BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032196
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q65WT0|BD31B_ORYSJ Protein BUD31 homolog 2 OS=Oryza sativa subsp. japonica
GN=Os05g0446300 PE=2 SV=1
Length = 145
Score = 266 bits (680), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 120/145 (82%), Positives = 136/145 (93%)
Query: 1 MPKVRTNRTKYPDGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYI 60
MPK++T+R KYP+GWELI PTLR++EAKMREAENDPHDGKRKCE LWPIF+I+HQ+S+YI
Sbjct: 1 MPKIKTSRVKYPEGWELIEPTLRDLEAKMREAENDPHDGKRKCEALWPIFRISHQKSRYI 60
Query: 61 FELYYKRNEISKELYEFCLDQGYGDSNLIAKWKKPGYERLCCLRCIQPRDHNFGTTCVCR 120
++LYY+R EISKELYEFCLDQG+ D NLIAKWKKPGYERLCCLRCIQ RDHNF TTCVCR
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGHADKNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 121 VPKHLREEKHVECVHCGCKGCASGD 145
VPKHLREEK +ECVHCGC+GCASGD
Sbjct: 121 VPKHLREEKVIECVHCGCRGCASGD 145
>sp|Q94DE2|BD31A_ORYSJ Protein BUD31 homolog 1 OS=Oryza sativa subsp. japonica
GN=Os01g0857700 PE=2 SV=1
Length = 145
Score = 265 bits (676), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 120/145 (82%), Positives = 134/145 (92%)
Query: 1 MPKVRTNRTKYPDGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYI 60
MPK++T+R KYP GWELI PT+RE++AKMREAEND HDGKRKCE LWPIF+I+HQRS+YI
Sbjct: 1 MPKIKTSRVKYPGGWELIEPTIRELDAKMREAENDTHDGKRKCEALWPIFRISHQRSRYI 60
Query: 61 FELYYKRNEISKELYEFCLDQGYGDSNLIAKWKKPGYERLCCLRCIQPRDHNFGTTCVCR 120
++LYY+R EISKELYEFCLDQGY D NLIAKWKKPGYERLCCLRCIQ RDHNF TTCVCR
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 121 VPKHLREEKHVECVHCGCKGCASGD 145
VPKHLREEK +ECVHCGC+GCASGD
Sbjct: 121 VPKHLREEKVIECVHCGCRGCASGD 145
>sp|P35682|BD31C_ORYSJ Protein BUD31 homolog 3 OS=Oryza sativa subsp. japonica
GN=Os12g0149800 PE=2 SV=2
Length = 145
Score = 255 bits (652), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 116/145 (80%), Positives = 130/145 (89%)
Query: 1 MPKVRTNRTKYPDGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYI 60
MPK++T+ KYPDGWELI PTL E+ +KMREAENDPHDG+RKCE LWPIFKI HQRS+Y+
Sbjct: 1 MPKIKTSGVKYPDGWELIEPTLSELHSKMREAENDPHDGRRKCEALWPIFKINHQRSRYL 60
Query: 61 FELYYKRNEISKELYEFCLDQGYGDSNLIAKWKKPGYERLCCLRCIQPRDHNFGTTCVCR 120
++LYY R EIS+ELYEFCLDQG+ D NLIAKWKK GYERLCCLRCIQ RDHNF TTCVCR
Sbjct: 61 YDLYYNRKEISQELYEFCLDQGHADRNLIAKWKKQGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 121 VPKHLREEKHVECVHCGCKGCASGD 145
VPKHLREE+ +ECVHCGCKGCASGD
Sbjct: 121 VPKHLREEQVIECVHCGCKGCASGD 145
>sp|Q962X9|BUD31_BRABE Protein BUD31 homolog OS=Branchiostoma belcheri PE=2 SV=1
Length = 144
Score = 209 bits (532), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 98/144 (68%), Positives = 116/144 (80%), Gaps = 1/144 (0%)
Query: 1 MPKVRTNRTKYPDGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYI 60
MPKVR +R P+GWELI PTL E++ KMREAE +PH+GKRK E LWPIFKI HQ+S+YI
Sbjct: 1 MPKVRRSRKPPPEGWELIEPTLDELDQKMREAETEPHEGKRKVEALWPIFKIHHQKSRYI 60
Query: 61 FELYYKRNEISKELYEFCLDQGYGDSNLIAKWKKPGYERLCCLRCIQPRDHNFGTTCVCR 120
F+L+Y+R IS+ELYE+CL +G D NLIAKWKK GYE LCCLRCIQ RD NFGT C+CR
Sbjct: 61 FDLFYRRKAISRELYEYCLKEGIADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR 120
Query: 121 VPKH-LREEKHVECVHCGCKGCAS 143
VPK L E + VECVHCGC+GC+
Sbjct: 121 VPKSKLEEGRIVECVHCGCRGCSG 144
>sp|O70454|BUD31_RAT Protein BUD31 homolog OS=Rattus norvegicus GN=Bud31 PE=2 SV=2
Length = 144
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/144 (65%), Positives = 116/144 (80%), Gaps = 1/144 (0%)
Query: 1 MPKVRTNRTKYPDGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYI 60
MPKV+ +R PDGWELI PTL E++ KMREAE +PH+GKRK E+LWPIF+I HQ+++YI
Sbjct: 1 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI 60
Query: 61 FELYYKRNEISKELYEFCLDQGYGDSNLIAKWKKPGYERLCCLRCIQPRDHNFGTTCVCR 120
F+L+YKR IS+ELYE+C+ +GY D NLIAKWKK GYE LCCLRCIQ RD NFGT C+CR
Sbjct: 61 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR 120
Query: 121 VPKH-LREEKHVECVHCGCKGCAS 143
VPK L + +EC HCGC+GC+
Sbjct: 121 VPKSKLEVGRIIECTHCGCRGCSG 144
>sp|P41223|BUD31_HUMAN Protein BUD31 homolog OS=Homo sapiens GN=BUD31 PE=1 SV=2
Length = 144
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/144 (65%), Positives = 116/144 (80%), Gaps = 1/144 (0%)
Query: 1 MPKVRTNRTKYPDGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYI 60
MPKV+ +R PDGWELI PTL E++ KMREAE +PH+GKRK E+LWPIF+I HQ+++YI
Sbjct: 1 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI 60
Query: 61 FELYYKRNEISKELYEFCLDQGYGDSNLIAKWKKPGYERLCCLRCIQPRDHNFGTTCVCR 120
F+L+YKR IS+ELYE+C+ +GY D NLIAKWKK GYE LCCLRCIQ RD NFGT C+CR
Sbjct: 61 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR 120
Query: 121 VPKH-LREEKHVECVHCGCKGCAS 143
VPK L + +EC HCGC+GC+
Sbjct: 121 VPKSKLEVGRIIECTHCGCRGCSG 144
>sp|Q2NKU3|BUD31_BOVIN Protein BUD31 homolog OS=Bos taurus GN=BUD31 PE=2 SV=1
Length = 144
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/144 (65%), Positives = 116/144 (80%), Gaps = 1/144 (0%)
Query: 1 MPKVRTNRTKYPDGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYI 60
MPKV+ +R PDGWELI PTL E++ KMREAE +PH+GKRK E+LWPIF+I HQ+++YI
Sbjct: 1 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI 60
Query: 61 FELYYKRNEISKELYEFCLDQGYGDSNLIAKWKKPGYERLCCLRCIQPRDHNFGTTCVCR 120
F+L+YKR IS+ELYE+C+ +GY D NLIAKWKK GYE LCCLRCIQ RD NFGT C+CR
Sbjct: 61 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR 120
Query: 121 VPKH-LREEKHVECVHCGCKGCAS 143
VPK L + +EC HCGC+GC+
Sbjct: 121 VPKSKLEVGRIIECTHCGCRGCSG 144
>sp|P12805|BUD31_XENLA Protein BUD31 homolog OS=Xenopus laevis GN=bud31 PE=2 SV=1
Length = 144
Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/144 (65%), Positives = 116/144 (80%), Gaps = 1/144 (0%)
Query: 1 MPKVRTNRTKYPDGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYI 60
MPKV+ +R PDGWELI PTL E++ KMREAE DPH+GKRK E+LWPIF+I HQ+++YI
Sbjct: 1 MPKVKRSRKPPPDGWELIEPTLDELDQKMREAETDPHEGKRKVESLWPIFRIHHQKTRYI 60
Query: 61 FELYYKRNEISKELYEFCLDQGYGDSNLIAKWKKPGYERLCCLRCIQPRDHNFGTTCVCR 120
F+L+YKR IS+ELY++C+ +GY D NLIAKWKK GYE LCCLRCIQ RD NFGT C+CR
Sbjct: 61 FDLFYKRKAISRELYDYCIREGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR 120
Query: 121 VPK-HLREEKHVECVHCGCKGCAS 143
VPK L + +EC HCGC+GC+
Sbjct: 121 VPKTKLEVGRIIECTHCGCRGCSG 144
>sp|Q567Z7|BUD31_DANRE Protein BUD31 homolog OS=Danio rerio GN=bud31 PE=2 SV=1
Length = 144
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/144 (64%), Positives = 115/144 (79%), Gaps = 1/144 (0%)
Query: 1 MPKVRTNRTKYPDGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYI 60
MPKV+ +R PDGWEL+ PTL E++ KMREAE +PH+GKRK E+LWPIF++ HQRS+YI
Sbjct: 1 MPKVKRSRKPPPDGWELVEPTLDELDQKMREAETEPHEGKRKVESLWPIFRLHHQRSRYI 60
Query: 61 FELYYKRNEISKELYEFCLDQGYGDSNLIAKWKKPGYERLCCLRCIQPRDHNFGTTCVCR 120
F+L+YKR IS+ELY++C+ GY D NLIAKWKK GYE LCCLRCIQ RD NFGT C+CR
Sbjct: 61 FDLFYKRKAISRELYKYCIRGGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR 120
Query: 121 VPK-HLREEKHVECVHCGCKGCAS 143
VPK L + +EC HCGC+GC+
Sbjct: 121 VPKGKLEVGRIIECTHCGCRGCSG 144
>sp|P34313|BUD31_CAEEL Protein BUD31 homolog OS=Caenorhabditis elegans GN=C07A9.2 PE=2
SV=1
Length = 147
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 110/141 (78%), Gaps = 1/141 (0%)
Query: 3 KVRTNRTKYPDGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYIFE 62
K+R R P+GW+LI PTL + EAKMREAE +PH+GKRK E WPIF+I HQRS+Y+++
Sbjct: 6 KLRRVRKSPPEGWDLIEPTLEQFEAKMREAETEPHEGKRKTEINWPIFRIHHQRSRYVYD 65
Query: 63 LYYKRNEISKELYEFCLDQGYGDSNLIAKWKKPGYERLCCLRCIQPRDHNFGTTCVCRVP 122
+YYK+ EIS+ELYEFCL + D+ LIAKWKK GYE LCC++C+ RD NFGT C+CRVP
Sbjct: 66 MYYKKAEISRELYEFCLTAKFADAALIAKWKKQGYENLCCVKCVNTRDSNFGTACICRVP 125
Query: 123 KH-LREEKHVECVHCGCKGCA 142
K L E+ +ECVHCGC GC+
Sbjct: 126 KSKLDAERVIECVHCGCHGCS 146
>sp|O74772|CWF14_SCHPO Pre-mRNA-splicing factor cwf14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf14 PE=1 SV=1
Length = 146
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 108/147 (73%), Gaps = 3/147 (2%)
Query: 1 MPKVRTNRTKYP-DGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQY 59
MP++RT+RTK P DG++ I PTL E + +MR+ EN G K E L PIF++ HQRS+Y
Sbjct: 1 MPRLRTSRTKRPPDGFDEIEPTLIEFQDRMRQIENTMGKGT-KTEMLAPIFQLHHQRSRY 59
Query: 60 IFELYYKRNEISKELYEFCLDQGYGDSNLIAKWKKPGYERLCCLRCIQPRDHNFGTTCVC 119
I++LYYKR IS ELY + L Q Y D NLIAKWKKPGYE+LCCLRCIQ + FG+TC+C
Sbjct: 60 IYDLYYKREAISTELYNWLLKQNYADGNLIAKWKKPGYEKLCCLRCIQTAESKFGSTCIC 119
Query: 120 RVPKH-LREEKHVECVHCGCKGCASGD 145
RVPK L +++ V C HCGC GCAS D
Sbjct: 120 RVPKSKLDKDQRVRCTHCGCNGCASCD 146
>sp|P25337|BUD31_YEAST Pre-mRNA-splicing factor BUD31 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BUD31 PE=1 SV=1
Length = 157
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 106/157 (67%), Gaps = 12/157 (7%)
Query: 1 MPKVRTNRTK-YPDGWELIAPTLREMEAKMREAENDPHD--GKRKCETLWPIFKIAHQRS 57
MP+++T R+K PDG+E I PTL + E ++R+A+ D + E LW I ++ HQRS
Sbjct: 1 MPRIKTRRSKPAPDGFEKIKPTLTDFEIQLRDAQKDKSSKLAAKSNEQLWEIMQLHHQRS 60
Query: 58 QYIFELYYKRNEISKELYEFCLDQGYGDSNLIAKWKKPGYERLCCLRCIQPRDHNFGTTC 117
+YI+ LYYKR ISK+LY++ + + Y D LIAKW+K GYE+LCCLRCIQ + N G+TC
Sbjct: 61 RYIYTLYYKRKAISKDLYDWLIKEKYADKLLIAKWRKTGYEKLCCLRCIQKNETNNGSTC 120
Query: 118 VCRVPKHLREEKHV---------ECVHCGCKGCASGD 145
+CRVP+ EE+ +CVHCGC+GCAS D
Sbjct: 121 ICRVPRAQLEEEARKKGTQVSFHQCVHCGCRGCASTD 157
>sp|Q6PGH1|BUD31_MOUSE Protein BUD31 homolog OS=Mus musculus GN=Bud31 PE=2 SV=1
Length = 103
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 80/144 (55%), Gaps = 42/144 (29%)
Query: 1 MPKVRTNRTKYPDGWELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYI 60
MPKV+ +R PDGWELI PTL E++ KMRE
Sbjct: 1 MPKVKRSRKAPPDGWELIEPTLDELDQKMRE----------------------------- 31
Query: 61 FELYYKRNEISKELYEFCLDQGYGDSNLIAKWKKPGYERLCCLRCIQPRDHNFGTTCVCR 120
ELYE+C+ +GY D NLIAKWKK GYE LCCLRCIQ RD NFGT C+CR
Sbjct: 32 ------------ELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR 79
Query: 121 VPKH-LREEKHVECVHCGCKGCAS 143
VPK L + +EC HCGC+GC+
Sbjct: 80 VPKSKLEVGRIIECTHCGCRGCSG 103
>sp|Q03001|DYST_HUMAN Dystonin OS=Homo sapiens GN=DST PE=1 SV=4
Length = 7570
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Query: 15 WELIAPTLREMEAKMREAENDPHDGKRKCETLWPIFKIAHQRSQYIFELYYKRNEISKEL 74
W+ ++E E K++E+ K + ETLWP + + + + E
Sbjct: 4936 WDTFNKQVKERENKLKESLEKALKYKEQVETLWP---------------WIDKCQNNLEE 4980
Query: 75 YEFCLDQGYGDSNLIAKWK 93
+FCLD G+ N IAK K
Sbjct: 4981 IKFCLDPAEGE-NSIAKLK 4998
>sp|Q5AZY1|MRH4_EMENI ATP-dependent RNA helicase mrh4, mitochondrial OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=mrh4 PE=3 SV=1
Length = 630
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 8 RTKYPDGWELIAPTL----REMEAKMREAENDPHDGKRK---CETLWPIFK 51
R YPD W L P L R ++ + + + DP+ G R + +W I K
Sbjct: 398 RKLYPDIWRLTTPNLHAIPRRVQLGVVDIQKDPYRGNRNLACADVIWSIGK 448
>sp|Q80T14|FRAS1_MOUSE Extracellular matrix protein FRAS1 OS=Mus musculus GN=Fras1 PE=2
SV=2
Length = 4010
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 102 CLRCIQPRDHNFGTTCVCRVPK-HLREEKHVECVHCGCKGCASG 144
CL+C R G CV P H +E + H C+ C +G
Sbjct: 826 CLKCQHARHLLLGDHCVPECPPGHYKERGTCKTCHSSCRSCQNG 869
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.474
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,744,834
Number of Sequences: 539616
Number of extensions: 2515629
Number of successful extensions: 5196
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5150
Number of HSP's gapped (non-prelim): 37
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)