Query 032189
Match_columns 145
No_of_seqs 103 out of 155
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 10:47:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3404 G10 protein/predicted 100.0 2E-92 4.3E-97 544.9 10.0 144 1-144 1-145 (145)
2 PF01125 G10: G10 protein; In 100.0 1.1E-90 2.3E-95 540.8 10.4 143 1-143 1-145 (145)
3 COG5132 BUD31 Cell cycle contr 100.0 3.8E-79 8.3E-84 470.0 7.4 144 1-145 1-146 (146)
4 PF14553 YqbF: YqbF, hypotheti 64.6 3.4 7.4E-05 26.8 0.9 18 67-84 18-35 (43)
5 PF04376 ATE_N: Arginine-tRNA- 60.2 7.2 0.00016 27.4 2.0 30 67-106 28-60 (80)
6 PRK12726 flagellar biosynthesi 60.1 18 0.00039 33.1 5.0 38 50-92 127-164 (407)
7 PF08513 LisH: LisH; InterPro 53.4 10 0.00022 21.6 1.6 18 70-87 3-20 (27)
8 PF06677 Auto_anti-p27: Sjogre 48.1 7.4 0.00016 24.7 0.4 23 114-137 17-41 (41)
9 smart00667 LisH Lissencephaly 47.0 15 0.00033 20.0 1.6 21 67-87 3-23 (34)
10 PF03604 DNA_RNApol_7kD: DNA d 41.8 12 0.00027 22.5 0.7 16 124-139 11-26 (32)
11 PRK00420 hypothetical protein; 40.8 12 0.00027 28.4 0.7 22 115-137 24-47 (112)
12 PF12368 DUF3650: Protein of u 40.2 13 0.00029 22.2 0.6 16 53-73 4-19 (28)
13 PF14077 WD40_alt: Alternative 39.3 17 0.00037 24.2 1.1 12 68-79 31-42 (48)
14 PRK11798 ClpXP protease specif 37.0 21 0.00046 28.3 1.5 15 70-84 11-25 (138)
15 COG0694 Thioredoxin-like prote 37.0 13 0.00029 27.4 0.3 10 136-145 51-60 (93)
16 PRK01305 arginyl-tRNA-protein 34.9 27 0.00058 29.5 1.9 26 67-101 35-63 (240)
17 PTZ00087 thrombosponding-relat 34.6 21 0.00045 31.8 1.2 19 59-77 314-332 (340)
18 PF08946 Osmo_CC: Osmosensory 32.6 47 0.001 22.0 2.3 21 13-33 12-32 (46)
19 PF11808 DUF3329: Domain of un 31.0 83 0.0018 22.3 3.7 24 9-32 61-87 (90)
20 COG2969 SspB Stringent starvat 30.9 29 0.00064 28.0 1.4 14 70-83 12-25 (155)
21 PF04210 MtrG: Tetrahydrometha 30.4 23 0.00049 25.3 0.7 27 9-35 8-34 (70)
22 cd07624 BAR_SNX7_30 The Bin/Am 29.2 53 0.0012 26.2 2.7 25 9-33 10-34 (200)
23 PRK06342 transcription elongat 28.7 31 0.00067 27.3 1.2 24 10-33 31-54 (160)
24 cd08796 Death_IRAK-M Death dom 28.6 19 0.00041 26.3 0.0 37 11-47 23-60 (89)
25 COG3433 Aryl carrier domain [S 27.7 25 0.00054 25.3 0.5 12 87-98 36-47 (74)
26 PF13719 zinc_ribbon_5: zinc-r 27.0 33 0.00071 20.7 0.9 19 120-138 13-33 (37)
27 PF08343 RNR_N: Ribonucleotide 26.7 60 0.0013 23.2 2.3 54 10-92 11-65 (82)
28 cd03571 ENTH_epsin ENTH domain 26.2 45 0.00097 25.3 1.7 51 24-82 1-70 (123)
29 PRK01026 tetrahydromethanopter 25.8 37 0.00079 24.6 1.1 27 9-35 11-37 (77)
30 KOG2752 Uncharacterized conser 24.5 52 0.0011 29.7 2.0 59 84-142 80-164 (345)
31 cd08793 Death_IRAK4 Death doma 23.7 21 0.00045 26.8 -0.6 37 10-46 19-62 (100)
32 PF14445 Prok-RING_2: Prokaryo 23.0 22 0.00048 24.3 -0.5 14 131-144 23-36 (57)
33 smart00659 RPOLCX RNA polymera 22.4 44 0.00096 21.2 0.8 13 127-139 16-28 (44)
34 PF13717 zinc_ribbon_4: zinc-r 22.1 45 0.00098 20.1 0.8 19 120-138 13-33 (36)
35 PRK11865 pyruvate ferredoxin o 21.9 65 0.0014 28.0 2.0 38 45-82 234-271 (299)
36 PF13824 zf-Mss51: Zinc-finger 21.8 40 0.00087 22.9 0.6 21 119-139 2-23 (55)
37 PF14394 DUF4423: Domain of un 21.5 64 0.0014 25.5 1.8 28 10-37 129-156 (171)
38 TIGR02098 MJ0042_CXXC MJ0042 f 20.8 50 0.0011 19.4 0.8 18 120-137 13-32 (38)
39 TIGR01149 mtrG N5-methyltetrah 20.7 47 0.001 23.7 0.7 26 9-34 8-33 (70)
No 1
>KOG3404 consensus G10 protein/predicted nuclear transcription regulator [Transcription]
Probab=100.00 E-value=2e-92 Score=544.89 Aligned_cols=144 Identities=69% Similarity=1.387 Sum_probs=143.0
Q ss_pred CCCCCCCCCCCCCChhchHHHHHHHHHHHHHhhCCCCCCCCCCccccceeeccccchhhhHhhhhhhhhhhHHHHHHHHh
Q 032189 1 MPKVKTNRVKIPEGWELIEPTLRELQAKMREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLD 80 (145)
Q Consensus 1 Mp~ir~~~k~pP~G~e~Ie~tL~e~~~kmrea~~e~~~~krk~e~lWpI~rI~hqrSRYIydlyYk~k~ISreLY~~~lk 80 (145)
||+|++++|+||+|||+|||||++|+++||+||+++|+|++++|+||||||||||||||||||||||++||+|||+||++
T Consensus 1 mpkv~~~rk~~Pdg~e~IeptL~e~e~kmReae~~~~~~~~~~E~lwpIfqlhHQrsRYiYdlyykR~~IS~eLY~~~l~ 80 (145)
T KOG3404|consen 1 MPKVKRSRKPPPDGWELIEPTLEEFEAKMREAETEPHEGKRKTESLWPIFQLHHQRSRYIYDLYYKRKAISRELYDYCLK 80 (145)
T ss_pred CCccCcCCCCCCcchhhhhhhHHHHHHHHHHhhcCcccCCCcchhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHhhccccccccccccccccCCCCCCcceEEeccc-cccccceeeccccccccccCC
Q 032189 81 QGYADRNLIAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPK-NLREEKVIECVHCGCRGCASG 144 (145)
Q Consensus 81 ~~yaD~~LIaKWkK~GYE~LCCl~CIq~~~~n~gttCICRVPk-~l~~~~~~~C~~CGC~GCaS~ 144 (145)
++|||++|||||||+|||+||||+||||.|+|||||||||||+ +|+++.+++||||||+||||+
T Consensus 81 ~~yaD~~LiakWkk~GYE~LCClRCIq~~dsn~Gt~CICRVPk~~ld~~~~~~C~hCGCrGCs~~ 145 (145)
T KOG3404|consen 81 EKYADKNLIAKWKKQGYENLCCLRCIQTRDSNFGTTCICRVPKSKLDVERIVECVHCGCRGCSGY 145 (145)
T ss_pred cccchHHHHHHHhhcCccceeeeeeccccccCCCceEEEeCChhhcChhheeeeeccCcCCCCCC
Confidence 9999999999999999999999999999999999999999999 999999999999999999985
No 2
>PF01125 G10: G10 protein; InterPro: IPR001748 A Xenopus protein known as G10 [] has been found to be highly conserved in a wide range of eukaryotic species. The function of G10 is still unknown. G10 is a protein of about 17 to 18 kDa (143 to 157 residues) which is hydrophilic and whose C-terminal half is rich in cysteines and could be involved in metal-binding.; GO: 0005634 nucleus
Probab=100.00 E-value=1.1e-90 Score=540.76 Aligned_cols=143 Identities=71% Similarity=1.367 Sum_probs=141.1
Q ss_pred CCCCCCCC-CCCCCChhchHHHHHHHHHHHHHhhCCCCCCCCCCccccceeeccccchhhhHhhhhhhhhhhHHHHHHHH
Q 032189 1 MPKVKTNR-VKIPEGWELIEPTLRELQAKMREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCL 79 (145)
Q Consensus 1 Mp~ir~~~-k~pP~G~e~Ie~tL~e~~~kmrea~~e~~~~krk~e~lWpI~rI~hqrSRYIydlyYk~k~ISreLY~~~l 79 (145)
||+||+++ ++||+|||+|||||+||++|||||+|++|+||+++|+||||||||||||||||||||++|+||||||||||
T Consensus 1 MPkir~~~~k~pP~G~~~Ie~tL~e~~~kmr~ae~~~~~~k~k~e~lWpI~rI~hqrSRYIydlyYk~k~ISkeLY~~ll 80 (145)
T PF01125_consen 1 MPKIRTSRKKPPPEGFEKIEPTLEEFEQKMREAENEPHEGKRKNESLWPIFRIHHQRSRYIYDLYYKRKAISKELYDWLL 80 (145)
T ss_pred CCCcccCCCCCCCCchHHHHHHHHHHHHHHHHHhhCCCcCCCCCccccceeeecchhhhHHHHHHHHhhhccHHHHHHHH
Confidence 99999764 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCHHHHHhhccccccccccccccccCCCCCCcceEEeccc-cccccceeeccccccccccC
Q 032189 80 DQGYADRNLIAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPK-NLREEKVIECVHCGCRGCAS 143 (145)
Q Consensus 80 k~~yaD~~LIaKWkK~GYE~LCCl~CIq~~~~n~gttCICRVPk-~l~~~~~~~C~~CGC~GCaS 143 (145)
+++|||++|||||||+|||+||||+|||++|+|||+|||||||+ +|+++.+++||||||+||||
T Consensus 81 ~~~yaD~~LIaKWKk~GYE~LCCl~Ciq~~~~n~g~tCICRVP~~~l~~~~~~~c~~CGC~GCaS 145 (145)
T PF01125_consen 81 KEKYADANLIAKWKKPGYEKLCCLRCIQTRDTNFGTTCICRVPKAKLEEKQFVECVHCGCRGCAS 145 (145)
T ss_pred HcCCcCHHHHHHhccccHHHHHHHHHhccccccCCCceEEeCcHHHhccCcccccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999 99999999999999999998
No 3
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning]
Probab=100.00 E-value=3.8e-79 Score=470.04 Aligned_cols=144 Identities=55% Similarity=1.110 Sum_probs=139.3
Q ss_pred CCCCCCCC-CCCCCChhchHHHHHHHHHHHHHhhCCCCCCCCCCccccceeeccccchhhhHhhhhhhhhhhHHHHHHHH
Q 032189 1 MPKVKTNR-VKIPEGWELIEPTLRELQAKMREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCL 79 (145)
Q Consensus 1 Mp~ir~~~-k~pP~G~e~Ie~tL~e~~~kmrea~~e~~~~krk~e~lWpI~rI~hqrSRYIydlyYk~k~ISreLY~~~l 79 (145)
||+|+++| |+||+|||+|+|||++|+.+||+|||++..+ .+.|.||||||+|||||||||+|||||++||.+||+||+
T Consensus 1 MPRi~t~rskp~PdgFeki~ptL~~fe~~mRqaen~~~~~-sk~E~lwpIfQLHHQRSRYIY~LyyKR~aISt~LY~wL~ 79 (146)
T COG5132 1 MPRIPTNRSKPAPDGFEKIRPTLEKFEAEMRQAENAPLAP-SKPENLWPIFQLHHQRSRYIYNLYYKRGAISTKLYGWLS 79 (146)
T ss_pred CCcCccCCCCCCCcchhhhcchHHHHHHHHHHHhcCCCCC-CChHHhhHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999988 7779999999999999999999999999865 445999999999999999999999999999999999999
Q ss_pred hccccCHHHHHhhccccccccccccccccCCCCCCcceEEeccc-cccccceeeccccccccccCCC
Q 032189 80 DQGYADRNLIAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPK-NLREEKVIECVHCGCRGCASGD 145 (145)
Q Consensus 80 k~~yaD~~LIaKWkK~GYE~LCCl~CIq~~~~n~gttCICRVPk-~l~~~~~~~C~~CGC~GCaS~D 145 (145)
+++|||.+|||||+|.|||+||||+|||+.+++||+|||||||+ +|++.+.+.|+||||+||||.|
T Consensus 80 k~~yaD~~LiakW~k~GYEkLCCLRCIQ~~esk~GstCICRVP~~~ld~~qr~kC~hCGCrGCas~d 146 (146)
T COG5132 80 KNRYADHELIAKWDKVGYEKLCCLRCIQPIESKHGSTCICRVPQRNLDVSQRLKCDHCGCRGCASYD 146 (146)
T ss_pred HhcccchhHhhhhcccchhhhhhHhhcCcccccCCCEEEEeCchhhcCHHHhccccccCCCcccCCC
Confidence 99999999999999999999999999999999999999999999 9999999999999999999987
No 4
>PF14553 YqbF: YqbF, hypothetical protein domain; PDB: 2HJQ_A.
Probab=64.63 E-value=3.4 Score=26.85 Aligned_cols=18 Identities=22% Similarity=0.593 Sum_probs=14.4
Q ss_pred hhhhhHHHHHHHHhcccc
Q 032189 67 RKEISKELYEFCLDQGYA 84 (145)
Q Consensus 67 ~k~ISreLY~~~lk~~ya 84 (145)
.+.||+++|+||.++++-
T Consensus 18 ee~V~kk~y~YL~~ne~F 35 (43)
T PF14553_consen 18 EEKVSKKIYNYLNDNEFF 35 (43)
T ss_dssp EEEE-HHHHHHHHHSTTE
T ss_pred eeehhHHHHHHHhcCCcE
Confidence 467999999999998864
No 5
>PF04376 ATE_N: Arginine-tRNA-protein transferase, N terminus; InterPro: IPR007471 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the N-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=60.20 E-value=7.2 Score=27.37 Aligned_cols=30 Identities=33% Similarity=0.755 Sum_probs=25.2
Q ss_pred hhhhhHHHHHHHHhccccCHHHHHhhcccc---cccccccccc
Q 032189 67 RKEISKELYEFCLDQGYADRNLIAKWKKPG---YERLCCLRCM 106 (145)
Q Consensus 67 ~k~ISreLY~~~lk~~yaD~~LIaKWkK~G---YE~LCCl~CI 106 (145)
-..++.++|+-|++.| |++.| |..-| ..|-
T Consensus 28 ~~~~~~~~y~~Ll~~G---------~RRsG~~~YrP~c-~~C~ 60 (80)
T PF04376_consen 28 SESLSPEDYQQLLDRG---------FRRSGNYFYRPNC-QSCC 60 (80)
T ss_pred cccCCHHHHHHHHHhC---------CcccCCEEecCCC-CCCc
Confidence 3458999999999999 99999 88777 6665
No 6
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=60.06 E-value=18 Score=33.09 Aligned_cols=38 Identities=11% Similarity=0.307 Sum_probs=25.3
Q ss_pred eeccccchhhhHhhhhhhhhhhHHHHHHHHhccccCHHHHHhh
Q 032189 50 FKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADRNLIAKW 92 (145)
Q Consensus 50 ~rI~hqrSRYIydlyYk~k~ISreLY~~~lk~~yaD~~LIaKW 92 (145)
-.+|++-+ -+| +..|+=++|+|++|+++| +|..++..+
T Consensus 127 ~~~~~~~~---~~~-~~~~~~~~~~~~~L~~~g-V~~~~~~~l 164 (407)
T PRK12726 127 AALNRELA---VKM-REEREQNSDFVKFLKGRG-ISDTYVADF 164 (407)
T ss_pred HHHHHHHH---HHh-hhhhcccHHHHHHHHHcC-CCHHHHHHH
Confidence 33444444 455 556655669999999999 666666665
No 7
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=53.39 E-value=10 Score=21.59 Aligned_cols=18 Identities=17% Similarity=0.754 Sum_probs=13.7
Q ss_pred hhHHHHHHHHhccccCHH
Q 032189 70 ISKELYEFCLDQGYADRN 87 (145)
Q Consensus 70 ISreLY~~~lk~~yaD~~ 87 (145)
|..=+|+||+++||.+..
T Consensus 3 Ln~lI~~YL~~~Gy~~tA 20 (27)
T PF08513_consen 3 LNQLIYDYLVENGYKETA 20 (27)
T ss_dssp HHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHCCcHHHH
Confidence 556689999999998764
No 8
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=48.07 E-value=7.4 Score=24.69 Aligned_cols=23 Identities=35% Similarity=0.846 Sum_probs=16.3
Q ss_pred Ccce-EEeccc-cccccceeeccccc
Q 032189 114 QTTC-VCRVPK-NLREEKVIECVHCG 137 (145)
Q Consensus 114 gttC-ICRVPk-~l~~~~~~~C~~CG 137 (145)
+.+| .|-+|. +...+ .+-||.|+
T Consensus 17 ~~~Cp~C~~PL~~~k~g-~~~Cv~C~ 41 (41)
T PF06677_consen 17 DEHCPDCGTPLMRDKDG-KIYCVSCG 41 (41)
T ss_pred cCccCCCCCeeEEecCC-CEECCCCC
Confidence 3456 688999 75444 58899985
No 9
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=46.96 E-value=15 Score=19.99 Aligned_cols=21 Identities=29% Similarity=0.683 Sum_probs=17.1
Q ss_pred hhhhhHHHHHHHHhccccCHH
Q 032189 67 RKEISKELYEFCLDQGYADRN 87 (145)
Q Consensus 67 ~k~ISreLY~~~lk~~yaD~~ 87 (145)
+..+.+=+++||+++||.+..
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta 23 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETA 23 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHH
Confidence 455777899999999997765
No 10
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=41.82 E-value=12 Score=22.52 Aligned_cols=16 Identities=38% Similarity=0.854 Sum_probs=11.1
Q ss_pred cccccceeeccccccc
Q 032189 124 NLREEKVIECVHCGCR 139 (145)
Q Consensus 124 ~l~~~~~~~C~~CGC~ 139 (145)
.++....+.|.+||++
T Consensus 11 ~~~~~~~irC~~CG~R 26 (32)
T PF03604_consen 11 ELKPGDPIRCPECGHR 26 (32)
T ss_dssp -BSTSSTSSBSSSS-S
T ss_pred EcCCCCcEECCcCCCe
Confidence 3555667999999986
No 11
>PRK00420 hypothetical protein; Validated
Probab=40.82 E-value=12 Score=28.39 Aligned_cols=22 Identities=32% Similarity=0.818 Sum_probs=15.6
Q ss_pred cce-EEeccc-cccccceeeccccc
Q 032189 115 TTC-VCRVPK-NLREEKVIECVHCG 137 (145)
Q Consensus 115 ttC-ICRVPk-~l~~~~~~~C~~CG 137 (145)
.+| .|-.|. .+. +..+.|++||
T Consensus 24 ~~CP~Cg~pLf~lk-~g~~~Cp~Cg 47 (112)
T PRK00420 24 KHCPVCGLPLFELK-DGEVVCPVHG 47 (112)
T ss_pred CCCCCCCCcceecC-CCceECCCCC
Confidence 456 677888 664 4468899987
No 12
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=40.17 E-value=13 Score=22.20 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=11.2
Q ss_pred cccchhhhHhhhhhhhhhhHH
Q 032189 53 AHQKSRYIFDLYYRRKEISKE 73 (145)
Q Consensus 53 ~hqrSRYIydlyYk~k~ISre 73 (145)
-|.|+|||- +.-||.|
T Consensus 4 ~hprNrYV~-----eh~ls~e 19 (28)
T PF12368_consen 4 VHPRNRYVK-----EHGLSEE 19 (28)
T ss_pred cCcchhhHH-----hcCCCHH
Confidence 388999984 5556655
No 13
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=39.27 E-value=17 Score=24.20 Aligned_cols=12 Identities=25% Similarity=0.883 Sum_probs=9.6
Q ss_pred hhhhHHHHHHHH
Q 032189 68 KEISKELYEFCL 79 (145)
Q Consensus 68 k~ISreLY~~~l 79 (145)
+.|+|+||||.-
T Consensus 31 rKINrdLfdFSt 42 (48)
T PF14077_consen 31 RKINRDLFDFST 42 (48)
T ss_pred HHHhHHHHhhhh
Confidence 449999999863
No 14
>PRK11798 ClpXP protease specificity-enhancing factor; Provisional
Probab=37.02 E-value=21 Score=28.25 Aligned_cols=15 Identities=33% Similarity=0.793 Sum_probs=12.5
Q ss_pred hhHHHHHHHHhcccc
Q 032189 70 ISKELYEFCLDQGYA 84 (145)
Q Consensus 70 ISreLY~~~lk~~ya 84 (145)
+=|.|||||+++++-
T Consensus 11 LlRA~yeW~~Dn~~T 25 (138)
T PRK11798 11 LLRALYEWIVDNGLT 25 (138)
T ss_pred HHHHHHHHHhhCCCC
Confidence 557899999999963
No 15
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=36.99 E-value=13 Score=27.40 Aligned_cols=10 Identities=40% Similarity=1.026 Sum_probs=7.5
Q ss_pred cccccccCCC
Q 032189 136 CGCRGCASGD 145 (145)
Q Consensus 136 CGC~GCaS~D 145 (145)
=+|.||+|++
T Consensus 51 GaC~gC~sS~ 60 (93)
T COG0694 51 GACSGCPSST 60 (93)
T ss_pred CcCCCCcccH
Confidence 3679998874
No 16
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=34.88 E-value=27 Score=29.49 Aligned_cols=26 Identities=35% Similarity=0.788 Sum_probs=22.8
Q ss_pred hhhhhHHHHHHHHhccccCHHHHHhhcccc---ccccc
Q 032189 67 RKEISKELYEFCLDQGYADRNLIAKWKKPG---YERLC 101 (145)
Q Consensus 67 ~k~ISreLY~~~lk~~yaD~~LIaKWkK~G---YE~LC 101 (145)
...++.++|+.|+..| |++.| |+.-|
T Consensus 35 ~~~~~~~~y~~L~~~G---------fRRsG~~~YrP~C 63 (240)
T PRK01305 35 SHPIAAELYDELLQAG---------FRRSGNIAYRPHC 63 (240)
T ss_pred cccCCHHHHHHHHHcC---------cCcCCCeeecCCC
Confidence 4468999999999999 89999 88886
No 17
>PTZ00087 thrombosponding-related protein; Provisional
Probab=34.56 E-value=21 Score=31.85 Aligned_cols=19 Identities=37% Similarity=0.870 Sum_probs=17.0
Q ss_pred hhHhhhhhhhhhhHHHHHH
Q 032189 59 YIFDLYYRRKEISKELYEF 77 (145)
Q Consensus 59 YIydlyYk~k~ISreLY~~ 77 (145)
-+|.+||++|.-.+||||=
T Consensus 314 ily~ify~~k~~ekelyen 332 (340)
T PTZ00087 314 ILYHIFYKKKGAEKELYEN 332 (340)
T ss_pred HHHHHhhhccchHHHHHHh
Confidence 4699999999999999984
No 18
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=32.61 E-value=47 Score=21.99 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=16.9
Q ss_pred CChhchHHHHHHHHHHHHHhh
Q 032189 13 EGWELIEPTLRELQAKMREAE 33 (145)
Q Consensus 13 ~G~e~Ie~tL~e~~~kmrea~ 33 (145)
+-|+.||..++++++++.+++
T Consensus 12 e~~d~IEqkiedid~qIaeLe 32 (46)
T PF08946_consen 12 EHYDNIEQKIEDIDEQIAELE 32 (46)
T ss_dssp ---THHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhHHHHHHHHHHHH
Confidence 568999999999999999887
No 19
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=31.02 E-value=83 Score=22.29 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=15.3
Q ss_pred CCCCCC---hhchHHHHHHHHHHHHHh
Q 032189 9 VKIPEG---WELIEPTLRELQAKMREA 32 (145)
Q Consensus 9 k~pP~G---~e~Ie~tL~e~~~kmrea 32 (145)
..||+| |+.|-+.|-.++++.|..
T Consensus 61 ~~pP~~~G~W~~if~~Lyr~qrr~r~~ 87 (90)
T PF11808_consen 61 DEPPEGSGIWGEIFDRLYRLQRRNRKR 87 (90)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 458888 566666666666655553
No 20
>COG2969 SspB Stringent starvation protein B [General function prediction only]
Probab=30.87 E-value=29 Score=28.02 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=12.1
Q ss_pred hhHHHHHHHHhccc
Q 032189 70 ISKELYEFCLDQGY 83 (145)
Q Consensus 70 ISreLY~~~lk~~y 83 (145)
+=|.|||||+++++
T Consensus 12 LlRA~yeWl~DN~~ 25 (155)
T COG2969 12 LLRALYEWLLDNQL 25 (155)
T ss_pred HHHHHHHHHhcCCC
Confidence 55789999999985
No 21
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=30.36 E-value=23 Score=25.28 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=22.4
Q ss_pred CCCCCChhchHHHHHHHHHHHHHhhCC
Q 032189 9 VKIPEGWELIEPTLRELQAKMREAEND 35 (145)
Q Consensus 9 k~pP~G~e~Ie~tL~e~~~kmrea~~e 35 (145)
-.||+-|..|...|++.++|..-+..|
T Consensus 8 iv~~~~~~~i~~rLd~iEeKvEf~~~E 34 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEKVEFTNAE 34 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 357999999999999999998765433
No 22
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.19 E-value=53 Score=26.20 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=22.4
Q ss_pred CCCCCChhchHHHHHHHHHHHHHhh
Q 032189 9 VKIPEGWELIEPTLRELQAKMREAE 33 (145)
Q Consensus 9 k~pP~G~e~Ie~tL~e~~~kmrea~ 33 (145)
+.||+-|+.|..-+++|+++|..++
T Consensus 10 ~~~d~eF~e~~eyi~~L~~~l~~~~ 34 (200)
T cd07624 10 KNRSPEFDKMNEYLTLFGEKLGTIE 34 (200)
T ss_pred cCCCccHHHHHHHHHHHHHHhHHHH
Confidence 5677789999999999999999876
No 23
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=28.73 E-value=31 Score=27.29 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.6
Q ss_pred CCCCChhchHHHHHHHHHHHHHhh
Q 032189 10 KIPEGWELIEPTLRELQAKMREAE 33 (145)
Q Consensus 10 ~pP~G~e~Ie~tL~e~~~kmrea~ 33 (145)
-.|+||++++..|+.|..++++|-
T Consensus 31 lT~~G~~~L~~El~~L~~~i~~Ar 54 (160)
T PRK06342 31 VTEAGLKALEDQLAQARAAYEAAQ 54 (160)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999984
No 24
>cd08796 Death_IRAK-M Death domain of Interleukin 1 Receptor Associated Kinase-M. Death Domain (DD) of Interleukin-1 Receptor-Associated Kinase M (IRAK-M). IRAKs are essential components of innate immunity and inflammation in mammals and other vertebrates. They are involved in signal transduction pathways involving IL-1 and IL-18 receptors, Toll-like receptors(TLRs), nuclear factor-kappaB (NF-kB), and mitogen-activated protein kinases (MAPKs). IRAKs contain an N-terminal DD domain and a C-terminal kinase domain. IRAK-M, also called IRAK-3, is an inactive kinase present only in macrophages in an inducible manner. It is a negative regulator of TLR signaling and it contributes to the attenuation of NF-kB activation. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=28.61 E-value=19 Score=26.28 Aligned_cols=37 Identities=27% Similarity=0.410 Sum_probs=29.5
Q ss_pred CCCChhchHHHHHHHHHHHHHhhCCCCCCCCCC-cccc
Q 032189 11 IPEGWELIEPTLRELQAKMREAENDPHDGKRKC-ETLW 47 (145)
Q Consensus 11 pP~G~e~Ie~tL~e~~~kmrea~~e~~~~krk~-e~lW 47 (145)
+|.+|..+...+.-+..++|.+++....|+... |.||
T Consensus 23 ~~~~W~~lA~~i~~~~~~vr~ie~~~~~G~SPT~eLL~ 60 (89)
T cd08796 23 GGLGWRTLAERLSSSWLEVRHIEKYVVQGKSGTRELLW 60 (89)
T ss_pred ccccHHHHHHHHhccHHHHHHHHHHHHcCCCcHHHHHH
Confidence 567999999999988889999998777676554 4444
No 25
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.71 E-value=25 Score=25.33 Aligned_cols=12 Identities=33% Similarity=0.985 Sum_probs=10.1
Q ss_pred HHHHhhcccccc
Q 032189 87 NLIAKWKKPGYE 98 (145)
Q Consensus 87 ~LIaKWkK~GYE 98 (145)
.|.++|||.|++
T Consensus 36 ~L~~~wR~~G~~ 47 (74)
T COG3433 36 ALLERWRKRGAD 47 (74)
T ss_pred HHHHHHHHcCCc
Confidence 577999999975
No 26
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=26.96 E-value=33 Score=20.75 Aligned_cols=19 Identities=37% Similarity=0.892 Sum_probs=14.6
Q ss_pred eccc-cccc-cceeecccccc
Q 032189 120 RVPK-NLRE-EKVIECVHCGC 138 (145)
Q Consensus 120 RVPk-~l~~-~~~~~C~~CGC 138 (145)
+||. +|.+ +..+.|.+||-
T Consensus 13 ~v~~~~l~~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 13 RVPDDKLPAGGRKVRCPKCGH 33 (37)
T ss_pred EcCHHHcccCCcEEECCCCCc
Confidence 6888 7744 56799999984
No 27
>PF08343 RNR_N: Ribonucleotide reductase N-terminal; InterPro: IPR013554 This domain is found at the N terminus of bacterial ribonucleoside-diphosphate reductases (ribonucleotide reductases, RNRs) which catalyse the formation of deoxyribonucleotides []. It occurs together with the RNR all-alpha domain (IPR013509 from INTERPRO) and the RNR barrel domain (IPR000788 from INTERPRO). ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A.
Probab=26.74 E-value=60 Score=23.21 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=31.0
Q ss_pred CCCCChhchHHHHHHHHHHHHH-hhCCCCCCCCCCccccceeeccccchhhhHhhhhhhhhhhHHHHHHHHhccccCHHH
Q 032189 10 KIPEGWELIEPTLRELQAKMRE-AENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADRNL 88 (145)
Q Consensus 10 ~pP~G~e~Ie~tL~e~~~kmre-a~~e~~~~krk~e~lWpI~rI~hqrSRYIydlyYk~k~ISreLY~~~lk~~yaD~~L 88 (145)
.+++|+-.++.-.+..++=|++ +... .+ +.+. -.|=.+||+++||-|+.+
T Consensus 11 ~~~~G~~~l~kD~eA~~~y~~~~V~pn---t~----------~F~S----------------~~Erl~yLv~~~YYe~~~ 61 (82)
T PF08343_consen 11 YDEDGKIQLEKDKEAVRAYFKEHVNPN---TV----------KFNS----------------LKERLDYLVENDYYEKEV 61 (82)
T ss_dssp --TTS---THHHHHHHHHHHHHTTGGG---B-------------SS----------------HHHHHHHHHHTTSB-HHH
T ss_pred CCCCCCcCchhHHHHHHHHHHHhcccc---ee----------ecCC----------------HHHHHHHHHHcCcHHHHH
Confidence 3678887777777777777777 3211 00 1111 124578999999999999
Q ss_pred HHhh
Q 032189 89 IAKW 92 (145)
Q Consensus 89 IaKW 92 (145)
+++-
T Consensus 62 l~~Y 65 (82)
T PF08343_consen 62 LDKY 65 (82)
T ss_dssp HTTS
T ss_pred HHhC
Confidence 8775
No 28
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=26.25 E-value=45 Score=25.28 Aligned_cols=51 Identities=25% Similarity=0.407 Sum_probs=30.2
Q ss_pred HHHHHHHHhhCCCCCCCCC------------Cccccceeeccccc-------hhhhHhhhhhhhhhhHHHHHHHHhcc
Q 032189 24 ELQAKMREAENDPHDGKRK------------CETLWPIFKIAHQK-------SRYIFDLYYRRKEISKELYEFCLDQG 82 (145)
Q Consensus 24 e~~~kmrea~~e~~~~krk------------~e~lWpI~rI~hqr-------SRYIydlyYk~k~ISreLY~~~lk~~ 82 (145)
+++.+.|+|.|+..-|... .+.++.|+.+-|.| -|-|| |++ -|.+|||++|
T Consensus 1 ~~e~~vreATs~d~wGp~~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vy------KaL--~lleyLl~nG 70 (123)
T cd03571 1 EAELKVREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVY------KAL--TLLEYLLKNG 70 (123)
T ss_pred CHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHH------HHH--HHHHHHHHhC
Confidence 3577888888777655321 23344555444443 24444 223 3899999999
No 29
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=25.84 E-value=37 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCCCCChhchHHHHHHHHHHHHHhhCC
Q 032189 9 VKIPEGWELIEPTLRELQAKMREAEND 35 (145)
Q Consensus 9 k~pP~G~e~Ie~tL~e~~~kmrea~~e 35 (145)
-.||+-|+.|...|++.|+|..-...|
T Consensus 11 iv~~~d~~~i~~rLD~iEeKVEftn~E 37 (77)
T PRK01026 11 VVDPKDFKEIQKRLDEIEEKVEFTNAE 37 (77)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999998775443
No 30
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=24.45 E-value=52 Score=29.68 Aligned_cols=59 Identities=27% Similarity=0.665 Sum_probs=45.3
Q ss_pred cCHHHHHhhccccccccccccccccC-----------------CCCC-CcceEEeccc-cc---cccceeeccccc----
Q 032189 84 ADRNLIAKWKKPGYERLCCLRCMQPR-----------------DHNF-QTTCVCRVPK-NL---REEKVIECVHCG---- 137 (145)
Q Consensus 84 aD~~LIaKWkK~GYE~LCCl~CIq~~-----------------~~n~-gttCICRVPk-~l---~~~~~~~C~~CG---- 137 (145)
.+..|+--|-|.-|+=-|+..+..+- ++|| |.-|+|-+|- .+ +++.++||+-|-
T Consensus 80 ~~H~lveL~tKR~FrCDCg~sk~g~~sc~l~~~~~~~n~~N~YNhNfqG~~C~Cd~~Ypdp~~~~e~~m~QC~iCEDWFH 159 (345)
T KOG2752|consen 80 DGHELVELYTKRNFRCDCGNSKFGRCSCNLLEDKDAENSENLYNHNFQGLFCKCDTPYPDPVRTEEGEMLQCVICEDWFH 159 (345)
T ss_pred CCceeeeccccCCcccccccccccccccccccccccccchhhhhhhhcceeEEecCCCCCccccccceeeeEEeccchhc
Confidence 45678888999999999987665432 2455 8999998877 53 445679999999
Q ss_pred ccccc
Q 032189 138 CRGCA 142 (145)
Q Consensus 138 C~GCa 142 (145)
|-||.
T Consensus 160 ce~c~ 164 (345)
T KOG2752|consen 160 CEGCM 164 (345)
T ss_pred ccccC
Confidence 99985
No 31
>cd08793 Death_IRAK4 Death domain of Interleukin-1 Receptor-Associated Kinase 4. Death Domain (DD) of Interleukin-1 Receptor-Associated Kinase 4 (IRAK4). IRAKs are essential components of innate immunity and inflammation in mammals and other vertebrates. They are involved in signal transduction pathways involving IL-1 and IL-18 receptors, Toll-like receptors, nuclear factor-kappaB, and mitogen-activated protein kinases. IRAKs contain an N-terminal DD domain and a C-terminal kinase domain. IRAK4 is an active kinase that is also involved in T-cell receptor signaling pathways, implying that it may function in acquired immunity and not just in innate immunity. It is known as the master IRAK member because its absence strongly impairs TLR- and IL-1-mediated signaling and innate immune defenses, while the absence of other IRAK proteins only shows slight effects. IRAK4-deficient patients have impaired inflammatory responses and recurrent life-threatening infections. DDs are protein-protein int
Probab=23.66 E-value=21 Score=26.83 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=27.3
Q ss_pred CCCCChhchHHHHHH------HHH-HHHHhhCCCCCCCCCCccc
Q 032189 10 KIPEGWELIEPTLRE------LQA-KMREAENDPHDGKRKCETL 46 (145)
Q Consensus 10 ~pP~G~e~Ie~tL~e------~~~-kmrea~~e~~~~krk~e~l 46 (145)
-|+++|+.|...+.. |.. +++..|.....|+...+.|
T Consensus 19 Dp~~~W~~LA~~i~~~~~~~~y~~~ei~~ie~~~~~g~SPT~~L 62 (100)
T cd08793 19 DPQEGWKKIAVAIKKPSGDPRYSQFHIRRFEALVQQGKSPTCEL 62 (100)
T ss_pred CCcccHHHHHHHHhcccCCCCCCHHHHHHHHHHHHcCCChHHHH
Confidence 478999999999874 777 7888877655566555443
No 32
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=23.05 E-value=22 Score=24.32 Aligned_cols=14 Identities=43% Similarity=0.916 Sum_probs=12.0
Q ss_pred eeccccccccccCC
Q 032189 131 IECVHCGCRGCASG 144 (145)
Q Consensus 131 ~~C~~CGC~GCaS~ 144 (145)
-|||-||=.||+|.
T Consensus 23 RQCvlCGRWaC~sC 36 (57)
T PF14445_consen 23 RQCVLCGRWACNSC 36 (57)
T ss_pred HHHhhhchhhhhhh
Confidence 48999999999873
No 33
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=22.37 E-value=44 Score=21.23 Aligned_cols=13 Identities=38% Similarity=1.050 Sum_probs=10.4
Q ss_pred ccceeeccccccc
Q 032189 127 EEKVIECVHCGCR 139 (145)
Q Consensus 127 ~~~~~~C~~CGC~ 139 (145)
....+.|.+||++
T Consensus 16 ~~~~irC~~CG~r 28 (44)
T smart00659 16 SKDVVRCRECGYR 28 (44)
T ss_pred CCCceECCCCCce
Confidence 4557999999986
No 34
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=22.10 E-value=45 Score=20.15 Aligned_cols=19 Identities=16% Similarity=0.651 Sum_probs=13.4
Q ss_pred eccc-cccc-cceeecccccc
Q 032189 120 RVPK-NLRE-EKVIECVHCGC 138 (145)
Q Consensus 120 RVPk-~l~~-~~~~~C~~CGC 138 (145)
+||. ++.+ +..++|.+||-
T Consensus 13 ~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 13 EIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred eCCHHHCCCCCcEEECCCCCC
Confidence 4676 5543 56799999984
No 35
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=21.86 E-value=65 Score=28.03 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=26.3
Q ss_pred cccceeeccccchhhhHhhhhhhhhhhHHHHHHHHhcc
Q 032189 45 TLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQG 82 (145)
Q Consensus 45 ~lWpI~rI~hqrSRYIydlyYk~k~ISreLY~~~lk~~ 82 (145)
-+||+|+++.-+-+--++-+-..+...+.|=|||-.||
T Consensus 234 g~~plye~~~g~~~~~~~~~~ld~~~~~pv~~~l~~q~ 271 (299)
T PRK11865 234 GYWPLFEIENGKFKITYEPLHLDRRTRKPIEEYLKVQG 271 (299)
T ss_pred CceeEEEEECCeeccCCCcccccccCCCCHHHHHhhCc
Confidence 69999999998755444333222344567999998876
No 36
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=21.80 E-value=40 Score=22.87 Aligned_cols=21 Identities=38% Similarity=0.741 Sum_probs=15.7
Q ss_pred Eeccc-cccccceeeccccccc
Q 032189 119 CRVPK-NLREEKVIECVHCGCR 139 (145)
Q Consensus 119 CRVPk-~l~~~~~~~C~~CGC~ 139 (145)
|-|++ ++......+|..||=.
T Consensus 2 Cpv~~~~~~~~v~~~Cp~cGip 23 (55)
T PF13824_consen 2 CPVCKKDLPAHVNFECPDCGIP 23 (55)
T ss_pred CCCCccccccccCCcCCCCCCc
Confidence 67787 7766667899999843
No 37
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=21.54 E-value=64 Score=25.51 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.0
Q ss_pred CCCCChhchHHHHHHHHHHHHHhhCCCC
Q 032189 10 KIPEGWELIEPTLRELQAKMREAENDPH 37 (145)
Q Consensus 10 ~pP~G~e~Ie~tL~e~~~kmrea~~e~~ 37 (145)
--+++|++|...|.+|-.++....++..
T Consensus 129 vs~~~~~ki~~~i~~fRk~i~~i~~~~~ 156 (171)
T PF14394_consen 129 VSREDYEKIKKEIREFRKKIIAIAEEDK 156 (171)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3478999999999999999999877753
No 38
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=20.83 E-value=50 Score=19.41 Aligned_cols=18 Identities=33% Similarity=0.708 Sum_probs=12.6
Q ss_pred eccc-ccc-ccceeeccccc
Q 032189 120 RVPK-NLR-EEKVIECVHCG 137 (145)
Q Consensus 120 RVPk-~l~-~~~~~~C~~CG 137 (145)
+||. ++. .+..+.|.+||
T Consensus 13 ~v~~~~~~~~~~~v~C~~C~ 32 (38)
T TIGR02098 13 RVVDSQLGANGGKVRCGKCG 32 (38)
T ss_pred EeCHHHcCCCCCEEECCCCC
Confidence 5777 553 34468999997
No 39
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=20.65 E-value=47 Score=23.73 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.9
Q ss_pred CCCCCChhchHHHHHHHHHHHHHhhC
Q 032189 9 VKIPEGWELIEPTLRELQAKMREAEN 34 (145)
Q Consensus 9 k~pP~G~e~Ie~tL~e~~~kmrea~~ 34 (145)
-.||+-|..|...|++.++|..-...
T Consensus 8 ~v~~~d~~~i~~rLd~iEeKVEf~~~ 33 (70)
T TIGR01149 8 FVEPDEFNEVMKRLDEIEEKVEFVNG 33 (70)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999876543
Done!