BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032190
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1D7Q|A Chain A, Human Translation Initiation Factor Eif1a
Length = 143
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/99 (78%), Positives = 85/99 (85%)
Query: 18 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDII 77
E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI DII
Sbjct: 17 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDII 76
Query: 78 LVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 116
LVGLRDYQD+KADVILKY DEAR LKAYGELPE ++N
Sbjct: 77 LVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 115
>pdb|2OQK|A Chain A, Crystal Structure Of Putative Cryptosporidium Parvum
Translation Initiation Factor Eif-1a
Length = 117
Score = 147 bits (370), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 66/99 (66%), Positives = 81/99 (81%)
Query: 18 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDII 77
+++ +KRELVFKE+GQEY QV R LGNGR +A C DG KRLCHIRGK KKVW+ GDI+
Sbjct: 18 DSEGDKRELVFKEEGQEYGQVQRXLGNGRLDAYCFDGQKRLCHIRGKXRKKVWVNPGDIV 77
Query: 78 LVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 116
LV LRD+QD K D+ILKY PDEAR LK+ GE+PE+T++N
Sbjct: 78 LVSLRDFQDSKGDIILKYTPDEARALKSKGEIPETTKIN 116
>pdb|1JT8|A Chain A, Archaeal Initiation Factor-1a, Aif-1a
Length = 102
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 29 KEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ-DD 87
KE+ + + +MLG R C+DG RL I G++ ++W+ GD+++V + Q D
Sbjct: 17 KEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQ 76
Query: 88 KADVILKYMPDEARLLKAYGELPE 111
K D+I +Y + LK G L E
Sbjct: 77 KCDIIWRYTKTQVEWLKRKGYLDE 100
>pdb|2DGY|A Chain A, Solution Structure Of The Eukaryotic Initiation Factor 1a
In Mgc11102 Protein
Length = 111
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 25 ELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILV-GLRD 83
E + + Q+ +VLR GN E G + L + K K +WI GD ++V + +
Sbjct: 8 EHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEE 67
Query: 84 YQDDKADVILKYMPDEARLLKAYGELPES 112
+ KA++ D R L+ G PE+
Sbjct: 68 GEKVKAEISFVLCKDHVRSLQKEGFWPEA 96
>pdb|1NUI|A Chain A, Crystal Structure Of The Primase Fragment Of Bacteriophage
T7 Primase- Helicase Protein
pdb|1NUI|B Chain B, Crystal Structure Of The Primase Fragment Of Bacteriophage
T7 Primase- Helicase Protein
Length = 255
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 44 NGRCEAMCIDG-TKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARL 102
NGR A+ G +K C G WIA D ++ + DY+D +++ + + D+ +
Sbjct: 75 NGRYSALTARGISKETCQKAG-----YWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKN 129
Query: 103 LKAYGE 108
K G
Sbjct: 130 FKTTGS 135
>pdb|1Q57|A Chain A, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|B Chain B, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|C Chain C, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|D Chain D, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|E Chain E, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|F Chain F, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|G Chain G, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
Length = 503
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 44 NGRCEAMCIDG-TKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARL 102
NGR A+ G +K C G WIA D ++ + DY+D +++ + + D+ +
Sbjct: 12 NGRYSALTARGISKETCQKAG-----YWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKN 66
Query: 103 LKAYGE 108
K G
Sbjct: 67 FKTTGS 72
>pdb|1ONL|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 H-Protein Of
The Glycine Cleavage System
pdb|1ONL|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 H-Protein Of
The Glycine Cleavage System
pdb|1ONL|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 H-Protein Of
The Glycine Cleavage System
Length = 128
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 64 KMHKKVW-IAAGDIILVGLRDY-QDDKADVILKYMPDEARLLK 104
K H+ W + GD +LVG+ DY QD DV+ +P+ R+++
Sbjct: 11 KTHE--WALPEGDTVLVGITDYAQDALGDVVYVELPEVGRVVE 51
>pdb|3I4O|A Chain A, Crystal Structure Of Translation Initiation Factor 1
From Mycobacterium Tuberculosis
pdb|3I4O|B Chain B, Crystal Structure Of Translation Initiation Factor 1
From Mycobacterium Tuberculosis
Length = 79
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 36 AQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK-VWIAAGDIILVGLRDYQDDKADVILK 94
+V+ L N +G K L HI GKM + + I D ++V L Y + ++ +
Sbjct: 18 GRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYR 77
Query: 95 Y 95
Y
Sbjct: 78 Y 78
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 41 MLGNGRCEAMCIDGTKRLCHIRG 63
+ GN R E CID K L HI G
Sbjct: 26 LYGNDRFEGYCIDLLKELAHILG 48
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 41 MLGNGRCEAMCIDGTKRLCHIRG 63
+ GN R E CID K L HI G
Sbjct: 28 LYGNDRFEGYCIDLLKELAHILG 50
>pdb|1ZPR|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1ZPR|B Chain B, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
Length = 264
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHQLLWFLQGDTNIAYLHE 74
>pdb|3HN2|A Chain A, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Geobacter Metallireducens Gs-15
pdb|3HN2|B Chain B, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Geobacter Metallireducens Gs-15
pdb|3HN2|C Chain C, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Geobacter Metallireducens Gs-15
pdb|3HN2|D Chain D, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Geobacter Metallireducens Gs-15
Length = 312
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 43 GNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 100
GNG + I+G L H++G + I D++LVGL+ + + + + +++ + +E
Sbjct: 41 GNG-LKVFSINGDFTLPHVKGYRAPE-EIGPMDLVLVGLKTFANSRYEELIRPLVEEG 96
>pdb|1AIQ|A Chain A, Crystal Structure Of Thymidylate Synthase R126e Mutant
pdb|1AIQ|B Chain B, Crystal Structure Of Thymidylate Synthase R126e Mutant
pdb|1AJM|A Chain A, Crystal Structure Of Thymidylate Synthase R126e Mutant
Length = 264
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|3BGX|A Chain A, E. Coli Thymidylate Synthase C146s Mutant Complexed With
Dtmp And Mtf
pdb|1TYS|A Chain A, Water-Mediated Substrate(Slash)product Discrimination:
The Product Complex Of Thymidylate Synthase At 1.83
Angstroms
Length = 264
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|1FFL|A Chain A, Crystal Structure Of The Apo-Thymidylate Synthase R166q
Mutant
pdb|1FWM|A Chain A, Crystal Structure Of The Thymidylate Synthase R166q
Mutant
pdb|1FWM|B Chain B, Crystal Structure Of The Thymidylate Synthase R166q
Mutant
Length = 264
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|2TSC|A Chain A, Structure, Multiple Site Binding, And Segmental
Accomodation In Thymidylate Synthase On Binding DUMP
AND An Anti-Folate
pdb|2TSC|B Chain B, Structure, Multiple Site Binding, And Segmental
Accomodation In Thymidylate Synthase On Binding DUMP
AND An Anti-Folate
Length = 264
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|1KZJ|A Chain A, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|B Chain B, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|C Chain C, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|D Chain D, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|E Chain E, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|F Chain F, Crystal Structure Of Ects W80g/dump/cb3717 Complex
Length = 264
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|1F4G|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 876
pdb|1F4G|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 876
Length = 264
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|1F4D|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase C146s,
L143c Covalently Modified At C143 With
N-[tosyl-D-Prolinyl]amino- Ethanethiol
pdb|1F4D|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase C146s,
L143c Covalently Modified At C143 With
N-[tosyl-D-Prolinyl]amino- Ethanethiol
Length = 264
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|1JG0|A Chain A, Crystal Structure Of Escherichia Coli Thymidylate
Synthase Complexed With
2'-Deoxyuridine-5'-Monophosphate And
N,O-Didansyl-L-Tyrosine
pdb|1JG0|B Chain B, Crystal Structure Of Escherichia Coli Thymidylate
Synthase Complexed With
2'-Deoxyuridine-5'-Monophosphate And
N,O-Didansyl-L-Tyrosine
Length = 264
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|1KCE|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1KCE|B Chain B, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1TLS|A Chain A, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|1TLS|B Chain B, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|1F4B|A Chain A, Crystal Structure Of Escherichia Coli Thymidylate
Synthase
pdb|1F4C|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Covalently Modified At C146 With
N-[tosyl-D-Prolinyl]amino-Ethanethiol
pdb|1F4C|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Covalently Modified At C146 With
N-[tosyl-D-Prolinyl]amino-Ethanethiol
pdb|1F4E|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Tosyl-D-Proline
pdb|1F4F|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 722
pdb|1F4F|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 722
pdb|1JTQ|A Chain A, E. Coli Ts Complex With Dump And The
Pyrrolo(2,3-D)pyrimidine-Based Antifolate Ly341770
pdb|1JTQ|B Chain B, E. Coli Ts Complex With Dump And The
Pyrrolo(2,3-D)pyrimidine-Based Antifolate Ly341770
pdb|1JTU|A Chain A, E. Coli Thymidylate Synthase In A Complex With Dump And
Ly338913, A Polyglutamylated
Pyrrolo(2,3-d)pyrimidine-based Antifolate
pdb|1JTU|B Chain B, E. Coli Thymidylate Synthase In A Complex With Dump And
Ly338913, A Polyglutamylated
Pyrrolo(2,3-d)pyrimidine-based Antifolate
pdb|1JUT|A Chain A, E. Coli Thymidylate Synthase Bound To Dump And Ly338529,
A Pyrrolo(2, 3-d)pyrimidine-based Antifolate
pdb|1JUT|B Chain B, E. Coli Thymidylate Synthase Bound To Dump And Ly338529,
A Pyrrolo(2, 3-d)pyrimidine-based Antifolate
pdb|1KZI|A Chain A, Crystal Structure Of EctsDUMPTHF COMPLEX
pdb|1KZI|B Chain B, Crystal Structure Of EctsDUMPTHF COMPLEX
pdb|2A9W|A Chain A, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|B Chain B, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|C Chain C, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|D Chain D, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2FTQ|A Chain A, E. Coli Thymidylate Synthase At 1.8 A Resolution
pdb|1TSN|A Chain A, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|3B9H|A Chain A, E. Coli Thymidylate Synthase Complexed With
5-Nitro-2'-Deoxy Uridine
pdb|3BHL|A Chain A, E.Coli Thymidylate Synthase Complexes With 5-No2dump And
Tetrahydrofolate At 1.4 A Resolution
pdb|3BHL|B Chain B, E.Coli Thymidylate Synthase Complexes With 5-No2dump And
Tetrahydrofolate At 1.4 A Resolution
pdb|3BHR|A Chain A, E. Coli Ts Complexed With 5-No2dump And Tetrahydrofolate
At 1.9 A Resolution (Space Group 152)
pdb|4IW5|A Chain A, Thymidylate Synthase Ternary Complex With Dump And
Cb3717
pdb|4IW5|B Chain B, Thymidylate Synthase Ternary Complex With Dump And
Cb3717
Length = 264
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|1TLC|A Chain A, Thymidylate Synthase Complexed With Dgmp And Folate
Analog 1843u89
pdb|1TLC|B Chain B, Thymidylate Synthase Complexed With Dgmp And Folate
Analog 1843u89
pdb|1TSD|A Chain A, Thymidylate Synthase Complex With 2'-deoxyuridine 5'-
Monophosphate (dump) And Folate Analog 1843u89
pdb|1TSD|B Chain B, Thymidylate Synthase Complex With 2'-deoxyuridine 5'-
Monophosphate (dump) And Folate Analog 1843u89
pdb|1DDU|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2', 5'-Dideoxyuridine (Ddurd)
pdb|1DDU|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2', 5'-Dideoxyuridine (Ddurd)
pdb|1TDU|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2'- Deoxyuridine (durd)
pdb|1TDU|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2'- Deoxyuridine (durd)
pdb|1AN5|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717
pdb|1AN5|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717
pdb|1AXW|A Chain A, E. Coli Thymidylate Synthase In Complex With
Methotrexate (Mtx) And 2'-Deoxyuridine 5'-Monophosphate
(Dump)
pdb|1AXW|B Chain B, E. Coli Thymidylate Synthase In Complex With
Methotrexate (Mtx) And 2'-Deoxyuridine 5'-Monophosphate
(Dump)
pdb|1BDU|A Chain A, E. Coli Thymidylate Synthase Complexed With Durd
pdb|1BID|A Chain A, E. Coli Thymidylate Synthase Complexed With Dump
pdb|1TJS|A Chain A, E. Coli Thymidylate Synthase
pdb|1TRG|A Chain A, E. Coli Thymidylate Synthase In Symmetric Complex With
Cb3717 And 2'- Deoxyuridine 5'-Monophosphate (Dump)
pdb|1SYN|A Chain A, E. Coli Thymidylate Synthase In Complex With Bw1843u89
And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1SYN|B Chain B, E. Coli Thymidylate Synthase In Complex With Bw1843u89
And 2'-Deoxyuridine 5'-Monophosphate (Dump)
Length = 265
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 47 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 75
>pdb|2BBQ|A Chain A, Structural Basis For Recognition Of Polyglutamyl Folates
By Thymidylate Synthase
pdb|2BBQ|B Chain B, Structural Basis For Recognition Of Polyglutamyl Folates
By Thymidylate Synthase
pdb|2KCE|A Chain A, Binding Of The Anticancer Drug Zd1694 To E. Coli
Thymidylate Synthase: Assessing Specificity And
Affinity
pdb|2KCE|B Chain B, Binding Of The Anticancer Drug Zd1694 To E. Coli
Thymidylate Synthase: Assessing Specificity And
Affinity
pdb|3TMS|A Chain A, Plastic Adaptation Toward Mutations In Proteins:
Structural Comparison Of Thymidylate Synthases
pdb|1AOB|A Chain A, E. Coli Thymidylate Synthase Complexed With Ddurd
Length = 264
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|1DNA|A Chain A, D221(169)n Mutant Does Not Promote Opening Of The
Cofactor Imidazolidine Ring
pdb|1DNA|B Chain B, D221(169)n Mutant Does Not Promote Opening Of The
Cofactor Imidazolidine Ring
pdb|1BJG|A Chain A, D221(169)n Mutant Does Not Promote Opening Of The
Cofactor Imidazolidine Ring
Length = 264
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|2FTN|A Chain A, E. Coli Thymidylate Synthase Y94f Mutant
pdb|2FTO|X Chain X, Y94f Mutant Of Thymidylate Synthase Bound To
Thymidine-5'-Phosphate And
10-Propargyl-5,8-Dideazafolid Acid
Length = 264
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|3BFI|A Chain A, E. Coli Thymidylate Synthase Y209m Mutant Complexed With
5-nitro-dump
Length = 264
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|1BQ1|A Chain A, E. Coli Thymidylate Synthase Mutant N177a In Complex
With Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BQ1|B Chain B, E. Coli Thymidylate Synthase Mutant N177a In Complex
With Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BQ2|A Chain A, E. Coli Thymidylate Synthase Mutant N177a
Length = 264
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|1NCE|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli
Thymidylate Synthase D169c With Dump And The Antifolate
Cb3717
pdb|1NCE|B Chain B, Crystal Structure Of A Ternary Complex Of E. Coli
Thymidylate Synthase D169c With Dump And The Antifolate
Cb3717
Length = 264
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|2G8M|A Chain A, Escherichia Coli Thymidylate Synthase Y209w In Complex
With Substrate, Dump, And A Cofactor Analog, Cb3717
pdb|2G8M|B Chain B, Escherichia Coli Thymidylate Synthase Y209w In Complex
With Substrate, Dump, And A Cofactor Analog, Cb3717
pdb|2G8X|A Chain A, Escherichia Coli Y209w Apoprotein
pdb|2G8X|B Chain B, Escherichia Coli Y209w Apoprotein
pdb|4GEV|A Chain A, E. Coli Thymidylate Synthase Y209w Variant In Complex
With Substrate And A Cofactor Analog
pdb|4GEV|B Chain B, E. Coli Thymidylate Synthase Y209w Variant In Complex
With Substrate And A Cofactor Analog
Length = 264
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTKRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|2VF0|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With 5no2dump And Bw1843u89
pdb|2VF0|B Chain B, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With 5no2dump And Bw1843u89
Length = 264
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTQRCHLRSIIHELLWFLQGDTNIAYLHE 74
>pdb|2VET|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With Dump
pdb|3B5B|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
pdb|3B5B|B Chain B, Crystal Structure Of The Thymidylate Synthase K48q
Length = 264
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRD 83
T + CH+R +H+ +W GD + L +
Sbjct: 46 TTQRCHLRSIIHELLWFLQGDTNIAYLHE 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.141 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,735,424
Number of Sequences: 62578
Number of extensions: 134305
Number of successful extensions: 318
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 31
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)