.|..-|++
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444444455666666666666655554443
No 194
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=44.59 E-value=83 Score=24.98 Aligned_cols=62 Identities=24% Similarity=0.307 Sum_probs=41.0
Q ss_pred HHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 28 RMISNRESA-RRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 28 R~~sNReSA-rrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
.-+.|||.. +.+|.+|+.-.+++. .|+... .-..++..|++.+...++||.+-.+++..++.
T Consensus 97 K~IR~~E~svqp~R~~R~~l~~~I~----kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 97 KSIRNIEASVQPSRDRKEKITDEIA----HLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH----HHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 456788765 667777766555553 233221 12356778888888899999888888876554
No 195
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=44.49 E-value=50 Score=19.84 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
++|.+|..|+.-...|..++..+-.. ..+-...|+..+..|.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae---~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAE---YNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 56667776666666666555543322 2233445555555443
No 196
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=42.74 E-value=62 Score=22.97 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQ 66 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~ 66 (145)
.+.+|+.+|..++..|.+|++
T Consensus 5 e~~~l~~qi~~~ekr~~RLKe 25 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKE 25 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544
No 197
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=42.63 E-value=1.2e+02 Score=23.68 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 55 NHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 55 ~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
.+|+.+.-....+.+.|+..+..+.+||..|+..+..|.
T Consensus 33 ~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 33 QQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 344444444555555555555566666666665555544
No 198
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=42.44 E-value=13 Score=22.84 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 75 YVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 75 ~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
...++.+|+-|...++.|..-+..|.
T Consensus 26 varlendnanlekdianlekdianle 51 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHH
Confidence 44677888888888888877766654
No 199
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=42.13 E-value=87 Score=21.98 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 77 EMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 77 ~l~~EN~~Lra~~~~L~~rl~ 97 (145)
.+......|-..+.++..++.
T Consensus 73 ~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 73 QLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444433
No 200
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=42.08 E-value=87 Score=21.94 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032187 80 SANNILRVQAMELTDRL 96 (145)
Q Consensus 80 ~EN~~Lra~~~~L~~rl 96 (145)
.|...|+.++.+|..+|
T Consensus 18 ~e~~~l~~~~~el~~~l 34 (125)
T 1joc_A 18 GEIEKLQTKVLELQRKL 34 (125)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 201
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=42.04 E-value=64 Score=20.39 Aligned_cols=6 Identities=33% Similarity=0.335 Sum_probs=2.5
Q ss_pred HhHHHH
Q 032187 31 SNRESA 36 (145)
Q Consensus 31 sNReSA 36 (145)
+||+-|
T Consensus 24 knr~Ea 29 (77)
T 3trt_A 24 KNLQEA 29 (77)
T ss_dssp HHHHHH
T ss_pred HhHHHH
Confidence 444433
No 202
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=41.94 E-value=90 Score=22.08 Aligned_cols=45 Identities=11% Similarity=0.191 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
.|..|+.+..-...-+..=+..-..+..|...|..++..|..++.
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333444445555555555555554443
No 203
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=41.67 E-value=1.6e+02 Score=24.77 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYV----------EMESANNILRVQAMELTDRLRSLNSVLQI 105 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~----------~l~~EN~~Lra~~~~L~~rl~~l~~i~~~ 105 (145)
-+|..+...+..+...|+.+.+.+...+. .+..+=..|+.++.+|...+..+..-+..
T Consensus 33 ~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 33 LELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555554433 23345555666666666666655544433
No 204
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=41.39 E-value=80 Score=21.33 Aligned_cols=22 Identities=23% Similarity=0.364 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDS 70 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~ 70 (145)
.|+.++..|..+-..|..++..
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~ 29 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELED 29 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 205
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=39.94 E-value=81 Score=20.96 Aligned_cols=51 Identities=20% Similarity=0.170 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
++.+|..|+.........+..+..++..+..|...||-+++++...+..+.
T Consensus 4 ~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 4 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555555433333333444555566666666666666666666665543
No 206
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.85 E-value=91 Score=21.53 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032187 53 EINHLESANAMLKQNIDSSV 72 (145)
Q Consensus 53 ~v~~L~~eN~~L~~~~~~l~ 72 (145)
.-...+.+...+..++..|+
T Consensus 41 ~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 41 LRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554
No 207
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=39.17 E-value=20 Score=25.88 Aligned_cols=25 Identities=8% Similarity=-0.057 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 73 QRYVEMESANNILRVQAMELTDRLR 97 (145)
Q Consensus 73 ~~~~~l~~EN~~Lra~~~~L~~rl~ 97 (145)
..+..+..|+..|+.++..|..++.
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554443
No 208
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=39.09 E-value=44 Score=27.16 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032187 74 RYVEMESANNILRVQAMELT 93 (145)
Q Consensus 74 ~~~~l~~EN~~Lra~~~~L~ 93 (145)
....+..+|..|.+++.+|.
T Consensus 186 eie~L~~~~~~L~eEi~~Le 205 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLE 205 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 209
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=39.03 E-value=1.3e+02 Score=22.93 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNID 69 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~ 69 (145)
.-+..|+.|+.+|..|..++.
T Consensus 132 ~AertV~kLqkeiD~LEDeL~ 152 (175)
T 3mud_A 132 YCLDTTAKNEKSIDDLEEKVA 152 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 210
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=39.02 E-value=1.2e+02 Score=22.53 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=38.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 29 MISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAME 91 (145)
Q Consensus 29 ~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~ 91 (145)
+-.|..|--.|=.+=-+..+.++.++..|.......-.+.......+..|+.+...|-..+..
T Consensus 54 v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 54 VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555566666777777776666666666666666666666666666555543
No 211
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.69 E-value=62 Score=27.44 Aligned_cols=24 Identities=8% Similarity=0.182 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 77 EMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 77 ~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
.+..|+..|+.+...+...+..+.
T Consensus 60 ~L~~e~e~l~~~~~~~~~e~~~~~ 83 (428)
T 4b4t_K 60 LLTLQEDYIKDEQRHLKRELKRAQ 83 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444333333
No 212
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=38.60 E-value=88 Score=20.99 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 32 NRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 32 NReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
|=.||=.+=.+-|+- +..++...+..|..+..++.....+...|..|=..|+.++.+|+
T Consensus 14 eLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 14 ELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433 33455666677777777777777777777777777777777754
No 213
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=38.40 E-value=17 Score=28.69 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 032187 52 NEINHLESANAMLKQN 67 (145)
Q Consensus 52 ~~v~~L~~eN~~L~~~ 67 (145)
.+...|+.||..|..+
T Consensus 26 ~eN~~Lk~e~~~l~~~ 41 (255)
T 2j5u_A 26 TENQHLKERLEELAQL 41 (255)
T ss_dssp CTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 214
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=38.26 E-value=89 Score=20.96 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032187 77 EMESANNILRVQAMELT 93 (145)
Q Consensus 77 ~l~~EN~~Lra~~~~L~ 93 (145)
.++..|..|-..+.||.
T Consensus 60 ~le~~n~~l~~riqELE 76 (83)
T 4ath_A 60 KLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHH
Confidence 45555665555554443
No 215
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=38.13 E-value=1.1e+02 Score=22.88 Aligned_cols=21 Identities=10% Similarity=-0.016 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 73 QRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 73 ~~~~~l~~EN~~Lra~~~~L~ 93 (145)
..+.++..|-..|+.++...+
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666655533
No 216
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=37.23 E-value=1.9e+02 Score=24.54 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYV----------EMESANNILRVQAMELTDRLRSLNSVL 103 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~----------~l~~EN~~Lra~~~~L~~rl~~l~~i~ 103 (145)
|..+-..+..+...|+.+.+.+...+. .+..+=..|+.++.+|...+..+..-+
T Consensus 36 l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433 333444444444545554444444333
No 217
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=37.18 E-value=1.6e+02 Score=25.08 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 032187 31 SNRESARRSRMKKQK-QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANN----------ILRVQAMELTDRLRSL 99 (145)
Q Consensus 31 sNReSArrSR~RKq~-~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~----------~Lra~~~~L~~rl~~l 99 (145)
.|-+.-+.+-.++.. ..-++-.++-.|-.+-..+..++..++.....+..+=. .|++++.+|.+++..|
T Consensus 9 ~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 88 (455)
T 2dq0_A 9 ENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGEL 88 (455)
T ss_dssp HCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence 355555554444432 10123355666666666666666666666555544322 4455555666666655
Q ss_pred HHHHHHH
Q 032187 100 NSVLQIW 106 (145)
Q Consensus 100 ~~i~~~~ 106 (145)
..-+..+
T Consensus 89 ~~~~~~~ 95 (455)
T 2dq0_A 89 ENEVEEL 95 (455)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 218
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=36.90 E-value=1.7e+02 Score=26.04 Aligned_cols=51 Identities=18% Similarity=0.029 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 40 RMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 40 R~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
...+.++-++|+.++..|+.+...-...|..|+.-+..+..+=..|...+.
T Consensus 105 dNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 105 DNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777766667777777666666666666665554
No 219
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=36.56 E-value=37 Score=26.20 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQ 66 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~ 66 (145)
.+.+|+++..+|+.||+.|..
T Consensus 162 ~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555444443
No 220
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=35.71 E-value=69 Score=18.95 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 74 RYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 74 ~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
.+..+++|=..|...++.|..+|+.|
T Consensus 21 elaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555543
No 221
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.62 E-value=1.1e+02 Score=21.32 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 032187 81 ANNILRVQ 88 (145)
Q Consensus 81 EN~~Lra~ 88 (145)
+=..+|++
T Consensus 90 eL~~~r~e 97 (129)
T 3tnu_B 90 ALQKAKQD 97 (129)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 33333333
No 222
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.95 E-value=89 Score=20.00 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 37 RRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 37 rrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
|+-|..=...+++|..-|-.+...-..=..-+......+..|..++..|..++..|..
T Consensus 21 r~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 21 RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333456666666555442100001111222334455667777777777766654
No 223
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=34.72 E-value=1.1e+02 Score=24.24 Aligned_cols=42 Identities=14% Similarity=0.019 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
++++|.+++.|+....++.+ .....+..-..+...+.+|.++
T Consensus 8 vd~~EErIs~le~rleei~q-------~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKR-------EGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555554444433 3333333333444445555544
No 224
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=34.38 E-value=1e+02 Score=20.40 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM 90 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~ 90 (145)
.+..++.++..|+............+...+..+..|-..|-.++.
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~ 59 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMK 59 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444433
No 225
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=34.33 E-value=1.1e+02 Score=20.67 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAML 64 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L 64 (145)
++.+..++..|+.+|..|
T Consensus 47 ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 47 IEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444433
No 226
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=34.30 E-value=1e+02 Score=20.61 Aligned_cols=30 Identities=30% Similarity=0.315 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLKQNIDSSVQ 73 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~ 73 (145)
.+++.+.+.+...|+..|..|..++..|.-
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 355666677777777788887777766543
No 227
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.17 E-value=74 Score=18.82 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 72 VQRYVEMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 72 ~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
-+++..+..|=..-+.++.+|..++..|..
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666677777776654
No 228
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.74 E-value=1.2e+02 Score=21.26 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 51 VNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 51 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
-..+..|+.+...|+.....+...+..++..|.-|--.
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 34556666666666666666666666666666665433
No 229
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=33.00 E-value=1e+02 Score=20.09 Aligned_cols=52 Identities=12% Similarity=0.252 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl 96 (145)
..+.++...+..|+.+...++..+....+.|..|..=--.|-.+++..+.-|
T Consensus 26 ~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 26 VEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455555566666666666666666555566666655555555555554433
No 230
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=32.69 E-value=1.8e+02 Score=22.83 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=22.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 25 KRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSS 71 (145)
Q Consensus 25 r~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l 71 (145)
..|+-+..|-.+=+ +.+..|+.++.+.+.|+..+..++...
T Consensus 164 ~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~ 204 (228)
T 3q0x_A 164 VVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQC 204 (228)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444322 255666666666666666666555543
No 231
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=32.51 E-value=79 Score=22.56 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQR 74 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~ 74 (145)
++..+|..|..++..+..++..+..+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555444444433
No 232
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=32.50 E-value=54 Score=21.51 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 66 QNIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
.++.-+..-+..-++-|+.|-.++.-|.+.++.+
T Consensus 29 k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 29 KSADHLNGLLRETEATNAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555666655555555555544
No 233
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.23 E-value=1.1e+02 Score=25.85 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
.+|..++..|+.+...|..+... +..|...|+.++..+++.+..+.
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~-------l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDY-------IKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555555566555555544443 33444555555656666665543
No 234
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=32.18 E-value=24 Score=24.55 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032187 42 KKQKQMEDLVNEINHLE 58 (145)
Q Consensus 42 RKq~~l~eLe~~v~~L~ 58 (145)
.|+..+++|..++..++
T Consensus 35 ~KQ~~ideLKe~i~q~~ 51 (96)
T 3fx0_A 35 AKQEVIDKLKEEAEQHK 51 (96)
T ss_dssp TTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36666666666666555
No 235
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=31.86 E-value=1.2e+02 Score=20.44 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 032187 81 ANNILRVQA 89 (145)
Q Consensus 81 EN~~Lra~~ 89 (145)
||..|..++
T Consensus 47 EN~~Lh~~i 55 (83)
T 1uii_A 47 ENEKLHKEI 55 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 236
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=31.62 E-value=1.4e+02 Score=21.35 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032187 71 SVQRYVEMESANNILRVQAMELT 93 (145)
Q Consensus 71 l~~~~~~l~~EN~~Lra~~~~L~ 93 (145)
+...+..|...|..|...+.++.
T Consensus 55 L~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 55 LEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333
No 237
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=31.28 E-value=52 Score=21.58 Aligned_cols=13 Identities=8% Similarity=0.169 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 032187 78 MESANNILRVQAM 90 (145)
Q Consensus 78 l~~EN~~Lra~~~ 90 (145)
|..+|..|+.++-
T Consensus 48 L~eq~~lLK~EIR 60 (71)
T 3bbp_D 48 LMEQIKLLKSEIR 60 (71)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 238
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.20 E-value=1.6e+02 Score=21.81 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 80 SANNILRVQAMELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 80 ~EN~~Lra~~~~L~~rl~~l~~i~~~~~ 107 (145)
.+-..+......|..++..-..+|..++
T Consensus 108 ~~~~~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 108 KEKYAIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666677777777666666653
No 239
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=31.08 E-value=1.1e+02 Score=19.93 Aligned_cols=30 Identities=7% Similarity=0.282 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQRYVEME 79 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~ 79 (145)
|...|..|..|+..|..++....+.+..+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776666554
No 240
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.05 E-value=88 Score=18.76 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 032187 85 LRVQAMELTDRLR 97 (145)
Q Consensus 85 Lra~~~~L~~rl~ 97 (145)
|..-++.|++.+.
T Consensus 29 lekiianlrdeia 41 (52)
T 3he5_B 29 LEKIIANLRDEIA 41 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444333
No 241
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.49 E-value=1.9e+02 Score=22.32 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR 95 (145)
Q Consensus 45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r 95 (145)
+.++.|..++..+..++..+..++..+......+..+=..+.+.+.++...
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~ 140 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL 140 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555444444444443333334444333333
No 242
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=30.35 E-value=1.5e+02 Score=23.16 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 61 NAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 61 N~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
.++|+.........|..+..--+.|++++..|+.+|+.|.
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 4556666666666777777766667777777777776653
No 243
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.32 E-value=74 Score=18.39 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAM 63 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~ 63 (145)
.+..|+.++..|+.|-.+
T Consensus 16 Qi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 16 QILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 244
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=29.97 E-value=95 Score=18.77 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 34 ESARRSRMKKQKQMEDLVNEINHLESANAMLKQN 67 (145)
Q Consensus 34 eSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~ 67 (145)
|-|-||=.|-++.+++||.++..-+..+..+...
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~e 41 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEE 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455555555555555555555444444444433
No 245
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=28.62 E-value=1.2e+02 Score=19.69 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 49 DLVNEINHLESANAMLKQNIDSSVQRYVEME 79 (145)
Q Consensus 49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~ 79 (145)
+|...|..|..|+..|..++....+.+..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888887777766554
No 246
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=28.50 E-value=1.5e+02 Score=20.67 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQ 104 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~ 104 (145)
+.+.+..+..|......|...+..+..++...+..|..|-+....|...+..|..=|.
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666666666666666666666666666665555554443
No 247
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=27.62 E-value=1e+02 Score=21.49 Aligned_cols=66 Identities=26% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 23 ERKRKRMISNRESARRSRMK----------KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMEL 92 (145)
Q Consensus 23 eRr~rR~~sNReSArrSR~R----------Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L 92 (145)
||++|-.+..+-.+=++=.= |-.-|+.--.=|..|+.+++.|..... ....++.+|..|...+.+|
T Consensus 35 ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~----~~~~l~~~n~~L~~riqeL 110 (118)
T 4ati_A 35 ERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN----RQKKLEHANRHLLLRVQEL 110 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
No 248
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=27.37 E-value=1.5e+02 Score=20.32 Aligned_cols=19 Identities=0% Similarity=0.022 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032187 51 VNEINHLESANAMLKQNID 69 (145)
Q Consensus 51 e~~v~~L~~eN~~L~~~~~ 69 (145)
+..+..|+.....++.++.
T Consensus 101 ~~~~~~l~~~l~~l~~~i~ 119 (133)
T 1fxk_C 101 ESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 249
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=27.37 E-value=1.7e+02 Score=22.11 Aligned_cols=26 Identities=12% Similarity=0.000 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032187 83 NILRVQAMELTDRLRSLNSVLQIWAE 108 (145)
Q Consensus 83 ~~Lra~~~~L~~rl~~l~~i~~~~~~ 108 (145)
..|-.|+.++.+.-.++.+.|-++..
T Consensus 111 ~~l~~Qll~l~Aed~AieDaIy~L~~ 136 (174)
T 2p22_A 111 TDGLNQLYNLVAQDYALTDTIECLSR 136 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557777777777777777777643
No 250
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.27 E-value=1.1e+02 Score=19.61 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 74 RYVEMESANNILRVQAMELTDRLRSLNSVLQ 104 (145)
Q Consensus 74 ~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~ 104 (145)
.+..|+.++..=.+++.+|+..|..+.+|+.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455555555555566666666666654
No 251
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.10 E-value=3.1e+02 Score=23.74 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 83 NILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 83 ~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
..|+..+..|+.+|+.|...+...
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777666543
No 252
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=26.72 E-value=1.2e+02 Score=19.05 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM--ELTDRLRSLNSVLQIWA 107 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~--~L~~rl~~l~~i~~~~~ 107 (145)
.+.+++.++.++...-..+..++............ ..+.+++. +...+..++++++..+.
T Consensus 5 ki~~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~--el~~~~i~~lE~~N~~~s~~~li~~~~ 66 (73)
T 3htk_B 5 KIKDIDDQIQQLLLKQRHLLSKMASSMKSLKNCQK--ELISTQILQFEAQNMDVSMNDVIGFFN 66 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHhhHHhHHHHHHHHHH
Confidence 34566667666666666655555554444444443 44444444 44455667777777654
No 253
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=26.62 E-value=55 Score=22.53 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 77 EMESANNILRVQAMELTDRLRSLNS 101 (145)
Q Consensus 77 ~l~~EN~~Lra~~~~L~~rl~~l~~ 101 (145)
.+..+...|+.++..+++.+..|.+
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555666666666667777666654
No 254
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=26.42 E-value=2e+02 Score=21.38 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032187 41 MKKQKQMEDLVNEINHLE 58 (145)
Q Consensus 41 ~RKq~~l~eLe~~v~~L~ 58 (145)
.+|+++|.+|..+...++
T Consensus 22 ~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 22 KQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677777766555443
No 255
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=25.30 E-value=63 Score=28.40 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ 88 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~ 88 (145)
..+|+.++.+++.+.......+....+....|+.+-.+...+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e 378 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAA 378 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 567777777777777776666655544444444333333333
No 256
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.32 E-value=1.8e+02 Score=20.24 Aligned_cols=15 Identities=20% Similarity=0.105 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 032187 76 VEMESANNILRVQAM 90 (145)
Q Consensus 76 ~~l~~EN~~Lra~~~ 90 (145)
..++.+=..+|+++.
T Consensus 87 ~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 87 GSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 257
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=24.02 E-value=1.8e+02 Score=20.00 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 67 NIDSSVQRYVEMESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 67 ~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l 99 (145)
++..+...+..+..+|..|...+.+|......|
T Consensus 69 el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 69 ELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555566666666666666665555444
No 258
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.81 E-value=1.7e+02 Score=21.44 Aligned_cols=9 Identities=11% Similarity=0.364 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 032187 50 LVNEINHLE 58 (145)
Q Consensus 50 Le~~v~~L~ 58 (145)
||.++..++
T Consensus 5 l~~~~~~~~ 13 (192)
T 2gkw_A 5 LESQLSRHD 13 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344443333
No 259
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=23.57 E-value=1.6e+02 Score=19.24 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
.+|..++..-+.|...|.-=++.++.++-....=|..|..+..-++.
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~ 52 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQI 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555555555555555554444445544444433333
No 260
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=23.40 E-value=50 Score=20.59 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 43 KQKQMEDLVNEINHLESANAML 64 (145)
Q Consensus 43 Kq~~l~eLe~~v~~L~~eN~~L 64 (145)
+..+++.|+.+|..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888888887765544
No 261
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=23.02 E-value=2.3e+02 Score=21.47 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 36 ARRSRMKKQKQMEDLVNEINHLESANAMLKQNID 69 (145)
Q Consensus 36 ArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~ 69 (145)
|=++-.+-++.++.||.++.....++..+...+.
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555554443
No 262
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=22.65 E-value=1.8e+02 Score=22.29 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 46 QMEDLVNEINHLESANAMLKQNIDSSVQ 73 (145)
Q Consensus 46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~ 73 (145)
.+.-.-.+++.|+.+|..|..+++.|.+
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677777777776666655543
No 263
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=22.17 E-value=1.7e+02 Score=19.10 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 63 MLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN 100 (145)
Q Consensus 63 ~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~ 100 (145)
.|...-..+-.++..++.+-..|.-.+..+.+||..+.
T Consensus 32 nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 32 NLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33333334445566677777777777777777766553
No 264
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.74 E-value=1.2e+02 Score=25.52 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032187 79 ESANNILRVQAMELTDRLRSL 99 (145)
Q Consensus 79 ~~EN~~Lra~~~~L~~rl~~l 99 (145)
+.+...|..++..+.+.+..|
T Consensus 45 ~~~~~~l~~~~~~~~~e~~~l 65 (405)
T 4b4t_J 45 EAQRNALNDKVRFIKDELRLL 65 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555443
No 265
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=21.73 E-value=2.6e+02 Score=20.94 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 65 KQNIDSSVQRYVEMESANNILRVQAMELTD 94 (145)
Q Consensus 65 ~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~ 94 (145)
..++...++.|..+ |..|+.++..|.+
T Consensus 185 e~el~~ak~~ye~l---n~~L~~eLp~l~~ 211 (251)
T 2fic_A 185 EEELIKAQKVFEEM---NVDLQEELPSLWN 211 (251)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 33444444444433 7777777776543
No 266
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.54 E-value=2.2e+02 Score=20.07 Aligned_cols=26 Identities=4% Similarity=0.102 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 81 ANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 81 EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
.-..|.+++.+|...+..|...+...
T Consensus 103 ~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 103 QEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555544443
No 267
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=21.18 E-value=2.1e+02 Score=20.19 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 50 LVNEINHLESANAMLKQNIDSSVQR 74 (145)
Q Consensus 50 Le~~v~~L~~eN~~L~~~~~~l~~~ 74 (145)
|-.+-..|+.+...+..++..+++.
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa 29 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETA 29 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555433
No 268
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=21.03 E-value=1.1e+02 Score=19.24 Aligned_cols=22 Identities=9% Similarity=0.271 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 44 QKQMEDLVNEINHLESANAMLK 65 (145)
Q Consensus 44 q~~l~eLe~~v~~L~~eN~~L~ 65 (145)
..+++.|+.++..|+.....|.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3578888988888887666654
No 269
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=20.91 E-value=2e+02 Score=19.87 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032187 75 YVEMESANNILRVQAMELTDRL 96 (145)
Q Consensus 75 ~~~l~~EN~~Lra~~~~L~~rl 96 (145)
|.....++..|+..+..|...|
T Consensus 91 ~~~e~~~~~~L~~~i~~Le~el 112 (117)
T 3kin_B 91 YEKEKEKNKALKSVIQHLEVEL 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444554444444444
No 270
>3duz_A GP67, major envelope glycoprotein; fusion protein, coiled-coil, fusion peptide, trimer, viral, lipoprotein; 2.95A {Autographa californica nuclearpolyhedrosis virus}
Probab=20.70 E-value=2.5e+02 Score=24.43 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187 75 YVEMESANNILRVQAMELTDRLRSLNSVLQIW 106 (145)
Q Consensus 75 ~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~ 106 (145)
...+.-||..|+..++.|.+++..|+.++..+
T Consensus 286 ~~~lm~e~~~lr~Nl~~L~~~~n~l~~~l~~v 317 (487)
T 3duz_A 286 QEELMYENDLLKMNIELMHAHINKLNNMLHDL 317 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34456678888888888888888877777663
No 271
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=20.24 E-value=2.2e+02 Score=19.52 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 032187 47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEME---SANNILRVQAMELT 93 (145)
Q Consensus 47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~---~EN~~Lra~~~~L~ 93 (145)
+++|..++...+.-...-...|..+++...... ..+.+|++|+.-..
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~ 53 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYK 53 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544444444455544443333 56677777775433
Done!