BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032198
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P26291|UCRIA_PEA Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum
sativum GN=petC PE=2 SV=1
Length = 230
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/139 (67%), Positives = 110/139 (79%)
Query: 3 SSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPD 62
SS++LS TPSQLCS K G+ CPS A LVKP RTQM + GMKI CQATSIPADRVPD
Sbjct: 2 SSTTLSPTTPSQLCSGKSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPD 61
Query: 63 MGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNT 122
M KR+ +NLLLLGA+SLPT MLVPY +F PPG GS+ GGT AKDA+GND++A +WL T
Sbjct: 62 MSKRKTLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVATEWLKT 121
Query: 123 HGPGDRTLTEGLKQDFSHL 141
H PGDRTLT+GLK D ++L
Sbjct: 122 HAPGDRTLTQGLKGDPTYL 140
>sp|P08980|UCRIA_SPIOL Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Spinacia oleracea GN=petC PE=1 SV=2
Length = 230
Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 94/141 (66%), Positives = 114/141 (80%), Gaps = 3/141 (2%)
Query: 3 SSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQ-MVTKNPM-GMKIKCQATSIPADRV 60
+S +LSSATPSQLCSSK GMF PS A L K R +++K + GMK+ CQATSIPAD V
Sbjct: 2 ASFTLSSATPSQLCSSKNGMFAPSLA-LAKAGRVNVLISKERIRGMKLTCQATSIPADNV 60
Query: 61 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWL 120
PDM KR+ +NLLLLGA+SLPTG+ML+PYA+FF PPG G+ GGT AKDA+GND+IAA+WL
Sbjct: 61 PDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWL 120
Query: 121 NTHGPGDRTLTEGLKQDFSHL 141
TH PGDRTLT+GLK D ++L
Sbjct: 121 KTHAPGDRTLTQGLKGDPTYL 141
>sp|O49078|UCRIA_FRIAG Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Fritillaria agrestis GN=petC PE=2 SV=1
Length = 230
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 104/141 (73%)
Query: 1 MASSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRV 60
MAS++ ++ TPSQL ++K G + PSRA L K AR K + K+ CQATSIPADRV
Sbjct: 1 MASTTLSATPTPSQLSAAKNGAYSPSRALLGKTARGLYPEKEMVSRKVTCQATSIPADRV 60
Query: 61 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWL 120
PDMGKRQ MNLLLLGA+SLPT ML+PY FF PP G GGG AKDA+GNDI+AA WL
Sbjct: 61 PDMGKRQTMNLLLLGALSLPTAGMLIPYGAFFVPPSSGGGGGGIVAKDAVGNDIVAAAWL 120
Query: 121 NTHGPGDRTLTEGLKQDFSHL 141
THGPGDRTL +GL+ D ++L
Sbjct: 121 KTHGPGDRTLAQGLRGDPTYL 141
>sp|Q69S39|UCRIA_ORYSJ Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza
sativa subsp. japonica GN=petC PE=1 SV=1
Length = 225
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/142 (54%), Positives = 97/142 (68%), Gaps = 6/142 (4%)
Query: 1 MASSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQA-TSIPADR 59
MAS++ +++ P+QLC S+ + P + R I CQA +SIPADR
Sbjct: 1 MASTALSTASNPTQLCRSRASLGKPVKGLGFGRERVPRTATT-----ITCQAASSIPADR 55
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMGKRQLMNLLLLGA+SLPT MLVPY FF P G G+AGGG AKD +GND++A +W
Sbjct: 56 VPDMGKRQLMNLLLLGAISLPTVGMLVPYGAFFIPAGSGNAGGGQVAKDKLGNDVLAEEW 115
Query: 120 LNTHGPGDRTLTEGLKQDFSHL 141
L THGP DRTLT+GLK D ++L
Sbjct: 116 LKTHGPNDRTLTQGLKGDPTYL 137
>sp|Q7X9A6|UCRIA_WHEAT Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Triticum aestivum GN=petC PE=2 SV=1
Length = 222
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 7/141 (4%)
Query: 1 MASSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRV 60
MAS++ +++ P+QLC ++ C KP + + + I C A SI ADRV
Sbjct: 1 MASTALSTASNPTQLCRTRASSLC-------KPVKGLGFGRERIPRNITCMAGSISADRV 53
Query: 61 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWL 120
PDM KR+LMNLLLLGA+SLPT MLVPY +F P G GS GG AKD +GNDI+ DWL
Sbjct: 54 PDMSKRELMNLLLLGAISLPTFGMLVPYGSFLVPAGSGSNAGGVAAKDKLGNDILVEDWL 113
Query: 121 NTHGPGDRTLTEGLKQDFSHL 141
THGP DRTL +GLK D ++L
Sbjct: 114 KTHGPNDRTLAQGLKGDPTYL 134
>sp|Q9ZR03|UCRIA_ARATH Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Arabidopsis thaliana GN=petC PE=1 SV=1
Length = 229
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/141 (64%), Positives = 110/141 (78%), Gaps = 4/141 (2%)
Query: 3 SSSSLSSATPSQLCSSKGGMFCPSRAFLVKPAR--TQMVTKNPMGMKIKCQATSIPADRV 60
+SSSLS AT QL SS+ + S VKP + QMV K +G++I CQA+SIPADRV
Sbjct: 2 ASSSLSPAT--QLGSSRSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQASSIPADRV 59
Query: 61 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWL 120
PDM KR+ +NLLLLGA+SLPTG+MLVPYATFF PPG G GGGT AKDA+GND++AA+WL
Sbjct: 60 PDMEKRKTLNLLLLGALSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWL 119
Query: 121 NTHGPGDRTLTEGLKQDFSHL 141
THGPGDRTLT+GLK D ++L
Sbjct: 120 KTHGPGDRTLTQGLKGDPTYL 140
>sp|Q69GY7|UCRIA_SOLTU Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Solanum tuberosum GN=petC PE=2 SV=1
Length = 230
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/144 (62%), Positives = 105/144 (72%), Gaps = 8/144 (5%)
Query: 3 SSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD 58
+SS+LS TPSQLCSSK G+ S+A LVKP + + + MG MK KC A SIPAD
Sbjct: 2 ASSTLSHVTPSQLCSSKSGVSSVSQALLVKPMK---INGHGMGKDKRMKAKCMAASIPAD 58
Query: 59 -RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAA 117
RVPDM KR LMNLLLLGA++LPTG MLVPYATFFAPPG G GT AKDA GND++
Sbjct: 59 DRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSSGTIAKDANGNDVVVT 118
Query: 118 DWLNTHGPGDRTLTEGLKQDFSHL 141
+WL TH PG RTLT+GLK D ++L
Sbjct: 119 EWLKTHSPGTRTLTQGLKGDPTYL 142
>sp|Q02585|UCRIB_TOBAC Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic
OS=Nicotiana tabacum GN=petC2 PE=2 SV=1
Length = 228
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/144 (61%), Positives = 108/144 (75%), Gaps = 10/144 (6%)
Query: 3 SSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD 58
+SS+LS T QLCSSK G+ S+ L+KP + + + +G MK+KC ATSIPAD
Sbjct: 2 ASSTLSPVT--QLCSSKSGLSSVSQCLLLKPMK---INSHGLGKDKRMKVKCMATSIPAD 56
Query: 59 -RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAA 117
RVPDM KR LMNLLLLGA+SLPT MLVPYATFFAPPG G GGT AKDA+GND+IA+
Sbjct: 57 DRVPDMEKRNLMNLLLLGALSLPTAGMLVPYATFFAPPGSGGGSGGTPAKDALGNDVIAS 116
Query: 118 DWLNTHGPGDRTLTEGLKQDFSHL 141
+WL TH PG+RTLT+GLK D ++L
Sbjct: 117 EWLKTHPPGNRTLTQGLKGDPTYL 140
>sp|P30361|UCRIA_TOBAC Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic
OS=Nicotiana tabacum GN=petC1 PE=2 SV=2
Length = 228
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/144 (61%), Positives = 106/144 (73%), Gaps = 10/144 (6%)
Query: 3 SSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD 58
+SS+LS T QLCSSK G+ S+ LVKP + + + +G MK+KC ATSIPAD
Sbjct: 2 ASSTLSPVT--QLCSSKSGLSSVSQCLLVKPMK---INSHGLGKDKRMKVKCMATSIPAD 56
Query: 59 -RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAA 117
RVPDM KR LMNLLLLGA+SLPT MLVPY TFF PPG G GGT AKDA+GND+IA+
Sbjct: 57 DRVPDMEKRNLMNLLLLGALSLPTAGMLVPYGTFFVPPGSGGGSGGTPAKDALGNDVIAS 116
Query: 118 DWLNTHGPGDRTLTEGLKQDFSHL 141
+WL TH PG+RTLT+GLK D ++L
Sbjct: 117 EWLKTHPPGNRTLTQGLKGDPTYL 140
>sp|Q9SBN3|UCRIA_VOLCA Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Volvox carteri GN=petC PE=2 SV=1
Length = 206
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 33 PARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFF 92
P + Q ++ + ++ A S VPDM KR +MNL+LLG SLP G + + Y FF
Sbjct: 12 PCKAQATRRSRVMSVVRAAAVS---SEVPDMNKRNIMNLILLGGASLPVGSLALGYGAFF 68
Query: 93 APPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
PP G GG AKDA+GNDI A WL TH GDR+L++GLK D ++L
Sbjct: 69 VPPSSGGGSGGQAAKDALGNDIKANAWLATHQKGDRSLSQGLKGDPTYL 117
>sp|Q3AWL7|UCRI_SYNS9 Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain CC9902) GN=petC PE=3 SV=1
Length = 178
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 58/89 (65%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T IP+ VP MG+RQ MNLL G+V+ L P A +F PP +GGGTTAKD +GN
Sbjct: 2 TQIPSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVARYFIPPKAAGSGGGTTAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
+ A WL+TH GDR+L +GLK D ++L
Sbjct: 62 VVTATGWLSTHPEGDRSLVQGLKGDPTYL 90
>sp|A5GRU8|UCRI_SYNR3 Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain RCC307) GN=petC PE=3 SV=1
Length = 178
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 56/89 (62%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T I A VP MG+RQ MNLL G+V+ L P +F PP AGGGTTAKD +GN
Sbjct: 2 TQISAKDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPKASGAGGGTTAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
D+ A+ WL H GDR+L +GLK D ++L
Sbjct: 62 DVTASGWLADHKEGDRSLVQGLKGDPTYL 90
>sp|Q5CC93|UCRIA_CYAPA Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle
OS=Cyanophora paradoxa GN=petC-1 PE=2 SV=1
Length = 239
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 63/95 (66%), Gaps = 4/95 (4%)
Query: 48 IKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPP-GLGSAGGGTTA 106
+ C A S D VPDMGKR+LMNLLLLGA++ P P+ +F PP G AG G A
Sbjct: 59 VSCSAAS---DDVPDMGKRKLMNLLLLGAIAGPVAGAGGPFVSFLVPPKAGGGAGAGQAA 115
Query: 107 KDAIGNDIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
KDA+GND+ + WL TH PGDR+L +GLK D ++L
Sbjct: 116 KDALGNDVKVSSWLETHKPGDRSLAQGLKGDATYL 150
>sp|A5GMW1|UCRI_SYNPW Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain WH7803) GN=petC PE=3 SV=1
Length = 178
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 58/89 (65%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T +PA VP MG+RQ MNLL G+V+ L P +F PP +GGGT+AKD +GN
Sbjct: 2 TQMPAGDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPRAAGSGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
+ A+ WL+TH GDR+L +GLK D ++L
Sbjct: 62 AVTASGWLSTHPAGDRSLVQGLKGDPTYL 90
>sp|P49728|UCRIA_CHLRE Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Chlamydomonas reinhardtii GN=petC PE=1 SV=1
Length = 206
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
Query: 30 LVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYA 89
+ PA+ + ++ + ++ A S VPDM KR +MNL+L G LP + + Y
Sbjct: 9 VAAPAKASAIRRSRVMPVVRAAAAS---SEVPDMNKRNIMNLILAGGAGLPITTLALGYG 65
Query: 90 TFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
FF PP G GGG AKDA+GNDI A +WL TH GDR+L++GLK D ++L
Sbjct: 66 AFFVPPSSGGGGGGQAAKDALGNDIKAGEWLKTHLAGDRSLSQGLKGDPTYL 117
>sp|Q3ALY0|UCRI_SYNSC Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain CC9605) GN=petC PE=3 SV=1
Length = 178
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 58/89 (65%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + + VP MG+RQ MNLL G+V+ L P A +F PP +GGGT+AKD +GN
Sbjct: 2 TQLSSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPKAAGSGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
I A+ WL++H GDR+L +GLK D ++L
Sbjct: 62 PITASGWLSSHPEGDRSLVQGLKGDPTYL 90
>sp|P0C8N8|UCRI_THEEB Cytochrome b6-f complex iron-sulfur subunit OS=Thermosynechococcus
elongatus (strain BP-1) GN=petC PE=1 SV=1
Length = 180
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G ++ L P +F PP G GGG AKDA+GNDI +++
Sbjct: 10 VPDMGRRQFMNLLTFGTITGTALGALYPVVKYFIPPASGGTGGGAVAKDALGNDIKVSEY 69
Query: 120 LNTHGPGDRTLTEGLKQDFSHL 141
L H PGDR+L +G+K D +++
Sbjct: 70 LAKHLPGDRSLAQGIKGDPTYV 91
>sp|P0C8N7|UCRI_SYNEL Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus
elongatus GN=petC PE=3 SV=1
Length = 180
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G ++ L P +F PP G GGG AKDA+GNDI +++
Sbjct: 10 VPDMGRRQFMNLLTFGTITGTALGALYPVVKYFIPPASGGTGGGAVAKDALGNDIKVSEY 69
Query: 120 LNTHGPGDRTLTEGLKQDFSHL 141
L H PGDR+L +G+K D +++
Sbjct: 70 LAKHLPGDRSLAQGIKGDPTYV 91
>sp|Q7V654|UCRI_PROMM Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain MIT 9313) GN=petC PE=3 SV=2
Length = 178
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 55/89 (61%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + + VP MG+RQ MNLL G+V+ L P +F PP +GGGT+AKD +GN
Sbjct: 2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
+ A+ WL H GDR+L +GLK D ++L
Sbjct: 62 SVTASGWLANHSDGDRSLVQGLKGDPTYL 90
>sp|A2C7F6|UCRI_PROM3 Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain MIT 9303) GN=petC PE=3 SV=1
Length = 178
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 55/89 (61%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + + VP MG+RQ MNLL G+V+ L P +F PP +GGGT+AKD +GN
Sbjct: 2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
+ A+ WL H GDR+L +GLK D ++L
Sbjct: 62 SVTASGWLANHSDGDRSLVQGLKGDPTYL 90
>sp|Q0I872|UCRI_SYNS3 Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain CC9311) GN=petC PE=3 SV=1
Length = 178
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 58/89 (65%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T +PA VP MG+RQ MNLL G+V+ L P A +F PP GGGT+AKD +GN
Sbjct: 2 TQMPASDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPRAAGGGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
+ A+ WL++H GDR+L +GLK D ++L
Sbjct: 62 SVTASGWLSSHAEGDRSLVQGLKGDPTYL 90
>sp|B0JXB7|UCRI_MICAN Cytochrome b6-f complex iron-sulfur subunit OS=Microcystis
aeruginosa (strain NIES-843) GN=petC PE=3 SV=1
Length = 179
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPD+G+RQ MNLL G ++ L P +F PP G GGG TAKDA+GND+I + +
Sbjct: 9 VPDLGRRQFMNLLTFGTITGVAAGALYPIVKYFIPPSAGGTGGGVTAKDALGNDVIVSQF 68
Query: 120 LNTHGPGDRTLTEGLKQDFSHL 141
L +H GDRTL +GLK D ++L
Sbjct: 69 LTSHNAGDRTLAQGLKGDPTYL 90
>sp|Q5CC92|UCRIB_CYAPA Cytochrome b6-f complex iron-sulfur subunit 2, cyanelle
OS=Cyanophora paradoxa GN=petC-2 PE=2 SV=1
Length = 241
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 61/95 (64%), Gaps = 4/95 (4%)
Query: 48 IKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPP-GLGSAGGGTTA 106
I C A S D VPDMGKR+LMNLLLLGA++ PT P+ +F PP G AG G A
Sbjct: 61 ISCSAAS---DEVPDMGKRKLMNLLLLGAIAGPTIGAGGPFVSFLVPPKSGGGAGAGQAA 117
Query: 107 KDAIGNDIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
KDA GNDI WL T PGDR+L +GLK D ++L
Sbjct: 118 KDAAGNDIKVEKWLETXKPGDRSLAQGLKGDATYL 152
>sp|Q114L6|UCRI_TRIEI Cytochrome b6-f complex iron-sulfur subunit OS=Trichodesmium
erythraeum (strain IMS101) GN=petC PE=3 SV=1
Length = 179
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 51 QATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAI 110
QA P VP MG+RQ MNLL G V+ L P +F PP G +GGG TAKDA+
Sbjct: 3 QAEGTP--DVPSMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPSSGGSGGGVTAKDAL 60
Query: 111 GNDIIAADWLNTHGPGDRTLTEGLKQDFSHLQL 143
GNDII +++L H G+RTL +GLK D +++ +
Sbjct: 61 GNDIIVSEFLANHNSGERTLAQGLKGDPTYVVI 93
>sp|P26292|UCRI_SYNP2 Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=petC PE=3 SV=1
Length = 180
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 55/82 (67%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPD+G+RQ +NLL +G + L P +F PP G AGGG AKDA+GNDII +D+
Sbjct: 10 VPDLGRRQFLNLLWVGTAAGTALGGLYPVIKYFIPPSSGGAGGGVIAKDALGNDIIVSDY 69
Query: 120 LNTHGPGDRTLTEGLKQDFSHL 141
L TH GDR+L +GLK D +++
Sbjct: 70 LQTHTAGDRSLAQGLKGDPTYV 91
>sp|Q5N5B0|UCRI_SYNP6 Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petC
PE=3 SV=1
Length = 179
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 54/85 (63%)
Query: 57 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIA 116
A VP MG+RQ MNLL G+V+ L P +F PP G +GGG AKDA+GND++
Sbjct: 7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVL 66
Query: 117 ADWLNTHGPGDRTLTEGLKQDFSHL 141
+ +L H GDRTL +GLK D ++L
Sbjct: 67 SKFLADHNVGDRTLVQGLKGDPTYL 91
>sp|Q31NV7|UCRI_SYNE7 Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus
elongatus (strain PCC 7942) GN=petC PE=3 SV=1
Length = 179
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 54/85 (63%)
Query: 57 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIA 116
A VP MG+RQ MNLL G+V+ L P +F PP G +GGG AKDA+GND++
Sbjct: 7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVL 66
Query: 117 ADWLNTHGPGDRTLTEGLKQDFSHL 141
+ +L H GDRTL +GLK D ++L
Sbjct: 67 SKFLADHNVGDRTLVQGLKGDPTYL 91
>sp|Q46GW1|UCRI_PROMT Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain NATL2A) GN=petC PE=3 SV=1
Length = 178
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 53/82 (64%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VP MG+RQ MNLL G V+ L P A +F P G GGGT AKD +GN++ A+ W
Sbjct: 9 VPSMGRRQFMNLLTFGTVTGVALGALYPVAQYFTPYRAGGGGGGTNAKDELGNNVSASGW 68
Query: 120 LNTHGPGDRTLTEGLKQDFSHL 141
L+TH GDR+L +GLK D ++L
Sbjct: 69 LSTHPVGDRSLVQGLKGDPTYL 90
>sp|A2C0R9|UCRI_PROM1 Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain NATL1A) GN=petC PE=3 SV=1
Length = 178
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 53/82 (64%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VP MG+RQ MNLL G V+ L P A +F P G GGGT AKD +GN++ A+ W
Sbjct: 9 VPSMGRRQFMNLLTFGTVTGVALGALYPVAQYFTPYRAGGGGGGTNAKDELGNNVSASGW 68
Query: 120 LNTHGPGDRTLTEGLKQDFSHL 141
L+TH GDR+L +GLK D ++L
Sbjct: 69 LSTHPVGDRSLVQGLKGDPTYL 90
>sp|Q93SX0|UCRIA_NOSS1 Cytochrome b6-f complex iron-sulfur subunit 1 OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=petC1 PE=1 SV=1
Length = 179
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 54/82 (65%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G V+ L P +F PP G AGGGTTAKD +GND+ + +
Sbjct: 10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPAAGGAGGGTTAKDELGNDVSVSKF 69
Query: 120 LNTHGPGDRTLTEGLKQDFSHL 141
L +H GDRTL +GLK D +++
Sbjct: 70 LESHNVGDRTLVQGLKGDPTYI 91
>sp|Q9L3P9|UCRIA_ANAVT Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=petC PE=3
SV=1
Length = 179
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 54/82 (65%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G V+ L P +F PP G AGGGTTAKD +GND+ + +
Sbjct: 10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPATGGAGGGTTAKDELGNDVSVSKF 69
Query: 120 LNTHGPGDRTLTEGLKQDFSHL 141
L +H GDRTL +GLK D +++
Sbjct: 70 LESHNVGDRTLVQGLKGDPTYI 91
>sp|B8HNR1|UCRI_CYAP4 Cytochrome b6-f complex iron-sulfur subunit OS=Cyanothece sp.
(strain PCC 7425 / ATCC 29141) GN=petC PE=3 SV=1
Length = 179
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G+ + ML P +F PP G GGG AKDA+GNDI +D+
Sbjct: 10 VPDMGRRQFMNLLTFGSATGVALGMLYPVVRYFIPPASGGVGGGVVAKDALGNDISVSDF 69
Query: 120 LNTHGPGDRTLTEGLKQDFSHL 141
L H DR L +GLK D +++
Sbjct: 70 LAKHPANDRALAQGLKGDPTYI 91
>sp|Q7U566|UCRI_SYNPX Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain WH8102) GN=petC PE=3 SV=1
Length = 178
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 56/89 (62%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + + VP MG+RQ MNLL G+V+ L P +F PP AGGGTTAKD +GN
Sbjct: 2 TQLSSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPRAAGAGGGTTAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
I A WL++H GDR+L +GLK D ++L
Sbjct: 62 AITATGWLSSHPEGDRSLVQGLKGDPTYL 90
>sp|P26290|UCRIB_SYNY3 Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=petC2 PE=3 SV=2
Length = 180
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPD+G+RQ MNLL G ++ L P + PP G +GGG TAKDA+GND+ ++
Sbjct: 10 VPDLGRRQFMNLLTFGTITGVAAGALYPAVKYLIPPSSGGSGGGVTAKDALGNDVKVTEF 69
Query: 120 LNTHGPGDRTLTEGLKQDFSHL 141
L +H GDR L +GLK D +++
Sbjct: 70 LASHNAGDRVLAQGLKGDPTYI 91
>sp|A3PBI5|UCRI_PROM0 Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain MIT 9301) GN=petC PE=3 SV=1
Length = 178
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 53/89 (59%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + ++ VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN
Sbjct: 2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
I WL TH GDR+L +GLK D ++L
Sbjct: 62 PITKTGWLATHQAGDRSLVQGLKGDPTYL 90
>sp|A2BPU5|UCRI_PROMS Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain AS9601) GN=petC PE=3 SV=1
Length = 178
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 53/89 (59%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + ++ VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN
Sbjct: 2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
I WL TH GDR+L +GLK D ++L
Sbjct: 62 PITKTGWLATHQAGDRSLVQGLKGDPTYL 90
>sp|A9BE84|UCRI_PROM4 Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain MIT 9211) GN=petC PE=3 SV=1
Length = 178
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 56 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDII 115
P+D VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN I
Sbjct: 6 PSD-VPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPIT 64
Query: 116 AADWLNTHGPGDRTLTEGLKQDFSHL 141
A+ WL+ H GDR+L +GLK D ++L
Sbjct: 65 ASGWLSNHPAGDRSLVQGLKGDPTYL 90
>sp|Q31C72|UCRI_PROM9 Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain MIT 9312) GN=petC PE=3 SV=1
Length = 178
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 53/89 (59%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + ++ VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN
Sbjct: 2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
+ WL TH GDR+L +GLK D ++L
Sbjct: 62 PVTKTGWLATHQAGDRSLVQGLKGDPTYL 90
>sp|A8G3H7|UCRI_PROM2 Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain MIT 9215) GN=petC PE=3 SV=1
Length = 178
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 52/89 (58%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + + VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN
Sbjct: 2 TQLSSKDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
I WL TH GDR+L +GLK D ++L
Sbjct: 62 PITKTGWLATHQAGDRSLVQGLKGDPTYL 90
>sp|Q7V2L4|UCRI_PROMP Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC
PE=3 SV=1
Length = 178
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + ++ VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN
Sbjct: 2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
+ WL +H GDR+L +GLK D ++L
Sbjct: 62 PVTKTGWLASHQAGDRSLVQGLKGDPTYL 90
>sp|A2BVC4|UCRI_PROM5 Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain MIT 9515) GN=petC PE=3 SV=1
Length = 178
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + ++ VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN
Sbjct: 2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLKQDFSHL 141
+ WL H GDR+L +GLK D ++L
Sbjct: 62 PVTKTGWLANHQAGDRSLVQGLKGDPTYL 90
>sp|P83794|UCRI_MASLA Cytochrome b6-f complex iron-sulfur subunit OS=Mastigocladus
laminosus GN=petC PE=1 SV=2
Length = 179
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G V+ L P +F PP G+ GGGTTAKD +GN++ + +
Sbjct: 10 VPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKF 69
Query: 120 LNTHGPGDRTLTEGLKQDFSHL 141
L +H GDR L +GLK D +++
Sbjct: 70 LESHNAGDRVLVQGLKGDPTYI 91
>sp|Q7VDC0|UCRI_PROMA Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) GN=petC PE=3
SV=1
Length = 178
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 56 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDII 115
P+D VP MG+RQ MNLL G + L P A FF P G GGTTAKD +GN +
Sbjct: 6 PSD-VPSMGRRQFMNLLTFGTATGVALGALYPVANFFMPLRAGGGTGGTTAKDELGNAVT 64
Query: 116 AADWLNTHGPGDRTLTEGLKQDFSHL 141
A WL+ H GDR+L +GLK D ++L
Sbjct: 65 ATGWLSNHPAGDRSLVQGLKGDPTYL 90
>sp|B2J3K2|UCRI_NOSP7 Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=petC PE=3 SV=1
Length = 179
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 50/82 (60%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G V+ L P +F PP G AGGGTTAKD +GND+ +
Sbjct: 10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPATGGAGGGTTAKDELGNDVSVTKF 69
Query: 120 LNTHGPGDRTLTEGLKQDFSHL 141
L GDR L +GLK D +++
Sbjct: 70 LENRNAGDRNLVQGLKGDPTYI 91
>sp|P14698|UCRI_NOSSP Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc sp. (strain
PCC 7906) GN=petC PE=3 SV=1
Length = 179
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G V+ L P +F PP G AGGGTTAKD +GND+ + +
Sbjct: 10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVKYFIPPASGGAGGGTTAKDELGNDVSLSKF 69
Query: 120 LNTHGPGDRTLTEGLKQDFSHL 141
L GDR L +GLK D +++
Sbjct: 70 LENRNAGDRALVQGLKGDPTYI 91
>sp|Q2JUP1|UCRI_SYNJA Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain JA-3-3Ab) GN=petC PE=3 SV=1
Length = 172
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 59 RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAAD 118
P M +R +N LL +V + L P +F PP G AG G A+DA+G I ++
Sbjct: 9 EAPPMSRRVFLNALLSSSVGVVVVGTLYPVVKYFIPPSSGGAGEGVIAQDALGKPISVSE 68
Query: 119 WLNTHGPGDRTLTEGLKQDFSHLQL 143
L TH DR L +GLK D +++ +
Sbjct: 69 LLATHAATDRVLAQGLKGDPTYIVI 93
>sp|Q2JL39|UCRI_SYNJB Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=petC PE=3 SV=1
Length = 172
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%)
Query: 59 RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAAD 118
P M +R L+N LL G+V + L P +F PP G G G A+DA+G I ++
Sbjct: 9 EAPPMSRRVLLNALLSGSVGVVVVGALYPVVKYFIPPSAGGGGEGLIAQDALGKPISVSE 68
Query: 119 WLNTHGPGDRTLTEGLKQDFSHLQL 143
L TH DR L +GLK D +++ +
Sbjct: 69 LLATHAATDRVLAQGLKGDPTYIVI 93
>sp|Q7XYM4|UCRIA_BIGNA Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Bigelowiella natans GN=petC PE=2 SV=1
Length = 252
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 14 QLCSSKGGMFCPSRAFLVKPARTQMVTKNPM---GMKIKCQATSIPADRVPDMGKRQLMN 70
QL + +G + P +F +R V++N + K QA D VPDMGKR+LMN
Sbjct: 36 QLSAVRGKIAAPRTSFQNAVSR---VSRNQLPSSSRKAVAQAFLSNPDMVPDMGKRKLMN 92
Query: 71 LLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTL 130
L+L AV+ Y +F PP G GG A DA+GN + A W +H R L
Sbjct: 93 NLVLAAVAPVVASAGGCYLYYFYPPQTGGGGGAVGALDALGNPVSAESWFKSHKKNARDL 152
Query: 131 TEGLKQDFSHL 141
+G+K D ++L
Sbjct: 153 VQGIKGDPTYL 163
>sp|Q7NCE1|UCRI_GLOVI Cytochrome b6-f complex iron-sulfur subunit OS=Gloeobacter
violaceus (strain PCC 7421) GN=petC PE=3 SV=1
Length = 186
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 57 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIA 116
A +P M +RQL++ + GA++ T L P +F PP G G AKD G DI
Sbjct: 6 AQEIP-MSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPSTAGGGEGVAAKDKEGKDISV 64
Query: 117 ADWLNTHGPGDRTLTEGL 134
+ L PG+ LT GL
Sbjct: 65 SKLLAAATPGEPVLTLGL 82
>sp|Q93SW8|UCRIB_NOSS1 Cytochrome b6-f complex iron-sulfur subunit 2 OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=petC2 PE=3 SV=1
Length = 178
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 61 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADW 119
P M +RQL+N V+ + P FF PP + A GG A+D IG+ I A+
Sbjct: 10 PSMSRRQLLNFFTGAIVATTASAAIYPATKFFMPPAESTDAEGGILAQDKIGHPIPASQI 69
Query: 120 LNTHGPGDRTLTEGLKQDFSHLQL 143
L G R L GL + ++L +
Sbjct: 70 L-AQASGTRALIAGLAGEPTYLTV 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,062,580
Number of Sequences: 539616
Number of extensions: 2213654
Number of successful extensions: 5010
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4940
Number of HSP's gapped (non-prelim): 61
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)