BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032191
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 84 GDSNLIAKWKKPGYERLCCLRCIQPRDHNFGTTCVCRVPKHLREEKHVECVHC 136
G + A W PG R L P D F + VP +L K E +HC
Sbjct: 40 GRIRMAAHWM-PGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHC 91
>pdb|2F8L|A Chain A, Crystal Structure Of A Putative Class I
S-Adenosylmethionine-Dependent Methyltransferase
(Lmo1582) From Listeria Monocytogenes At 2.20 A
Resolution
Length = 344
Score = 28.9 bits (63), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 64 YYKRNEISKELYEFCLDQGYGDSNLI-----AKWKKPGYERLCCLRCIQPRDHNFGTTCV 118
YY +E +K +E C ++G+ ++ + ++ KPG L + P D FGT+
Sbjct: 213 YYPDDENAKT-FELCREEGHSFAHFLFIEQGXRYTKPG----GYLFFLVP-DAXFGTSDF 266
Query: 119 CRVPKHLREEKHVECV 134
+V K +++ H+E +
Sbjct: 267 AKVDKFIKKNGHIEGI 282
>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|B Chain B, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|C Chain C, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|D Chain D, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|E Chain E, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|F Chain F, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|G Chain G, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
Length = 205
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 68 NEISKELYEFCLDQGYGDSNLIAKWKKPGY 97
N IS ++Y +CL + YG + ++A K GY
Sbjct: 93 NYISSDVYTYCLGKAYGIACILASSGKKGY 122
>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme
pdb|4HNK|B Chain B, Crystal Structure Of An Enzyme
pdb|4HNK|C Chain C, Crystal Structure Of An Enzyme
pdb|4HNK|D Chain D, Crystal Structure Of An Enzyme
pdb|4HNK|E Chain E, Crystal Structure Of An Enzyme
pdb|4HNK|F Chain F, Crystal Structure Of An Enzyme
pdb|4HNK|G Chain G, Crystal Structure Of An Enzyme
pdb|4HNK|H Chain H, Crystal Structure Of An Enzyme
pdb|4HNK|I Chain I, Crystal Structure Of An Enzyme
pdb|4HNK|J Chain J, Crystal Structure Of An Enzyme
pdb|4HNK|K Chain K, Crystal Structure Of An Enzyme
pdb|4HNK|L Chain L, Crystal Structure Of An Enzyme
pdb|4HNK|M Chain M, Crystal Structure Of An Enzyme
pdb|4HNK|N Chain N, Crystal Structure Of An Enzyme
Length = 219
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 68 NEISKELYEFCLDQGYGDSNLIAKWKKPGY 97
N IS ++Y +CL + YG + ++A K GY
Sbjct: 107 NYISSDVYTYCLGKAYGIACILASSGKKGY 136
>pdb|1X1Q|A Chain A, Crystal Structure Of Tryptophan Synthase Beta Chain From
Thermus Thermophilus Hb8
pdb|1X1Q|B Chain B, Crystal Structure Of Tryptophan Synthase Beta Chain From
Thermus Thermophilus Hb8
Length = 418
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 16 ELIAPTLREMEAKMREAENDP 36
E + P L E+EA REA+ DP
Sbjct: 40 ETLIPALEELEAAYREAKKDP 60
>pdb|1EV8|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli
Length = 264
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 22 LREMEAKMREAENDPHDGKRKCETLWPIF---KIAHQRSQYIFELYYKRNEISKELYEFC 78
+ ++ + + +NDP D +R + W + K+A F+ Y ++S +LY+ C
Sbjct: 109 IDQITTVLNQLKNDP-DSRRIIVSAWNVGELDKMALAPXHAFFQFYVADGKLSCQLYQRC 167
Query: 79 LDQGYG 84
D G
Sbjct: 168 XDVFLG 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.474
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,053,220
Number of Sequences: 62578
Number of extensions: 206709
Number of successful extensions: 378
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 9
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)