Query 032191
Match_columns 145
No_of_seqs 103 out of 156
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 17:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jmt_B Splicing factor U2AF 65 54.2 3.1 0.00011 24.0 0.3 13 8-20 8-20 (28)
2 2d4p_A Hypothetical protein TT 47.1 6.1 0.00021 29.7 1.0 51 50-101 56-119 (141)
3 3nrw_A Phage integrase/site-sp 47.0 10 0.00035 25.3 2.0 24 72-95 84-107 (117)
4 3o70_A PHD finger protein 13; 44.3 7.9 0.00027 25.4 1.1 26 110-137 15-40 (68)
5 3lys_A Prophage PI2 protein 01 43.8 9.5 0.00033 25.0 1.5 28 72-99 80-107 (112)
6 1xgw_A Epsin 4; ENTH, enthopro 39.0 20 0.00068 27.8 2.8 53 23-83 33-105 (176)
7 1ou8_A Stringent starvation pr 38.9 14 0.00047 27.3 1.8 14 70-83 12-25 (111)
8 1yfn_A Stringent starvation pr 37.8 14 0.00049 27.4 1.8 14 70-83 13-26 (118)
9 3i5p_A Nucleoporin NUP170; hel 37.3 12 0.00042 33.4 1.6 23 66-88 176-198 (525)
10 1ou9_A Stringent starvation pr 34.1 18 0.00061 27.3 1.8 14 70-83 12-25 (129)
11 3o7a_A PHD finger protein 13 v 31.6 13 0.00045 22.7 0.6 22 114-137 4-25 (52)
12 1r48_A Proline/betaine transpo 28.7 45 0.0015 19.4 2.5 20 14-33 2-21 (33)
13 3onk_A Epsin-3, ENT3; helix, p 27.7 40 0.0014 25.4 2.8 52 24-83 11-82 (150)
14 2lv9_A Histone-lysine N-methyl 26.5 17 0.00059 25.1 0.5 22 115-138 29-50 (98)
15 2kj5_A Phage integrase; GFT PS 26.2 38 0.0013 21.6 2.1 24 72-95 80-103 (116)
16 1we9_A PHD finger family prote 25.6 31 0.0011 21.5 1.6 26 111-137 3-29 (64)
17 2oxo_A Integrase; DNA-binding 25.5 26 0.00087 21.2 1.1 23 72-94 75-97 (103)
18 1x4i_A Inhibitor of growth pro 25.5 25 0.00086 23.1 1.1 25 111-138 3-27 (70)
19 2khq_A Integrase; all-alpha, s 25.5 38 0.0013 21.3 2.0 23 72-94 76-98 (110)
20 3epz_A DNA (cytosine-5)-methyl 25.3 34 0.0012 28.7 2.2 35 47-81 153-187 (268)
21 2kkp_A Phage integrase; SAM-li 25.3 37 0.0013 21.5 2.0 23 72-94 83-105 (117)
22 2key_A Putative phage integras 24.6 44 0.0015 21.2 2.2 24 72-95 83-106 (112)
23 2kob_A Uncharacterized protein 24.5 41 0.0014 21.0 2.0 21 72-92 74-94 (108)
24 2wbn_A G2P, terminase large su 24.5 18 0.00062 27.8 0.3 50 49-98 68-128 (212)
25 3kqi_A GRC5, PHD finger protei 23.4 21 0.00071 23.4 0.4 27 110-137 6-32 (75)
26 2kiw_A INT protein; alpha, str 21.4 42 0.0014 21.2 1.6 24 72-95 73-96 (111)
27 2i5u_A DNAD domain protein; st 20.3 33 0.0011 22.7 0.9 29 71-100 41-78 (83)
No 1
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=54.18 E-value=3.1 Score=24.02 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=11.1
Q ss_pred CCCCCCChhchHH
Q 032191 8 RTKYPDGWELIAP 20 (145)
Q Consensus 8 ~k~pP~G~e~Ie~ 20 (145)
.-.||+|||.|-|
T Consensus 8 WDvpP~GyE~vtp 20 (28)
T 1jmt_B 8 WDVPPPGFEHITP 20 (28)
T ss_dssp BTCCCTTCTTSCH
T ss_pred cCCCCCCccccCH
Confidence 3679999999877
No 2
>2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein STR and functional analyses; 1.70A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 2d4o_A
Probab=47.05 E-value=6.1 Score=29.68 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=38.9
Q ss_pred eecccchhhhHHhhhhhhhhhhHHHHH----HHHhcCCC---------CHHHHhhhccccccccc
Q 032191 50 FKIAHQRSQYIFELYYKRNEISKELYE----FCLDQGYG---------DSNLIAKWKKPGYERLC 101 (145)
Q Consensus 50 ~rI~hqrSRYIydlyYk~k~ISreLY~----~~lk~~ya---------D~~LIaKWkK~GYE~LC 101 (145)
+.- =.|.=|||||+|+++-|.+.|.+ |+.++|.. +....+-|.+.||..-=
T Consensus 56 i~g-dg~~~~L~dl~~R~~GIG~~Ll~~a~~~a~~~G~~rv~L~~~~~N~~a~~fye~~Gf~~~~ 119 (141)
T 2d4p_A 56 WQG-EATTVLVTRIEGRSVEALRGLLRAVVKSAYDAGVYEVALHLDPERKELEEALKAEGFALGP 119 (141)
T ss_dssp ECS-SSEEEEEEEEEESSHHHHHHHHHHHHHHHHHTTCSEEEECCCTTCHHHHHHHHHTTCCCCS
T ss_pred EEc-CCeEEEEeHHhhccccHHHHHHHHHHHHHHHCCCCEEEEEecccCHHHHHHHHHCCCEecC
Confidence 355 78888999999999999999876 45556632 24577889999998643
No 3
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=47.03 E-value=10 Score=25.28 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCCCHHHHhhhccc
Q 032191 72 KELYEFCLDQGYGDSNLIAKWKKP 95 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKWkK~ 95 (145)
|.+|+|++++|+++.|..+.-+.+
T Consensus 84 r~f~~~l~~~g~i~~nP~~~v~~p 107 (117)
T 3nrw_A 84 KNWLEYLARIDVVDEDLPEKVHVP 107 (117)
T ss_dssp HHHHHHHHHTTSSCTTSGGGCCCC
T ss_pred HHHHHHHHHcCCcccCHHHHccCC
Confidence 369999999999999988876554
No 4
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=44.35 E-value=7.9 Score=25.38 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=18.7
Q ss_pred CCCCCcceEEecccccccCCeecccccc
Q 032191 110 DHNFGTTCVCRVPKHLREEKHVECVHCG 137 (145)
Q Consensus 110 ~~n~gttCICRVPk~l~~~~~~~Cv~CG 137 (145)
+.+.+..|||+.|.. .+..|+|..|.
T Consensus 15 ~~~~~~~CiC~~~~~--~~~MIqCd~C~ 40 (68)
T 3o70_A 15 YFQGLVTCFCMKPFA--GRPMIECNECH 40 (68)
T ss_dssp TTTTCCCSTTCCCCT--TCCEEECTTTC
T ss_pred CCCCceEeECCCcCC--CCCEEECCCCC
Confidence 344578899998853 23579998875
No 5
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=43.82 E-value=9.5 Score=24.97 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCCCHHHHhhhccccccc
Q 032191 72 KELYEFCLDQGYGDSNLIAKWKKPGYER 99 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKWkK~GYE~ 99 (145)
+.+++|.+++|+++.|-++.=+.+|-|.
T Consensus 80 ~~i~~~Av~~g~i~~NP~~~v~~~~~~~ 107 (112)
T 3lys_A 80 RASIQCLIEEGRLQKDFTTRAVVKGLEH 107 (112)
T ss_dssp HHHHHHHHHTTSCSSCTTSSTTCCCCCC
T ss_pred HHHHHHHHHCCCcccCccccceeccccc
Confidence 5799999999999999999999999773
No 6
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=38.95 E-value=20 Score=27.84 Aligned_cols=53 Identities=25% Similarity=0.415 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhCCCCCCCC------------CCccccceeecccchh--------hhHHhhhhhhhhhhHHHHHHHHhcC
Q 032191 23 REMEAKMREAENDPHDGKR------------KCETLWPIFKIAHQRS--------QYIFELYYKRNEISKELYEFCLDQG 82 (145)
Q Consensus 23 ~e~~~kmreae~e~~~gkr------------k~e~lWpI~rI~hqrS--------RYIydlyYk~k~ISreLY~~~lk~~ 82 (145)
.+.+.+.|||.|...-|.. ..+.++.|+.+-|.|- |-|| |++. |.||||++|
T Consensus 33 s~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vy------KaL~--LLeYLl~nG 104 (176)
T 1xgw_A 33 SEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVY------KSLL--LLAYLIRNG 104 (176)
T ss_dssp CHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHH------HHHH--HHHHHHHHS
T ss_pred CHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHH------HHHH--HHHHHHHhC
Confidence 3567788999988776643 2456777777777761 2233 2333 999999999
Q ss_pred C
Q 032191 83 Y 83 (145)
Q Consensus 83 y 83 (145)
-
T Consensus 105 s 105 (176)
T 1xgw_A 105 S 105 (176)
T ss_dssp C
T ss_pred C
Confidence 4
No 7
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=38.90 E-value=14 Score=27.27 Aligned_cols=14 Identities=14% Similarity=0.683 Sum_probs=12.0
Q ss_pred hhHHHHHHHHhcCC
Q 032191 70 ISKELYEFCLDQGY 83 (145)
Q Consensus 70 ISreLY~~~lk~~y 83 (145)
+=|.+||||+++++
T Consensus 12 LiRA~yeWi~DN~~ 25 (111)
T 1ou8_A 12 LLRAYYDWLVDNSF 25 (111)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC
Confidence 45789999999996
No 8
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=37.81 E-value=14 Score=27.40 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=12.2
Q ss_pred hhHHHHHHHHhcCC
Q 032191 70 ISKELYEFCLDQGY 83 (145)
Q Consensus 70 ISreLY~~~lk~~y 83 (145)
+=|.+||||+++++
T Consensus 13 LiRA~yeWi~DN~~ 26 (118)
T 1yfn_A 13 LLRAFYEWLLDNQL 26 (118)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCC
Confidence 55789999999996
No 9
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=37.25 E-value=12 Score=33.36 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=17.2
Q ss_pred hhhhhhHHHHHHHHhcCCCCHHH
Q 032191 66 KRNEISKELYEFCLDQGYGDSNL 88 (145)
Q Consensus 66 k~k~ISreLY~~~lk~~yaD~~L 88 (145)
+.+.+--.||+|++.+|..|.-|
T Consensus 176 ~DelFH~~LYdWli~~gl~d~LL 198 (525)
T 3i5p_A 176 NDRLFHYHMYDWLVSQNREEKLL 198 (525)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGGG
T ss_pred ChHHHHHHHHHHHHhCCCcchhh
Confidence 44455567999999999887644
No 10
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=34.08 E-value=18 Score=27.34 Aligned_cols=14 Identities=14% Similarity=0.683 Sum_probs=12.0
Q ss_pred hhHHHHHHHHhcCC
Q 032191 70 ISKELYEFCLDQGY 83 (145)
Q Consensus 70 ISreLY~~~lk~~y 83 (145)
+=|.+||||+++++
T Consensus 12 LiRA~yeWi~DN~~ 25 (129)
T 1ou9_A 12 LLRAYYDWLVDNSF 25 (129)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC
Confidence 45789999999996
No 11
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=31.60 E-value=13 Score=22.72 Aligned_cols=22 Identities=32% Similarity=0.689 Sum_probs=16.1
Q ss_pred CcceEEecccccccCCeecccccc
Q 032191 114 GTTCVCRVPKHLREEKHVECVHCG 137 (145)
Q Consensus 114 gttCICRVPk~l~~~~~~~Cv~CG 137 (145)
...|||+.|.. .+..|+|..|.
T Consensus 4 ~~~C~C~~~~~--~~~MI~Cd~C~ 25 (52)
T 3o7a_A 4 LVTCFCMKPFA--GRPMIECNECH 25 (52)
T ss_dssp CBCSTTCCBCT--TCCEEECTTTC
T ss_pred CeEEEeCCcCC--CCCEEEcCCCC
Confidence 45799998853 34679998875
No 12
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=28.68 E-value=45 Score=19.43 Aligned_cols=20 Identities=10% Similarity=0.370 Sum_probs=17.1
Q ss_pred ChhchHHHHHHHHHHHHHhh
Q 032191 14 GWELIAPTLREMEAKMREAE 33 (145)
Q Consensus 14 G~e~Ie~tL~e~~~kmreae 33 (145)
|.+.|+-.+++++.+..+++
T Consensus 2 ~~Dnie~~iedi~~ei~~l~ 21 (33)
T 1r48_A 2 GGDNIEQKIDDIDHEIADLQ 21 (33)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHhhhhHHHHHHHHH
Confidence 77889999999998888875
No 13
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=27.66 E-value=40 Score=25.37 Aligned_cols=52 Identities=27% Similarity=0.441 Sum_probs=33.4
Q ss_pred HHHHHHHHhhCCCCCCCC------------CCccccceeecccch--------hhhHHhhhhhhhhhhHHHHHHHHhcCC
Q 032191 24 EMEAKMREAENDPHDGKR------------KCETLWPIFKIAHQR--------SQYIFELYYKRNEISKELYEFCLDQGY 83 (145)
Q Consensus 24 e~~~kmreae~e~~~gkr------------k~e~lWpI~rI~hqr--------SRYIydlyYk~k~ISreLY~~~lk~~y 83 (145)
+++.+.|+|.|...-|.. ..+.++.|+.+-|.| =|.|| |++. |.||||++|-
T Consensus 11 ~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vy------KaL~--lLeyLl~nGs 82 (150)
T 3onk_A 11 EMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIY------KALQ--LLDYLIKHGS 82 (150)
T ss_dssp HHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHH------HHHH--HHHHHHHHSC
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHH------HHHH--HHHHHHHhCC
Confidence 678889999988776643 234456666655544 12333 3333 9999999983
No 14
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=26.48 E-value=17 Score=25.12 Aligned_cols=22 Identities=23% Similarity=0.721 Sum_probs=16.4
Q ss_pred cceEEecccccccCCeeccccccc
Q 032191 115 TTCVCRVPKHLREEKHVECVHCGC 138 (145)
Q Consensus 115 ttCICRVPk~l~~~~~~~Cv~CGC 138 (145)
+.|||++|. +.+.+|+|..|.-
T Consensus 29 vrCiC~~~~--~~~~mi~Cd~C~~ 50 (98)
T 2lv9_A 29 TRCICGFTH--DDGYMICCDKCSV 50 (98)
T ss_dssp CCCTTSCCS--CSSCEEEBTTTCB
T ss_pred EEeECCCcc--CCCcEEEcCCCCC
Confidence 679999985 2356899988753
No 15
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=26.15 E-value=38 Score=21.64 Aligned_cols=24 Identities=13% Similarity=0.301 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCCCHHHHhhhccc
Q 032191 72 KELYEFCLDQGYGDSNLIAKWKKP 95 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKWkK~ 95 (145)
+.+++|++++|+++.|-+..-+.+
T Consensus 80 ~~~~~~A~~~~~i~~NP~~~i~~p 103 (116)
T 2kj5_A 80 KRMFNYAIKRHIIEYNPAAAFDPG 103 (116)
T ss_dssp HHHHHHHHHTTSCSSCGGGGSCCC
T ss_pred HHHHHHHHHcCccccCchhhCCCC
Confidence 478999999999998877766554
No 16
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.62 E-value=31 Score=21.49 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=17.7
Q ss_pred CCCCcce-EEecccccccCCeecccccc
Q 032191 111 HNFGTTC-VCRVPKHLREEKHVECVHCG 137 (145)
Q Consensus 111 ~n~gttC-ICRVPk~l~~~~~~~Cv~CG 137 (145)
.+-++.| ||+.|-. ..+..|+|..|.
T Consensus 3 ~~e~~~C~~C~~~~~-~~~~mI~Cd~C~ 29 (64)
T 1we9_A 3 SGSSGQCGACGESYA-ADEFWICCDLCE 29 (64)
T ss_dssp CSSCCCCSSSCCCCC-SSSCEEECSSSC
T ss_pred CCCCCCCCCCCCccC-CCCCEEEccCCC
Confidence 3457889 9998852 124578998764
No 17
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=25.52 E-value=26 Score=21.22 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCCCHHHHhhhcc
Q 032191 72 KELYEFCLDQGYGDSNLIAKWKK 94 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKWkK 94 (145)
+.+|+|++++|+++.|-...-+.
T Consensus 75 ~~~~~~a~~~~~i~~nP~~~v~~ 97 (103)
T 2oxo_A 75 SDAFREAIAEGHITTNHVAATRA 97 (103)
T ss_dssp HHHHHHHHHTTSCSSCTTC----
T ss_pred HHHHHHHHHcCCCCCChHhhcCC
Confidence 57899999999998877655443
No 18
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.50 E-value=25 Score=23.07 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=18.8
Q ss_pred CCCCcceEEecccccccCCeeccccccc
Q 032191 111 HNFGTTCVCRVPKHLREEKHVECVHCGC 138 (145)
Q Consensus 111 ~n~gttCICRVPk~l~~~~~~~Cv~CGC 138 (145)
.+-..-|||+-|. .+.+|+|.+|.|
T Consensus 3 ~~~~~yC~C~~~~---~g~MI~CD~cdC 27 (70)
T 1x4i_A 3 SGSSGYCICNQVS---YGEMVGCDNQDC 27 (70)
T ss_dssp CSCCCCSTTSCCC---CSSEECCSCTTC
T ss_pred CCCCeEEEcCCCC---CCCEeEeCCCCC
Confidence 4456789998763 346899999987
No 19
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=25.47 E-value=38 Score=21.32 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCCCHHHHhhhcc
Q 032191 72 KELYEFCLDQGYGDSNLIAKWKK 94 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKWkK 94 (145)
+.+|+|++++|+++.|-+..-+.
T Consensus 76 ~~~~~~a~~~~~i~~NP~~~v~~ 98 (110)
T 2khq_A 76 RNAFDDAIHEGYVIKNPTYKAEL 98 (110)
T ss_dssp HHHHHHHHHTTCCCCCGGGGCCC
T ss_pred HHHHHHHHHCCCcccCccccccc
Confidence 47899999999999887765443
No 20
>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal BIND binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens}
Probab=25.32 E-value=34 Score=28.66 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=26.0
Q ss_pred cceeecccchhhhHHhhhhhhhhhhHHHHHHHHhc
Q 032191 47 WPIFKIAHQRSQYIFELYYKRNEISKELYEFCLDQ 81 (145)
Q Consensus 47 WpI~rI~hqrSRYIydlyYk~k~ISreLY~~~lk~ 81 (145)
|=|..=....=+=+|+.||.+--+|+++|++|.++
T Consensus 153 dY~L~kPS~~Yk~~~~~f~eK~~~s~~Vie~L~~~ 187 (268)
T 3epz_A 153 EYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSN 187 (268)
T ss_dssp EEEECCBCTTTHHHHTTCCHHHHHHHHHHHHHHHC
T ss_pred EEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333333333448999999999999999999997
No 21
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=25.28 E-value=37 Score=21.54 Aligned_cols=23 Identities=17% Similarity=-0.005 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCCCHHHHhhhcc
Q 032191 72 KELYEFCLDQGYGDSNLIAKWKK 94 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKWkK 94 (145)
+.+|+|++++|+++.|-...-+.
T Consensus 83 ~~~~~~A~~~~~i~~nP~~~i~~ 105 (117)
T 2kkp_A 83 HEAMSQARESGLLLQNPTEAAKP 105 (117)
T ss_dssp HHHHHHHHTTTSCSSCGGGGSCC
T ss_pred HHHHHHHHHCCCcccCccccCCC
Confidence 36889999999888877665443
No 22
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=24.60 E-value=44 Score=21.24 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCCCHHHHhhhccc
Q 032191 72 KELYEFCLDQGYGDSNLIAKWKKP 95 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKWkK~ 95 (145)
|.+|+|++++|+++.|-...-+.|
T Consensus 83 r~~~~~a~~~~~i~~nP~~~v~~p 106 (112)
T 2key_A 83 KIYVSAAIKKGYMENDPFKDFGLE 106 (112)
T ss_dssp HHHHHHHHHTTSCCSCHHHHHTCC
T ss_pred HHHHHHHHHCCCcccCCcccCCCc
Confidence 368999999999998877665544
No 23
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=24.53 E-value=41 Score=21.02 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCCCHHHHhhh
Q 032191 72 KELYEFCLDQGYGDSNLIAKW 92 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKW 92 (145)
+.+|+|++++|+++.|-+..-
T Consensus 74 ~~~~~~A~~~~~i~~NP~~~v 94 (108)
T 2kob_A 74 SQIFRLAIENRAIDFNPADYV 94 (108)
T ss_dssp HHHHHHHHHTTSSSSCGGGTC
T ss_pred HHHHHHHHHcCCcccCccccC
Confidence 468999999999888766543
No 24
>2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB: 2wc9_A
Probab=24.49 E-value=18 Score=27.77 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=39.2
Q ss_pred eeeccc-chhhhHHhhhhhhhhhhHHHHHHHHhcCC---------CCHHHHhhhccc-ccc
Q 032191 49 IFKIAH-QRSQYIFELYYKRNEISKELYEFCLDQGY---------GDSNLIAKWKKP-GYE 98 (145)
Q Consensus 49 I~rI~h-qrSRYIydlyYk~k~ISreLY~~~lk~~y---------aD~~LIaKWkK~-GYE 98 (145)
.+.+.. .+.=||++-||.++.-..++.+++.+.+| |.+.+|+-.++. |+.
T Consensus 68 ~~~~d~~~~~lyi~~E~y~~~~~~~~~a~~i~~~~~~~~~i~~DsA~~~~I~~l~~~~G~~ 128 (212)
T 2wbn_A 68 RWHYDKRKNRIYAIDELVDHKVSLKRTADFVRKNKYESARIIADSSEPRSIDALKLEHGIN 128 (212)
T ss_dssp EEEEETTTTEEEEEEEEEESSCCHHHHHHHHHHTTCTTSCEEECTTCHHHHHHHHHTTCCT
T ss_pred EEEEECCCCEEEEEEehhhcCCCHHHHHHHHHHcCCCCceeeeCCcCHHHHHHHHHhCCcc
Confidence 344543 46789999999988888899999887766 577899999986 873
No 25
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=23.43 E-value=21 Score=23.35 Aligned_cols=27 Identities=30% Similarity=0.626 Sum_probs=18.9
Q ss_pred CCCCCcceEEecccccccCCeecccccc
Q 032191 110 DHNFGTTCVCRVPKHLREEKHVECVHCG 137 (145)
Q Consensus 110 ~~n~gttCICRVPk~l~~~~~~~Cv~CG 137 (145)
..+.+..|||+.|-. ..+..|+|..|.
T Consensus 6 ~~~~~~yCiC~~~~~-~~~~MI~Cd~C~ 32 (75)
T 3kqi_A 6 MATVPVYCVCRLPYD-VTRFMIECDACK 32 (75)
T ss_dssp TCCCCEETTTTEECC-TTSCEEECTTTC
T ss_pred CCCCeeEEECCCcCC-CCCCEEEcCCCC
Confidence 345678899998852 134579998875
No 26
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=21.41 E-value=42 Score=21.23 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCCCHHHHhhhccc
Q 032191 72 KELYEFCLDQGYGDSNLIAKWKKP 95 (145)
Q Consensus 72 reLY~~~lk~~yaD~~LIaKWkK~ 95 (145)
+.+|+|++++|+++.|-+..-+.+
T Consensus 73 r~~~~~A~~~~~i~~nP~~~i~~p 96 (111)
T 2kiw_A 73 NMIFKYAYDTRLIKAMPSEGIKRP 96 (111)
T ss_dssp HHHHHHHHHTTSCSCCTTTTCCCC
T ss_pred HHHHHHHHHhCChhhCccccCCCC
Confidence 468999999999988876655444
No 27
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=20.33 E-value=33 Score=22.71 Aligned_cols=29 Identities=24% Similarity=0.644 Sum_probs=18.7
Q ss_pred hHHH----HHHHHhcC-----CCCHHHHhhhcccccccc
Q 032191 71 SKEL----YEFCLDQG-----YGDSNLIAKWKKPGYERL 100 (145)
Q Consensus 71 SreL----Y~~~lk~~-----yaD~~LIaKWkK~GYE~L 100 (145)
|.|| +++++.++ |+|+=|.. |+++|...+
T Consensus 41 ~~elI~~A~~~av~~~~~~~~Yi~~IL~~-W~~~gi~T~ 78 (83)
T 2i5u_A 41 AEQLIVKAIEIAIDANARNYNYINAILKD-WEQRGFKSV 78 (83)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHH-HHHHTCCC-
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHcCCCCH
Confidence 5555 67777666 56655544 999997653
Done!