Query 032189
Match_columns 145
No_of_seqs 103 out of 155
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 17:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032189.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032189hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ci0k1 a.60.16.1 (K:204-274) 39.2 3.6 0.00026 26.4 0.4 15 9-23 35-49 (71)
2 d1ou8a_ b.136.1.1 (A:) Stringe 38.7 6.2 0.00045 27.1 1.7 14 70-83 8-21 (106)
3 d1twfl_ g.41.9.2 (L:) RBP12 su 38.5 3.6 0.00026 24.7 0.3 16 124-139 15-30 (46)
4 d2ho2a1 b.72.1.1 (A:253-285) A 36.6 1.5 0.00011 24.8 -1.6 11 11-21 3-13 (33)
5 d1yfna1 b.136.1.1 (A:4-111) St 35.9 7.3 0.00053 26.8 1.7 14 70-83 10-23 (108)
6 d1ydxa1 d.287.1.2 (A:1-193) Bi 34.3 44 0.0032 21.6 5.6 19 15-33 146-164 (193)
7 d1a0pa1 a.60.9.1 (A:3-100) Rec 31.2 8.6 0.00063 24.1 1.3 30 58-87 55-93 (98)
8 d2qtva4 d.109.2.1 (A:627-768) 29.9 6 0.00044 28.4 0.4 12 87-98 42-53 (142)
9 d1hf2a2 c.102.1.1 (A:1-99) Cel 28.1 19 0.0014 24.4 2.8 28 13-40 16-43 (99)
10 d1weva_ g.50.1.2 (A:) PHD fing 26.2 11 0.00079 23.5 1.1 24 114-137 16-40 (88)
11 d2gana1 d.108.1.1 (A:1-182) Hy 25.6 8.4 0.00061 26.0 0.5 56 45-100 94-165 (182)
12 d1m0ja_ g.46.1.1 (A:) Metallot 24.8 9.9 0.00072 20.3 0.6 11 131-141 17-27 (28)
13 d1z4ea1 d.108.1.1 (A:4-153) Tr 24.7 12 0.0009 23.6 1.2 35 65-99 94-141 (150)
14 d2atra1 d.108.1.1 (A:1-137) Pr 20.7 25 0.0018 22.3 2.1 36 65-100 78-123 (137)
No 1
>d3ci0k1 a.60.16.1 (K:204-274) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=39.22 E-value=3.6 Score=26.36 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=13.1
Q ss_pred CCCCCChhchHHHHH
Q 032189 9 VKIPEGWELIEPTLR 23 (145)
Q Consensus 9 k~pP~G~e~Ie~tL~ 23 (145)
.+|++||+.|++.+.
T Consensus 35 ~RP~~Gw~sv~~F~~ 49 (71)
T d3ci0k1 35 QRPAKGWEDVDQFLA 49 (71)
T ss_dssp TCCTTCCSCHHHHHT
T ss_pred hCCcchhhhHHHHHh
Confidence 579999999999875
No 2
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]}
Probab=38.69 E-value=6.2 Score=27.05 Aligned_cols=14 Identities=14% Similarity=0.683 Sum_probs=11.8
Q ss_pred hhHHHHHHHHhccc
Q 032189 70 ISKELYEFCLDQGY 83 (145)
Q Consensus 70 ISreLY~~~lk~~y 83 (145)
+=|.+||||+++|+
T Consensus 8 LiRA~y~W~~Dn~~ 21 (106)
T d1ou8a_ 8 LLRAYYDWLVDNSF 21 (106)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHCCC
Confidence 44789999999995
No 3
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.46 E-value=3.6 Score=24.71 Aligned_cols=16 Identities=31% Similarity=0.850 Sum_probs=13.5
Q ss_pred cccccceeeccccccc
Q 032189 124 NLREEKVIECVHCGCR 139 (145)
Q Consensus 124 ~l~~~~~~~C~~CGC~ 139 (145)
.|..+..+.|..||+|
T Consensus 15 ~l~~~d~irCreCG~R 30 (46)
T d1twfl_ 15 SLSRTDAVRCKDCGHR 30 (46)
T ss_dssp CCCTTSTTCCSSSCCC
T ss_pred EeCCCCcEEeccCCcE
Confidence 5677788999999987
No 4
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.58 E-value=1.5 Score=24.81 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=8.5
Q ss_pred CCCChhchHHH
Q 032189 11 IPEGWELIEPT 21 (145)
Q Consensus 11 pP~G~e~Ie~t 21 (145)
-|+||++|+++
T Consensus 3 LPpGW~ki~D~ 13 (33)
T d2ho2a1 3 LPAGWMRVQDT 13 (33)
T ss_dssp SCTTEEEEECS
T ss_pred CCCcceeeecC
Confidence 38899998763
No 5
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=35.93 E-value=7.3 Score=26.76 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=11.9
Q ss_pred hhHHHHHHHHhccc
Q 032189 70 ISKELYEFCLDQGY 83 (145)
Q Consensus 70 ISreLY~~~lk~~y 83 (145)
+=|.|||||+++|+
T Consensus 10 liRA~y~W~~Dn~~ 23 (108)
T d1yfna1 10 LLRAFYEWLLDNQL 23 (108)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHCCC
Confidence 45789999999995
No 6
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=34.26 E-value=44 Score=21.65 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=13.6
Q ss_pred hhchHHHHHHHHHHHHHhh
Q 032189 15 WELIEPTLRELQAKMREAE 33 (145)
Q Consensus 15 ~e~Ie~tL~e~~~kmrea~ 33 (145)
=..|...|+.+++++...+
T Consensus 146 Q~~I~~~l~~ld~~i~~~~ 164 (193)
T d1ydxa1 146 QHAIANTLSVFDERLENLA 164 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777888888777654
No 7
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=31.23 E-value=8.6 Score=24.11 Aligned_cols=30 Identities=7% Similarity=0.375 Sum_probs=18.5
Q ss_pred hhhHhhh---hhhhhhhHH------HHHHHHhccccCHH
Q 032189 58 RYIFDLY---YRRKEISKE------LYEFCLDQGYADRN 87 (145)
Q Consensus 58 RYIydly---Yk~k~ISre------LY~~~lk~~yaD~~ 87 (145)
.|+-.|. ++...|.+. +|.||+++|+++.|
T Consensus 55 ~yl~~l~~~g~s~~Ti~r~lsalr~ff~~l~~~~~i~~n 93 (98)
T d1a0pa1 55 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDD 93 (98)
T ss_dssp HHHHSCC-------CHHHHHHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHCCCcCcC
Confidence 4655543 233445544 69999999999866
No 8
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.91 E-value=6 Score=28.44 Aligned_cols=12 Identities=50% Similarity=1.212 Sum_probs=10.5
Q ss_pred HHHHhhcccccc
Q 032189 87 NLIAKWKKPGYE 98 (145)
Q Consensus 87 ~LIaKWkK~GYE 98 (145)
.-||.|+|+||.
T Consensus 42 ~~Ia~Wrkagy~ 53 (142)
T d2qtva4 42 EQIAQWRKAGYQ 53 (142)
T ss_dssp HHHHHHHHHTGG
T ss_pred cHHHHHHHcCCc
Confidence 679999999984
No 9
>d1hf2a2 c.102.1.1 (A:1-99) Cell-division inhibitor MinC, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=28.12 E-value=19 Score=24.36 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=23.2
Q ss_pred CChhchHHHHHHHHHHHHHhhCCCCCCC
Q 032189 13 EGWELIEPTLRELQAKMREAENDPHDGK 40 (145)
Q Consensus 13 ~G~e~Ie~tL~e~~~kmrea~~e~~~~k 40 (145)
+.|+.||+.|+|.++||.++-+=..+|.
T Consensus 16 ~~Y~~lE~llneI~~K~~~m~~FFa~gd 43 (99)
T d1hf2a2 16 KDYQNLEEVLNAISARITQMGGFFAKGD 43 (99)
T ss_dssp CCCSCHHHHHHHHHHHHHHTGGGCCTTC
T ss_pred cchhhHHHHHHHHHHHHHHHHhhhcCCC
Confidence 5689999999999999999876555553
No 10
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.25 E-value=11 Score=23.45 Aligned_cols=24 Identities=29% Similarity=0.730 Sum_probs=16.2
Q ss_pred Ccce-EEeccccccccceeeccccc
Q 032189 114 QTTC-VCRVPKNLREEKVIECVHCG 137 (145)
Q Consensus 114 gttC-ICRVPk~l~~~~~~~C~~CG 137 (145)
+.+| ||+.+-..+.+.+|.|..|+
T Consensus 16 ~~~C~iC~~~~~~~~~~~v~Cd~C~ 40 (88)
T d1weva_ 16 GLACVVCRQMTVASGNQLVECQECH 40 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSC
T ss_pred cCCccCCCCccCCCCCeEEEcCCCC
Confidence 3456 89876544556688888764
No 11
>d2gana1 d.108.1.1 (A:1-182) Hypothetical protein PH0736 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=25.60 E-value=8.4 Score=26.01 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=39.4
Q ss_pred cccceeeccccchhhhHhhh----hhhhhhhHHHHHHHHh----ccc--------cCHHHHHhhcccccccc
Q 032189 45 TLWPIFKIAHQKSRYIFDLY----YRRKEISKELYEFCLD----QGY--------ADRNLIAKWKKPGYERL 100 (145)
Q Consensus 45 ~lWpI~rI~hqrSRYIydly----Yk~k~ISreLY~~~lk----~~y--------aD~~LIaKWkK~GYE~L 100 (145)
..|..+..+..++-||..|+ |+.+-|.+.|.+++++ .|+ .+...+.-++|.||+.+
T Consensus 94 ~~~~~~~~~~~~~~~I~~l~V~p~~rg~GiG~~Ll~~~~~~ak~~G~~~~l~~~~~n~~a~~fY~k~GF~~~ 165 (182)
T d2gana1 94 IWWVPEELMNEKVGLIEFFVVDPEFQGKGIGSTLLEFAVKRLRSLGKDPYVVTFPNLEAYSYYYMKKGFREI 165 (182)
T ss_dssp CTTCCGGGCSTTEEEEEEEEECTTSTTSSHHHHHHHHHHHHHHHTTCEEEEEECGGGSHHHHHHHTTTEEEE
T ss_pred ccccccccCCCCEEEEEEEEECHhhcCCCHHHHHHHHHHHHHHHcCCeEEEEEccCCHHHHHHHHHCCCEEe
Confidence 45666666677888888887 7888899888877665 443 22345667888888764
No 12
>d1m0ja_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}
Probab=24.82 E-value=9.9 Score=20.28 Aligned_cols=11 Identities=36% Similarity=1.497 Sum_probs=8.7
Q ss_pred eeccccccccc
Q 032189 131 IECVHCGCRGC 141 (145)
Q Consensus 131 ~~C~~CGC~GC 141 (145)
-.|.+|.|..|
T Consensus 17 ctctncscksc 27 (28)
T d1m0ja_ 17 CTCTNCSCKSC 27 (28)
T ss_dssp CCSSSCCCTTT
T ss_pred eeecCcccccC
Confidence 46788988887
No 13
>d1z4ea1 d.108.1.1 (A:4-153) Transcriptional regulator BH1968 {Bacillus halodurans [TaxId: 86665]}
Probab=24.72 E-value=12 Score=23.59 Aligned_cols=35 Identities=14% Similarity=0.384 Sum_probs=25.4
Q ss_pred hhhhhhhHHHHHHHHhc----ccc---------CHHHHHhhccccccc
Q 032189 65 YRRKEISKELYEFCLDQ----GYA---------DRNLIAKWKKPGYER 99 (145)
Q Consensus 65 Yk~k~ISreLY~~~lk~----~ya---------D~~LIaKWkK~GYE~ 99 (145)
|+++-|.+.|++++++. |+- +...++-|+|.||++
T Consensus 94 ~rg~Gig~~l~~~~~~~a~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~ 141 (150)
T d1z4ea1 94 ARGQGIGSQLVCWAIERAKERGCHLIQLTTDKQRPDALRFYEQLGFKA 141 (150)
T ss_dssp STTSSHHHHHHHHHHHHHHHTTEEEEEEEEETTCTTHHHHHHHHTCEE
T ss_pred HcCCChhHHHHHHHHHHHHHcCCCEEEEEEcCCCHHHHHHHHHCCCEE
Confidence 57778999998886654 321 345788999999975
No 14
>d2atra1 d.108.1.1 (A:1-137) Probable acetyltransferase SP0256 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=20.68 E-value=25 Score=22.32 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=29.0
Q ss_pred hhhhhhhHHHHHHHHhcc----------ccCHHHHHhhcccccccc
Q 032189 65 YRRKEISKELYEFCLDQG----------YADRNLIAKWKKPGYERL 100 (145)
Q Consensus 65 Yk~k~ISreLY~~~lk~~----------yaD~~LIaKWkK~GYE~L 100 (145)
|+++-|.+.|.+.+++.= .++...+.-|+|.||+.+
T Consensus 78 ~rg~GiG~~Ll~~~~~~~~~~~~~~i~l~~~~~a~~fY~k~GF~~~ 123 (137)
T d2atra1 78 YQRQGIGSSLMKEALGNFKEAYQVQLATEETEKNVGFYRSMGFEIL 123 (137)
T ss_dssp SCSSSHHHHHHHHHHGGGTTCSEEECCCCCCHHHHHHHHHTTCCCG
T ss_pred HcCchHHHHHHHHHHHHHHHCCCeEEEEeecHHHHHHHHhCCCEEC
Confidence 688889999999998752 246778899999999863
Done!