Query 032196
Match_columns 145
No_of_seqs 103 out of 156
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 17:39:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032196.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032196hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ci0k1 a.60.16.1 (K:204-274) 39.2 3.7 0.00027 26.3 0.5 15 9-23 35-49 (71)
2 d1twfl_ g.41.9.2 (L:) RBP12 su 38.8 3.8 0.00028 24.6 0.5 16 124-139 15-30 (46)
3 d2ho2a1 b.72.1.1 (A:253-285) A 37.2 1.4 0.0001 25.0 -1.6 10 11-20 3-12 (33)
4 d1ou8a_ b.136.1.1 (A:) Stringe 36.9 7.3 0.00053 26.7 1.8 15 70-84 8-22 (106)
5 d1yfna1 b.136.1.1 (A:4-111) St 34.3 8.5 0.00062 26.4 1.8 15 70-84 10-24 (108)
6 d1ydxa1 d.287.1.2 (A:1-193) Bi 33.2 46 0.0033 21.5 5.5 19 15-33 146-164 (193)
7 d1a0pa1 a.60.9.1 (A:3-100) Rec 30.6 10 0.00073 23.8 1.6 31 58-88 55-94 (98)
8 d2qtva4 d.109.2.1 (A:627-768) 29.4 5.5 0.0004 28.7 0.1 12 87-98 42-53 (142)
9 d1hf2a2 c.102.1.1 (A:1-99) Cel 28.7 19 0.0014 24.4 2.8 28 13-40 16-43 (99)
10 d1weva_ g.50.1.2 (A:) PHD fing 26.8 10 0.00076 23.5 1.1 24 114-137 16-40 (88)
11 d1m0ja_ g.46.1.1 (A:) Metallot 25.5 9.8 0.00071 20.3 0.6 11 131-141 17-27 (28)
12 d2gana1 d.108.1.1 (A:1-182) Hy 23.2 10 0.00073 25.6 0.5 56 45-100 94-165 (182)
13 d1z4ea1 d.108.1.1 (A:4-153) Tr 22.4 14 0.001 23.4 1.0 35 65-99 94-141 (150)
No 1
>d3ci0k1 a.60.16.1 (K:204-274) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=39.15 E-value=3.7 Score=26.30 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=13.1
Q ss_pred CCCCCChhchHHHHH
Q 032196 9 TKYPDGWELIAPTLR 23 (145)
Q Consensus 9 k~pP~G~e~Ie~tL~ 23 (145)
.+|++||+.|++.+.
T Consensus 35 ~RP~~Gw~sv~~F~~ 49 (71)
T d3ci0k1 35 QRPAKGWEDVDQFLA 49 (71)
T ss_dssp TCCTTCCSCHHHHHT
T ss_pred hCCcchhhhHHHHHh
Confidence 569999999999875
No 2
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.77 E-value=3.8 Score=24.58 Aligned_cols=16 Identities=31% Similarity=0.773 Sum_probs=13.5
Q ss_pred ccccCCeecccccccc
Q 032196 124 HLREEKHVECVHCGCK 139 (145)
Q Consensus 124 ~l~~~~~~~Cv~CGC~ 139 (145)
.|..+..+.|..||++
T Consensus 15 ~l~~~d~irCreCG~R 30 (46)
T d1twfl_ 15 SLSRTDAVRCKDCGHR 30 (46)
T ss_dssp CCCTTSTTCCSSSCCC
T ss_pred EeCCCCcEEeccCCcE
Confidence 5677788999999987
No 3
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.16 E-value=1.4 Score=24.95 Aligned_cols=10 Identities=30% Similarity=0.870 Sum_probs=8.1
Q ss_pred CCCChhchHH
Q 032196 11 YPDGWELIAP 20 (145)
Q Consensus 11 pP~G~e~Ie~ 20 (145)
-|+||++|++
T Consensus 3 LPpGW~ki~D 12 (33)
T d2ho2a1 3 LPAGWMRVQD 12 (33)
T ss_dssp SCTTEEEEEC
T ss_pred CCCcceeeec
Confidence 3889999876
No 4
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]}
Probab=36.86 E-value=7.3 Score=26.70 Aligned_cols=15 Identities=13% Similarity=0.614 Sum_probs=12.2
Q ss_pred hhHHHHHHHHhcCCC
Q 032196 70 ISKELYEFCLDQGYG 84 (145)
Q Consensus 70 ISreLY~~~lk~~ya 84 (145)
+=|.+||||+++++-
T Consensus 8 LiRA~y~W~~Dn~~T 22 (106)
T d1ou8a_ 8 LLRAYYDWLVDNSFT 22 (106)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHCCCC
Confidence 447899999999953
No 5
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=34.25 E-value=8.5 Score=26.42 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=12.3
Q ss_pred hhHHHHHHHHhcCCC
Q 032196 70 ISKELYEFCLDQGYG 84 (145)
Q Consensus 70 ISreLY~~~lk~~ya 84 (145)
+=|.|||||+++|+-
T Consensus 10 liRA~y~W~~Dn~~T 24 (108)
T d1yfna1 10 LLRAFYEWLLDNQLT 24 (108)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHCCCC
Confidence 457899999999953
No 6
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=33.15 E-value=46 Score=21.54 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=13.7
Q ss_pred hhchHHHHHHHHHHHHHhh
Q 032196 15 WELIAPTLREMEAKMREAE 33 (145)
Q Consensus 15 ~e~Ie~tL~e~~~kmreae 33 (145)
=+.|...|+.+++++...+
T Consensus 146 Q~~I~~~l~~ld~~i~~~~ 164 (193)
T d1ydxa1 146 QHAIANTLSVFDERLENLA 164 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777888888877654
No 7
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=30.65 E-value=10 Score=23.77 Aligned_cols=31 Identities=13% Similarity=0.400 Sum_probs=19.2
Q ss_pred hhHHhhh---hhhhhhhH------HHHHHHHhcCCCCHHH
Q 032196 58 QYIFELY---YKRNEISK------ELYEFCLDQGYGDSNL 88 (145)
Q Consensus 58 RYIydly---Yk~k~ISr------eLY~~~lk~~yaD~~L 88 (145)
.|+-.|. ++...|.+ -+|.||.++|+++.|=
T Consensus 55 ~yl~~l~~~g~s~~Ti~r~lsalr~ff~~l~~~~~i~~nP 94 (98)
T d1a0pa1 55 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDP 94 (98)
T ss_dssp HHHHSCC-------CHHHHHHHHHHHHHHHHHTTSSSSCT
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHCCCcCcCc
Confidence 5665553 23344554 4699999999998763
No 8
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.45 E-value=5.5 Score=28.65 Aligned_cols=12 Identities=50% Similarity=1.212 Sum_probs=10.4
Q ss_pred HHHhhhcccccc
Q 032196 87 NLIAKWKKPGYE 98 (145)
Q Consensus 87 ~LIaKWkK~GYE 98 (145)
.-||.|+|+||.
T Consensus 42 ~~Ia~Wrkagy~ 53 (142)
T d2qtva4 42 EQIAQWRKAGYQ 53 (142)
T ss_dssp HHHHHHHHHTGG
T ss_pred cHHHHHHHcCCc
Confidence 568999999984
No 9
>d1hf2a2 c.102.1.1 (A:1-99) Cell-division inhibitor MinC, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=28.68 E-value=19 Score=24.40 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=23.2
Q ss_pred CChhchHHHHHHHHHHHHHhhCCCCCCC
Q 032196 13 DGWELIAPTLREMEAKMREAENDPHDGK 40 (145)
Q Consensus 13 ~G~e~Ie~tL~e~~~kmreae~e~~~gk 40 (145)
+.|+.||+.|+|.++||.++-+=..+|.
T Consensus 16 ~~Y~~lE~llneI~~K~~~m~~FFa~gd 43 (99)
T d1hf2a2 16 KDYQNLEEVLNAISARITQMGGFFAKGD 43 (99)
T ss_dssp CCCSCHHHHHHHHHHHHHHTGGGCCTTC
T ss_pred cchhhHHHHHHHHHHHHHHHHhhhcCCC
Confidence 5689999999999999999876555553
No 10
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.80 E-value=10 Score=23.53 Aligned_cols=24 Identities=38% Similarity=0.791 Sum_probs=16.4
Q ss_pred Ccce-EEecccccccCCeecccccc
Q 032196 114 GTTC-VCRVPKHLREEKHVECVHCG 137 (145)
Q Consensus 114 gttC-ICRVPk~l~~~~~~~Cv~CG 137 (145)
+.+| ||+.+-..+.+.++.|..|+
T Consensus 16 ~~~C~iC~~~~~~~~~~~v~Cd~C~ 40 (88)
T d1weva_ 16 GLACVVCRQMTVASGNQLVECQECH 40 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSC
T ss_pred cCCccCCCCccCCCCCeEEEcCCCC
Confidence 3456 89876544556688888764
No 11
>d1m0ja_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}
Probab=25.47 E-value=9.8 Score=20.32 Aligned_cols=11 Identities=45% Similarity=1.546 Sum_probs=8.6
Q ss_pred ecccccccccc
Q 032196 131 VECVHCGCKGC 141 (145)
Q Consensus 131 ~~Cv~CGC~GC 141 (145)
-.|.+|.|++|
T Consensus 17 ctctncscksc 27 (28)
T d1m0ja_ 17 CTCTNCSCKSC 27 (28)
T ss_dssp CCSSSCCCTTT
T ss_pred eeecCcccccC
Confidence 46788988887
No 12
>d2gana1 d.108.1.1 (A:1-182) Hypothetical protein PH0736 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.19 E-value=10 Score=25.62 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=38.7
Q ss_pred cccceeecccchhhhHHhhh----hhhhhhhHHHHHHHHh----cCC--------CCHHHHhhhcccccccc
Q 032196 45 TLWPIFKIAHQRSQYIFELY----YKRNEISKELYEFCLD----QGY--------GDSNLIAKWKKPGYERL 100 (145)
Q Consensus 45 ~lWpI~rI~hqrSRYIydly----Yk~k~ISreLY~~~lk----~~y--------aD~~LIaKWkK~GYE~L 100 (145)
..|..+.-+..++-||..|+ |+++-|.+.|.+++++ .|+ .+...+.-++|.||+.+
T Consensus 94 ~~~~~~~~~~~~~~~I~~l~V~p~~rg~GiG~~Ll~~~~~~ak~~G~~~~l~~~~~n~~a~~fY~k~GF~~~ 165 (182)
T d2gana1 94 IWWVPEELMNEKVGLIEFFVVDPEFQGKGIGSTLLEFAVKRLRSLGKDPYVVTFPNLEAYSYYYMKKGFREI 165 (182)
T ss_dssp CTTCCGGGCSTTEEEEEEEEECTTSTTSSHHHHHHHHHHHHHHHTTCEEEEEECGGGSHHHHHHHTTTEEEE
T ss_pred ccccccccCCCCEEEEEEEEECHhhcCCCHHHHHHHHHHHHHHHcCCeEEEEEccCCHHHHHHHHHCCCEEe
Confidence 35666666677888888887 7888888888877665 443 12234557788888764
No 13
>d1z4ea1 d.108.1.1 (A:4-153) Transcriptional regulator BH1968 {Bacillus halodurans [TaxId: 86665]}
Probab=22.40 E-value=14 Score=23.36 Aligned_cols=35 Identities=11% Similarity=0.364 Sum_probs=25.1
Q ss_pred hhhhhhhHHHHHHHHhc----CCC---------CHHHHhhhccccccc
Q 032196 65 YKRNEISKELYEFCLDQ----GYG---------DSNLIAKWKKPGYER 99 (145)
Q Consensus 65 Yk~k~ISreLY~~~lk~----~ya---------D~~LIaKWkK~GYE~ 99 (145)
|+++-|.+.|++++++. |+- +...++-|+|.||++
T Consensus 94 ~rg~Gig~~l~~~~~~~a~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~ 141 (150)
T d1z4ea1 94 ARGQGIGSQLVCWAIERAKERGCHLIQLTTDKQRPDALRFYEQLGFKA 141 (150)
T ss_dssp STTSSHHHHHHHHHHHHHHHTTEEEEEEEEETTCTTHHHHHHHHTCEE
T ss_pred HcCCChhHHHHHHHHHHHHHcCCCEEEEEEcCCCHHHHHHHHHCCCEE
Confidence 57778999988886553 321 345788899999975
Done!