Citrus Sinensis ID: 032195

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEEDDGADNDYIEFEDEDIDKI
cccccccccccccccccccccccEEcccccccEEEEEEEEEccccEEEEEEccccEEEEEEEccccEEEEEEcccEEEEEccccccccEEEEEEccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccEEEEcccccccEEEEEEHHcccccEEEEEEcccEEEEEEccccEEEEEEEcccEEEEEccccccccccEEEEEcHHHHHHHHHcccccccEEEccccccccccccccccccccccccccHccc
mpknkgkggknrkrgkneaddeKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGlrdyqddkADVILKYMPDEARLLKAYgelpestrlnegiaggldeeddgadndyiefededidki
mpknkgkggknrkrgkneaddekrelvfkedgqEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAygelpestrLNEGIaggldeeddgadndyiefededidki
MPknkgkggknrkrgknEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNegiaggldeeddgadNDYIEFEDEDIDKI
*******************************GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGE*************************************
***************************FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEG*************NDYIEFEDEDIDK*
**********************KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEEDDGADNDYIEFEDEDIDKI
********************DEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA****************F**E*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEEDDGADNDYIEFEDEDIDKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query145 2.2.26 [Sep-21-2011]
P56331145 Eukaryotic translation in N/A no 0.993 0.993 0.945 3e-71
P47815144 Eukaryotic translation in N/A no 0.993 1.0 0.862 6e-66
Q5RA42144 Eukaryotic translation in yes no 0.903 0.909 0.729 1e-50
Q8BMJ3144 Eukaryotic translation in yes no 0.903 0.909 0.729 1e-50
P47813144 Eukaryotic translation in yes no 0.903 0.909 0.729 1e-50
Q6GVM3144 Eukaryotic translation in yes no 0.882 0.888 0.75 3e-50
O14602144 Eukaryotic translation in yes no 0.903 0.909 0.722 3e-50
Q6VV72144 Eukaryotic translation in yes no 0.903 0.909 0.715 3e-50
Q60872144 Eukaryotic translation in yes no 0.903 0.909 0.715 3e-50
P47814144 Eukaryotic translation in yes no 0.903 0.909 0.708 2e-48
>sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2 Back     alignment and function desciption
 Score =  266 bits (680), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 138/146 (94%), Positives = 141/146 (96%), Gaps = 2/146 (1%)

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGI- 119
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP++TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 120 AGGLDEEDDGADNDYIEFEDEDIDKI 145
           AGGLDEE D A NDYIEFEDEDIDKI
Sbjct: 121 AGGLDEEMDTA-NDYIEFEDEDIDKI 145
Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
Onobrychis viciifolia (taxid: 3882)
>sp|P47815|IF1A_WHEAT Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2 Back     alignment and function description
>sp|Q5RA42|IF1AX_PONAB Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3 Back     alignment and function description
>sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ax PE=2 SV=3 Back     alignment and function description
>sp|P47813|IF1AX_HUMAN Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2 Back     alignment and function description
>sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3 Back     alignment and function description
>sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4 Back     alignment and function description
>sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor 1A OS=Rattus norvegicus GN=Eif1a PE=2 SV=3 Back     alignment and function description
>sp|Q60872|IF1A_MOUSE Eukaryotic translation initiation factor 1A OS=Mus musculus GN=Eif1a PE=2 SV=3 Back     alignment and function description
>sp|P47814|IF1A_RABIT Eukaryotic translation initiation factor 1A OS=Oryctolagus cuniculus GN=EIF1A PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query145
225454422145 PREDICTED: eukaryotic translation initia 1.0 1.0 0.972 3e-74
449458572145 PREDICTED: eukaryotic translation initia 1.0 1.0 0.965 5e-74
356520336145 PREDICTED: eukaryotic translation initia 1.0 1.0 0.965 8e-74
388503528145 unknown [Lotus japonicus] 1.0 1.0 0.958 1e-73
356506032145 PREDICTED: eukaryotic translation initia 1.0 1.0 0.951 3e-73
356560650145 PREDICTED: eukaryotic translation initia 1.0 1.0 0.951 4e-73
116779866145 unknown [Picea sitchensis] gi|116780890| 1.0 1.0 0.931 1e-71
81076307144 putative translation initiation factor e 0.993 1.0 0.944 4e-71
426207786145 eukaryotic translation initiation factor 1.0 1.0 0.931 6e-70
255576103145 eif-1a, putative [Ricinus communis] gi|2 1.0 1.0 0.979 7e-70
>gi|225454422|ref|XP_002279938.1| PREDICTED: eukaryotic translation initiation factor 1A-like [Vitis vinifera] gi|225459517|ref|XP_002285844.1| PREDICTED: eukaryotic translation initiation factor 1A [Vitis vinifera] gi|147807310|emb|CAN73005.1| hypothetical protein VITISV_021007 [Vitis vinifera] gi|147821636|emb|CAN70425.1| hypothetical protein VITISV_033730 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  282 bits (721), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 141/145 (97%), Positives = 144/145 (99%)

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGLDEEDDGADNDYIEFEDEDIDKI 145
           GGLDEED+GA +DYIEFEDEDIDKI
Sbjct: 121 GGLDEEDEGAGDDYIEFEDEDIDKI 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449458572|ref|XP_004147021.1| PREDICTED: eukaryotic translation initiation factor 1A-like [Cucumis sativus] gi|449529628|ref|XP_004171800.1| PREDICTED: eukaryotic translation initiation factor 1A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356520336|ref|XP_003528819.1| PREDICTED: eukaryotic translation initiation factor 1A-like [Glycine max] Back     alignment and taxonomy information
>gi|388503528|gb|AFK39830.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356506032|ref|XP_003521792.1| PREDICTED: eukaryotic translation initiation factor 1A-like [Glycine max] gi|356573185|ref|XP_003554744.1| PREDICTED: eukaryotic translation initiation factor 1A-like [Glycine max] Back     alignment and taxonomy information
>gi|356560650|ref|XP_003548603.1| PREDICTED: eukaryotic translation initiation factor 1A-like [Glycine max] Back     alignment and taxonomy information
>gi|116779866|gb|ABK21455.1| unknown [Picea sitchensis] gi|116780890|gb|ABK21865.1| unknown [Picea sitchensis] gi|116785276|gb|ABK23660.1| unknown [Picea sitchensis] gi|116789213|gb|ABK25161.1| unknown [Picea sitchensis] gi|148908808|gb|ABR17510.1| unknown [Picea sitchensis] gi|148910636|gb|ABR18388.1| unknown [Picea sitchensis] gi|224284556|gb|ACN40011.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|81076307|gb|ABB55392.1| putative translation initiation factor eIF-1A-like [Solanum tuberosum] Back     alignment and taxonomy information
>gi|426207786|gb|AFY13532.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207788|gb|AFY13533.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207790|gb|AFY13534.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207792|gb|AFY13535.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207794|gb|AFY13536.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207796|gb|AFY13537.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207798|gb|AFY13538.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207800|gb|AFY13539.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207802|gb|AFY13540.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207804|gb|AFY13541.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207806|gb|AFY13542.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207808|gb|AFY13543.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207810|gb|AFY13544.1| eukaryotic translation initiation factor 1A [Aeschynomene denticulata] gi|443578570|gb|AGC95054.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|443578572|gb|AGC95055.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|443578574|gb|AGC95056.1| eukaryotic translation initiation factor 1A [Aeschynomene ciliata] Back     alignment and taxonomy information
>gi|255576103|ref|XP_002528946.1| eif-1a, putative [Ricinus communis] gi|223531592|gb|EEF33420.1| eif-1a, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query145
TAIR|locus:2058389145 AT2G04520 [Arabidopsis thalian 0.882 0.882 0.828 4.3e-54
UNIPROTKB|F1SQN5144 EIF1AX "Uncharacterized protei 0.875 0.881 0.664 2.6e-40
UNIPROTKB|Q32LC3144 EIF1AX "Uncharacterized protei 0.875 0.881 0.671 3.3e-40
UNIPROTKB|J9NYQ8144 EIF1AX "Uncharacterized protei 0.875 0.881 0.671 3.3e-40
UNIPROTKB|P47813144 EIF1AX "Eukaryotic translation 0.875 0.881 0.671 3.3e-40
UNIPROTKB|I3LAQ2144 EIF1AX "Uncharacterized protei 0.875 0.881 0.671 3.3e-40
MGI|MGI:1913485144 Eif1ax "eukaryotic translation 0.875 0.881 0.671 3.3e-40
RGD|1560198144 Eif1ax "eukaryotic translation 0.875 0.881 0.671 3.3e-40
ZFIN|ZDB-GENE-030131-1319150 eif1axb "eukaryotic translatio 0.875 0.846 0.656 5.3e-40
UNIPROTKB|O14602144 EIF1AY "Eukaryotic translation 0.875 0.881 0.664 6.8e-40
TAIR|locus:2058389 AT2G04520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 106/128 (82%), Positives = 112/128 (87%)

Query:    18 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDII 77
             EADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDI+
Sbjct:    18 EADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIV 77

Query:    78 LVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNXXXXXXXXXXXXXXXNDYIEF 137
             LVGLRDYQDDKADVILKYM DEARLLKAYGELPE+TRLN               +DY+EF
Sbjct:    78 LVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLEDDDDNNDDDYVEF 137

Query:   138 EDEDIDKI 145
             EDEDID+I
Sbjct:   138 EDEDIDRI 145
GO:0003723 "RNA binding" evidence=IEA
GO:0003743 "translation initiation factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006413 "translational initiation" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|F1SQN5 EIF1AX "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q32LC3 EIF1AX "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYQ8 EIF1AX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P47813 EIF1AX "Eukaryotic translation initiation factor 1A, X-chromosomal" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LAQ2 EIF1AX "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1913485 Eif1ax "eukaryotic translation initiation factor 1A, X-linked" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1560198 Eif1ax "eukaryotic translation initiation factor 1A, X-linked" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1319 eif1axb "eukaryotic translation initiation factor 1A, X-linked, b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O14602 EIF1AY "Eukaryotic translation initiation factor 1A, Y-chromosomal" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6GVM3IF1AY_PANTRNo assigned EC number0.750.88270.8888yesno
Q8BMJ3IF1AX_MOUSENo assigned EC number0.72990.90340.9097yesno
P47813IF1AX_HUMANNo assigned EC number0.72990.90340.9097yesno
P47814IF1A_RABITNo assigned EC number0.70800.90340.9097yesno
P47815IF1A_WHEATNo assigned EC number0.86200.99311.0N/Ano
Q5RA42IF1AX_PONABNo assigned EC number0.72990.90340.9097yesno
P55877IF1A_SCHPONo assigned EC number0.67180.88270.9275yesno
P56331IF1A_ONOVINo assigned EC number0.94520.99310.9931N/Ano
Q54YJ6IF1A_DICDINo assigned EC number0.66430.94480.9716yesno
P38912IF1A_YEASTNo assigned EC number0.59820.77240.7320yesno
Q60872IF1A_MOUSENo assigned EC number0.71530.90340.9097yesno
O14602IF1AY_HUMANNo assigned EC number0.72260.90340.9097yesno
Q6VV72IF1A_RATNo assigned EC number0.71530.90340.9097yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
PLN00208145 PLN00208, PLN00208, translation initiation factor 7e-87
PTZ00329155 PTZ00329, PTZ00329, eukaryotic translation initiat 1e-68
cd0579377 cd05793, S1_IF1A, S1_IF1A: Translation initiation 5e-42
smart0065283 smart00652, eIF1a, eukaryotic translation initiati 2e-40
TIGR0052399 TIGR00523, eIF-1A, eukaryotic/archaeal initiation 4e-31
cd0445678 cd04456, S1_IF1A_like, S1_IF1A_like: Translation i 6e-30
pfam0117665 pfam01176, eIF-1a, Translation initiation factor 1 4e-27
PRK04012100 PRK04012, PRK04012, translation initiation factor 9e-24
COG036175 COG0361, InfA, Translation initiation factor 1 (IF 4e-21
>gnl|CDD|177798 PLN00208, PLN00208, translation initiation factor (eIF); Provisional Back     alignment and domain information 
 Score =  249 bits (638), Expect = 7e-87
 Identities = 136/145 (93%), Positives = 141/145 (97%)

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEA+CIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEALCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKM KKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMRKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGLDEEDDGADNDYIEFEDEDIDKI 145
           G LDEE+DG  +DYIEFEDEDIDKI
Sbjct: 121 GDLDEEEDGEGDDYIEFEDEDIDKI 145

Length = 145
>gnl|CDD|185558 PTZ00329, PTZ00329, eukaryotic translation initiation factor 1A; Provisional Back     alignment and domain information
>gnl|CDD|240219 cd05793, S1_IF1A, S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain Back     alignment and domain information
>gnl|CDD|128900 smart00652, eIF1a, eukaryotic translation initiation factor 1A Back     alignment and domain information
>gnl|CDD|129614 TIGR00523, eIF-1A, eukaryotic/archaeal initiation factor 1A Back     alignment and domain information
>gnl|CDD|239903 cd04456, S1_IF1A_like, S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain Back     alignment and domain information
>gnl|CDD|216345 pfam01176, eIF-1a, Translation initiation factor 1A / IF-1 Back     alignment and domain information
>gnl|CDD|179708 PRK04012, PRK04012, translation initiation factor IF-1A; Provisional Back     alignment and domain information
>gnl|CDD|223438 COG0361, InfA, Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 145
PLN00208145 translation initiation factor (eIF); Provisional 100.0
PTZ00329155 eukaryotic translation initiation factor 1A; Provi 100.0
KOG3403145 consensus Translation initiation factor 1A (eIF-1A 100.0
TIGR0052399 eIF-1A eukaryotic/archaeal initiation factor 1A. R 100.0
PRK04012100 translation initiation factor IF-1A; Provisional 100.0
smart0065283 eIF1a eukaryotic translation initiation factor 1A. 100.0
cd0445678 S1_IF1A_like S1_IF1A_like: Translation initiation 100.0
cd0579278 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translat 100.0
cd0579377 S1_IF1A S1_IF1A: Translation initiation factor IF1 100.0
COG036175 InfA Translation initiation factor 1 (IF-1) [Trans 99.95
PF0117665 eIF-1a: Translation initiation factor 1A / IF-1; I 99.94
KOG2925167 consensus Predicted translation initiation factor 99.93
TIGR0000868 infA translation initiation factor IF-1. This fami 99.92
PRK1244287 translation initiation factor IF-1; Reviewed 99.9
CHL0001078 infA translation initiation factor 1 99.77
PRK0027672 infA translation initiation factor IF-1; Validated 99.75
cd0445164 S1_IF1 S1_IF1: Translation Initiation Factor IF1, 99.52
cd0446668 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family ( 98.29
PRK00098 298 GTPase RsgA; Reviewed 97.12
PRK12289 352 GTPase RsgA; Reviewed 97.07
PRK12288 347 GTPase RsgA; Reviewed 96.72
cd01854 287 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil 96.58
PRK01889 356 GTPase RsgA; Reviewed 95.33
cd0016465 S1_like S1_like: Ribosomal protein S1-like RNA-bin 94.58
cd0568568 S1_Tex S1_Tex: The C-terminal S1 domain of a trans 90.74
TIGR0063869 Mop molybdenum-pterin binding domain. This model d 89.86
PF0345964 TOBE: TOBE domain; InterPro: IPR005116 The TOBE do 89.17
cd0578986 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. 88.4
PHA0294588 interferon resistance protein; Provisional 87.69
COG1162 301 Predicted GTPases [General function prediction onl 85.49
cd0445482 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA- 85.17
PF0273642 Myosin_N: Myosin N-terminal SH3-like domain; Inter 84.21
COG1093 269 SUI2 Translation initiation factor 2, alpha subuni 80.25
>PLN00208 translation initiation factor (eIF); Provisional Back     alignment and domain information 
Probab=100.00  E-value=3e-54  Score=332.20  Aligned_cols=145  Identities=94%  Similarity=1.473  Sum_probs=135.6

Q ss_pred             CCCCCCCCCcccccCCCcccccceeeecCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEE
Q 032195            1 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVG   80 (145)
Q Consensus         1 m~~~~~~g~kn~r~~k~~~~~~~~el~~p~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~   80 (145)
                      |||||||||||+||+|++++...++|++|+++|+||+|+++|||++|+|+|+||+++|||||||||++|||++||+|+|+
T Consensus         1 m~k~k~kggk~~~~~k~~~~~~~~el~~p~egq~~g~V~~~lGn~~~~V~c~dG~~rLa~IpGKmRKrIWI~~GD~VlVe   80 (145)
T PLN00208          1 MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEALCIDGTKRLCHIRGKMRKKVWIAAGDIILVG   80 (145)
T ss_pred             CCCCCCCCccccccccccCccceeecccCCCCcEEEEEEEEcCCCEEEEEECCCCEEEEEEeccceeeEEecCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCceEEEEEcChhHHHHHHHcCCCCccccccccccCCCCCCCCCCCCCccccccccccCC
Q 032195           81 LRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEEDDGADNDYIEFEDEDIDKI  145 (145)
Q Consensus        81 ~~~~~~~Kg~Ii~ry~~devk~L~k~g~wP~~f~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  145 (145)
                      +|+|+++||+|+|||+++|++||+++|+||+.|.++++++.+.-...++++|++|||++.|++.+
T Consensus        81 l~~~d~~KgdIv~ry~~dqvr~Lkk~G~~P~~f~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  145 (145)
T PLN00208         81 LRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGDLDEEEDGEGDDYIEFEDEDIDKI  145 (145)
T ss_pred             ccCCCCCEEEEEEEcCHHHHHHHHHcCCCCcceeeccccccccccccCcccCcceeecccccccC
Confidence            99999999999999999999999999999999999999984422111245888999999999875

>PTZ00329 eukaryotic translation initiation factor 1A; Provisional Back     alignment and domain information
>KOG3403 consensus Translation initiation factor 1A (eIF-1A) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A Back     alignment and domain information
>PRK04012 translation initiation factor IF-1A; Provisional Back     alignment and domain information
>smart00652 eIF1a eukaryotic translation initiation factor 1A Back     alignment and domain information
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain Back     alignment and domain information
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain Back     alignment and domain information
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain Back     alignment and domain information
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins Back     alignment and domain information
>KOG2925 consensus Predicted translation initiation factor related to eIF-1A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00008 infA translation initiation factor IF-1 Back     alignment and domain information
>PRK12442 translation initiation factor IF-1; Reviewed Back     alignment and domain information
>CHL00010 infA translation initiation factor 1 Back     alignment and domain information
>PRK00276 infA translation initiation factor IF-1; Validated Back     alignment and domain information
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain Back     alignment and domain information
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain Back     alignment and domain information
>PRK00098 GTPase RsgA; Reviewed Back     alignment and domain information
>PRK12289 GTPase RsgA; Reviewed Back     alignment and domain information
>PRK12288 GTPase RsgA; Reviewed Back     alignment and domain information
>cd01854 YjeQ_engC YjeQ/EngC Back     alignment and domain information
>PRK01889 GTPase RsgA; Reviewed Back     alignment and domain information
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain Back     alignment and domain information
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa Back     alignment and domain information
>TIGR00638 Mop molybdenum-pterin binding domain Back     alignment and domain information
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner Back     alignment and domain information
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain Back     alignment and domain information
>PHA02945 interferon resistance protein; Provisional Back     alignment and domain information
>COG1162 Predicted GTPases [General function prediction only] Back     alignment and domain information
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain Back     alignment and domain information
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold Back     alignment and domain information
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
1d7q_A143 Human Translation Initiation Factor Eif1a Length = 2e-41
2oqk_A117 Crystal Structure Of Putative Cryptosporidium Parvu 3e-36
1jt8_A102 Archaeal Initiation Factor-1a, Aif-1a Length = 102 2e-08
2dgy_A111 Solution Structure Of The Eukaryotic Initiation Fac 2e-04
>pdb|1D7Q|A Chain A, Human Translation Initiation Factor Eif1a Length = 143 Back     alignment and structure 
Iteration: 1

 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 85/99 (85%)
Query: 18  EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDII 77
           E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DII
Sbjct: 17  ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDII 76
Query: 78  LVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 116
           LVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct: 77  LVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 115
>pdb|2OQK|A Chain A, Crystal Structure Of Putative Cryptosporidium Parvum Translation Initiation Factor Eif-1a Length = 117 Back     alignment and structure
>pdb|1JT8|A Chain A, Archaeal Initiation Factor-1a, Aif-1a Length = 102 Back     alignment and structure
>pdb|2DGY|A Chain A, Solution Structure Of The Eukaryotic Initiation Factor 1a In Mgc11102 Protein Length = 111 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
1d7q_A143 Translation initiation factor 1A; OB-fold, beta-ba 8e-49
2oqk_A117 Putative translation initiation factor EIF-1A; mal 3e-46
1jt8_A102 EIF-1A, probable translation initiation factor 1A; 8e-36
2dgy_A111 MGC11102 protein; EIF-1A, structural genomics, NPP 8e-34
3i4o_A79 Translation initiation factor IF-1; cytoplasm, pro 5e-06
1ah9_A71 IF1, initiation factor 1; ribosome binding, protei 5e-06
1hr0_W71 Translation initiation factor; ribosomal subunit, 1e-05
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 143 Back     alignment and structure
 Score =  152 bits (386), Expect = 8e-49
 Identities = 105/144 (72%), Positives = 115/144 (79%), Gaps = 1/144 (0%)

Query: 2   PKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHI 61
           PKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHI
Sbjct: 1   PKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHI 60

Query: 62  RGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAG 121
           RGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    
Sbjct: 61  RGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTF 120

Query: 122 GLDEEDDGADNDYIEFEDEDIDKI 145
           G   +DD    D I  +DEDID I
Sbjct: 121 G-PGDDDEIQFDDIGDDDEDIDDI 143
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II} Length = 117 Back     alignment and structure
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5 Length = 102 Back     alignment and structure
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} Length = 79 Back     alignment and structure
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5 Length = 71 Back     alignment and structure
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W Length = 71 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query145
1d7q_A143 Translation initiation factor 1A; OB-fold, beta-ba 100.0
2oqk_A117 Putative translation initiation factor EIF-1A; mal 100.0
2dgy_A111 MGC11102 protein; EIF-1A, structural genomics, NPP 100.0
1jt8_A102 EIF-1A, probable translation initiation factor 1A; 100.0
3i4o_A79 Translation initiation factor IF-1; cytoplasm, pro 99.89
1ah9_A71 IF1, initiation factor 1; ribosome binding, protei 99.84
1hr0_W71 Translation initiation factor; ribosomal subunit, 99.82
2rcn_A 358 Probable GTPase ENGC; YJEQ, circularly permuted, G 97.32
1t9h_A 307 YLOQ, probable GTPase ENGC; N-terminal beta-barrel 97.13
2yv5_A 302 YJEQ protein; hydrolase, GTPase, permutation, stru 96.24
2k52_A80 Uncharacterized protein MJ1198; metal-binding, zin 96.02
2wfw_A153 ARC; ATP-binding protein, proteasomal atpases, PAN 95.14
2khi_A115 30S ribosomal protein S1; acetylation, phosphoprot 94.22
3h43_A85 Proteasome-activating nucleotidase; regulatory par 92.37
2wg5_A109 General control protein GCN4, proteasome-activatin 91.76
3m9b_A251 Proteasome-associated ATPase; coil COIL with 5 bet 88.28
2k4k_A130 GSP13, general stress protein 13; cytoplasm, stres 86.89
1kl9_A182 Eukaryotic translation initiation factor 2 subuni; 86.35
1ssf_A156 Transformation related protein 53 binding protein 85.92
1luz_A88 Protein K3, protein K2; stranded anti-parallel bet 85.27
2a19_A175 EIF-2- alpha, eukaryotic translation initiation fa 84.63
2g3r_A123 Tumor suppressor P53-binding protein 1; tandem tud 83.18
2khj_A109 30S ribosomal protein S1; OB fold, acetylation, ph 82.49
1gut_A68 Mopii, molybdate binding protein II; transport pro 80.4
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5 Back     alignment and structure
Probab=100.00  E-value=8.8e-53  Score=322.58  Aligned_cols=138  Identities=76%  Similarity=1.210  Sum_probs=128.9

Q ss_pred             CCCCCCCCcccccCCCcccccceeeecCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEe
Q 032195            2 PKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL   81 (145)
Q Consensus         2 ~~~~~~g~kn~r~~k~~~~~~~~el~~p~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~   81 (145)
                      ||||||||||+||+|+.+....+++++|+++|++|+|+++|||++|+|+|+||+++|||||||||++|||++||+|+|++
T Consensus         1 p~~~gkggk~~~r~K~~~~~~~~el~~p~ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~   80 (143)
T 1d7q_A            1 PKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL   80 (143)
T ss_dssp             CCCCCSSSSSSCCCCCCSCCCCCCCCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred             CCCCCCCCcccccccccchhhhhcccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEee
Confidence            89999999999999999888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCceEEEEEcChhHHHHHHHcCCCCccccccccccCCCCCCCCCCCCCcccc----cc-ccccCC
Q 032195           82 RDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEEDDGADNDYIEF----ED-EDIDKI  145 (145)
Q Consensus        82 ~~~~~~Kg~Ii~ry~~devk~L~k~g~wP~~f~~~~~~~~~~~~~~~~~~~~~~e~----~~-~~~~~~  145 (145)
                      |+|+++||+|+|||+++|++||+++|+||++|.++++++|+.+      ++++|+|    ++ +|||+|
T Consensus        81 ~~yd~~KG~Ii~r~~~devk~L~k~g~wP~~f~~~~~~~~~~~------~~~~~~f~~~~~~~~~~~~~  143 (143)
T 1d7q_A           81 RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPG------DDDEIQFDDIGDDDEDIDDI  143 (143)
T ss_dssp             SSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCSSSCC------CCCCCCCCCSCSSCCSCSCC
T ss_pred             ccCCCCeEEEEEEeCHHHHHHHHHcCCCChHHhhCccccccCC------CCccceeccCccchhccccC
Confidence            9999999999999999999999999999999999999999732      3344777    22 488887
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5 Back     alignment and structure
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5 Back     alignment and structure
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5 Back     alignment and structure
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W Back     alignment and structure
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Back     alignment and structure
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Back     alignment and structure
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Back     alignment and structure
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} Back     alignment and structure
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A Back     alignment and structure
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Back     alignment and structure
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii} Back     alignment and structure
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A Back     alignment and structure
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A Back     alignment and structure
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Back     alignment and structure
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Back     alignment and structure
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1 Back     alignment and structure
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5 Back     alignment and structure
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Back     alignment and structure
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A Back     alignment and structure
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Back     alignment and structure
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 145
d1d7qa_143 b.40.4.5 (A:) Translation initiation factor-1a, eI 3e-51
d1jt8a_102 b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a 3e-34
d1ah9a_71 b.40.4.5 (A:) Translational initiation factor 1, I 1e-19
d1hr0w_71 b.40.4.5 (W:) Translational initiation factor 1, I 2e-16
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translation initiation factor-1a, eIF1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  157 bits (399), Expect = 3e-51
 Identities = 105/144 (72%), Positives = 115/144 (79%), Gaps = 1/144 (0%)

Query: 2   PKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHI 61
           PKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHI
Sbjct: 1   PKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHI 60

Query: 62  RGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAG 121
           RGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    
Sbjct: 61  RGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTF 120

Query: 122 GLDEEDDGADNDYIEFEDEDIDKI 145
           G   +DD    D I  +DEDID I
Sbjct: 121 G-PGDDDEIQFDDIGDDDEDIDDI 143
>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 102 Back     information, alignment and structure
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Length = 71 Back     information, alignment and structure
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Length = 71 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query145
d1d7qa_143 Translation initiation factor-1a, eIF1a {Human (Ho 100.0
d1jt8a_102 Archaeal initiation factor-1a, aIF1a {Archaeon Met 99.97
d1ah9a_71 Translational initiation factor 1, IF1 {Escherichi 99.91
d1hr0w_71 Translational initiation factor 1, IF1 {Escherichi 99.87
d1t9ha167 Probable GTPase EngC (YjeQ), N-terminal domain {Ba 98.5
d1u0la166 Probable GTPase EngC (YjeQ), N-terminal domain {Th 98.45
d1kl9a286 Eukaryotic initiation factor 2alpha, eIF2alpha, N- 89.29
d3d3ra176 Hydrogenase expression/formation protein HypC {She 87.18
d1g291471 Maltose transport protein MalK, C-terminal domain 82.92
d1h9ma268 Cytoplasmic molybdate-binding protein ModG {Azotob 81.26
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translation initiation factor-1a, eIF1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-42  Score=262.57  Aligned_cols=143  Identities=73%  Similarity=1.141  Sum_probs=128.7

Q ss_pred             CCCCCCCCcccccCCCcccccceeeecCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEe
Q 032195            2 PKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL   81 (145)
Q Consensus         2 ~~~~~~g~kn~r~~k~~~~~~~~el~~p~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~   81 (145)
                      |||+|+|+||+|++++.+....++++.|+++|+||+|+++||+++|+|.|+||.++||+||||||+++||.+||+|||.+
T Consensus         1 pKN~~~g~k~kk~~k~~~~~~~~~l~~~ee~e~ya~V~k~lG~~~~~V~~~dg~~rl~~irgk~r~r~~i~~Gd~VlV~~   80 (143)
T d1d7qa_           1 PKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL   80 (143)
T ss_dssp             CCCCCSSSSSSCCCCCCSCCCCCCCCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred             CCCCCCCccccccccccCcccceeeccCCCCeEEEEEEEEcCCCEEEEEECCCCEEEEEecCcceeEEEEeCCCEEEEec
Confidence            99999999999999988888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCceEEEEEcChhHHHHHHHcCCCCccccccccccCCCCCCCCCCCCCccccccccccCC
Q 032195           82 RDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEEDDGADNDYIEFEDEDIDKI  145 (145)
Q Consensus        82 ~~~~~~Kg~Ii~ry~~devk~L~k~g~wP~~f~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  145 (145)
                      |+|++.||+|+|+|+++|+++|+++++||..|..+..+.++..++++ ..-.++.++++|+|+|
T Consensus        81 rd~e~~K~DIl~~Y~~~e~~~L~~~~~ip~~~~~~~~~~~~~~~d~~-i~F~~~~~dd~d~d~i  143 (143)
T d1d7qa_          81 RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE-IQFDDIGDDDEDIDDI  143 (143)
T ss_dssp             SSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCSSSCCCCCC-CCCCCSCSSCCSCSCC
T ss_pred             cCCcCcEEEEEEECCHHHHHHHHHCCCCChhhhhccccCCCCccccc-eeecCCCCCccccccC
Confidence            99999999999999999999999999999999888877777663222 2223344478888886
>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation protein HypC {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure
>d1g2914 b.40.6.3 (1:302-372) Maltose transport protein MalK, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1h9ma2 b.40.6.2 (A:74-141) Cytoplasmic molybdate-binding protein ModG {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure