Query 032189
Match_columns 145
No_of_seqs 103 out of 155
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 17:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jmt_B Splicing factor U2AF 65 55.2 3 0.0001 24.1 0.3 13 8-20 8-20 (28)
2 2d4p_A Hypothetical protein TT 49.6 5.4 0.00018 30.0 1.0 51 50-101 56-119 (141)
3 3nrw_A Phage integrase/site-sp 44.2 9 0.00031 25.5 1.4 24 72-95 84-107 (117)
4 3o70_A PHD finger protein 13; 44.1 8 0.00027 25.3 1.1 26 110-137 15-40 (68)
5 1ou8_A Stringent starvation pr 41.1 12 0.00039 27.7 1.7 14 70-83 12-25 (111)
6 1yfn_A Stringent starvation pr 39.9 12 0.00042 27.8 1.7 14 70-83 13-26 (118)
7 3i5p_A Nucleoporin NUP170; hel 39.9 10 0.00035 33.8 1.5 23 66-88 176-198 (525)
8 3lys_A Prophage PI2 protein 01 39.9 8.9 0.0003 25.1 0.8 29 71-99 79-107 (112)
9 1xgw_A Epsin 4; ENTH, enthopro 38.4 19 0.00065 28.0 2.6 53 23-83 33-105 (176)
10 1ou9_A Stringent starvation pr 36.1 15 0.00052 27.7 1.7 14 70-83 12-25 (129)
11 3o7a_A PHD finger protein 13 v 30.8 14 0.00047 22.6 0.6 22 114-137 4-25 (52)
12 1r48_A Proline/betaine transpo 29.4 42 0.0014 19.6 2.5 20 14-33 2-21 (33)
13 3epz_A DNA (cytosine-5)-methyl 28.1 28 0.00096 29.1 2.2 35 47-81 153-187 (268)
14 2wbn_A G2P, terminase large su 26.0 16 0.00053 28.1 0.2 50 49-98 68-128 (212)
15 2lv9_A Histone-lysine N-methyl 25.8 18 0.00061 25.0 0.5 22 115-138 29-50 (98)
16 1we9_A PHD finger family prote 25.4 31 0.0011 21.5 1.5 26 111-137 3-29 (64)
17 2key_A Putative phage integras 24.7 41 0.0014 21.4 2.1 24 72-95 83-106 (112)
18 3onk_A Epsin-3, ENT3; helix, p 24.2 28 0.00094 26.3 1.3 52 24-83 11-82 (150)
19 1x4i_A Inhibitor of growth pro 24.1 26 0.00089 23.0 1.0 25 111-138 3-27 (70)
20 2kj5_A Phage integrase; GFT PS 23.7 34 0.0012 21.8 1.6 24 72-95 80-103 (116)
21 2kkp_A Phage integrase; SAM-li 23.2 34 0.0012 21.7 1.5 23 72-94 83-105 (117)
22 3kqi_A GRC5, PHD finger protei 23.0 22 0.00075 23.2 0.5 27 110-137 6-32 (75)
23 2oxo_A Integrase; DNA-binding 22.8 23 0.0008 21.4 0.5 22 72-93 75-96 (103)
24 2khq_A Integrase; all-alpha, s 22.7 35 0.0012 21.5 1.5 22 72-93 76-97 (110)
25 2kob_A Uncharacterized protein 21.8 38 0.0013 21.2 1.4 20 72-91 74-93 (108)
26 3a52_A Cold-active alkaline ph 20.7 36 0.0012 29.1 1.5 42 52-99 116-163 (400)
No 1
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=55.23 E-value=3 Score=24.06 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=11.0
Q ss_pred CCCCCCChhchHH
Q 032189 8 RVKIPEGWELIEP 20 (145)
Q Consensus 8 ~k~pP~G~e~Ie~ 20 (145)
.-.||+|||.|-|
T Consensus 8 WDvpP~GyE~vtp 20 (28)
T 1jmt_B 8 WDVPPPGFEHITP 20 (28)
T ss_dssp BTCCCTTCTTSCH
T ss_pred cCCCCCCccccCH
Confidence 3679999999877
No 2
>2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein STR and functional analyses; 1.70A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 2d4o_A
Probab=49.58 E-value=5.4 Score=29.97 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=39.2
Q ss_pred eeccccchhhhHhhhhhhhhhhHHHHHH----HHhcccc---------CHHHHHhhccccccccc
Q 032189 50 FKIAHQKSRYIFDLYYRRKEISKELYEF----CLDQGYA---------DRNLIAKWKKPGYERLC 101 (145)
Q Consensus 50 ~rI~hqrSRYIydlyYk~k~ISreLY~~----~lk~~ya---------D~~LIaKWkK~GYE~LC 101 (145)
+.- =.|.=|||||+|+++-|.+.|.+. +.++|.. +....+-|.+.||..-=
T Consensus 56 i~g-dg~~~~L~dl~~R~~GIG~~Ll~~a~~~a~~~G~~rv~L~~~~~N~~a~~fye~~Gf~~~~ 119 (141)
T 2d4p_A 56 WQG-EATTVLVTRIEGRSVEALRGLLRAVVKSAYDAGVYEVALHLDPERKELEEALKAEGFALGP 119 (141)
T ss_dssp ECS-SSEEEEEEEEEESSHHHHHHHHHHHHHHHHHTTCSEEEECCCTTCHHHHHHHHHTTCCCCS
T ss_pred EEc-CCeEEEEeHHhhccccHHHHHHHHHHHHHHHCCCCEEEEEecccCHHHHHHHHHCCCEecC
Confidence 355 788899999999999999998765 4555532 24578899999998643
No 3
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=44.15 E-value=9 Score=25.53 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=19.9
Q ss_pred HHHHHHHHhccccCHHHHHhhccc
Q 032189 72 KELYEFCLDQGYADRNLIAKWKKP 95 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKWkK~ 95 (145)
|-+|+|++++|+++.|..+.-+.+
T Consensus 84 r~f~~~l~~~g~i~~nP~~~v~~p 107 (117)
T 3nrw_A 84 KNWLEYLARIDVVDEDLPEKVHVP 107 (117)
T ss_dssp HHHHHHHHHTTSSCTTSGGGCCCC
T ss_pred HHHHHHHHHcCCcccCHHHHccCC
Confidence 458999999999999988766554
No 4
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=44.11 E-value=8 Score=25.34 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=18.6
Q ss_pred CCCCCcceEEeccccccccceeeccccc
Q 032189 110 DHNFQTTCVCRVPKNLREEKVIECVHCG 137 (145)
Q Consensus 110 ~~n~gttCICRVPk~l~~~~~~~C~~CG 137 (145)
+.+.+..|||+.|.. .+..|+|..|.
T Consensus 15 ~~~~~~~CiC~~~~~--~~~MIqCd~C~ 40 (68)
T 3o70_A 15 YFQGLVTCFCMKPFA--GRPMIECNECH 40 (68)
T ss_dssp TTTTCCCSTTCCCCT--TCCEEECTTTC
T ss_pred CCCCceEeECCCcCC--CCCEEECCCCC
Confidence 344578899998853 23579998875
No 5
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=41.05 E-value=12 Score=27.67 Aligned_cols=14 Identities=14% Similarity=0.683 Sum_probs=12.0
Q ss_pred hhHHHHHHHHhccc
Q 032189 70 ISKELYEFCLDQGY 83 (145)
Q Consensus 70 ISreLY~~~lk~~y 83 (145)
+=|.+||||+++++
T Consensus 12 LiRA~yeWi~DN~~ 25 (111)
T 1ou8_A 12 LLRAYYDWLVDNSF 25 (111)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC
Confidence 45789999999996
No 6
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=39.91 E-value=12 Score=27.80 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=12.2
Q ss_pred hhHHHHHHHHhccc
Q 032189 70 ISKELYEFCLDQGY 83 (145)
Q Consensus 70 ISreLY~~~lk~~y 83 (145)
+=|.+||||+++++
T Consensus 13 LiRA~yeWi~DN~~ 26 (118)
T 1yfn_A 13 LLRAFYEWLLDNQL 26 (118)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCC
Confidence 55789999999996
No 7
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=39.90 E-value=10 Score=33.84 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=17.7
Q ss_pred hhhhhhHHHHHHHHhccccCHHH
Q 032189 66 RRKEISKELYEFCLDQGYADRNL 88 (145)
Q Consensus 66 k~k~ISreLY~~~lk~~yaD~~L 88 (145)
+.+.+--.||+|++.+|..|.-|
T Consensus 176 ~DelFH~~LYdWli~~gl~d~LL 198 (525)
T 3i5p_A 176 NDRLFHYHMYDWLVSQNREEKLL 198 (525)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGGG
T ss_pred ChHHHHHHHHHHHHhCCCcchhh
Confidence 45556667999999999887643
No 8
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=39.90 E-value=8.9 Score=25.11 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=25.3
Q ss_pred hHHHHHHHHhccccCHHHHHhhccccccc
Q 032189 71 SKELYEFCLDQGYADRNLIAKWKKPGYER 99 (145)
Q Consensus 71 SreLY~~~lk~~yaD~~LIaKWkK~GYE~ 99 (145)
=+.+++|.+++|+++.|-.+.=+.+|-|-
T Consensus 79 l~~i~~~Av~~g~i~~NP~~~v~~~~~~~ 107 (112)
T 3lys_A 79 VRASIQCLIEEGRLQKDFTTRAVVKGLEH 107 (112)
T ss_dssp HHHHHHHHHHTTSCSSCTTSSTTCCCCCC
T ss_pred HHHHHHHHHHCCCcccCccccceeccccc
Confidence 35799999999999999999999998763
No 9
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=38.39 E-value=19 Score=27.95 Aligned_cols=53 Identities=25% Similarity=0.423 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhCCCCCCCC------------CCccccceeeccccch--------hhhHhhhhhhhhhhHHHHHHHHhcc
Q 032189 23 RELQAKMREAENDPHDGKR------------KCETLWPIFKIAHQKS--------RYIFDLYYRRKEISKELYEFCLDQG 82 (145)
Q Consensus 23 ~e~~~kmrea~~e~~~~kr------------k~e~lWpI~rI~hqrS--------RYIydlyYk~k~ISreLY~~~lk~~ 82 (145)
.+.+.+.|+|.|...-|.. ..+.++.|+.+-|.|- |-|| |++ -|.||||++|
T Consensus 33 s~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vy------KaL--~LLeYLl~nG 104 (176)
T 1xgw_A 33 SEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVY------KSL--LLLAYLIRNG 104 (176)
T ss_dssp CHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHH------HHH--HHHHHHHHHS
T ss_pred CHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHH------HHH--HHHHHHHHhC
Confidence 3566788999988766642 2456777777777761 3333 223 3999999999
Q ss_pred c
Q 032189 83 Y 83 (145)
Q Consensus 83 y 83 (145)
-
T Consensus 105 s 105 (176)
T 1xgw_A 105 S 105 (176)
T ss_dssp C
T ss_pred C
Confidence 4
No 10
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=36.12 E-value=15 Score=27.74 Aligned_cols=14 Identities=14% Similarity=0.683 Sum_probs=12.0
Q ss_pred hhHHHHHHHHhccc
Q 032189 70 ISKELYEFCLDQGY 83 (145)
Q Consensus 70 ISreLY~~~lk~~y 83 (145)
+=|.+||||+++++
T Consensus 12 LiRA~yeWi~DN~~ 25 (129)
T 1ou9_A 12 LLRAYYDWLVDNSF 25 (129)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC
Confidence 45789999999996
No 11
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=30.82 E-value=14 Score=22.60 Aligned_cols=22 Identities=36% Similarity=0.797 Sum_probs=16.1
Q ss_pred CcceEEeccccccccceeeccccc
Q 032189 114 QTTCVCRVPKNLREEKVIECVHCG 137 (145)
Q Consensus 114 gttCICRVPk~l~~~~~~~C~~CG 137 (145)
...|||+.|.. .+.+|+|-.|.
T Consensus 4 ~~~C~C~~~~~--~~~MI~Cd~C~ 25 (52)
T 3o7a_A 4 LVTCFCMKPFA--GRPMIECNECH 25 (52)
T ss_dssp CBCSTTCCBCT--TCCEEECTTTC
T ss_pred CeEEEeCCcCC--CCCEEEcCCCC
Confidence 45799998853 34689998875
No 12
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=29.41 E-value=42 Score=19.56 Aligned_cols=20 Identities=15% Similarity=0.405 Sum_probs=17.3
Q ss_pred ChhchHHHHHHHHHHHHHhh
Q 032189 14 GWELIEPTLRELQAKMREAE 33 (145)
Q Consensus 14 G~e~Ie~tL~e~~~kmrea~ 33 (145)
|.+.|+-.++.++++..+++
T Consensus 2 ~~Dnie~~iedi~~ei~~l~ 21 (33)
T 1r48_A 2 GGDNIEQKIDDIDHEIADLQ 21 (33)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHhhhhHHHHHHHHH
Confidence 78889999999998888875
No 13
>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal BIND binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens}
Probab=28.14 E-value=28 Score=29.15 Aligned_cols=35 Identities=26% Similarity=0.159 Sum_probs=26.0
Q ss_pred cceeeccccchhhhHhhhhhhhhhhHHHHHHHHhc
Q 032189 47 WPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQ 81 (145)
Q Consensus 47 WpI~rI~hqrSRYIydlyYk~k~ISreLY~~~lk~ 81 (145)
|=|..=....=+=+|+.||.+--+|+++|++|.++
T Consensus 153 dY~L~kPS~~Yk~~~~~f~eK~~~s~~Vie~L~~~ 187 (268)
T 3epz_A 153 EYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSN 187 (268)
T ss_dssp EEEECCBCTTTHHHHTTCCHHHHHHHHHHHHHHHC
T ss_pred EEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333333333448999999999999999999997
No 14
>2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB: 2wc9_A
Probab=25.98 E-value=16 Score=28.14 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=39.1
Q ss_pred eeeccc-cchhhhHhhhhhhhhhhHHHHHHHHhccc---------cCHHHHHhhccc-ccc
Q 032189 49 IFKIAH-QKSRYIFDLYYRRKEISKELYEFCLDQGY---------ADRNLIAKWKKP-GYE 98 (145)
Q Consensus 49 I~rI~h-qrSRYIydlyYk~k~ISreLY~~~lk~~y---------aD~~LIaKWkK~-GYE 98 (145)
.+.+.. .+.=||++-||.++.-..++.+++.+.+| |.+.+|+-.++. |+.
T Consensus 68 ~~~~d~~~~~lyi~~E~y~~~~~~~~~a~~i~~~~~~~~~i~~DsA~~~~I~~l~~~~G~~ 128 (212)
T 2wbn_A 68 RWHYDKRKNRIYAIDELVDHKVSLKRTADFVRKNKYESARIIADSSEPRSIDALKLEHGIN 128 (212)
T ss_dssp EEEEETTTTEEEEEEEEEESSCCHHHHHHHHHHTTCTTSCEEECTTCHHHHHHHHHTTCCT
T ss_pred EEEEECCCCEEEEEEehhhcCCCHHHHHHHHHHcCCCCceeeeCCcCHHHHHHHHHhCCcc
Confidence 344543 46789999999988888899999887765 577899999986 873
No 15
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=25.77 E-value=18 Score=25.02 Aligned_cols=22 Identities=27% Similarity=0.779 Sum_probs=16.4
Q ss_pred cceEEeccccccccceeecccccc
Q 032189 115 TTCVCRVPKNLREEKVIECVHCGC 138 (145)
Q Consensus 115 ttCICRVPk~l~~~~~~~C~~CGC 138 (145)
+.|||++|. +.+.+|+|..|.-
T Consensus 29 vrCiC~~~~--~~~~mi~Cd~C~~ 50 (98)
T 2lv9_A 29 TRCICGFTH--DDGYMICCDKCSV 50 (98)
T ss_dssp CCCTTSCCS--CSSCEEEBTTTCB
T ss_pred EEeECCCcc--CCCcEEEcCCCCC
Confidence 679999985 2356899988753
No 16
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.41 E-value=31 Score=21.51 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=17.6
Q ss_pred CCCCcce-EEeccccccccceeeccccc
Q 032189 111 HNFQTTC-VCRVPKNLREEKVIECVHCG 137 (145)
Q Consensus 111 ~n~gttC-ICRVPk~l~~~~~~~C~~CG 137 (145)
.+.++.| ||+.|-. ..+..|+|..|.
T Consensus 3 ~~e~~~C~~C~~~~~-~~~~mI~Cd~C~ 29 (64)
T 1we9_A 3 SGSSGQCGACGESYA-ADEFWICCDLCE 29 (64)
T ss_dssp CSSCCCCSSSCCCCC-SSSCEEECSSSC
T ss_pred CCCCCCCCCCCCccC-CCCCEEEccCCC
Confidence 3457789 9998852 124578998763
No 17
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=24.73 E-value=41 Score=21.41 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=18.9
Q ss_pred HHHHHHHHhccccCHHHHHhhccc
Q 032189 72 KELYEFCLDQGYADRNLIAKWKKP 95 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKWkK~ 95 (145)
|.+|+|++++|+++.|-...-+.+
T Consensus 83 r~~~~~a~~~~~i~~nP~~~v~~p 106 (112)
T 2key_A 83 KIYVSAAIKKGYMENDPFKDFGLE 106 (112)
T ss_dssp HHHHHHHHHTTSCCSCHHHHHTCC
T ss_pred HHHHHHHHHCCCcccCCcccCCCc
Confidence 468999999999998877665544
No 18
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=24.16 E-value=28 Score=26.28 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=33.1
Q ss_pred HHHHHHHHhhCCCCCCCC------------CCccccceeeccccc--------hhhhHhhhhhhhhhhHHHHHHHHhccc
Q 032189 24 ELQAKMREAENDPHDGKR------------KCETLWPIFKIAHQK--------SRYIFDLYYRRKEISKELYEFCLDQGY 83 (145)
Q Consensus 24 e~~~kmrea~~e~~~~kr------------k~e~lWpI~rI~hqr--------SRYIydlyYk~k~ISreLY~~~lk~~y 83 (145)
+++.+.|+|.|..+-|.. ..+.++.|+.+-|.| =|.|| |++ -|.||||++|-
T Consensus 11 ~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vy------KaL--~lLeyLl~nGs 82 (150)
T 3onk_A 11 EMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIY------KAL--QLLDYLIKHGS 82 (150)
T ss_dssp HHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHH------HHH--HHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHH------HHH--HHHHHHHHhCC
Confidence 678889999987766642 234456666555544 23333 223 39999999993
No 19
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.06 E-value=26 Score=22.97 Aligned_cols=25 Identities=16% Similarity=0.513 Sum_probs=18.8
Q ss_pred CCCCcceEEeccccccccceeecccccc
Q 032189 111 HNFQTTCVCRVPKNLREEKVIECVHCGC 138 (145)
Q Consensus 111 ~n~gttCICRVPk~l~~~~~~~C~~CGC 138 (145)
.+-..-|||+-|. .+.+|+|-+|.|
T Consensus 3 ~~~~~yC~C~~~~---~g~MI~CD~cdC 27 (70)
T 1x4i_A 3 SGSSGYCICNQVS---YGEMVGCDNQDC 27 (70)
T ss_dssp CSCCCCSTTSCCC---CSSEECCSCTTC
T ss_pred CCCCeEEEcCCCC---CCCEeEeCCCCC
Confidence 4456789998763 346899999987
No 20
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=23.70 E-value=34 Score=21.85 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=19.1
Q ss_pred HHHHHHHHhccccCHHHHHhhccc
Q 032189 72 KELYEFCLDQGYADRNLIAKWKKP 95 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKWkK~ 95 (145)
+.+|+|++++|+++.|-+..-+.+
T Consensus 80 ~~~~~~A~~~~~i~~NP~~~i~~p 103 (116)
T 2kj5_A 80 KRMFNYAIKRHIIEYNPAAAFDPG 103 (116)
T ss_dssp HHHHHHHHHTTSCSSCGGGGSCCC
T ss_pred HHHHHHHHHcCccccCchhhCCCC
Confidence 468999999999998877665544
No 21
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=23.20 E-value=34 Score=21.71 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=16.7
Q ss_pred HHHHHHHHhccccCHHHHHhhcc
Q 032189 72 KELYEFCLDQGYADRNLIAKWKK 94 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKWkK 94 (145)
+.+|+|++++|+++.|-...-+.
T Consensus 83 ~~~~~~A~~~~~i~~nP~~~i~~ 105 (117)
T 2kkp_A 83 HEAMSQARESGLLLQNPTEAAKP 105 (117)
T ss_dssp HHHHHHHHTTTSCSSCGGGGSCC
T ss_pred HHHHHHHHHCCCcccCccccCCC
Confidence 46788999999888776654443
No 22
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=22.98 E-value=22 Score=23.22 Aligned_cols=27 Identities=33% Similarity=0.712 Sum_probs=18.9
Q ss_pred CCCCCcceEEeccccccccceeeccccc
Q 032189 110 DHNFQTTCVCRVPKNLREEKVIECVHCG 137 (145)
Q Consensus 110 ~~n~gttCICRVPk~l~~~~~~~C~~CG 137 (145)
..+.+..|||+.|-. ..+.+|+|..|.
T Consensus 6 ~~~~~~yCiC~~~~~-~~~~MI~Cd~C~ 32 (75)
T 3kqi_A 6 MATVPVYCVCRLPYD-VTRFMIECDACK 32 (75)
T ss_dssp TCCCCEETTTTEECC-TTSCEEECTTTC
T ss_pred CCCCeeEEECCCcCC-CCCCEEEcCCCC
Confidence 345678999998852 134579998875
No 23
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=22.75 E-value=23 Score=21.42 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=15.9
Q ss_pred HHHHHHHHhccccCHHHHHhhc
Q 032189 72 KELYEFCLDQGYADRNLIAKWK 93 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKWk 93 (145)
+.+|+|++++|+++.|-...-+
T Consensus 75 ~~~~~~a~~~~~i~~nP~~~v~ 96 (103)
T 2oxo_A 75 SDAFREAIAEGHITTNHVAATR 96 (103)
T ss_dssp HHHHHHHHHTTSCSSCTTC---
T ss_pred HHHHHHHHHcCCCCCChHhhcC
Confidence 5789999999999887655443
No 24
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=22.73 E-value=35 Score=21.48 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=17.6
Q ss_pred HHHHHHHHhccccCHHHHHhhc
Q 032189 72 KELYEFCLDQGYADRNLIAKWK 93 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKWk 93 (145)
+.+|+|++++|+++.|-.+.-+
T Consensus 76 ~~~~~~a~~~~~i~~NP~~~v~ 97 (110)
T 2khq_A 76 RNAFDDAIHEGYVIKNPTYKAE 97 (110)
T ss_dssp HHHHHHHHHTTCCCCCGGGGCC
T ss_pred HHHHHHHHHCCCcccCcccccc
Confidence 5789999999999888766544
No 25
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=21.78 E-value=38 Score=21.19 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=15.7
Q ss_pred HHHHHHHHhccccCHHHHHh
Q 032189 72 KELYEFCLDQGYADRNLIAK 91 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaK 91 (145)
+.+|+|++++|+++.|-...
T Consensus 74 ~~~~~~A~~~~~i~~NP~~~ 93 (108)
T 2kob_A 74 SQIFRLAIENRAIDFNPADY 93 (108)
T ss_dssp HHHHHHHHHTTSSSSCGGGT
T ss_pred HHHHHHHHHcCCcccCcccc
Confidence 56889999999988776553
No 26
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Probab=20.72 E-value=36 Score=29.15 Aligned_cols=42 Identities=21% Similarity=0.510 Sum_probs=27.9
Q ss_pred ccccchhhhHhhhhhhhhhhHHHHHHHHh------ccccCHHHHHhhccccccc
Q 032189 52 IAHQKSRYIFDLYYRRKEISKELYEFCLD------QGYADRNLIAKWKKPGYER 99 (145)
Q Consensus 52 I~hqrSRYIydlyYk~k~ISreLY~~~lk------~~yaD~~LIaKWkK~GYE~ 99 (145)
..|..+|-=| ..|..+|.+-=++ ..|-+++||..|+..||.-
T Consensus 116 ~ah~~~R~~~------~~IA~ql~~~~~dv~~GGG~~~f~~~L~~~~~~~Gy~~ 163 (400)
T 3a52_A 116 LTHNESRKNY------EAIAADMLKSDADVILGGGRKYFSEALVSQFSAKGYQH 163 (400)
T ss_dssp HCCBSCTTCH------HHHHHHHHHHTCSEEEEECGGGCCHHHHHHHHHTTCEE
T ss_pred hcCCCccccH------HHHHHHHhhcCCeEEEeCChhccChHHHHHHHHCCCEE
Confidence 3466677543 3677777653222 1345899999999999974
Done!