Query 032198
Match_columns 145
No_of_seqs 86 out of 88
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 17:41:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q90_R Cytochrome B6-F complex 99.8 3.9E-23 1.3E-27 135.7 -1.5 48 56-103 2-49 (49)
2 1vf5_D Rieske iron-sulfur prot 99.7 1.5E-18 5.1E-23 132.3 -3.6 91 53-143 3-93 (179)
3 1rfs_A Rieske protein; iron-su 98.6 1.4E-08 4.7E-13 75.1 1.8 52 92-143 1-52 (139)
4 3azc_A Cytochrome B6-F complex 97.4 4.4E-07 1.5E-11 67.5 0.0 43 101-143 4-46 (133)
5 2qjy_C Ubiquinol-cytochrome C 97.5 8.9E-06 3E-10 62.8 -1.2 43 60-102 6-48 (187)
6 3cx5_E Cytochrome B-C1 complex 97.0 0.00011 3.7E-09 56.7 0.2 73 60-142 17-89 (185)
7 1pp9_E Ubiquinol-cytochrome C 90.6 0.0083 2.8E-07 46.8 -4.3 35 60-94 27-64 (196)
8 2pq4_B Periplasmic nitrate red 54.2 4.6 0.00016 24.1 1.1 17 62-78 2-18 (35)
9 4aay_B AROB; oxidoreductase, r 51.3 3.2 0.00011 31.6 0.0 32 62-95 9-40 (175)
10 3ner_A Cytochrome B5 type B; h 37.5 11 0.00036 25.9 0.9 29 111-139 32-60 (92)
11 2ibj_A Cytochrome B5, CYTB5; F 34.7 9.4 0.00032 25.6 0.3 29 111-139 29-57 (88)
12 1cyo_A Cytochrome B5; electron 34.4 10 0.00035 26.0 0.4 29 111-139 27-55 (93)
13 1cxy_A Cytochrome B5; helix, b 33.9 15 0.0005 24.9 1.2 29 111-139 30-58 (90)
14 1p5s_A RAS GTPase-activating-l 31.4 10 0.00034 29.6 0.0 15 94-108 2-16 (203)
15 1x3x_A Cytochrome B5; hemoprot 31.0 18 0.00063 23.9 1.2 28 111-139 26-53 (82)
16 1hko_A Cytochrome B5; electron 29.8 11 0.00039 26.5 0.0 29 111-139 31-59 (104)
17 1mj4_A Sulfite oxidase; cytoch 25.9 18 0.0006 24.0 0.5 22 111-132 28-49 (82)
18 3lf5_A Cytochrome B5 reductase 24.8 13 0.00046 25.2 -0.3 30 110-139 27-56 (88)
19 2keo_A Probable E3 ubiquitin-p 23.9 18 0.00062 25.9 0.2 28 59-86 22-49 (112)
20 2w0y_A APH, alkaline phosphata 23.3 17 0.00059 32.2 0.0 22 58-79 7-28 (473)
21 3hzp_A NTF2-like protein of un 20.8 33 0.0011 26.2 1.1 28 106-133 35-62 (131)
No 1
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=99.84 E-value=3.9e-23 Score=135.73 Aligned_cols=48 Identities=46% Similarity=0.921 Sum_probs=38.2
Q ss_pred CCCCCCCcchHHHHHHHHhhhcccccceecceeEEEeecCCCCCCCCc
Q 032198 56 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGG 103 (145)
Q Consensus 56 ~~~~vPdM~RRqlMNlL~~Gav~~~a~g~lyP~~~fFvPP~~gG~gGG 103 (145)
++++||||+||||||+|++|+++.++++++|||++||+||+++|+|||
T Consensus 2 ~~~~~pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP~~gg~ggg 49 (49)
T 1q90_R 2 ASSEVPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPSSGGGGGG 49 (49)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred CcccCCChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCCccCCCCCC
Confidence 467999999999999999999999999999999999999999998886
No 2
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.66 E-value=1.5e-18 Score=132.32 Aligned_cols=91 Identities=43% Similarity=0.711 Sum_probs=78.4
Q ss_pred ccCCCCCCCCcchHHHHHHHHhhhcccccceecceeEEEeecCCCCCCCCccccccccCCcchhhhhhccCCCCChhhhc
Q 032198 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTE 132 (145)
Q Consensus 53 ~s~~~~~vPdM~RRqlMNlL~~Gav~~~a~g~lyP~~~fFvPP~~gG~gGGv~AKDalGNdI~as~wL~th~pGdR~Lvq 132 (145)
.+.+.+++|||+||+|||++++|++++.++++++|++.||.||.....+++.+++|..|++|.+++|+.+.++|++.+++
T Consensus 3 ~~~~~~~~~~~~RR~Fl~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~v~~d~~g~~i~~~~~~~~l~~g~~~~~~ 82 (179)
T 1vf5_D 3 QFTESMDVPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQ 82 (179)
T ss_dssp ---------CCCCCTTSCTTHHHHHHHHHHHHHHHHHHHHSCCCCSSCCCCCCCCBTTSSCCCHHHHHHCCCTTCCCEES
T ss_pred cccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCCcEEEccCCCeEehhhcccccCCCceEEEe
Confidence 45666789999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred ccCCCceeEEE
Q 032198 133 GLKQDFSHLQL 143 (145)
Q Consensus 133 GLKGDpTYLiV 143 (145)
+++|+|.|++.
T Consensus 83 ~~~g~~~~lv~ 93 (179)
T 1vf5_D 83 GLKGDPTYIVV 93 (179)
T ss_dssp CSSSSCEECCB
T ss_pred ccCCCeEEEEE
Confidence 99999998865
No 3
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=98.58 E-value=1.4e-08 Score=75.05 Aligned_cols=52 Identities=65% Similarity=1.098 Sum_probs=36.6
Q ss_pred eecCCCCCCCCccccccccCCcchhhhhhccCCCCChhhhcccCCCceeEEE
Q 032198 92 FAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKQDFSHLQL 143 (145)
Q Consensus 92 FvPP~~gG~gGGv~AKDalGNdI~as~wL~th~pGdR~LvqGLKGDpTYLiV 143 (145)
|+||+++++|||+.|+|+.||.|.+++|+++-++|.+..+.++.|++.+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~ 52 (139)
T 1rfs_A 1 FVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVV 52 (139)
T ss_dssp ------------CBCBCTTSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEB
T ss_pred CcCCccCcccceEEeecCCCCEEEeehhHhhCCCCccEEEEecCCCeEEEEE
Confidence 8999999999999999999999999999999999999888888888877764
No 4
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=97.36 E-value=4.4e-07 Score=67.50 Aligned_cols=43 Identities=44% Similarity=0.746 Sum_probs=40.2
Q ss_pred CCccccccccCCcchhhhhhccCCCCChhhhcccCCCceeEEE
Q 032198 101 GGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKQDFSHLQL 143 (145)
Q Consensus 101 gGGv~AKDalGNdI~as~wL~th~pGdR~LvqGLKGDpTYLiV 143 (145)
|||++|||+.||+|++++||+..++|++.+++.|-|++..+++
T Consensus 4 ~~~~~~~~~~g~~v~~~~~~~~l~~g~~~~v~~l~g~~~vlv~ 46 (133)
T 3azc_A 4 EGRAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIV 46 (133)
Confidence 6899999999999999999999999999999999999887765
No 5
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=97.50 E-value=8.9e-06 Score=62.81 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=36.3
Q ss_pred CCCcchHHHHHHHHhhhcccccceecceeEEEeecCCCCCCCC
Q 032198 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGG 102 (145)
Q Consensus 60 vPdM~RRqlMNlL~~Gav~~~a~g~lyP~~~fFvPP~~gG~gG 102 (145)
..||+||+||++++.++.++.++++++|++.|+.|+....+.+
T Consensus 6 ~~~~~RR~Fl~~~~~~~~~~~a~~~~~p~v~~~~p~~~~~a~~ 48 (187)
T 2qjy_C 6 DHAGTRRDFLYYATAGAGAVATGAAVWPLINQMNPSADVQALA 48 (187)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTTSCCC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccc
Confidence 4589999999999999999999999999999999998876554
No 6
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=97.02 E-value=0.00011 Score=56.74 Aligned_cols=73 Identities=10% Similarity=0.005 Sum_probs=47.2
Q ss_pred CCCcchHHHHHHHHhhhcccccceecceeEEEeecCCCCCCCCccccccccCCcchhhhhhccCCCCChhhhcccCCCce
Q 032198 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKQDFS 139 (145)
Q Consensus 60 vPdM~RRqlMNlL~~Gav~~~a~g~lyP~~~fFvPP~~gG~gGGv~AKDalGNdI~as~wL~th~pGdR~LvqGLKGDpT 139 (145)
..+|+||+||++++.++.++.++++++++..|+.+.... ..+.| ...|.+. +.+-++|+...++ +.|.|.
T Consensus 17 ~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~a----~~~v~V~--~s~l~~G~~~~v~-~~g~pv 86 (185)
T 3cx5_E 17 NDADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTAT---ADVLA----MAKVEVN--LAAIPLGKNVVVK-WQGKPV 86 (185)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC---GGGCC----CCCEEEE--GGGCCTTCEEEEE-ETTEEE
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCC---cchhc----cCcEEEE--HHHCCCCCeEEEE-ECCeEE
Confidence 468999999999999888887778777777777665332 22333 2234441 5555677765554 456665
Q ss_pred eEE
Q 032198 140 HLQ 142 (145)
Q Consensus 140 YLi 142 (145)
+++
T Consensus 87 ~v~ 89 (185)
T 3cx5_E 87 FIR 89 (185)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 7
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=90.63 E-value=0.0083 Score=46.83 Aligned_cols=35 Identities=3% Similarity=-0.004 Sum_probs=24.7
Q ss_pred CCCcchHHHHHHHHhhhcccccc---eecceeEEEeec
Q 032198 60 VPDMGKRQLMNLLLLGAVSLPTG---FMLVPYATFFAP 94 (145)
Q Consensus 60 vPdM~RRqlMNlL~~Gav~~~a~---g~lyP~~~fFvP 94 (145)
-.|++||.||+++++++.++.++ .+++|++.++-|
T Consensus 27 ~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p 64 (196)
T 1pp9_E 27 ESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSA 64 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 34789999999998776654444 356777776655
No 8
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=54.21 E-value=4.6 Score=24.13 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhhhcc
Q 032198 62 DMGKRQLMNLLLLGAVS 78 (145)
Q Consensus 62 dM~RRqlMNlL~~Gav~ 78 (145)
.|+||+||..-..++++
T Consensus 2 ~lsRR~FLK~~aaa~Aa 18 (35)
T 2pq4_B 2 KLSRRSFMKANAVAAAA 18 (35)
T ss_dssp CCCSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 48899999965544443
No 9
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=51.25 E-value=3.2 Score=31.64 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHhhhcccccceecceeEEEeecC
Q 032198 62 DMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPP 95 (145)
Q Consensus 62 dM~RRqlMNlL~~Gav~~~a~g~lyP~~~fFvPP 95 (145)
.++|||||- +.++++..++...+|...+..++
T Consensus 9 ~~~rr~fl~--~~~~a~~~~~~~~~~~~~~~~~~ 40 (175)
T 4aay_B 9 DIGRRQFLR--GGALAAAGATAAVFGVGAPQARA 40 (175)
T ss_dssp ----------------------------------
T ss_pred cccHHHHhh--hhHHhhhheeEeccccccccccc
Confidence 799999999 33333333333335555555544
No 10
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=37.50 E-value=11 Score=25.94 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=19.0
Q ss_pred CCcchhhhhhccCCCCChhhhcccCCCce
Q 032198 111 GNDIIAADWLNTHGPGDRTLTEGLKQDFS 139 (145)
Q Consensus 111 GNdI~as~wL~th~pGdR~LvqGLKGDpT 139 (145)
|+...+++|+..||-|...|.+---.|.|
T Consensus 32 g~VYDvT~f~~~HPGG~~~l~~~aG~DaT 60 (92)
T 3ner_A 32 GRVYDVTRFLNEHPGGEEVLLEQAGVDAS 60 (92)
T ss_dssp TEEEECGGGTTTCTTCSHHHHTTTTSBCH
T ss_pred CEEEEcccccccCCCHHHHHHHhcCCcch
Confidence 55666778888888777666554444554
No 11
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=34.71 E-value=9.4 Score=25.60 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=19.0
Q ss_pred CCcchhhhhhccCCCCChhhhcccCCCce
Q 032198 111 GNDIIAADWLNTHGPGDRTLTEGLKQDFS 139 (145)
Q Consensus 111 GNdI~as~wL~th~pGdR~LvqGLKGDpT 139 (145)
|+...+++|+..||-|...|.+---.|.|
T Consensus 29 g~VYDvT~f~~~HPGG~~~i~~~aG~DaT 57 (88)
T 2ibj_A 29 NNVYDVTAFLNEHPGGEEVLIEQAGKDAT 57 (88)
T ss_dssp TEEEECGGGTTTCTTCSHHHHTTTTEECH
T ss_pred CEEEECCcchhhCcCHHHHHHHhCCCcch
Confidence 55667788888888887666543333444
No 12
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=34.41 E-value=10 Score=25.95 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=19.8
Q ss_pred CCcchhhhhhccCCCCChhhhcccCCCce
Q 032198 111 GNDIIAADWLNTHGPGDRTLTEGLKQDFS 139 (145)
Q Consensus 111 GNdI~as~wL~th~pGdR~LvqGLKGDpT 139 (145)
|+...+++|+..||-|...|.+---.|.|
T Consensus 27 g~VYDvT~f~~~HPGG~~~i~~~aG~DaT 55 (93)
T 1cyo_A 27 YKVYDLTKFLEEHPGGEEVLREQAGGDAT 55 (93)
T ss_dssp TEEEECTTTTTTCTTCSHHHHHHTTSBCH
T ss_pred CEEEECCCcchhCcChHHHHHHhcCccch
Confidence 55667788888888887777554444554
No 13
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=33.92 E-value=15 Score=24.87 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=18.6
Q ss_pred CCcchhhhhhccCCCCChhhhcccCCCce
Q 032198 111 GNDIIAADWLNTHGPGDRTLTEGLKQDFS 139 (145)
Q Consensus 111 GNdI~as~wL~th~pGdR~LvqGLKGDpT 139 (145)
|+.-.+++|+..||-|...|.+---.|.|
T Consensus 30 g~VYDvT~f~~~HPGG~~~i~~~aG~DaT 58 (90)
T 1cxy_A 30 GKVYDLTPYVPNHPGPAGMMLVWCGQEST 58 (90)
T ss_dssp TEEEECTTTGGGCCSSTTTTGGGTTSBCH
T ss_pred CEEEECccchhhCcChHHHHHHHCCcchh
Confidence 55566778888887777666554444544
No 14
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=31.39 E-value=10 Score=29.61 Aligned_cols=15 Identities=33% Similarity=0.745 Sum_probs=0.0
Q ss_pred cCCCCCCCCcccccc
Q 032198 94 PPGLGSAGGGTTAKD 108 (145)
Q Consensus 94 PP~~gG~gGGv~AKD 108 (145)
||++.||||||.+.-
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (203)
T 1p5s_A 2 SPGISGGGGGILMDV 16 (203)
T ss_dssp ---------------
T ss_pred CCCcCCCCCceeeec
Confidence 788889999998754
No 15
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=30.96 E-value=18 Score=23.91 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=19.0
Q ss_pred CCcchhhhhhccCCCCChhhhcccCCCce
Q 032198 111 GNDIIAADWLNTHGPGDRTLTEGLKQDFS 139 (145)
Q Consensus 111 GNdI~as~wL~th~pGdR~LvqGLKGDpT 139 (145)
|+.-.+++|+..||-| ..|.+---.|.|
T Consensus 26 g~VYDvT~f~~~HPGG-~~i~~~aG~D~T 53 (82)
T 1x3x_A 26 GEVHDMTSFYKEHPGG-KVILNKAGQDAT 53 (82)
T ss_dssp TEEEECGGGGGGCTTG-GGGGGGTTSBCH
T ss_pred CEEEECCcchhhCcCh-hhhhhhCCCCCc
Confidence 5566778899888888 666554444554
No 16
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=29.84 E-value=11 Score=26.47 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=20.0
Q ss_pred CCcchhhhhhccCCCCChhhhcccCCCce
Q 032198 111 GNDIIAADWLNTHGPGDRTLTEGLKQDFS 139 (145)
Q Consensus 111 GNdI~as~wL~th~pGdR~LvqGLKGDpT 139 (145)
|+...+++|+..||-|...|.+---.|.|
T Consensus 31 g~VYDvT~f~~~HPGG~~~i~~~aGkDaT 59 (104)
T 1hko_A 31 YKVYDLTKFLEEHPGGEEVLREQAGGDAT 59 (104)
T ss_dssp TEEEEHHHHSSSSSSCSHHHHTTCSEECH
T ss_pred CEEEECCcchhhCcChHHHHHHhcCccch
Confidence 56667888988888887777554334544
No 17
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=25.94 E-value=18 Score=24.05 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=15.3
Q ss_pred CCcchhhhhhccCCCCChhhhc
Q 032198 111 GNDIIAADWLNTHGPGDRTLTE 132 (145)
Q Consensus 111 GNdI~as~wL~th~pGdR~Lvq 132 (145)
|+.-.+++|+..||-|...|.+
T Consensus 28 g~VYDvt~f~~~HPGG~~~il~ 49 (82)
T 1mj4_A 28 SEVFDVTEFVDLHPGGPSKLML 49 (82)
T ss_dssp TEEEECTTTGGGSTTCHHHHHT
T ss_pred CEEEEchHHHHhCCCHhHHHHH
Confidence 5556677888888888555544
No 18
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=24.81 E-value=13 Score=25.23 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=18.9
Q ss_pred cCCcchhhhhhccCCCCChhhhcccCCCce
Q 032198 110 IGNDIIAADWLNTHGPGDRTLTEGLKQDFS 139 (145)
Q Consensus 110 lGNdI~as~wL~th~pGdR~LvqGLKGDpT 139 (145)
.|+...+++|+..||-|...|.+---.|.|
T Consensus 27 ~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT 56 (88)
T 3lf5_A 27 RGFVYNVSPYMEYHPGGEDELMRAAGSDGT 56 (88)
T ss_dssp TTEEEECGGGTTTCTTCHHHHHTTTTEECH
T ss_pred CCEEEECccchhhCcChhhhhhhcCCCcch
Confidence 356667788888888777665543333444
No 19
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=23.89 E-value=18 Score=25.94 Aligned_cols=28 Identities=14% Similarity=-0.125 Sum_probs=14.1
Q ss_pred CCCCcchHHHHHHHHhhhcccccceecc
Q 032198 59 RVPDMGKRQLMNLLLLGAVSLPTGFMLV 86 (145)
Q Consensus 59 ~vPdM~RRqlMNlL~~Gav~~~a~g~ly 86 (145)
+.+.+.+.++-+--.-+-.=+.+-|-.|
T Consensus 22 ~~~~~t~~Ev~~h~~~~d~wvvi~G~VY 49 (112)
T 2keo_A 22 KVTLVRIADLENHNNDGGFWTVIDGKVY 49 (112)
T ss_dssp CCCEECHHHHHHHHHHTCCEEEETTEEE
T ss_pred CCCccCHHHHHHhcCCCCEEEEECCEEE
Confidence 4566777777665543333333333333
No 20
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A {Halobacterium salinarum R1} PDB: 2x98_A
Probab=23.32 E-value=17 Score=32.19 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCCCcchHHHHHHHHhhhccc
Q 032198 58 DRVPDMGKRQLMNLLLLGAVSL 79 (145)
Q Consensus 58 ~~vPdM~RRqlMNlL~~Gav~~ 79 (145)
-+.|+|.||.|+--..++++..
T Consensus 7 ~~~~~~~rr~~~~~~~~~~~~~ 28 (473)
T 2w0y_A 7 TESPSVDRRTFLAGLSGAVAGG 28 (473)
T ss_dssp ----------------------
T ss_pred CCCCCchHHHHhcccchhhhcc
Confidence 3689999999997666444433
No 21
>3hzp_A NTF2-like protein of unknown function; YP_291699.1, structural genomics, joint center structural genomics, JCSG; HET: MSE 1PE; 1.40A {Prochlorococcus marinus}
Probab=20.79 E-value=33 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=23.2
Q ss_pred cccccCCcchhhhhhccCCCCChhhhcc
Q 032198 106 AKDAIGNDIIAADWLNTHGPGDRTLTEG 133 (145)
Q Consensus 106 AKDalGNdI~as~wL~th~pGdR~LvqG 133 (145)
+-.--||+|+++.+++.|.-||-....+
T Consensus 35 FIrPsGnpItkegd~~m~~Sgdlv~e~~ 62 (131)
T 3hzp_A 35 FIRPSGNPLDAKGFENMWSSGDLVLESA 62 (131)
T ss_dssp EECTTSCEECHHHHHHHHTSSSEEEEEE
T ss_pred EEcCCCCccchhhhHHhhcCCCEEEEee
Confidence 4455699999999999999999776664
Done!