BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032198
MASSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRV
PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWL
NTHGPGDRTLTEGLKQDFSHLQLIL

High Scoring Gene Products

Symbol, full name Information P value
PETC
photosynthetic electron transfer C
protein from Arabidopsis thaliana 1.2e-40

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032198
        (145 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2005534 - symbol:PETC "photosynthetic electron...   432  1.2e-40   1


>TAIR|locus:2005534 [details] [associations]
            symbol:PETC "photosynthetic electron transfer C"
            species:3702 "Arabidopsis thaliana" [GO:0008121
            "ubiquinol-cytochrome-c reductase activity" evidence=IEA]
            [GO:0009496 "plastoquinol--plastocyanin reductase activity"
            evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0016679
            "oxidoreductase activity, acting on diphenols and related
            substances as donors" evidence=IEA] [GO:0051537 "2 iron, 2 sulfur
            cluster binding" evidence=IEA] [GO:0055114 "oxidation-reduction
            process" evidence=IEA] [GO:0010196 "nonphotochemical quenching"
            evidence=IMP] [GO:0009512 "cytochrome b6f complex" evidence=TAS]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA;TAS]
            [GO:0009767 "photosynthetic electron transport chain" evidence=TAS]
            [GO:0046028 "electron transporter, transferring electrons from
            cytochrome b6/f complex of photosystem II activity" evidence=TAS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0042742 "defense response to bacterium" evidence=IEP;RCA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0080167 "response to karrikin"
            evidence=IEP] [GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006098
            "pentose-phosphate shunt" evidence=RCA] [GO:0006364 "rRNA
            processing" evidence=RCA] [GO:0006612 "protein targeting to
            membrane" evidence=RCA] [GO:0009409 "response to cold"
            evidence=RCA] [GO:0009595 "detection of biotic stimulus"
            evidence=RCA] [GO:0009657 "plastid organization" evidence=RCA]
            [GO:0009697 "salicylic acid biosynthetic process" evidence=RCA]
            [GO:0009814 "defense response, incompatible interaction"
            evidence=RCA] [GO:0009862 "systemic acquired resistance, salicylic
            acid mediated signaling pathway" evidence=RCA] [GO:0009867
            "jasmonic acid mediated signaling pathway" evidence=RCA]
            [GO:0010200 "response to chitin" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0010310 "regulation of
            hydrogen peroxide metabolic process" evidence=RCA] [GO:0010363
            "regulation of plant-type hypersensitive response" evidence=RCA]
            [GO:0019684 "photosynthesis, light reaction" evidence=RCA]
            [GO:0031348 "negative regulation of defense response" evidence=RCA]
            [GO:0043900 "regulation of multi-organism process" evidence=RCA]
            [GO:0050832 "defense response to fungus" evidence=RCA]
            InterPro:IPR005805 InterPro:IPR014349 InterPro:IPR014909
            InterPro:IPR017941 InterPro:IPR023960 Pfam:PF00355 Pfam:PF08802
            PRINTS:PR00162 PROSITE:PS51296 GO:GO:0016021 GO:GO:0005886
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0042742
            GO:GO:0009941 GO:GO:0080167 GO:GO:0051537 Gene3D:2.102.10.10
            SUPFAM:SSF50022 GO:GO:0009535 GO:GO:0009767 EMBL:AL161496
            GO:GO:0010196 EMBL:AC005275 GO:GO:0009512 GO:GO:0045158
            GO:GO:0008121 UniGene:At.486 eggNOG:COG0723 EMBL:AJ292972
            EMBL:AJ243702 EMBL:AF370566 EMBL:AF410296 EMBL:AY093726
            IPI:IPI00530995 IPI:IPI00548912 PIR:F85041 PIR:PA0041
            RefSeq:NP_192237.1 RefSeq:NP_849295.1 UniGene:At.67366
            ProteinModelPortal:Q9ZR03 SMR:Q9ZR03 IntAct:Q9ZR03 STRING:Q9ZR03
            PaxDb:Q9ZR03 PRIDE:Q9ZR03 ProMEX:Q9ZR03 EnsemblPlants:AT4G03280.1
            GeneID:827996 KEGG:ath:AT4G03280 GeneFarm:5037 TAIR:At4g03280
            HOGENOM:HOG000255192 InParanoid:Q9ZR03 KO:K02636 OMA:GDPTYIV
            PhylomeDB:Q9ZR03 ProtClustDB:CLSN2685934 Genevestigator:Q9ZR03
            GermOnline:AT4G03280 GO:GO:0046028 GO:GO:0009496 PANTHER:PTHR10134
            Uniprot:Q9ZR03
        Length = 229

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 80/125 (64%), Positives = 98/125 (78%)

Query:    19 KGGMFCPSRAFLVKPART--QMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGA 76
             +  +   S    VKP +   QMV K  +G++I CQA+SIPADRVPDM KR+ +NLLLLGA
Sbjct:    16 RSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQASSIPADRVPDMEKRKTLNLLLLGA 75

Query:    77 VSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKQ 136
             +SLPTG+MLVPYATFF PPG G  GGGT AKDA+GND++AA+WL THGPGDRTLT+GLK 
Sbjct:    76 LSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWLKTHGPGDRTLTQGLKG 135

Query:   137 DFSHL 141
             D ++L
Sbjct:   136 DPTYL 140


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      145       129   0.00091  102 3  11 22  0.38    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  125 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.31u 0.16s 12.47t   Elapsed:  00:00:01
  Total cpu time:  12.31u 0.16s 12.47t   Elapsed:  00:00:01
  Start:  Fri May 10 20:22:11 2013   End:  Fri May 10 20:22:12 2013

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