BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032199
(145 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297845042|ref|XP_002890402.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
gi|297336244|gb|EFH66661.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
Length = 141
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/144 (75%), Positives = 128/144 (88%), Gaps = 8/144 (5%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK++TRNAKLSV KKPAK G+ AAKDPNKPKRP+SAFFVFME+FRE YKK+H
Sbjct: 3 MKGGKSKTETRNAKLSVTKKPAKGGKG---AAKDPNKPKRPSSAFFVFMEDFRETYKKEH 59
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEES 117
PKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN++ P+E+EES
Sbjct: 60 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEES 119
Query: 118 EKSMSEVNDEDDDEEGSGEVFFWG 141
+KS+SEVNDEDD E+GS EV WG
Sbjct: 120 DKSVSEVNDEDDAEDGSEEV--WG 141
>gi|8886929|gb|AAF80615.1|AC069251_8 F2D10.18 [Arabidopsis thaliana]
Length = 662
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 99/140 (70%), Positives = 122/140 (87%), Gaps = 3/140 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 378 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 437
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEES 117
PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN++ P+E+EES
Sbjct: 438 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEES 497
Query: 118 EKSMSEVNDEDDDEEGSGEV 137
+KS+SEVNDEDD E+GS EV
Sbjct: 498 DKSVSEVNDEDDAEDGSEEV 517
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 112/128 (87%), Gaps = 6/128 (4%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 522 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 578
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEES 117
PKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN++ P+E+EES
Sbjct: 579 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEES 638
Query: 118 EKSMSEVN 125
+KS+SEVN
Sbjct: 639 DKSVSEVN 646
>gi|145323962|ref|NP_001077570.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191890|gb|AEE30011.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 140
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/140 (72%), Positives = 122/140 (87%), Gaps = 6/140 (4%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEES 117
PKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN++ P+E+EES
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEES 117
Query: 118 EKSMSEVNDEDDDEEGSGEV 137
+KS+SEVNDEDD E+GS EV
Sbjct: 118 DKSVSEVNDEDDAEDGSEEV 137
>gi|79318286|ref|NP_001031074.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|297845040|ref|XP_002890401.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|297336243|gb|EFH66660.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|332191886|gb|AEE30007.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 142
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/139 (70%), Positives = 121/139 (87%), Gaps = 3/139 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEES 117
PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN++ P+E+EES
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEES 120
Query: 118 EKSMSEVNDEDDDEEGSGE 136
+KS+SEVNDEDD E+GS E
Sbjct: 121 DKSVSEVNDEDDAEDGSEE 139
>gi|312281681|dbj|BAJ33706.1| unnamed protein product [Thellungiella halophila]
Length = 144
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 115/128 (89%), Gaps = 3/128 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK++TR++KLSV KKPAK +S AAKDPNKPKRPASAFFVFME+FRE +KK+H
Sbjct: 1 MKGGKSKTETRSSKLSVTKKPAKGAGRSKAAAKDPNKPKRPASAFFVFMEDFRETFKKEH 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEES 117
PKNKSVAAVGKA G+KWKS+S+A+KAPYVAKAEKRKV+YEK+MK YN++ P+E+EES
Sbjct: 61 PKNKSVAAVGKAAGDKWKSLSDAEKAPYVAKAEKRKVDYEKNMKAYNKKLEEGPKEDEES 120
Query: 118 EKSMSEVN 125
+KS+SEVN
Sbjct: 121 DKSVSEVN 128
>gi|308569654|gb|ADO34793.1| high mobility group box 2 protein [Gossypium hirsutum]
Length = 146
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/113 (84%), Positives = 105/113 (92%), Gaps = 1/113 (0%)
Query: 1 MKGGKSKSDTRNAKLSVNKK-PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGGKSKSD ++AKLSVNKK KAG+KSGKAAKDPNKPKRPASAFFVFMEEFREQYKK+
Sbjct: 1 MKGGKSKSDAKSAKLSVNKKSTTKAGKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKE 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
HPKNKSVAAVGKAGG+KWKS+SEA+K PYV KAEKRKVEYEK+MK YN+RQ E
Sbjct: 61 HPKNKSVAAVGKAGGDKWKSLSEAEKRPYVDKAEKRKVEYEKNMKAYNKRQAE 113
>gi|312282031|dbj|BAJ33881.1| unnamed protein product [Thellungiella halophila]
Length = 141
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 114/128 (89%), Gaps = 6/128 (4%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK++TR++KLSVNKKP K G+ AAKDPNKPKRPASAFFVFMEEFRE YKK+H
Sbjct: 1 MKGGKSKTETRSSKLSVNKKPTKGGKG---AAKDPNKPKRPASAFFVFMEEFRETYKKEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEES 117
P NKSVAAVGKAGG+KWKS+S+++KAPY AKA+KRKVEYEK+M YN++Q P+E+EES
Sbjct: 58 PNNKSVAAVGKAGGQKWKSLSDSEKAPYQAKADKRKVEYEKNMNAYNKKQEEGPKEDEES 117
Query: 118 EKSMSEVN 125
+KS+SEV+
Sbjct: 118 DKSVSEVH 125
>gi|224083306|ref|XP_002306980.1| high mobility group family [Populus trichocarpa]
gi|222856429|gb|EEE93976.1| high mobility group family [Populus trichocarpa]
Length = 160
Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/116 (80%), Positives = 104/116 (89%), Gaps = 6/116 (5%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAG------RKSGKAAKDPNKPKRPASAFFVFMEEFRE 54
MKGG+SKSDT++AKLSV KKP K G RKSGKAAKDPNKPKRPASAFFVFMEEFRE
Sbjct: 1 MKGGRSKSDTKSAKLSVTKKPTKGGGGGAAARKSGKAAKDPNKPKRPASAFFVFMEEFRE 60
Query: 55 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
QYK++HPKNKSVAAVGKAGG+KWKS+SEA+KAP+VAKA+KRKVEYEK MK YN+ Q
Sbjct: 61 QYKREHPKNKSVAAVGKAGGDKWKSLSEAEKAPFVAKADKRKVEYEKKMKAYNKEQ 116
>gi|308569660|gb|ADO34795.1| high mobility group box 1 protein [Gossypium hirsutum]
Length = 142
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/129 (82%), Positives = 118/129 (91%), Gaps = 7/129 (5%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSKSDT++AKLSV +KAG+KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH
Sbjct: 1 MKGGKSKSDTKSAKLSVK---SKAGKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE----EEEE 116
PKNKSVAAVGKAGG+KWKS+SEA+KAPYVAKAEKRKVEYEK+MK YN+RQ E E+ E
Sbjct: 58 PKNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYEKNMKAYNKRQAEGPKDEDVE 117
Query: 117 SEKSMSEVN 125
S+KS+SEVN
Sbjct: 118 SDKSVSEVN 126
>gi|18394900|ref|NP_564124.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|75220405|sp|P93047.1|HMGB3_ARATH RecName: Full=High mobility group B protein 3; AltName: Full=High
mobility group protein B 2; Short=AtHMGbeta2; Short=HMG
beta 2; AltName: Full=Nucleosome/chromatin assembly
factor group D 03; Short=Nucleosome/chromatin assembly
factor group D 3
gi|15724174|gb|AAL06479.1|AF411789_1 At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|1694976|emb|CAA70691.1| HMG1 [Arabidopsis thaliana]
gi|2832361|emb|CAA74402.1| HMG protein [Arabidopsis thaliana]
gi|20453325|gb|AAM19901.1| At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|21537072|gb|AAM61413.1| unknown [Arabidopsis thaliana]
gi|22530942|gb|AAM96975.1| expressed protein [Arabidopsis thaliana]
gi|23198424|gb|AAN15739.1| expressed protein [Arabidopsis thaliana]
gi|332191888|gb|AEE30009.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 141
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 112/128 (87%), Gaps = 6/128 (4%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEES 117
PKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN++ P+E+EES
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEES 117
Query: 118 EKSMSEVN 125
+KS+SEVN
Sbjct: 118 DKSVSEVN 125
>gi|18394898|ref|NP_564123.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|75219648|sp|O49596.1|HMGB2_ARATH RecName: Full=High mobility group B protein 2; AltName: Full=High
mobility group protein B 1; Short=AtHMGbeta1; Short=HMG
beta 1; AltName: Full=Nucleosome/chromatin assembly
factor group D 02; Short=Nucleosome/chromatin assembly
factor group D 2
gi|13877971|gb|AAK44063.1|AF370248_1 unknown protein [Arabidopsis thaliana]
gi|2832359|emb|CAA74401.1| HMG protein [Arabidopsis thaliana]
gi|17104699|gb|AAL34238.1| unknown protein [Arabidopsis thaliana]
gi|21536964|gb|AAM61305.1| unknown [Arabidopsis thaliana]
gi|26452113|dbj|BAC43146.1| unknown protein [Arabidopsis thaliana]
gi|225897948|dbj|BAH30306.1| hypothetical protein [Arabidopsis thaliana]
gi|332191885|gb|AEE30006.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 144
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 112/128 (87%), Gaps = 3/128 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEES 117
PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN++ P+E+EES
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEES 120
Query: 118 EKSMSEVN 125
+KS+SEVN
Sbjct: 121 DKSVSEVN 128
>gi|145323960|ref|NP_001077569.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|332191887|gb|AEE30008.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 143
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 112/128 (87%), Gaps = 3/128 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEES 117
PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN++ P+E+EES
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEES 120
Query: 118 EKSMSEVN 125
+KS+SEVN
Sbjct: 121 DKSVSEVN 128
>gi|304651500|gb|ADM47612.1| high mobility group protein [Hevea brasiliensis]
Length = 146
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/113 (85%), Positives = 106/113 (93%), Gaps = 1/113 (0%)
Query: 1 MKGGKSKSDTRNA-KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGGKSKSDT+ A +LSVNKKPAKA +KSGKAAKDPNKPKRPASAFFVFMEEFREQYKK+
Sbjct: 1 MKGGKSKSDTKAANRLSVNKKPAKASKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKE 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
HPKNKSVAAVGKAGG+KWKS+SEA+KAPYVAKAEKRKVEYEK +K YN+ Q E
Sbjct: 61 HPKNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYEKKLKAYNKGQAE 113
>gi|255539248|ref|XP_002510689.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223551390|gb|EEF52876.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 145
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+D +N+KLSVNKKP KA +K+GKAAKDPNKPKRPASAFFVFMEEFREQYKK+H
Sbjct: 1 MKGGKSKADAKNSKLSVNKKPVKATKKAGKAAKDPNKPKRPASAFFVFMEEFREQYKKEH 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
PKNKSVAAVGKAGG++WKSMSE++KAP+VAKAEKRK+EYEK +K YN+ Q E
Sbjct: 61 PKNKSVAAVGKAGGDRWKSMSESEKAPFVAKAEKRKIEYEKKLKAYNKGQAE 112
>gi|224081483|ref|XP_002306429.1| high mobility group family [Populus trichocarpa]
gi|222855878|gb|EEE93425.1| high mobility group family [Populus trichocarpa]
Length = 144
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 104/127 (81%), Gaps = 2/127 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SKSD+RN + +K A AG K S KAAKDPNKPKRPASAFFVFME+FR+QYK+
Sbjct: 1 MKGGRSKSDSRNNDAKLKRKGAGAGTKASKKAAKDPNKPKRPASAFFVFMEDFRKQYKES 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP-EEEEESE 118
HP NKSVAAVGKAGG+KWKS+SEA+KAPY AKAEKRK EY KDM YN+R ++ES+
Sbjct: 61 HPNNKSVAAVGKAGGDKWKSLSEAEKAPYAAKAEKRKFEYNKDMAAYNKRLAGGNDDESD 120
Query: 119 KSMSEVN 125
KS SEVN
Sbjct: 121 KSKSEVN 127
>gi|357640485|gb|AET87126.1| high mobility group B2 protein [Brassica napus]
Length = 145
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/129 (74%), Positives = 113/129 (87%), Gaps = 4/129 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK++TR++KLSV KKPAKA S AAKDPNKPKRPASAFFVFME+FR+ YKKDH
Sbjct: 1 MKGGKSKTETRSSKLSVAKKPAKAAGGSKAAAKDPNKPKRPASAFFVFMEDFRQTYKKDH 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR----QPEEEEE 116
P NKSVAAVGKAGGEKWKS+S+++KAP+VAKA+KRKVEYEK MK YN++ E+EEE
Sbjct: 61 PNNKSVAAVGKAGGEKWKSLSDSEKAPFVAKADKRKVEYEKTMKAYNKKLEEGPKEDEEE 120
Query: 117 SEKSMSEVN 125
S+KS+SEVN
Sbjct: 121 SDKSVSEVN 129
>gi|118488125|gb|ABK95882.1| unknown [Populus trichocarpa]
Length = 151
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/117 (75%), Positives = 98/117 (83%), Gaps = 5/117 (4%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-----DPNKPKRPASAFFVFMEEFREQ 55
MKGG+SKSDT++AKLSVNKKP K G + DPNKPKRPASAFFVFMEEFREQ
Sbjct: 1 MKGGRSKSDTKSAKLSVNKKPTKGGAAAAAKKSGKAAKDPNKPKRPASAFFVFMEEFREQ 60
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
YKK+HPKNKSVAAVGKAGG+KWKS+S A+KAPYVAKA+KRKVEYEK MK YN+ Q E
Sbjct: 61 YKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNKEQAE 117
>gi|118484838|gb|ABK94286.1| unknown [Populus trichocarpa]
Length = 144
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/127 (70%), Positives = 104/127 (81%), Gaps = 2/127 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SKSD+RN + +K A AG K S KAAKDPNKPKRPASAFFVFME+FR+QYK+
Sbjct: 1 MKGGRSKSDSRNNDAKLKRKGAGAGTKASKKAAKDPNKPKRPASAFFVFMEDFRKQYKES 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP-EEEEESE 118
HP NKSVAAVGKAGG+KWKS+SEA+KAP+ AKAEKRK EY KDM YN+R ++ES+
Sbjct: 61 HPNNKSVAAVGKAGGDKWKSLSEAEKAPFAAKAEKRKFEYNKDMAAYNKRLAGGNDDESD 120
Query: 119 KSMSEVN 125
KS SEVN
Sbjct: 121 KSKSEVN 127
>gi|225457566|ref|XP_002272299.1| PREDICTED: high mobility group-like isoform 1 [Vitis vinifera]
gi|359491843|ref|XP_003634333.1| PREDICTED: high mobility group-like isoform 2 [Vitis vinifera]
gi|297745562|emb|CBI40727.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/137 (67%), Positives = 107/137 (78%), Gaps = 12/137 (8%)
Query: 1 MKGGKSKSDTR--NAKLSVNKKPAKAGRKSGKAAK----DPNKPKRPASAFFVFMEEFRE 54
MKGG+SKSDT+ +AKLSV K A + DPNKPKRPASAFFVFMEEFR+
Sbjct: 1 MKGGRSKSDTKKADAKLSVKKGAAATKAGKKTKKEKPVKDPNKPKRPASAFFVFMEEFRK 60
Query: 55 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP--- 111
QYK+ HP NKSV+ VGKAGG+KWKSMSEA+KAPYVAKAEKRKVEYEK+MK YN++Q
Sbjct: 61 QYKEKHPSNKSVSVVGKAGGDKWKSMSEAEKAPYVAKAEKRKVEYEKNMKAYNKKQAEGT 120
Query: 112 ---EEEEESEKSMSEVN 125
EEE+ESEKS+SEVN
Sbjct: 121 KVVEEEDESEKSLSEVN 137
>gi|79318295|ref|NP_001031075.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191889|gb|AEE30010.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 147
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/109 (74%), Positives = 97/109 (88%), Gaps = 3/109 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
PKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN++
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106
>gi|308569658|gb|ADO34794.1| high mobility group box 4 protein [Gossypium hirsutum]
Length = 148
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/113 (76%), Positives = 99/113 (87%), Gaps = 1/113 (0%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGGKSKSDT++++L+VNKK + K A DPNKPKRPASAFFVFMEEFREQYKK+
Sbjct: 1 MKGGKSKSDTKSSRLAVNKKSSAKAGKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKE 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
HPKNKSVAAVGKAGGEKWKS+S+A+KAPY+AKAEKRKVEYEK+MK Y +RQ E
Sbjct: 61 HPKNKSVAAVGKAGGEKWKSLSDAEKAPYIAKAEKRKVEYEKNMKAYTKRQAE 113
>gi|359476973|ref|XP_002280084.2| PREDICTED: high mobility group B2 protein-like isoform 1 [Vitis
vinifera]
Length = 156
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/139 (67%), Positives = 107/139 (76%), Gaps = 14/139 (10%)
Query: 1 MKGGKSKSDT-----RNAKLSVNKKPAKA-GRKSGK---AAKDPNKPKRPASAFFVFMEE 51
MKGGKSK+ NA+LSV KK A A G+K+ K A KDPNKPKRPASAFFVFMEE
Sbjct: 1 MKGGKSKAAEVKRADSNARLSVKKKGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEE 60
Query: 52 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP 111
FR+QYK+ HP NKSV+ VGKAGG+KWKS+SEA+KAPYVAKAEKRK EY K M+ YN+R
Sbjct: 61 FRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRMA 120
Query: 112 E-----EEEESEKSMSEVN 125
E EEEES+KS SEVN
Sbjct: 121 EGPTAAEEEESDKSRSEVN 139
>gi|296088654|emb|CBI37645.3| unnamed protein product [Vitis vinifera]
Length = 154
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/137 (67%), Positives = 107/137 (78%), Gaps = 12/137 (8%)
Query: 1 MKGGKSKS---DTRNAKLSVNKKPAKA-GRKSGK---AAKDPNKPKRPASAFFVFMEEFR 53
MKGGKSK+ ++KLSV KK A A G+K+ K A KDPNKPKRPASAFFVFMEEFR
Sbjct: 1 MKGGKSKAAEVKRADSKLSVKKKGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEEFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE- 112
+QYK+ HP NKSV+ VGKAGG+KWKS+SEA+KAPYVAKAEKRK EY K M+ YN+R E
Sbjct: 61 KQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRMAEG 120
Query: 113 ----EEEESEKSMSEVN 125
EEEES+KS SEVN
Sbjct: 121 PTAAEEEESDKSRSEVN 137
>gi|224065681|ref|XP_002301918.1| high mobility group family [Populus trichocarpa]
gi|222843644|gb|EEE81191.1| high mobility group family [Populus trichocarpa]
Length = 152
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 97/117 (82%), Gaps = 5/117 (4%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-----DPNKPKRPASAFFVFMEEFREQ 55
MKGG+SKSDT++AKLSVNKKP K + DPNKPKRPASAFFVFMEEFREQ
Sbjct: 1 MKGGRSKSDTKSAKLSVNKKPTKGAAAAAAKKSGKAAKDPNKPKRPASAFFVFMEEFREQ 60
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
YKK+HPKNKSVAAVGKAGG+KWKS+S A+KAPYVAKA+KRKVEYEK MK YN+ Q E
Sbjct: 61 YKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNKEQAE 117
>gi|359476975|ref|XP_003631923.1| PREDICTED: high mobility group B2 protein-like isoform 2 [Vitis
vinifera]
Length = 125
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/125 (68%), Positives = 99/125 (79%), Gaps = 9/125 (7%)
Query: 1 MKGGKSKSDT-----RNAKLSVNKKPAKA-GRKSGK---AAKDPNKPKRPASAFFVFMEE 51
MKGGKSK+ NA+LSV KK A A G+K+ K A KDPNKPKRPASAFFVFMEE
Sbjct: 1 MKGGKSKAAEVKRADSNARLSVKKKGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEE 60
Query: 52 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP 111
FR+QYK+ HP NKSV+ VGKAGG+KWKS+SEA+KAPYVAKAEKRK EY K M+ YN+R
Sbjct: 61 FRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRME 120
Query: 112 EEEEE 116
E++EE
Sbjct: 121 EDDEE 125
>gi|1052956|gb|AAC50019.1| high mobility group protein 2 HMG2 [Ipomoea nil]
Length = 146
Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 104/128 (81%), Gaps = 5/128 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+ + N KL+V K+ + +KS K+ KDPNKPKRP SAFFVFME+FR+ YK+ H
Sbjct: 1 MKGGKSKAKSDN-KLAVKKRGCET-KKSKKSVKDPNKPKRPPSAFFVFMEDFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEE---EEES 117
P NKSVAAVGKAGG+KWK +++A+KAP++AKAEKRK EYEK M+ YNR+Q E EEES
Sbjct: 59 PNNKSVAAVGKAGGDKWKQLTDAEKAPFIAKAEKRKQEYEKSMQAYNRKQAGEAADEEES 118
Query: 118 EKSMSEVN 125
+KS SEVN
Sbjct: 119 DKSRSEVN 126
>gi|729736|sp|P40619.1|HMGL_IPONI RecName: Full=HMG1/2-like protein
Length = 144
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/134 (63%), Positives = 109/134 (81%), Gaps = 5/134 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+ + N KL+V KK A +K+ KA KDPNKPKRP SAFFVFME+FR+ YK+ H
Sbjct: 1 MKGGKSKAKSDN-KLAV-KKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEES 117
P NKSVA VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN++Q EEEES
Sbjct: 59 PNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEES 118
Query: 118 EKSMSEVNDEDDDE 131
+KS SEVND+D+D+
Sbjct: 119 DKSRSEVNDDDEDQ 132
>gi|1813329|dbj|BAA19156.1| HMG-1 [Canavalia gladiata]
Length = 141
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 83/126 (65%), Positives = 100/126 (79%), Gaps = 5/126 (3%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K K+D + A + +K A AGRK S KAAKDPNKPKRP SAFFVFM EFREQYKK+HP N
Sbjct: 3 KVKADAKAADNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPTN 62
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR----RQPEEEEESEK 119
KSVA VGKAGG+KWKS+S+A+KAP+VA+AEK+K EY+K + YNR + P EEE+S+K
Sbjct: 63 KSVAVVGKAGGDKWKSLSDAEKAPFVARAEKKKEEYDKSILAYNRKLEGKNPSEEEKSDK 122
Query: 120 SMSEVN 125
S SEVN
Sbjct: 123 SKSEVN 128
>gi|194466165|gb|ACF74313.1| high mobility group protein 2 [Arachis hypogaea]
Length = 153
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 108/137 (78%), Gaps = 12/137 (8%)
Query: 1 MKGGKSKSDTR--NAKLSVNKKPAKAGRKSGK-----AAKDPNKPKRPASAFFVFMEEFR 53
MKG KSK++++ +AKL+VNKK A + K AAKDPNK KRP SAFFVFMEEFR
Sbjct: 1 MKGAKSKAESKRGDAKLAVNKKGTPATKGGRKTGKGKAAKDPNKLKRPPSAFFVFMEEFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE- 112
+Q+ KDHP+NK+V+AVGKA G KWK MS+A+KAPYVAK+EKRK +YEK+M+ YN++Q E
Sbjct: 61 KQFNKDHPENKAVSAVGKAAGAKWKQMSDAEKAPYVAKSEKRKQDYEKNMRAYNKKQAEG 120
Query: 113 ----EEEESEKSMSEVN 125
+EEES+KS+SEVN
Sbjct: 121 PTGGDEEESDKSISEVN 137
>gi|351725757|ref|NP_001235312.1| uncharacterized protein LOC100499992 [Glycine max]
gi|255628371|gb|ACU14530.1| unknown [Glycine max]
Length = 139
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 100/125 (80%), Gaps = 4/125 (3%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K+KSD + A + +K A AGRK S KAAKDPNKPKRP SAFFVFM EFREQ+KK+HP N
Sbjct: 3 KAKSDAKAADSRLKRKGAGAGRKQSRKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNN 62
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR---QPEEEEESEKS 120
KSVA VGKAGGEKWKS+S+A+KAP+VA AEK+K EYEK + YN++ + EE+ES+KS
Sbjct: 63 KSVAVVGKAGGEKWKSLSDAEKAPFVATAEKKKQEYEKTISAYNKQLEGKNSEEDESDKS 122
Query: 121 MSEVN 125
SEVN
Sbjct: 123 KSEVN 127
>gi|356508616|ref|XP_003523051.1| PREDICTED: HMG1/2-like protein-like [Glycine max]
Length = 152
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 98/118 (83%), Gaps = 6/118 (5%)
Query: 1 MKGGKSKSDTR--NAKLSVNKKPAKAGRKS----GKAAKDPNKPKRPASAFFVFMEEFRE 54
MKGGKSK++++ +AKL+VNKK A + GKAAKDPNKPKRP SAFFVFMEEFR+
Sbjct: 1 MKGGKSKTESKRADAKLAVNKKGAATKTRKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60
Query: 55 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
+ K+HP NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++Q E
Sbjct: 61 VFNKEHPDNKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAE 118
>gi|351725567|ref|NP_001236841.1| HMG1/2-like protein [Glycine max]
gi|123379|sp|P26585.1|HMGL_SOYBN RecName: Full=HMG1/2-like protein; AltName: Full=Protein SB11
gi|18645|emb|CAA41200.1| HMG-1 like protein gene [Glycine max]
Length = 152
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 99/118 (83%), Gaps = 6/118 (5%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKA-GRKS---GKAAKDPNKPKRPASAFFVFMEEFRE 54
MKGGKSK++++ A KL+VNKK A RK GKAAKDPNKPKRP SAFFVFMEEFR+
Sbjct: 1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60
Query: 55 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
+ K+HP+NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++Q E
Sbjct: 61 VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAE 118
>gi|148250187|gb|ABQ53545.1| HMG1 protein [Arachis diogoi]
Length = 141
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/124 (64%), Positives = 99/124 (79%), Gaps = 10/124 (8%)
Query: 12 NAKLSVNKKPAKAGRKSGK-----AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV 66
+AKL+VNKK A + K AAKDPNKPKRP SAFFVFMEEFR+Q+ KDHP+NK+V
Sbjct: 2 DAKLAVNKKGTPAAKGGRKTGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKDHPENKAV 61
Query: 67 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE-----EEEESEKSM 121
+AVGKA G KWK MS+A+KAPYVAK+EKRK +YEK+M+ YN++Q E +EEES+KS+
Sbjct: 62 SAVGKAAGAKWKQMSDAEKAPYVAKSEKRKQDYEKNMRAYNKKQAEGPTGGDEEESDKSI 121
Query: 122 SEVN 125
SEVN
Sbjct: 122 SEVN 125
>gi|351723773|ref|NP_001235499.1| uncharacterized protein LOC100305957 [Glycine max]
gi|255627099|gb|ACU13894.1| unknown [Glycine max]
Length = 142
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 99/125 (79%), Gaps = 4/125 (3%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K+KSD + A + +K A AGRK S KAAKDPNKPK P SAFFVFM EFREQ+KK+HP N
Sbjct: 3 KAKSDAKAADSRLKRKGAGAGRKQSKKAAKDPNKPKGPPSAFFVFMSEFREQFKKEHPNN 62
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR---QPEEEEESEKS 120
KSVA VGKAGG+KWKS+S+A+KAP+VA AEK+K EYEK + YN++ + EE+ES+KS
Sbjct: 63 KSVAVVGKAGGDKWKSLSDAEKAPFVATAEKKKQEYEKTILAYNKKLEGKNSEEDESDKS 122
Query: 121 MSEVN 125
SEVN
Sbjct: 123 KSEVN 127
>gi|388497528|gb|AFK36830.1| unknown [Medicago truncatula]
Length = 155
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/119 (68%), Positives = 96/119 (80%), Gaps = 7/119 (5%)
Query: 1 MKGGKSKSDTR--NAKLSVNKKPA---KAGRKS--GKAAKDPNKPKRPASAFFVFMEEFR 53
MKG KSK +++ +AKL+VNKK A K GRK GK KDPNKPKRP SAFFVFME+FR
Sbjct: 1 MKGAKSKGESKKADAKLAVNKKGAAATKGGRKPAKGKEPKDPNKPKRPPSAFFVFMEDFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
+Q+KKD+P NK+V+AVGKA G KWKS+SEA+KAPY AKAEKRK EYEK MK YN++Q E
Sbjct: 61 KQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKTMKAYNKKQAE 119
>gi|388497036|gb|AFK36584.1| unknown [Medicago truncatula]
Length = 155
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/119 (68%), Positives = 96/119 (80%), Gaps = 7/119 (5%)
Query: 1 MKGGKSKSDTR--NAKLSVNKKPA---KAGRKS--GKAAKDPNKPKRPASAFFVFMEEFR 53
MKG KSK +++ +AKL+VNKK A K GRK GK KDPNKPKRP SAFFVFME+FR
Sbjct: 1 MKGAKSKGESKKADAKLAVNKKGAVATKGGRKPAKGKEPKDPNKPKRPPSAFFVFMEDFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
+Q+KKD+P NK+V+AVGKA G KWKS+SEA+KAPY AKAEKRK EYEK MK YN++Q E
Sbjct: 61 KQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKTMKAYNKKQAE 119
>gi|449455609|ref|XP_004145545.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449511984|ref|XP_004164108.1| PREDICTED: HMG1/2-like protein-like isoform 1 [Cucumis sativus]
gi|449511988|ref|XP_004164109.1| PREDICTED: HMG1/2-like protein-like isoform 2 [Cucumis sativus]
Length = 146
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 105/131 (80%), Gaps = 6/131 (4%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGGKS+S+++ A + K A +K K A DPNKPKRPASAFFVFMEEFR+++ ++
Sbjct: 1 MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE-----EE 114
+P NK+V+AVGKA G+KWKSMS+A+KAPY+AKA+KRKVEYEK+MK YN++Q EE
Sbjct: 61 NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
Query: 115 EESEKSMSEVN 125
+ESEKSMSEVN
Sbjct: 121 DESEKSMSEVN 131
>gi|388504718|gb|AFK40425.1| unknown [Lotus japonicus]
Length = 152
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/120 (65%), Positives = 98/120 (81%), Gaps = 10/120 (8%)
Query: 1 MKGGKSKSDTRNA--KLSVNKK------PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEF 52
MKGGKS+++++ A KL+VNKK PA+ + GKAAKDPNKPKRP SAFFVFME+F
Sbjct: 1 MKGGKSRTESKRAEPKLAVNKKAGGATKPARGAK--GKAAKDPNKPKRPPSAFFVFMEDF 58
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
R+ + K++P+NK+V+AVGKA G KWKSMSEA+KAPYVAKAEKRK +YEK MK YN++Q E
Sbjct: 59 RKIFNKENPENKAVSAVGKAAGAKWKSMSEAEKAPYVAKAEKRKADYEKTMKAYNKKQAE 118
>gi|116778852|gb|ABK21026.1| unknown [Picea sitchensis]
gi|116782574|gb|ABK22556.1| unknown [Picea sitchensis]
gi|116782678|gb|ABK22606.1| unknown [Picea sitchensis]
gi|116782786|gb|ABK22657.1| unknown [Picea sitchensis]
gi|116782898|gb|ABK22712.1| unknown [Picea sitchensis]
gi|116791878|gb|ABK26144.1| unknown [Picea sitchensis]
gi|148907501|gb|ABR16881.1| unknown [Picea sitchensis]
gi|224284566|gb|ACN40016.1| unknown [Picea sitchensis]
gi|224285212|gb|ACN40332.1| unknown [Picea sitchensis]
gi|224286734|gb|ACN41070.1| unknown [Picea sitchensis]
Length = 157
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 100/143 (69%), Gaps = 18/143 (12%)
Query: 1 MKGGKSKSDTRNAKLSVNKKP--------------AKAGRKSGKAAKDPNKPKRPASAFF 46
MKGGK+K++ + V +KP ++ +K KAAKDPNKPKRPASAFF
Sbjct: 1 MKGGKAKNEASSTLKKVEEKPIGKRKTAAKESKVSSRQEKKGRKAAKDPNKPKRPASAFF 60
Query: 47 VFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
VFME+FR+ YK+ +P KSV+ VGKAGG+KWKSMSEADKAPYVAKA KRK EYEK+M Y
Sbjct: 61 VFMEDFRKTYKEKNPNVKSVSVVGKAGGDKWKSMSEADKAPYVAKAGKRKTEYEKNMAAY 120
Query: 107 NRRQP----EEEEESEKSMSEVN 125
N +Q + EES+KS SEVN
Sbjct: 121 NNKQTSTAGDSAEESDKSKSEVN 143
>gi|449456873|ref|XP_004146173.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449495123|ref|XP_004159740.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|63020536|gb|AAY26151.1| high mobility group protein [Cucumis sativus]
Length = 146
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/130 (68%), Positives = 101/130 (77%), Gaps = 5/130 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK + + K A A +KS KAAKDPNKPKRPASAFFVFMEEFR+QYKK+H
Sbjct: 1 MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR-----QPEEEE 115
P NKSVAAVGKAGG+KWKSMS+A+KAPY+ KAEKRK EY K M+ YN+R EEE
Sbjct: 61 PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
Query: 116 ESEKSMSEVN 125
ES+KS SEVN
Sbjct: 121 ESDKSKSEVN 130
>gi|2894109|emb|CAA05365.1| high mobility group protein [Solanum tuberosum]
Length = 141
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 97/128 (75%), Gaps = 5/128 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK+ + KL V KK A +K+ AAKDPNKPKRP SAFFVFMEEFR+ YK+ H
Sbjct: 1 MKGAKSKAKA-DTKLGVRKK-ATESKKAKNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP---EEEEES 117
P NKSVA VGKAGG+KWK +S+ +KAPY AKAEKRK EY+K+M YN++ ++EES
Sbjct: 59 PNNKSVAVVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKNMDAYNKKLAAGDADDEES 118
Query: 118 EKSMSEVN 125
+KS SEV+
Sbjct: 119 DKSKSEVH 126
>gi|217075707|gb|ACJ86213.1| unknown [Medicago truncatula]
gi|388513073|gb|AFK44598.1| unknown [Medicago truncatula]
Length = 142
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/124 (64%), Positives = 95/124 (76%), Gaps = 3/124 (2%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K K+D++ A + +K A AGRK + KAAKDPNKPKRP SAFFVFM +FREQYKKDHP N
Sbjct: 3 KVKADSKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNN 62
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ--PEEEEESEKSM 121
KSVAAVGKA GE WKSMSE DKAPY A+A K+K EYE + YN++ +EE+ S+KS
Sbjct: 63 KSVAAVGKACGEAWKSMSEEDKAPYAARALKKKEEYEVATQAYNKKLEGKDEEDGSDKSK 122
Query: 122 SEVN 125
SEVN
Sbjct: 123 SEVN 126
>gi|729737|sp|P40620.1|HMGL_VICFA RecName: Full=HMG1/2-like protein
Length = 149
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/134 (61%), Positives = 101/134 (75%), Gaps = 9/134 (6%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFR 53
MKGGKSK +++ A KL+VNKK A A + K A KDPNKPKRP SAFFVFM +FR
Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ--P 111
EQYKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE ++ YN++
Sbjct: 61 EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLEGK 120
Query: 112 EEEEESEKSMSEVN 125
++EE S+KS SEVN
Sbjct: 121 DDEEGSDKSKSEVN 134
>gi|2196548|gb|AAB61215.1| DNA-binding protein [Nicotiana tabacum]
Length = 142
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 102/127 (80%), Gaps = 4/127 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+ ++KL V +K A +K+ KAAKDPNKPKRP SAFFVFMEEFR+ YK+ H
Sbjct: 1 MKGGKSKAGA-DSKLGV-RKKATETKKAKKAAKDPNKPKRPPSAFFVFMEEFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP--EEEEESE 118
P NKSVAAVGKAGG+ WK +SEA+KAPY AKAEKRK EY+K+M YNR+Q EE+ES+
Sbjct: 59 PNNKSVAAVGKAGGDAWKKLSEAEKAPYQAKAEKRKAEYQKNMDAYNRKQAGDAEEDESD 118
Query: 119 KSMSEVN 125
KS SEV+
Sbjct: 119 KSKSEVH 125
>gi|309243128|gb|ADD74180.2| high mobility group box 3 protein [Gossypium hirsutum]
Length = 139
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 102/127 (80%), Gaps = 2/127 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGG++KSD+ A + K A AG+++ KAAKDPNKPKRPASAFFVFMEEFR+QYK+ +
Sbjct: 1 MKGGQTKSDSMQAGNKLKGKGAGAGKRAKKAAKDPNKPKRPASAFFVFMEEFRKQYKEAN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP--EEEEESE 118
P N+SV+AVGKAGGEKWKSM++A+KAPYV KAEKRK EY K M+ YN + ++ES+
Sbjct: 61 PDNRSVSAVGKAGGEKWKSMTDAEKAPYVQKAEKRKSEYNKKMQAYNLKLAGGGNDDESD 120
Query: 119 KSMSEVN 125
KS SEVN
Sbjct: 121 KSKSEVN 127
>gi|357484151|ref|XP_003612362.1| HMG1/2-like protein [Medicago truncatula]
gi|355513697|gb|AES95320.1| HMG1/2-like protein [Medicago truncatula]
Length = 140
Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 93/125 (74%), Gaps = 4/125 (3%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K+ SD + A + +K A G K K AKDPNKPKRP SAFFVFM EFRE++KK++P NK
Sbjct: 3 KAVSDAKPADNRLKRKGAGTGTKQSKKAKDPNKPKRPPSAFFVFMSEFRERFKKENPSNK 62
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN----RRQPEEEEESEKS 120
SVA VGKAGG++WK++S+ADKAP++AKA+K K EYEK M+ YN + EEE SEKS
Sbjct: 63 SVAVVGKAGGKEWKALSDADKAPFIAKADKLKEEYEKTMRAYNMGITEKNASEEEGSEKS 122
Query: 121 MSEVN 125
SEVN
Sbjct: 123 KSEVN 127
>gi|297819892|ref|XP_002877829.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
gi|297323667|gb|EFH54088.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
Length = 185
Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 86/114 (75%), Gaps = 3/114 (2%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+K
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSGEVFF 139
APY KA KRK EYEK M YN+ E +ESEKS SEVNDED E SGEV
Sbjct: 101 APYEEKAAKRKAEYEKQMDAYNKNMEEGSDESEKSRSEVNDED---EASGEVTI 151
>gi|42572635|ref|NP_974413.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|222423104|dbj|BAH19531.1| AT3G51880 [Arabidopsis thaliana]
gi|332645335|gb|AEE78856.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 185
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/114 (64%), Positives = 86/114 (75%), Gaps = 3/114 (2%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+K
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSGEVFF 139
APY KA KRK EYEK M YN+ E +ESEKS SE+NDED E SGEV
Sbjct: 101 APYEEKAAKRKAEYEKQMDAYNKNLEEGSDESEKSRSEINDED---EASGEVTI 151
>gi|436424|emb|CAA54168.1| HMG 1 protein [Pisum sativum]
Length = 154
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 93/119 (78%), Gaps = 7/119 (5%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFR 53
MKGGKSK +++ A KL+VNKK A A + K A KDPNKPKRP SAFFVFME+FR
Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAPATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMEDFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
+Q+KK + NK+V+AVGKA G KWKSM+EA+KAPY AKAEKRK EYEK MK+YN++Q E
Sbjct: 61 KQFKKGNADNKAVSAVGKAAGAKWKSMTEAEKAPYAAKAEKRKAEYEKSMKSYNKKQAE 119
>gi|194466163|gb|ACF74312.1| high mobility group protein 1 [Arachis hypogaea]
Length = 139
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 97/125 (77%), Gaps = 4/125 (3%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K K+D + A + +K A GRK K AKDPNKPKRP SAFFVFM EFREQYKK+HP NK
Sbjct: 3 KVKADAKAADNRLKRKGAGTGRKQAKKAKDPNKPKRPPSAFFVFMSEFREQYKKEHPNNK 62
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ----PEEEEESEKS 120
SVA VGKAGG++WKSMS+ADKAPY AKAEK+K EYE+ M+ YN++Q EE+ES+KS
Sbjct: 63 SVAVVGKAGGDRWKSMSDADKAPYQAKAEKKKEEYERTMQAYNKKQESKGASEEDESDKS 122
Query: 121 MSEVN 125
SEVN
Sbjct: 123 KSEVN 127
>gi|115480551|ref|NP_001063869.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|50726318|dbj|BAD33893.1| putative HMGd1 [Oryza sativa Japonica Group]
gi|113632102|dbj|BAF25783.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|213959176|gb|ACJ54922.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215694881|dbj|BAG90072.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 127
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/135 (55%), Positives = 94/135 (69%), Gaps = 15/135 (11%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+S+S +++LSV K KA KDPNKPKRP SAFFVFME+FR+ YK+ HP K
Sbjct: 4 RSRSSNGDSRLSVRKT---------KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEESEKSM 121
V+ +GKAGG+KWKSM++ADKAP+V KAEK K EY K + YN +Q P +S+KS
Sbjct: 55 QVSVIGKAGGDKWKSMTDADKAPFVTKAEKLKAEYTKKIDAYNNKQAGGPATSGDSDKSK 114
Query: 122 SEVNDEDDDEEGSGE 136
SEVNDED EGSG+
Sbjct: 115 SEVNDED---EGSGD 126
>gi|297836478|ref|XP_002886121.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
gi|297331961|gb|EFH62380.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 98/145 (67%), Gaps = 15/145 (10%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKPGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE-----EE 114
+P NKSVA VGKA G +WKSM+E DKAPYVAKAE RK EY K M+ YN + EE
Sbjct: 57 NPNNKSVATVGKAAGARWKSMTEEDKAPYVAKAESRKTEYLKTMQQYNMKLASGTNRGEE 116
Query: 115 EESEKSMSEVNDEDDDEEGSGEVFF 139
++S+KS SEV DE GS EVF
Sbjct: 117 DDSDKSKSEV-----DEAGSEEVFM 136
>gi|449461783|ref|XP_004148621.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 169
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 94/122 (77%), Gaps = 3/122 (2%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A + +K + +K KA KDPNKPKRP SAFFVF+EEFR++YK+++P K+V+AVG
Sbjct: 28 RKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVKAVSAVG 87
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEESEKSMSEVNDE 127
KAGGEKWKS+S A+KAPY AKA KRK EYEK M+ Y+ ++ ++EESE+S SEVNDE
Sbjct: 88 KAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAYDSKKVASAADDEESERSKSEVNDE 147
Query: 128 DD 129
D+
Sbjct: 148 DE 149
>gi|22135473|gb|AAM93217.1|AF527616_1 nucleasome/chromatin assembly factor D protein NFD101 [Zea mays]
gi|2196672|emb|CAA70045.1| HMGd1 [Zea mays]
gi|194698578|gb|ACF83373.1| unknown [Zea mays]
gi|414886616|tpg|DAA62630.1| TPA: HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 93/132 (70%), Gaps = 14/132 (10%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSTAGDSRLSVRK---------TKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEESEKSM 121
V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN +Q P +S+KS
Sbjct: 55 QVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSK 114
Query: 122 SEVNDEDDDEEG 133
SEVNDE DEEG
Sbjct: 115 SEVNDE--DEEG 124
>gi|162459697|ref|NP_001105649.1| HMG-like nucleosome/chromatin assembly factor D [Zea mays]
gi|17017392|gb|AAL33650.1|AF440221_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 93/132 (70%), Gaps = 14/132 (10%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSTAGDSRLSVRK---------TKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEESEKSM 121
V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN +Q P +S+KS
Sbjct: 55 QVSLIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSK 114
Query: 122 SEVNDEDDDEEG 133
SEVNDE DEEG
Sbjct: 115 SEVNDE--DEEG 124
>gi|225448398|ref|XP_002269398.1| PREDICTED: high mobility group B protein 1 isoform 1 [Vitis
vinifera]
gi|147854340|emb|CAN83423.1| hypothetical protein VITISV_023376 [Vitis vinifera]
Length = 166
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/119 (62%), Positives = 90/119 (75%), Gaps = 4/119 (3%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L +K K +K A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP----EEEEESEKSMSEVN 125
KAGGEKWKS+SEADKAPY AKA KRK +YEK M YN++Q ++EEES++S SEVN
Sbjct: 89 KAGGEKWKSLSEADKAPYEAKAAKRKSDYEKLMAAYNKKQESMADDDEEESDRSKSEVN 147
>gi|15231065|ref|NP_190756.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|145332807|ref|NP_001078269.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|75274976|sp|O49595.1|HMGB1_ARATH RecName: Full=High mobility group B protein 1; AltName: Full=High
mobility group protein A; Short=AtHMGalpha; Short=HMG
alpha; AltName: Full=Nucleosome/chromatin assembly
factor group D 01; Short=Nucleosome/chromatin assembly
factor group D 1
gi|2832357|emb|CAA74400.1| HMG protein [Arabidopsis thaliana]
gi|3068715|gb|AAC14415.1| unknown [Arabidopsis thaliana]
gi|15912191|gb|AAL08229.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|21360557|gb|AAM47475.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|332645334|gb|AEE78855.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645336|gb|AEE78857.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 178
Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 82/104 (78%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+K
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDD 129
APY KA KRK EYEK M YN+ E +ESEKS SE+NDED+
Sbjct: 101 APYEEKAAKRKAEYEKQMDAYNKNLEEGSDESEKSRSEINDEDE 144
>gi|115470082|ref|NP_001058640.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|3885888|gb|AAC78104.1| high mobility group protein [Oryza sativa Japonica Group]
gi|23345287|gb|AAN28722.1| HMG1 protein [Oryza sativa Indica Group]
gi|30267833|gb|AAP21609.1| HMGB1 [Oryza sativa Indica Group]
gi|54291150|dbj|BAD61823.1| HMGB1 [Oryza sativa Japonica Group]
gi|113596680|dbj|BAF20554.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|213959190|gb|ACJ54929.1| HMG protein [Oryza sativa Japonica Group]
gi|215692803|dbj|BAG88247.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222636260|gb|EEE66392.1| hypothetical protein OsJ_22728 [Oryza sativa Japonica Group]
Length = 157
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/113 (64%), Positives = 88/113 (77%), Gaps = 6/113 (5%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V +KPA GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 59
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+K+ +PKNKSVAAVGKA G++WKS++EADKAPYVAKA K K EY K + YN+
Sbjct: 60 FKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAAYNK 112
>gi|397396|emb|CAA46876.1| DNA-binding protein [Zea mays]
Length = 168
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/113 (65%), Positives = 90/113 (79%), Gaps = 7/113 (6%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V +KPAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 12 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 69
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K + YN+
Sbjct: 70 FKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 122
>gi|145328748|ref|NP_001077909.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|222423535|dbj|BAH19737.1| AT2G17560 [Arabidopsis thaliana]
gi|330251559|gb|AEC06653.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 134
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 99/138 (71%), Gaps = 12/138 (8%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE----EEE 115
+P NKSVA VGKA G +WK+M++ DKAPYVAKAE RK EY K+++ YN + EE+
Sbjct: 57 NPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREED 116
Query: 116 ESEKSMSEVND---EDDD 130
+S+KS SEV++ EDDD
Sbjct: 117 DSDKSKSEVDEAEAEDDD 134
>gi|21592453|gb|AAM64404.1| putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 99/142 (69%), Gaps = 16/142 (11%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSG-KAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+G K KDPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGNKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE----EEE 115
+P NKSVA VGKA G +WKSM++ DKAPYVAKAE RK EY K+++ YN + EE+
Sbjct: 57 NPNNKSVATVGKAAGARWKSMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREED 116
Query: 116 ESEKSMSEVND-------EDDD 130
+S+KS SEV++ EDDD
Sbjct: 117 DSDKSKSEVDEAVSEEEAEDDD 138
>gi|293335943|ref|NP_001167650.1| high mobility group protein1 [Zea mays]
gi|123378|sp|P27347.1|MNB1B_MAIZE RecName: Full=DNA-binding protein MNB1B; AltName: Full=HMG1-like
protein
gi|22329|emb|CAA41220.1| high mobility group protein [Zea mays]
gi|5441502|emb|CAB46752.1| HMGa protein [Zea mays]
gi|22347617|gb|AAM95942.1| nucleosome/chromatin assembly factor group D protein [Zea mays]
gi|194701148|gb|ACF84658.1| unknown [Zea mays]
gi|194702316|gb|ACF85242.1| unknown [Zea mays]
gi|194703290|gb|ACF85729.1| unknown [Zea mays]
gi|195606194|gb|ACG24927.1| DNA-binding protein MNB1B [Zea mays]
gi|195612638|gb|ACG28149.1| DNA-binding protein MNB1B [Zea mays]
gi|195618138|gb|ACG30899.1| DNA-binding protein MNB1B [Zea mays]
gi|195618904|gb|ACG31282.1| DNA-binding protein MNB1B [Zea mays]
gi|195619012|gb|ACG31336.1| DNA-binding protein MNB1B [Zea mays]
gi|195619124|gb|ACG31392.1| DNA-binding protein MNB1B [Zea mays]
gi|195638824|gb|ACG38880.1| DNA-binding protein MNB1B [Zea mays]
gi|195642004|gb|ACG40470.1| DNA-binding protein MNB1B [Zea mays]
gi|223972731|gb|ACN30553.1| unknown [Zea mays]
gi|223972797|gb|ACN30586.1| unknown [Zea mays]
gi|223973279|gb|ACN30827.1| unknown [Zea mays]
gi|223974975|gb|ACN31675.1| unknown [Zea mays]
gi|413935043|gb|AFW69594.1| high mobility group protein1 [Zea mays]
Length = 157
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/113 (65%), Positives = 90/113 (79%), Gaps = 7/113 (6%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V +KPAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 58
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K + YN+
Sbjct: 59 FKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111
>gi|346467231|gb|AEO33460.1| hypothetical protein [Amblyomma maculatum]
Length = 115
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/97 (65%), Positives = 79/97 (81%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
GK KDPNKPKRP + FFVFME FR+QYK+ HPKNKSVA VGKAGGEKWKS+SE++KA +
Sbjct: 3 GKGEKDPNKPKRPPTGFFVFMEGFRKQYKEAHPKNKSVAVVGKAGGEKWKSLSESEKAVF 62
Query: 89 VAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVN 125
++KAEK + EY+K + Y + Q +EEES+KS SEVN
Sbjct: 63 LSKAEKLRSEYQKKIDAYEKGQHVDEEESDKSKSEVN 99
>gi|238013344|gb|ACR37707.1| unknown [Zea mays]
gi|414590135|tpg|DAA40706.1| TPA: HMG1/2-like protein [Zea mays]
Length = 127
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/133 (54%), Positives = 91/133 (68%), Gaps = 15/133 (11%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K K KDPNKPKRP +AFFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSGGGDSRLSVRKT---------KVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ----PEEEEESEKS 120
V+ +GKAGG+ WKS+S+A+KAPYV+KAEK KVEY K M YN +Q P +S+KS
Sbjct: 55 QVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKS 114
Query: 121 MSEVNDEDDDEEG 133
SEVN D DEEG
Sbjct: 115 KSEVN--DGDEEG 125
>gi|168032698|ref|XP_001768855.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168032700|ref|XP_001768856.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679967|gb|EDQ66408.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679968|gb|EDQ66409.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 110
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 85/110 (77%), Gaps = 3/110 (2%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K GK KDPN PKRP +AFF+F+ EFRE +K+++P K V AVGKAGGEKWKSMSEA+K
Sbjct: 1 KGGKKLKDPNAPKRPPTAFFIFLNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEAEKQ 60
Query: 87 PYVAKAEKRKVEYEKDMKNYNRRQPEEE---EESEKSMSEVNDEDDDEEG 133
P++ KA ++K EY+K + YN++Q EE EES+KS SE+ND++D+E G
Sbjct: 61 PFMTKAVQKKSEYDKTISAYNKKQDAEEVEAEESDKSKSEINDDEDEEVG 110
>gi|2832355|emb|CAA74403.1| HMG protein [Arabidopsis thaliana]
Length = 138
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 16/142 (11%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK+ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKA----GATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE----EEE 115
+P NKSVA VGKA G +WKSM++ DKAPYVAKAE RK EY K+++ YN + EE+
Sbjct: 57 NPNNKSVATVGKAAGARWKSMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREED 116
Query: 116 ESEKSMSEVND-------EDDD 130
+S+KS SEV++ EDDD
Sbjct: 117 DSDKSKSEVDEAVSEEEAEDDD 138
>gi|357123079|ref|XP_003563240.1| PREDICTED: DNA-binding protein MNB1B-like [Brachypodium distachyon]
Length = 160
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 87/113 (76%), Gaps = 6/113 (5%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + + KL+V +KPA GRK GKA KDPNKPKR SAFFVFM+EFR++
Sbjct: 1 MKGAKSKGAVKADTKLAVKSKGAEKPAAKGRK-GKAGKDPNKPKRAPSAFFVFMDEFRKE 59
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+K+ +PKNKSVAAVGKA GE+WK++SE+DKAPYVAKA K K EY K + YN+
Sbjct: 60 FKEKNPKNKSVAAVGKAAGERWKTLSESDKAPYVAKANKLKAEYNKAIAAYNK 112
>gi|255574381|ref|XP_002528104.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223532493|gb|EEF34283.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 171
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 90/124 (72%), Gaps = 4/124 (3%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A +V++ ++ KA KDPNKPKRP SAFFVF+EEFR+ +KK++P SVAAVG
Sbjct: 28 RKAAAAVDRSSKLKAKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPSVTSVAAVG 87
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEE----EEESEKSMSEVND 126
KAGG KWKSMS A+KAPY AKA K+K EY K M YN++Q EEES++S SEVND
Sbjct: 88 KAGGAKWKSMSSAEKAPYEAKAAKKKDEYGKLMNAYNKKQESTADDGEEESDRSKSEVND 147
Query: 127 EDDD 130
EDD+
Sbjct: 148 EDDE 151
>gi|15227862|ref|NP_179347.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|145323080|ref|NP_001031364.2| high mobility group B4 protein [Arabidopsis thaliana]
gi|310947092|sp|Q42344.1|HMGB4_ARATH RecName: Full=High mobility group B protein 4; AltName: Full=High
mobility group protein G; Short=AtHMGgamma; Short=HMG
gamma; AltName: Full=Nucleosome/chromatin assembly
factor group D 04; Short=Nucleosome/chromatin assembly
factor group D 4
gi|13926177|gb|AAK49570.1|AF370562_1 putative HMG protein [Arabidopsis thaliana]
gi|4914377|gb|AAD32913.1| putative HMG protein [Arabidopsis thaliana]
gi|23297615|gb|AAN12992.1| putative HMG protein [Arabidopsis thaliana]
gi|330251557|gb|AEC06651.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|330251558|gb|AEC06652.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 138
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 99/142 (69%), Gaps = 16/142 (11%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE----EEE 115
+P NKSVA VGKA G +WK+M++ DKAPYVAKAE RK EY K+++ YN + EE+
Sbjct: 57 NPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREED 116
Query: 116 ESEKSMSEVND-------EDDD 130
+S+KS SEV++ EDDD
Sbjct: 117 DSDKSKSEVDEAVSEEEAEDDD 138
>gi|226505018|ref|NP_001151148.1| LOC100284781 [Zea mays]
gi|195644628|gb|ACG41782.1| HMG1/2-like protein [Zea mays]
Length = 127
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 90/133 (67%), Gaps = 15/133 (11%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K K KDPNKPKRP + FFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSGGGDSRLSVRKT---------KVEKDPNKPKRPPTTFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ----PEEEEESEKS 120
V+ +GKAGG+ WKS+S+A+KAPYV+KAEK KVEY K M YN +Q P +S+KS
Sbjct: 55 QVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKS 114
Query: 121 MSEVNDEDDDEEG 133
SEVN D DEEG
Sbjct: 115 KSEVN--DGDEEG 125
>gi|125564627|gb|EAZ10007.1| hypothetical protein OsI_32309 [Oryza sativa Indica Group]
Length = 139
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 94/147 (63%), Gaps = 27/147 (18%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+S+S +++LSV K KA KDPNKPKRP SAFFVFME+FR+ YK+ HP K
Sbjct: 4 RSRSSNGDSRLSVRKT---------KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEA------------DKAPYVAKAEKRKVEYEKDMKNYNRRQ-- 110
V+ +GKAGG+KWKSM++A DKAP+V KAEK K EY K + YN +Q
Sbjct: 55 QVSVIGKAGGDKWKSMTDAIGGYVVVAVPCKDKAPFVTKAEKLKAEYTKKIDAYNNKQAG 114
Query: 111 -PEEEEESEKSMSEVNDEDDDEEGSGE 136
P +S+KS SEVNDED EGSG+
Sbjct: 115 GPATSGDSDKSKSEVNDED---EGSGD 138
>gi|222642048|gb|EEE70180.1| hypothetical protein OsJ_30257 [Oryza sativa Japonica Group]
Length = 139
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 94/147 (63%), Gaps = 27/147 (18%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+S+S +++LSV K KA KDPNKPKRP SAFFVFME+FR+ YK+ HP K
Sbjct: 4 RSRSSNGDSRLSVRKT---------KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEA------------DKAPYVAKAEKRKVEYEKDMKNYNRRQ-- 110
V+ +GKAGG+KWKSM++A DKAP+V KAEK K EY K + YN +Q
Sbjct: 55 QVSVIGKAGGDKWKSMTDAIRGYVVVAVPCKDKAPFVTKAEKLKAEYTKKIDAYNNKQAG 114
Query: 111 -PEEEEESEKSMSEVNDEDDDEEGSGE 136
P +S+KS SEVNDED EGSG+
Sbjct: 115 GPATSGDSDKSKSEVNDED---EGSGD 138
>gi|312281849|dbj|BAJ33790.1| unnamed protein product [Thellungiella halophila]
Length = 185
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/100 (65%), Positives = 79/100 (79%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK +A KDPNKPKR SAFFVF+E+FR+ +KK++P K+V+AVGKAGG+KWKSMS+A+K
Sbjct: 41 RKEKRAKKDPNKPKRAPSAFFVFLEDFRQTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVN 125
APY KA KRK EYEK M YN+ E +ESEKS SEVN
Sbjct: 101 APYEEKAAKRKAEYEKLMDAYNKNMEEGSDESEKSRSEVN 140
>gi|295913099|gb|ADG57812.1| transcription factor [Lycoris longituba]
Length = 120
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 82/104 (78%), Gaps = 7/104 (6%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
KA KDPNKPKR SAFFVFME+FR+++K+ +PKNKSVAAVGKAGGE+WKSMS+A+KAP+
Sbjct: 1 AKAGKDPNKPKRAPSAFFVFMEDFRKEFKEKNPKNKSVAAVGKAGGERWKSMSDAEKAPF 60
Query: 89 VAKAEKRKVEYEKDMKNYNRRQPE-------EEEESEKSMSEVN 125
V KAEK K EYEK M YN+ + EEEES+KS SEVN
Sbjct: 61 VKKAEKLKAEYEKKMVAYNKGEKVKDDNADVEEEESDKSKSEVN 104
>gi|224112525|ref|XP_002316220.1| high mobility group family [Populus trichocarpa]
gi|222865260|gb|EEF02391.1| high mobility group family [Populus trichocarpa]
Length = 176
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 88/129 (68%), Gaps = 11/129 (8%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L N+ K +K KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAALKANESSKKRVKKEKITKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEE-----------EESEK 119
KAGGEKWKS+S A+KAPY AKA KRK +YEK M YN++Q ++ E+S K
Sbjct: 89 KAGGEKWKSLSAAEKAPYEAKAAKRKSDYEKLMTAYNKKQDTDDGDDDDNDDDNIEQSHK 148
Query: 120 SMSEVNDED 128
S SEVN ++
Sbjct: 149 SKSEVNGQN 157
>gi|218198917|gb|EEC81344.1| hypothetical protein OsI_24530 [Oryza sativa Indica Group]
Length = 163
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 86/113 (76%), Gaps = 6/113 (5%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V +KPA GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 59
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+K+ +PKNKSVAAVGKA G++WKS++EADKAPYVAKA K K EY + + R
Sbjct: 60 FKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNRPLLPTTR 112
>gi|295913696|gb|ADG58089.1| transcription factor [Lycoris longituba]
Length = 183
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 85/117 (72%), Gaps = 8/117 (6%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPA-----KAGRKSGKAAKDPNKPKRPASAFFVFMEEF 52
MKGGKSK DT +AKLSV +K A K K KA DPNKPKRP SAFFVFMEEF
Sbjct: 22 MKGGKSKPDTSKKADAKLSVKRKAAEKPAKKPAVKKAKAGTDPNKPKRPPSAFFVFMEEF 81
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
R+Q+K+ +P NK V+ VGKA G+KWKSMS A+KAPY AKA KRKV+Y K M YN++
Sbjct: 82 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPYEAKAAKRKVDYNKTMVAYNKK 138
>gi|334185909|ref|NP_001190062.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645337|gb|AEE78858.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 161
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/100 (65%), Positives = 78/100 (78%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+K
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVN 125
APY KA KRK EYEK M YN+ E +ESEKS SE+N
Sbjct: 101 APYEEKAAKRKAEYEKQMDAYNKNLEEGSDESEKSRSEIN 140
>gi|351725417|ref|NP_001235556.1| uncharacterized protein LOC100305961 [Glycine max]
gi|255627113|gb|ACU13901.1| unknown [Glycine max]
Length = 169
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/98 (64%), Positives = 79/98 (80%), Gaps = 2/98 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP SAF VF+EEFR+ +K ++P K+V+ VGKAGGEKWKS+S A+KAPY AKA
Sbjct: 49 DPNKPKRPPSAFLVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAA 108
Query: 94 KRKVEYEKDMKNYNRRQPE--EEEESEKSMSEVNDEDD 129
KRK EYEK +K Y ++Q +++ES+KS SEVNDEDD
Sbjct: 109 KRKAEYEKLIKAYEKKQASSADDDESDKSKSEVNDEDD 146
>gi|295913113|gb|ADG57819.1| transcription factor [Lycoris longituba]
Length = 108
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/108 (65%), Positives = 82/108 (75%), Gaps = 2/108 (1%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKK 58
MKG K K+ + A KL+V K K K KA KDPNKPKR ASAFFVFME FR+++K+
Sbjct: 1 MKGRKPKASSTKATDKLAVKKGAPKKTEKKVKAGKDPNKPKRAASAFFVFMEGFRKEFKE 60
Query: 59 DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
+PKNKSVAAVGKAGGEKWKSMS+A+KAP+V KAEK K EYEK M Y
Sbjct: 61 KNPKNKSVAAVGKAGGEKWKSMSDAEKAPFVKKAEKLKAEYEKKMVAY 108
>gi|13877775|gb|AAK43965.1|AF370150_1 putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 97/138 (70%), Gaps = 9/138 (6%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE----EEE 115
+P NKSVA VGKA G +WK+M++ DKAPYVAKAE K EY K+++ YN + EE+
Sbjct: 57 NPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESIKTEYIKNVQQYNLKLASGTNREED 116
Query: 116 ESEKSMSEVNDEDDDEEG 133
+S+KS SEV++ +EE
Sbjct: 117 DSDKSKSEVDEAVSEEEA 134
>gi|295913708|gb|ADG58095.1| transcription factor [Lycoris longituba]
Length = 190
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 83/117 (70%), Gaps = 8/117 (6%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 29 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 88
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
R+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN++
Sbjct: 89 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKK 145
>gi|295913458|gb|ADG57979.1| transcription factor [Lycoris longituba]
Length = 179
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 83/117 (70%), Gaps = 8/117 (6%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 19 MKGGKSKADTSKKADARLSVKRKAAEKPAKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 78
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
R+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN++
Sbjct: 79 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKK 135
>gi|116790306|gb|ABK25570.1| unknown [Picea sitchensis]
gi|224286844|gb|ACN41125.1| unknown [Picea sitchensis]
gi|294461904|gb|ADE76508.1| unknown [Picea sitchensis]
Length = 151
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/96 (64%), Positives = 79/96 (82%), Gaps = 4/96 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP SAFFVF++EFR++YK+ +P SV+AVGKAGGEKW+++S+A+KAPYVAKAE
Sbjct: 42 DPNKPKRPPSAFFVFLDEFRKEYKQANPNANSVSAVGKAGGEKWRALSDAEKAPYVAKAE 101
Query: 94 KRKVEYEKDMKNYNRRQ----PEEEEESEKSMSEVN 125
K+K EYEK M YN+++ E EES+KS SEVN
Sbjct: 102 KKKAEYEKSMATYNKQKDSNTEEVAEESDKSKSEVN 137
>gi|295913526|gb|ADG58011.1| transcription factor [Lycoris longituba]
Length = 171
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 83/117 (70%), Gaps = 8/117 (6%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 14 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 73
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
R+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN++
Sbjct: 74 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKK 130
>gi|295913196|gb|ADG57857.1| transcription factor [Lycoris longituba]
Length = 143
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 81/103 (78%), Gaps = 7/103 (6%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
KA KDPNKPKRP SAFFVFME FR+++K +PKNKS+AAVGKAGGE+WKSMS+++KAP+V
Sbjct: 25 KAGKDPNKPKRPPSAFFVFMEGFRKEFKDKNPKNKSIAAVGKAGGERWKSMSDSEKAPFV 84
Query: 90 AKAEKRKVEYEKDMKNYNRRQP-------EEEEESEKSMSEVN 125
+KAEK K EY K M +N+ + EEEES+KS SEVN
Sbjct: 85 SKAEKLKAEYGKKMNAHNKGEKLRDDNAELEEEESDKSKSEVN 127
>gi|295913393|gb|ADG57949.1| transcription factor [Lycoris longituba]
Length = 162
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 85/117 (72%), Gaps = 8/117 (6%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPA-----KAGRKSGKAAKDPNKPKRPASAFFVFMEEF 52
MKGGKSK DT +AKLSV +K A K K KA DPNKPKRP SAFFVFMEEF
Sbjct: 1 MKGGKSKPDTSKKADAKLSVKRKAAEKPAKKPAVKKAKAGTDPNKPKRPPSAFFVFMEEF 60
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
R+Q+K+ +P NK V+ VGKA G+KWKSMS A+KAPY AKA KRKV+Y K M YN++
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPYEAKAAKRKVDYNKTMVAYNKK 117
>gi|295913700|gb|ADG58091.1| transcription factor [Lycoris longituba]
Length = 162
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 83/117 (70%), Gaps = 8/117 (6%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 1 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 60
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
R+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN++
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKK 117
>gi|295913475|gb|ADG57987.1| transcription factor [Lycoris longituba]
Length = 162
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 83/117 (70%), Gaps = 8/117 (6%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 1 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPVVKKAKEGKDPNKPKRPPSAFFVFMEEF 60
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
R+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN++
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKK 117
>gi|413935042|gb|AFW69593.1| high mobility group protein1 [Zea mays]
Length = 220
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/161 (53%), Positives = 108/161 (67%), Gaps = 20/161 (12%)
Query: 1 MKGGKSKSDTR-NAKLSVNKK----PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V K PAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 58
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEE 115
+K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K + YN+ + +
Sbjct: 59 FKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAK 118
Query: 116 ES-------------EKSMSEVNDEDDDEEGSGEVFFWGCF 143
++ +KS SEVNDEDD+E + C
Sbjct: 119 KAPAKEEEEEDEEESDKSKSEVNDEDDEEGSEEVYKIYSCL 159
>gi|346467547|gb|AEO33618.1| hypothetical protein [Amblyomma maculatum]
Length = 146
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/103 (63%), Positives = 82/103 (79%), Gaps = 7/103 (6%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
KAAKDPNKPKR SAFFVF++EFR+++K+ +P+NKSVAAV KAGG +WKSMS+ADK PYV
Sbjct: 34 KAAKDPNKPKRAPSAFFVFLDEFRKEFKEKNPENKSVAAVTKAGGARWKSMSDADKEPYV 93
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEE-------EEESEKSMSEVN 125
+KA+K KVEY+K +K Y + Q E +EES+KS SEVN
Sbjct: 94 SKADKLKVEYQKKVKAYEKGQAHEPEDNAEMDEESDKSKSEVN 136
>gi|357159916|ref|XP_003578598.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 128
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 88/131 (67%), Gaps = 12/131 (9%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+ +S +++LSV K KA KDPN+PKRP SAFFVFME FR+ YK+ HP K
Sbjct: 4 RVRSSGGDSRLSVRKT---------KAEKDPNQPKRPPSAFFVFMEGFRKDYKEKHPDVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEE---ESEKSM 121
V+ VGKAGG +WKS+S+A+KAP+VAKAEK K EY K M YN Q +E +S+KS
Sbjct: 55 QVSVVGKAGGAEWKSLSDAEKAPFVAKAEKLKAEYNKKMVAYNNPQAGGQEASGDSDKSK 114
Query: 122 SEVNDEDDDEE 132
SEVNDE D E
Sbjct: 115 SEVNDEADGSE 125
>gi|225448400|ref|XP_002270185.1| PREDICTED: high mobility group B protein 1 isoform 2 [Vitis
vinifera]
Length = 156
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/100 (65%), Positives = 77/100 (77%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L +K K +K A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
KAGGEKWKS+SEADKAPY AKA KRK +YEK M YN++Q
Sbjct: 89 KAGGEKWKSLSEADKAPYEAKAAKRKSDYEKLMAAYNKKQ 128
>gi|414886617|tpg|DAA62631.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 119
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 85/122 (69%), Gaps = 12/122 (9%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSTAGDSRLSVRKT---------KAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEESEKSM 121
V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN +Q P +S+KS
Sbjct: 55 QVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSK 114
Query: 122 SE 123
SE
Sbjct: 115 SE 116
>gi|414590133|tpg|DAA40704.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 140
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 84/123 (68%), Gaps = 13/123 (10%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K K KDPNKPKRP +AFFVFMEEFR+ YK+ HP K
Sbjct: 24 RARSGGGDSRLSVRKT---------KVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVK 74
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ----PEEEEESEKS 120
V+ +GKAGG+ WKS+S+A+KAPYV+KAEK KVEY K M YN +Q P +S+KS
Sbjct: 75 QVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKS 134
Query: 121 MSE 123
SE
Sbjct: 135 KSE 137
>gi|224098541|ref|XP_002311212.1| high mobility group family [Populus trichocarpa]
gi|222851032|gb|EEE88579.1| high mobility group family [Populus trichocarpa]
Length = 179
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 89/137 (64%), Gaps = 9/137 (6%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L + K K KDP+KPKRP S+FFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAALKATESSKKRAAKEKITKKDPDKPKRPPSSFFVFLEEFRKIYKQEHPNMKAVSAVG 88
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEE---------EESEKSM 121
KAGGEKWKSMS A+KAPY AKA +K +Y K M Y+++Q ++ + S +S
Sbjct: 89 KAGGEKWKSMSAAEKAPYEAKAAIKKSDYGKLMTAYSKKQETDDGGADEEDDYKHSHRSK 148
Query: 122 SEVNDEDDDEEGSGEVF 138
SEV+ +DD +E G +F
Sbjct: 149 SEVDGQDDSDESVGVIF 165
>gi|414590134|tpg|DAA40705.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 120
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 84/123 (68%), Gaps = 13/123 (10%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K K KDPNKPKRP +AFFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSGGGDSRLSVRKT---------KVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ----PEEEEESEKS 120
V+ +GKAGG+ WKS+S+A+KAPYV+KAEK KVEY K M YN +Q P +S+KS
Sbjct: 55 QVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKS 114
Query: 121 MSE 123
SE
Sbjct: 115 KSE 117
>gi|359386154|gb|AEV43366.1| group B HMG-box protein [Citrus sinensis]
Length = 165
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 77/100 (77%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L ++ K + A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
KAGGEKWKS+++A+KAP+ AKA KRK++YEK M YN++Q
Sbjct: 89 KAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQ 128
>gi|302803281|ref|XP_002983394.1| hypothetical protein SELMODRAFT_117986 [Selaginella moellendorffii]
gi|300149079|gb|EFJ15736.1| hypothetical protein SELMODRAFT_117986 [Selaginella moellendorffii]
Length = 123
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 80/103 (77%), Gaps = 5/103 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+PK+PA+AFF+F+EEFR+ YKKDHP K VAA+GKAGG+ WKS+S+ +K PY AKA
Sbjct: 18 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLSDKEKEPYHAKAA 77
Query: 94 KRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDE----DDDEE 132
KRK +Y+KD++ YN+++ EEEE+ SEV + DDDEE
Sbjct: 78 KRKADYDKDLEAYNKKK-EEEEDGSAGESEVKSKSAGNDDDEE 119
>gi|407971018|ref|NP_001238631.1| uncharacterized protein LOC100499704 [Glycine max]
gi|255625939|gb|ACU13314.1| unknown [Glycine max]
Length = 166
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/94 (63%), Positives = 77/94 (81%), Gaps = 2/94 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP SAFFVF+EEFR+ +K ++P K+V+ VGKAGGEKWKS+S A+KAPY +KA
Sbjct: 49 DPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSVVGKAGGEKWKSLSSAEKAPYESKAA 108
Query: 94 KRKVEYEKDMKNYNRRQPE--EEEESEKSMSEVN 125
KRK EYEK +K Y+++Q ++EES+KS SEVN
Sbjct: 109 KRKAEYEKLIKAYDKKQASSADDEESDKSKSEVN 142
>gi|414886615|tpg|DAA62629.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 123
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 77/107 (71%), Gaps = 9/107 (8%)
Query: 4 GKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP
Sbjct: 3 SRARSTAGDSRLSVRK---------TKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNV 53
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
K V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN +Q
Sbjct: 54 KQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNNKQ 100
>gi|414886614|tpg|DAA62628.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 118
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 77/107 (71%), Gaps = 9/107 (8%)
Query: 4 GKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP
Sbjct: 3 SRARSTAGDSRLSVRK---------TKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNV 53
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
K V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN +Q
Sbjct: 54 KQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNNKQ 100
>gi|118484946|gb|ABK94338.1| unknown [Populus trichocarpa]
Length = 171
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 87/134 (64%), Gaps = 9/134 (6%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L + K K KDP+KPKRP S+FFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAALKATESSKKRAAKEKITKKDPDKPKRPPSSFFVFLEEFRKIYKQEHPNMKAVSAVG 88
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEE---------EESEKSM 121
KAGGEKWKSMS A+KAPY AKA +K +Y K M Y+++Q ++ + S +S
Sbjct: 89 KAGGEKWKSMSAAEKAPYEAKAAIKKSDYGKLMTAYSKKQETDDGGADEEDDYKHSHRSK 148
Query: 122 SEVNDEDDDEEGSG 135
SEV+ +DD +E G
Sbjct: 149 SEVDGQDDSDESVG 162
>gi|116781378|gb|ABK22074.1| unknown [Picea sitchensis]
gi|224284710|gb|ACN40086.1| unknown [Picea sitchensis]
Length = 154
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 81/116 (69%), Gaps = 6/116 (5%)
Query: 15 LSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGG 74
LS +KP K K KA KDPN+PKRP +AFFV++EEFR+ +K+ HP K V AVGKA G
Sbjct: 26 LSAKEKPNKRQAKP-KAVKDPNQPKRPPTAFFVYLEEFRKTFKQKHPDVKGVTAVGKACG 84
Query: 75 EKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR-----QPEEEEESEKSMSEVN 125
+KWK MSEA+KAPY+AKA +++ EY+ M Y ++ Q EESEKS SE+N
Sbjct: 85 DKWKEMSEAEKAPYLAKAAQKRAEYDVTMTAYKKKQEVGVQSATPEESEKSKSELN 140
>gi|302754440|ref|XP_002960644.1| hypothetical protein SELMODRAFT_75453 [Selaginella moellendorffii]
gi|300171583|gb|EFJ38183.1| hypothetical protein SELMODRAFT_75453 [Selaginella moellendorffii]
Length = 134
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 75/99 (75%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+PK+PA+AFF+F+EEFR+ YKKDHP K VAA+GKAGG+ WKS+S+ +K PY AKA
Sbjct: 32 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLSDKEKEPYHAKAA 91
Query: 94 KRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEE 132
KRK +Y+KD++ YN+++ + + S+ DDDEE
Sbjct: 92 KRKADYDKDLEAYNKKKEDGSAGESEVKSKSAGNDDDEE 130
>gi|18419623|gb|AAL69379.1|AF462216_1 HMG-domain containing protein [Narcissus pseudonarcissus]
Length = 106
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 78/106 (73%), Gaps = 8/106 (7%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPA-----KAGRKSGKAAKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A K K KA KDPNKPKRP SAFFVFMEEF
Sbjct: 1 MKGGKSKADTSKKADARLSVKRKAAEKPAKKPVVKKSKAEKDPNKPKRPPSAFFVFMEEF 60
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
R+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK E
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAE 106
>gi|4468042|emb|CAB37859.1| unnamed protein product [Vicia faba var. minor]
Length = 74
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 63/74 (85%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPNKPKRP SAFFVFM +FREQYKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A
Sbjct: 1 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRA 60
Query: 93 EKRKVEYEKDMKNY 106
K+K EYE ++ Y
Sbjct: 61 LKKKEEYEITLQAY 74
>gi|729738|sp|P40621.1|HMGL_WHEAT RecName: Full=HMG1/2-like protein
gi|21803|emb|CAA77641.1| high mobility group protein [Triticum aestivum]
gi|114145392|dbj|BAF30985.1| high mobility globular protein [Triticum aestivum]
Length = 161
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 84/112 (75%), Gaps = 4/112 (3%)
Query: 1 MKGGKSKSDTR-NAKLSVNKKPA---KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQY 56
MKG KSK + +AKL+V K A A K GKA KDPNKPKR SAFFVFM EFRE++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEF 60
Query: 57 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
K+ +PKNKSVAAVGKA GE+WKS+SE++KAPYVAKA K K EY K + YN+
Sbjct: 61 KQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112
>gi|255571919|ref|XP_002526902.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223533801|gb|EEF35533.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 190
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 94/148 (63%), Gaps = 13/148 (8%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R+A L NK K +K A KDPN+PKRP SAFFVF+E+FR+ YK++HP K+V+AVG
Sbjct: 29 RSAALKPNKNSKKVTKKDKPAKKDPNRPKRPPSAFFVFLEDFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSM----SEVND 126
KAGGEKWKSMS A+K+P+ AKA KRK +YEK M YN++Q +++ + S++
Sbjct: 89 KAGGEKWKSMSNAEKSPFEAKAAKRKSDYEKLMTAYNKKQESGDDQDDGDEESDGSKIEA 148
Query: 127 EDDDEEGSGEVFF---------WGCFDF 145
DDEE + + CFDF
Sbjct: 149 SRDDEESAEAIPLSPFKSLHRRICCFDF 176
>gi|357506009|ref|XP_003623293.1| HMG1/2-like protein [Medicago truncatula]
gi|355498308|gb|AES79511.1| HMG1/2-like protein [Medicago truncatula]
gi|388511215|gb|AFK43669.1| unknown [Medicago truncatula]
Length = 170
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 79/99 (79%), Gaps = 3/99 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP SAFFVF+E+FR+ +K ++P K+V+AVGKAGGEKWKS+++A+KAPY AKA
Sbjct: 47 DPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAA 106
Query: 94 KRKVEYEKDMKNYNRRQPEEEEESEKSM---SEVNDEDD 129
KRKVEYEK M YN + +++ E+S SEVN+ED+
Sbjct: 107 KRKVEYEKLMNAYNNKPSSADDDEEESDKDNSEVNNEDE 145
>gi|950053|emb|CAA90679.1| HMG1/2-like protein [Hordeum vulgare subsp. vulgare]
Length = 160
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 84/112 (75%), Gaps = 4/112 (3%)
Query: 1 MKGGKSKSDTR-NAKLSVNKKPA---KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQY 56
MKG KSK + + KL+V K A A K GKA KDPNKPKR SAFFVFM EFRE++
Sbjct: 1 MKGAKSKGAAKADTKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEF 60
Query: 57 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
K+ +PKNKSVAAVGKA GE+WKS+SE++KAP+VAKA K K EY K + +YN+
Sbjct: 61 KQKNPKNKSVAAVGKAAGERWKSLSESEKAPFVAKANKLKGEYNKAIASYNK 112
>gi|388522261|gb|AFK49192.1| unknown [Lotus japonicus]
Length = 173
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 76/98 (77%), Gaps = 4/98 (4%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
RP SAFFVF+E+FR+ +K ++P K V+AVGKAGGEKWKS+++A+KAPY AKA KRK EY
Sbjct: 52 RPPSAFFVFLEDFRKTFKAENPNVKGVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKAEY 111
Query: 100 EKDMKNYNRRQP----EEEEESEKSMSEVNDEDDDEEG 133
EK + YN +Q + +EES+KS SE+NDE+D+ G
Sbjct: 112 EKLINAYNNKQASTADDVDEESDKSKSEINDEEDEASG 149
>gi|449468356|ref|XP_004151887.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449517965|ref|XP_004166014.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
Length = 142
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 86/141 (60%), Gaps = 20/141 (14%)
Query: 11 RNAKLSVNKKP-------AKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKDHPK 62
RNA + +KKP KA KS K+ K D N PKRPA+ FFVFMEEFR+ YK+ P
Sbjct: 5 RNA-VVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPD 63
Query: 63 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY--------NRRQPEEE 114
K+ VGK GGEKWKSMS+A+KAPY KA KRK EYE ++ Y N R P
Sbjct: 64 AKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMP--- 120
Query: 115 EESEKSMSEVNDEDDDEEGSG 135
ES+KS SEVND+ + E S
Sbjct: 121 TESQKSTSEVNDDTEQEASSS 141
>gi|255566393|ref|XP_002524182.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223536551|gb|EEF38197.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 155
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 70/87 (80%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+ RK +KD + PKRPASAFF+FM+EFR+ +K+ +P NK+V+AVGKAGGEKWKS+SE
Sbjct: 34 SSRKKKNVSKDTDAPKRPASAFFIFMDEFRKYFKEKYPDNKAVSAVGKAGGEKWKSLSET 93
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
DKAPY+ KA KRK EYEK ++ Y +++
Sbjct: 94 DKAPYLEKALKRKAEYEKVLEAYKQQK 120
>gi|157382898|gb|ABV48884.1| high mobility group protein B2 [Physcomitrella patens]
Length = 165
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 64/77 (83%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRPA+AFF+F+ EFRE +KK++P K VAAVGKAGGEKWKSMSEA+K PY+ KA
Sbjct: 53 DPNAPKRPATAFFIFLNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEAEKQPYMQKAV 112
Query: 94 KRKVEYEKDMKNYNRRQ 110
++K EY+K + YN++Q
Sbjct: 113 QKKSEYDKTLSAYNKKQ 129
>gi|388497798|gb|AFK36965.1| unknown [Medicago truncatula]
Length = 170
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 78/99 (78%), Gaps = 3/99 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP SAFFVF+E+FR+ +K ++P K+V+AVGKAGG KWKS+++A+KAPY AKA
Sbjct: 47 DPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGGKWKSLTKAEKAPYEAKAV 106
Query: 94 KRKVEYEKDMKNYNRRQPEEEEESEKSM---SEVNDEDD 129
KRKVEYEK M YN + +++ E+S SEVN+ED+
Sbjct: 107 KRKVEYEKLMDAYNNKPSSADDDEEESDKDNSEVNNEDE 145
>gi|168028752|ref|XP_001766891.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681870|gb|EDQ68293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 160
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 64/77 (83%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRPA+AFF+F+ EFRE +KK++P K VAAVGKAGGEKWKSMSEA+K PY+ KA
Sbjct: 53 DPNAPKRPATAFFIFLNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEAEKQPYMQKAV 112
Query: 94 KRKVEYEKDMKNYNRRQ 110
++K EY+K + YN++Q
Sbjct: 113 QKKSEYDKTLSAYNKKQ 129
>gi|106879575|emb|CAJ38371.1| HMG-protein [Plantago major]
Length = 212
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 72/90 (80%), Gaps = 4/90 (4%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
RP SAFFVF+EEFR+ +KK++P K+V+AVGKAGGEKWKS+++A+KAPY AKA KRK EY
Sbjct: 101 RPPSAFFVFLEEFRQTFKKENPNIKAVSAVGKAGGEKWKSLTDAEKAPYEAKAAKRKSEY 160
Query: 100 EKDMKNYNRRQP----EEEEESEKSMSEVN 125
EK M YN++Q E +E SEKS SEV+
Sbjct: 161 EKLMNAYNKKQESSADEADEGSEKSRSEVH 190
>gi|125583208|gb|EAZ24139.1| hypothetical protein OsJ_07880 [Oryza sativa Japonica Group]
Length = 170
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 83/123 (67%), Gaps = 11/123 (8%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
S+ K AG++ K A KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GE
Sbjct: 38 SMLKAAGGAGKR--KKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGE 95
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP---------EEEEESEKSMSEVND 126
KW++MSE +KAPYV KA ++K +YEK N+++++ ++ E S+KS SEV+D
Sbjct: 96 KWRAMSEQEKAPYVDKAGQKKQDYEKTKANFDKKESTSSKKAKTHDDGEGSDKSKSEVDD 155
Query: 127 EDD 129
+ D
Sbjct: 156 DQD 158
>gi|18700443|dbj|BAB85204.1| high mobility group box protein 2 [Oryza sativa Japonica Group]
gi|125540625|gb|EAY87020.1| hypothetical protein OsI_08417 [Oryza sativa Indica Group]
Length = 145
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 74/103 (71%), Gaps = 9/103 (8%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GEKW++MSE +KAPYV KA ++
Sbjct: 31 GKPKRPPSAFFVFMSEFRQEYQAAHPGNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQK 90
Query: 96 KVEYEKDMKNYNRRQP---------EEEEESEKSMSEVNDEDD 129
K +YEK N+++++ ++ E S+KS SEV+D+ D
Sbjct: 91 KQDYEKTKANFDKKESTSSKKAKTHDDGEGSDKSKSEVDDDQD 133
>gi|115447831|ref|NP_001047695.1| Os02g0670400 [Oryza sativa Japonica Group]
gi|50251344|dbj|BAD28320.1| putative high mobility group protein [Oryza sativa Japonica Group]
gi|50252158|dbj|BAD28154.1| putative high mobility group protein [Oryza sativa Japonica Group]
gi|113537226|dbj|BAF09609.1| Os02g0670400 [Oryza sativa Japonica Group]
Length = 145
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 74/103 (71%), Gaps = 9/103 (8%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GEKW++MSE +KAPYV KA ++
Sbjct: 31 GKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQK 90
Query: 96 KVEYEKDMKNYNRRQP---------EEEEESEKSMSEVNDEDD 129
K +YEK N+++++ ++ E S+KS SEV+D+ D
Sbjct: 91 KQDYEKTKANFDKKESTSSKKAKTHDDGEGSDKSKSEVDDDQD 133
>gi|357136925|ref|XP_003570053.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 144
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 72/97 (74%), Gaps = 8/97 (8%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
RP SAFFVFM EFR++Y+ +HP NKSVA V KA GEKW+SMS+ADKAPYV KA ++K +Y
Sbjct: 36 RPPSAFFVFMSEFRQEYQAEHPNNKSVANVSKAAGEKWRSMSDADKAPYVEKAGQKKQDY 95
Query: 100 EKDMKNYNRRQ--------PEEEEESEKSMSEVNDED 128
EK +++++ +++E S+KS SEV+DED
Sbjct: 96 EKTKATFDKKESTSSKKTKTQDDEGSDKSKSEVDDED 132
>gi|47027098|gb|AAT08762.1| HMG transcription factor [Hyacinthus orientalis]
Length = 158
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 80/117 (68%), Gaps = 9/117 (7%)
Query: 5 KSKSDTRN---AKLSVNKKPAKAGRKSGKA------AKDPNKPKRPASAFFVFMEEFREQ 55
KSK+DT N AKLSV +K A+ K KDPNKPKRP SAFFVFME+FR+Q
Sbjct: 1 KSKADTSNKADAKLSVKRKAAEKPAKKPAPAKKSKAVKDPNKPKRPPSAFFVFMEDFRKQ 60
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
+K+ +P NK V+ VGKA KWK+MS A+KAP+ A+A KRK +Y K M YN++Q E
Sbjct: 61 FKEKNPNNKQVSVVGKACWGKWKTMSAAEKAPFEARAAKRKADYNKVMVAYNKKQSE 117
>gi|157382900|gb|ABV48885.1| high mobility group protein B3 [Physcomitrella patens]
Length = 158
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 72/97 (74%), Gaps = 5/97 (5%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP +AFF+F+ EFRE +K+++P K V AVGKAGGEKWKSMSEA+K P++ KA
Sbjct: 49 DPNAPKRPPTAFFIFLNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEAEKQPFMTKAV 108
Query: 94 KRKVEYEKDMKNYNRRQ-----PEEEEESEKSMSEVN 125
++K EY+K + YN++Q E EES+K SE+N
Sbjct: 109 QKKSEYDKTISAYNKKQDEDAEEVEAEESDKCKSEIN 145
>gi|302796105|ref|XP_002979815.1| hypothetical protein SELMODRAFT_18312 [Selaginella moellendorffii]
gi|302807533|ref|XP_002985461.1| hypothetical protein SELMODRAFT_18313 [Selaginella moellendorffii]
gi|300146924|gb|EFJ13591.1| hypothetical protein SELMODRAFT_18313 [Selaginella moellendorffii]
gi|300152575|gb|EFJ19217.1| hypothetical protein SELMODRAFT_18312 [Selaginella moellendorffii]
Length = 84
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 63/84 (75%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+K KA+KDPN PKRP +AFFVF+E FR+QYK+DHP K VAAVGKA G+KW MSE++K
Sbjct: 1 KKEKKASKDPNLPKRPPTAFFVFLESFRQQYKEDHPDVKGVAAVGKAAGDKWSKMSESEK 60
Query: 86 APYVAKAEKRKVEYEKDMKNYNRR 109
A YV KA + + +Y + M Y ++
Sbjct: 61 AVYVNKAAQLRADYAESMAAYKKK 84
>gi|195619220|gb|ACG31440.1| HMG1/2-like protein [Zea mays]
Length = 139
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 70/97 (72%), Gaps = 5/97 (5%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SAFFVFM EFR+QY+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K
Sbjct: 32 KPKRPPSAFFVFMSEFRQQYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKK 91
Query: 97 VEYEKDMKNYNRRQPE-----EEEESEKSMSEVNDED 128
+YEK N+++++ + E+ + S SEV+DED
Sbjct: 92 QDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDED 128
>gi|15237040|ref|NP_195282.1| high mobility group B5 protein [Arabidopsis thaliana]
gi|75219649|sp|O49597.1|HMGB5_ARATH RecName: Full=High mobility group B protein 5; AltName: Full=High
mobility group protein D; Short=AtHMGdelta; Short=HMG
delta; AltName: Full=Nucleosome/chromatin assembly
factor group D 05; Short=Nucleosome/chromatin assembly
factor group D 5
gi|2832363|emb|CAA74404.1| HMG protein [Arabidopsis thaliana]
gi|3367575|emb|CAA20027.1| HMG delta protein [Arabidopsis thaliana]
gi|7270508|emb|CAB80273.1| HMG delta protein [Arabidopsis thaliana]
gi|21553743|gb|AAM62836.1| HMG delta protein [Arabidopsis thaliana]
gi|98961063|gb|ABF59015.1| At4g35570 [Arabidopsis thaliana]
gi|222423786|dbj|BAH19859.1| AT4G35570 [Arabidopsis thaliana]
gi|332661132|gb|AEE86532.1| high mobility group B5 protein [Arabidopsis thaliana]
Length = 125
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 63/83 (75%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G K GK KDPN+PK+P S FFVF+++FR+++ +P NKSV VG+A G+KWK+M+E +
Sbjct: 21 GNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEE 80
Query: 85 KAPYVAKAEKRKVEYEKDMKNYN 107
+AP+VAK++ +K EY M+ YN
Sbjct: 81 RAPFVAKSQSKKTEYAVTMQQYN 103
>gi|116785888|gb|ABK23898.1| unknown [Picea sitchensis]
Length = 220
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 78/122 (63%), Gaps = 10/122 (8%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
R K A+DPN+PK+PA+AFFVFM++FR+ YK+ +P K A VGK GG KWK+MS+ DK
Sbjct: 96 RTREKKARDPNQPKKPATAFFVFMDDFRKTYKETNPDVKGAAQVGKEGGLKWKAMSDEDK 155
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQPEE--------EEESEKSMS--EVNDEDDDEEGSG 135
PY+ KA + K EYEK M Y + +E E+E KS + +VNDE+ + G G
Sbjct: 156 KPYLEKAAELKAEYEKAMSKYQQDLKDEAAKSSDGGEDEVAKSDADGDVNDEEANSNGDG 215
Query: 136 EV 137
E
Sbjct: 216 EA 217
>gi|357508231|ref|XP_003624404.1| High mobility group protein [Medicago truncatula]
gi|355499419|gb|AES80622.1| High mobility group protein [Medicago truncatula]
Length = 144
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 64/80 (80%), Gaps = 1/80 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
KA DP+KPKRP S FF+FM +FR +++K++P NK V+ VGKA GEKW+SMS+ DKAPYV
Sbjct: 5 KAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSD-DKAPYV 63
Query: 90 AKAEKRKVEYEKDMKNYNRR 109
A AEK+K+EY K + YN++
Sbjct: 64 ADAEKKKMEYVKAIHAYNKK 83
>gi|1845195|emb|CAA69605.1| HMGc1 [Zea mays]
gi|5441504|emb|CAB46753.1| HMGc1 protein [Zea mays]
gi|194690322|gb|ACF79245.1| unknown [Zea mays]
gi|194704052|gb|ACF86110.1| unknown [Zea mays]
gi|219885481|gb|ACL53115.1| unknown [Zea mays]
gi|413938184|gb|AFW72735.1| HMG-like nucleosome/chromatin assembly factor D isoform 1 [Zea
mays]
gi|413938185|gb|AFW72736.1| HMG-like nucleosome/chromatin assembly factor D isoform 2 [Zea
mays]
Length = 139
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 70/97 (72%), Gaps = 5/97 (5%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SAFFVFM EFR++Y+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKK 91
Query: 97 VEYEKDMKNYNRRQPE-----EEEESEKSMSEVNDED 128
+YEK N+++++ + E+ + S SEV+DED
Sbjct: 92 QDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDED 128
>gi|302790391|ref|XP_002976963.1| hypothetical protein SELMODRAFT_175895 [Selaginella moellendorffii]
gi|300155441|gb|EFJ22073.1| hypothetical protein SELMODRAFT_175895 [Selaginella moellendorffii]
Length = 156
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
A DPN+PKRPA+AFFVF+EE+R+ +K HP K VAAVGKAGG+ WK ++E +K PY K
Sbjct: 49 AADPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLTEEEKKPYHDK 108
Query: 92 AEKRKVEYEKDMKNYNRRQPEEEEESEK 119
A ++K +YEK + Y ++Q EE+ ++EK
Sbjct: 109 AAQKKADYEKTLTEYKKKQ-EEDAKNEK 135
>gi|371721822|gb|AEX55234.1| HMG transcription factor [Allium sativum]
Length = 115
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 58/72 (80%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKRP SAFFVFME+FR+ +K+ +P NK V+AVGKA G+KWKS++ A+KAPY AKA KRK
Sbjct: 2 PKRPPSAFFVFMEDFRKIFKEKNPDNKQVSAVGKAAGDKWKSLTAAEKAPYEAKAAKRKA 61
Query: 98 EYEKDMKNYNRR 109
EY K M YN++
Sbjct: 62 EYTKTMAAYNKK 73
>gi|302797885|ref|XP_002980703.1| hypothetical protein SELMODRAFT_38818 [Selaginella moellendorffii]
gi|300151709|gb|EFJ18354.1| hypothetical protein SELMODRAFT_38818 [Selaginella moellendorffii]
Length = 83
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 61/81 (75%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A DPN+PKRPA+AFFVF+EE+R+ +K HP K VAAVGKAGG+ WK ++E +K PY
Sbjct: 3 KNAADPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLTEEEKKPYH 62
Query: 90 AKAEKRKVEYEKDMKNYNRRQ 110
KA ++K +YEK + Y ++Q
Sbjct: 63 DKAAQKKADYEKTLTEYKKKQ 83
>gi|162460809|ref|NP_001105483.1| high mobility group protein3 [Zea mays]
gi|1845197|emb|CAA69606.1| HMGc2 [Zea mays]
gi|223947405|gb|ACN27786.1| unknown [Zea mays]
gi|413923414|gb|AFW63346.1| HMGc2 protein [Zea mays]
Length = 138
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 65/98 (66%), Gaps = 11/98 (11%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GEKW+SMSE +K PYV +A ++K
Sbjct: 33 KPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKK 92
Query: 97 VEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGS 134
+YEK N EKS S + DD++GS
Sbjct: 93 QDYEKTKANI-----------EKSTSSKKAKTDDDDGS 119
>gi|295913307|gb|ADG57910.1| transcription factor [Lycoris longituba]
Length = 138
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 61/81 (75%), Gaps = 3/81 (3%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
G KPKRP SAFFVFMEEFR+Q+K+ +P NK V+ VGKA G+KWKSMS A+KAPY
Sbjct: 16 GTDPN---KPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPY 72
Query: 89 VAKAEKRKVEYEKDMKNYNRR 109
AKA KRKV+Y K M YN++
Sbjct: 73 EAKAAKRKVDYNKTMVAYNKK 93
>gi|359484115|ref|XP_002267697.2| PREDICTED: high mobility group B protein 7-like [Vitis vinifera]
gi|147815109|emb|CAN61363.1| hypothetical protein VITISV_034306 [Vitis vinifera]
gi|297742725|emb|CBI35359.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 66/88 (75%), Gaps = 2/88 (2%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KP K+ R + KDPN PKRP +AFF+FM++FR++YK+ +P +K+V+ V K GGEKWKS
Sbjct: 83 KPKKSRR--LRKVKDPNMPKRPPTAFFLFMDDFRKEYKESNPDSKNVSVVAKEGGEKWKS 140
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYN 107
M++ +K PYV KA + K EY+K M+ YN
Sbjct: 141 MTDEEKKPYVDKAAELKAEYDKAMETYN 168
>gi|388511193|gb|AFK43658.1| unknown [Lotus japonicus]
Length = 92
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 62/82 (75%), Gaps = 5/82 (6%)
Query: 49 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
M EFR Q+KKD+P NKSVAAVGKA G KWKSM++A+KAPYVA+AEK K EYEK ++ YN
Sbjct: 1 MSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDAEKAPYVARAEKAKEEYEKTLRAYNN 60
Query: 109 RQPE-----EEEESEKSMSEVN 125
E EEE S+KS SEVN
Sbjct: 61 GLAESKGSAEEEGSDKSKSEVN 82
>gi|162461550|ref|NP_001105075.1| high mobility group box protein2 [Zea mays]
gi|17017394|gb|AAL33651.1|AF440222_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 139
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 69/97 (71%), Gaps = 5/97 (5%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SAFF FM EFR++Y+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K
Sbjct: 32 KPKRPPSAFFAFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKK 91
Query: 97 VEYEKDMKNYNRRQPE-----EEEESEKSMSEVNDED 128
+YEK N+++++ + E+ + S SEV+DED
Sbjct: 92 QDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDED 128
>gi|413935044|gb|AFW69595.1| high mobility group protein1 [Zea mays]
Length = 97
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 71/88 (80%), Gaps = 7/88 (7%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V +KPAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 58
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+K+ +PKNKSVAAVGKA G++WKS+SE+
Sbjct: 59 FKEKNPKNKSVAAVGKAAGDRWKSLSES 86
>gi|194700664|gb|ACF84416.1| unknown [Zea mays]
gi|194701704|gb|ACF84936.1| unknown [Zea mays]
gi|413923412|gb|AFW63344.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
gi|413923413|gb|AFW63345.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 139
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 63/93 (67%), Gaps = 7/93 (7%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GEKW+SMSE +K PYV +A ++K
Sbjct: 33 KPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKK 92
Query: 97 VEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDD 129
+YEK N E+ES S D+DD
Sbjct: 93 QDYEKTKANI-------EKESTSSKKAKTDDDD 118
>gi|168050181|ref|XP_001777538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671023|gb|EDQ57581.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 314
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 56/76 (73%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
AAKD + PKRP SA+F+FME FR+++K +P K V A KAGGEKW SMSE +KAPYVA
Sbjct: 186 AAKDSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMSEEEKAPYVA 245
Query: 91 KAEKRKVEYEKDMKNY 106
+A RK +YE+ M Y
Sbjct: 246 EASVRKGQYEQAMTAY 261
>gi|339716048|gb|AEJ88271.1| putative HMG DNA-binding protein [Wolffia arrhiza]
Length = 148
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 93/133 (69%), Gaps = 8/133 (6%)
Query: 1 MKGG-KSKSDTRNA--KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYK 57
MKGG KSKS+ A +LSV KK K+ K AKDPNKPKR SAFFVF+EEFR++YK
Sbjct: 1 MKGGAKSKSEPTKADSRLSVKKKAPARAAKTAKKAKDPNKPKRAPSAFFVFLEEFRKEYK 60
Query: 58 KDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEE---- 113
+ HP NKSVAAVGKA G KW+SMS++DKAPYV K+ KRK E +K ++Q
Sbjct: 61 EKHPDNKSVAAVGKAAGAKWRSMSDSDKAPYVNKSNKRKAEVQKTAAVNAKKQETSSRAA 120
Query: 114 -EEESEKSMSEVN 125
+++S+KS SEVN
Sbjct: 121 ADDDSDKSKSEVN 133
>gi|157382896|gb|ABV48883.1| high mobility group protein B1 [Physcomitrella patens]
Length = 215
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 56/76 (73%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
AAKD + PKRP SA+F+FME FR+++K +P K V A KAGGEKW SMSE +KAPYVA
Sbjct: 130 AAKDSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMSEEEKAPYVA 189
Query: 91 KAEKRKVEYEKDMKNY 106
+A RK +YE+ M Y
Sbjct: 190 EASVRKGQYEQAMTAY 205
>gi|357484153|ref|XP_003612363.1| HMG1/2-like protein [Medicago truncatula]
gi|355513698|gb|AES95321.1| HMG1/2-like protein [Medicago truncatula]
Length = 94
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 61/79 (77%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K+ SD + A + +K A G K K AKDPNKPKRP SAFFVFM EFRE++KK++P NK
Sbjct: 3 KAVSDAKPADNRLKRKGAGTGTKQSKKAKDPNKPKRPPSAFFVFMSEFRERFKKENPSNK 62
Query: 65 SVAAVGKAGGEKWKSMSEA 83
SVA VGKAGG++WK++S+A
Sbjct: 63 SVAVVGKAGGKEWKALSDA 81
>gi|388499756|gb|AFK37944.1| unknown [Lotus japonicus]
Length = 197
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A + K +DPN+PKRP +AFFVF+++FR+++K+ +P +K V VGK GGEKW++M++
Sbjct: 87 RAKTEKAKKVEDPNQPKRPPTAFFVFLDDFRKEFKEANPGSKDVKRVGKEGGEKWRAMTD 146
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYN 107
+K PY+ K + K EYEK M NYN
Sbjct: 147 EEKKPYLEKVAELKEEYEKAMANYN 171
>gi|359486418|ref|XP_003633441.1| PREDICTED: high mobility group B protein 1 [Vitis vinifera]
Length = 151
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 75/119 (63%), Gaps = 19/119 (15%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L +K K +K A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+
Sbjct: 29 RKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS--- 85
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ----PEEEEESEKSMSEVN 125
ADKAPY AKA KRK +YEK M YN++Q ++EEES++S SEVN
Sbjct: 86 ------------ADKAPYEAKAAKRKSDYEKLMAAYNKKQESMADDDEEESDRSKSEVN 132
>gi|449464956|ref|XP_004150195.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
gi|449531370|ref|XP_004172659.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
Length = 207
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 59/81 (72%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K GK KDPN PKRP +AFF+FM++FR+ YK+ +P +K V V K GGEKWKSM++ +K
Sbjct: 100 KKGKKDKDPNAPKRPPTAFFIFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKK 159
Query: 87 PYVAKAEKRKVEYEKDMKNYN 107
PY KA + K EYEK +++ N
Sbjct: 160 PYQDKAAELKAEYEKALESRN 180
>gi|449521910|ref|XP_004167972.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 112
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 57/73 (78%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A + +K + +K KA KDPNKPKRP SAFFVF+EEFR++YK+++P K+V+AVG
Sbjct: 28 RKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVKAVSAVG 87
Query: 71 KAGGEKWKSMSEA 83
KAGGEKWKS+S A
Sbjct: 88 KAGGEKWKSLSHA 100
>gi|297736623|emb|CBI25494.3| unnamed protein product [Vitis vinifera]
Length = 128
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L +K K +K A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 53 RKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 112
Query: 71 KAGGEKWKSMSEA 83
KAGGEKWKS+SEA
Sbjct: 113 KAGGEKWKSLSEA 125
>gi|351722065|ref|NP_001236719.1| uncharacterized protein LOC100306558 [Glycine max]
gi|255628875|gb|ACU14782.1| unknown [Glycine max]
Length = 209
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP +AFFVF+++FR+ +K+ +P +K V VGK GEKW+SM++ +K PY+ K
Sbjct: 99 DPNMPKRPPTAFFVFLDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMTDEEKKPYLDKVA 158
Query: 94 KRKVEYEKDMKNYNRRQPEEEE 115
+ K EYEK M++Y Q EE++
Sbjct: 159 ELKEEYEKAMESYEAGQDEEDQ 180
>gi|356536465|ref|XP_003536758.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 200
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 59/82 (71%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP +AFF F+++FR+ +K+ +P +K V VGK GEKW+SM++ +K PY+ K
Sbjct: 99 DPNMPKRPPTAFFAFLDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMTDEEKKPYLDKVA 158
Query: 94 KRKVEYEKDMKNYNRRQPEEEE 115
+ K EYEK M++Y Q EE++
Sbjct: 159 ELKAEYEKAMESYEAGQDEEDQ 180
>gi|125559825|gb|EAZ05273.1| hypothetical protein OsI_27476 [Oryza sativa Indica Group]
gi|125559834|gb|EAZ05282.1| hypothetical protein OsI_27485 [Oryza sativa Indica Group]
Length = 204
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 50/63 (79%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KRP +AFF+FM +FR++YK +HP NKSV+AV K GGE+WKSMS+ DK PY+ KA + K
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELK 150
Query: 97 VEY 99
EY
Sbjct: 151 AEY 153
>gi|115474323|ref|NP_001060758.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|38637289|dbj|BAD03552.1| putative HMG type nucleosome/chromatin assembly factor D [Oryza
sativa Japonica Group]
gi|113622727|dbj|BAF22672.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|125601889|gb|EAZ41214.1| hypothetical protein OsJ_25719 [Oryza sativa Japonica Group]
gi|213959174|gb|ACJ54921.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215697671|dbj|BAG91665.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 50/63 (79%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KRP +AFF+FM +FR++YK +HP NKSV+AV K GGE+WKSMS+ DK PY+ KA + K
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELK 150
Query: 97 VEY 99
EY
Sbjct: 151 AEY 153
>gi|293333310|ref|NP_001168929.1| uncharacterized protein LOC100382741 [Zea mays]
gi|223973791|gb|ACN31083.1| unknown [Zea mays]
Length = 204
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 49/61 (80%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SAFFVFM EFR++Y+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKK 91
Query: 97 V 97
+
Sbjct: 92 L 92
>gi|427794389|gb|JAA62646.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 604
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A+D NKPKRP +AF +FM +FR++ P+ VAA+ K GGE+W+SMSE DK PYV
Sbjct: 250 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYV 308
Query: 90 AKAEKRKVEYEKDMKNYNRRQ 110
+ + K++YE++M+ Y R+Q
Sbjct: 309 ERQNEEKMKYEQNMEEYRRKQ 329
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKR +A+ F + +RE+ KK + + GK KW +MS+ DK P+++ A + +
Sbjct: 181 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQPFLSAAARDRE 240
Query: 98 EYEKDMKNY 106
Y+++M Y
Sbjct: 241 RYKREMAVY 249
>gi|427793707|gb|JAA62305.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 529
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A+D NKPKRP +AF +FM +FR++ P+ VAA+ K GGE+W+SMSE DK PYV
Sbjct: 271 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYV 329
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEE 114
+ + K++YE++M+ Y R+Q E
Sbjct: 330 ERQNEEKMKYEQNMEEYRRKQQTAE 354
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKR +A+ F + +RE+ KK + + GK KW +MS+ DK P+++ A + +
Sbjct: 202 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQPFLSAAARDRE 261
Query: 98 EYEKDMKNY 106
Y+++M Y
Sbjct: 262 RYKREMAVY 270
>gi|427793709|gb|JAA62306.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 640
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A+D NKPKRP +AF +FM +FR++ P+ VAA+ K GGE+W+SMSE DK PYV
Sbjct: 286 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYV 344
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEE 114
+ + K++YE++M+ Y R+Q E
Sbjct: 345 ERQNEEKMKYEQNMEEYRRKQQTAE 369
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKR +A+ F + +RE+ KK + + GK KW +MS+ DK P+++ A + +
Sbjct: 217 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQPFLSAAARDRE 276
Query: 98 EYEKDMKNY 106
Y+++M Y
Sbjct: 277 RYKREMAVY 285
>gi|297798364|ref|XP_002867066.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297312902|gb|EFH43325.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 125
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 75/107 (70%), Gaps = 4/107 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MK +++ ++R S + + G K GK KDPNKPK+P S FFVF+++FR ++ +
Sbjct: 1 MKDNQTEVESR----STDDRLKVRGNKGGKKTKDPNKPKKPPSPFFVFLDDFRREFNLAN 56
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
P NKSVA+VGKA G+KWKSM+E DKAP+VAKA+ +K EY M+ YN
Sbjct: 57 PDNKSVASVGKAAGKKWKSMTEEDKAPFVAKAKSKKTEYAATMQQYN 103
>gi|427780835|gb|JAA55869.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 508
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A+D NKPKRP +AF +FM +FR++ P+ VAA+ K GGE+W+SMSE DK PYV
Sbjct: 250 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYV 308
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEE 114
+ + K++YE++M+ Y R+Q E
Sbjct: 309 ERQNEEKMKYEQNMEEYRRKQQTAE 333
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKR +A+ F + +RE+ KK + + GK KW +MS+ DK P+++ A + +
Sbjct: 181 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQPFLSAAARDRE 240
Query: 98 EYEKDMKNY 106
Y+++M Y
Sbjct: 241 RYKREMAVY 249
>gi|357517687|ref|XP_003629132.1| HMG1/2-like protein [Medicago truncatula]
gi|355523154|gb|AET03608.1| HMG1/2-like protein [Medicago truncatula]
Length = 75
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K K+D++ A + +K A AGRK + KAAKDPNKPKRP SAFFVFM +FREQYKKDHP N
Sbjct: 3 KVKADSKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNN 62
Query: 64 KSVAAV 69
KSVAA+
Sbjct: 63 KSVAAL 68
>gi|346472777|gb|AEO36233.1| hypothetical protein [Amblyomma maculatum]
Length = 208
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 53/68 (77%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
NKPKR +AFF+FM++FR++YK+ HP NKSVA+V K GGE+W+SM+ +K PY +A +
Sbjct: 102 NKPKRAPTAFFLFMDDFRKEYKELHPDNKSVASVAKEGGERWRSMTIEEKKPYTDRAAEL 161
Query: 96 KVEYEKDM 103
K EY K++
Sbjct: 162 KAEYVKEI 169
>gi|359481661|ref|XP_002279947.2| PREDICTED: high mobility group B protein 1-like [Vitis vinifera]
gi|147815135|emb|CAN74566.1| hypothetical protein VITISV_023651 [Vitis vinifera]
gi|297740214|emb|CBI30396.3| unnamed protein product [Vitis vinifera]
Length = 168
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 72/90 (80%), Gaps = 4/90 (4%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
RP SAFFVF+EEFR+ +KK++P K+V+AVGKAGGE+WKS+SEA+KAPY AKA K+K EY
Sbjct: 58 RPPSAFFVFLEEFRKVFKKENPNVKAVSAVGKAGGERWKSLSEAEKAPYEAKAAKKKAEY 117
Query: 100 EKDMKNYNRRQPEE----EEESEKSMSEVN 125
EK M YN++Q +EES++S SEVN
Sbjct: 118 EKIMNAYNKKQESTADDGDEESDRSKSEVN 147
>gi|224097317|ref|XP_002310906.1| high mobility group family [Populus trichocarpa]
gi|118483462|gb|ABK93630.1| unknown [Populus trichocarpa]
gi|222853809|gb|EEE91356.1| high mobility group family [Populus trichocarpa]
Length = 201
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+DPN PKRP +AFF+FM++FR++YK+ +P +K V V K GG +WKSM++ +K YV KA
Sbjct: 100 RDPNAPKRPPTAFFLFMDDFRKEYKEANPDSKDVKKVAKEGGVRWKSMTDEEKKQYVDKA 159
Query: 93 EKRKVEYEKDMKNYNRRQPEEE-EESEKSMSEVNDEDDDEE 132
+ K E +K +++ N ++E SEK ++++ D +EE
Sbjct: 160 AELKAENDKALESDNAENEDDEGVSSEKEVADLELRDKEEE 200
>gi|388495062|gb|AFK35597.1| unknown [Lotus japonicus]
Length = 162
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 67/99 (67%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R+A+ + + K KA +K+ K D NKPK+P +AFF F+E+FR++++ +P K++ +G
Sbjct: 43 RSAQQTKSTKKPKAKQKTSKQRIDANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIG 102
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
K+ GEKWK+M+ +K Y A +++ E+++ M YN++
Sbjct: 103 KSCGEKWKTMTYEEKVQYYDIATEKRAEFDRAMTEYNKK 141
>gi|168056739|ref|XP_001780376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668218|gb|EDQ54830.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 59/82 (71%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRPAS F VFME FR+ YK +P++K VAA KAGGEKWK M+E ++APY AE
Sbjct: 107 DPNAPKRPASGFLVFMESFRKTYKDANPESKGVAAAAKAGGEKWKQMTEEERAPYNKDAE 166
Query: 94 KRKVEYEKDMKNYNRRQPEEEE 115
RK+ YE+ M NY + P+ +E
Sbjct: 167 ARKLNYEQAMTNYKNKGPKNDE 188
>gi|357135842|ref|XP_003569517.1| PREDICTED: high mobility group B protein 14-like [Brachypodium
distachyon]
Length = 127
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
S KP RK G DP +PK+P +AFF FME+FR+++K ++P KS+ +G+A GE
Sbjct: 22 SPRTKPRPEPRKKGTVG-DPRRPKKPPTAFFYFMEDFRDKFKAENPSVKSMQDIGRACGE 80
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
KW M+ +K Y A +R+ E+EK M YN+++
Sbjct: 81 KWNKMAFEEKVKYYDLATERRAEFEKAMAQYNKKK 115
>gi|195618458|gb|ACG31059.1| HMG1/2-like protein [Zea mays]
gi|195640852|gb|ACG39894.1| HMG1/2-like protein [Zea mays]
gi|223975443|gb|ACN31909.1| unknown [Zea mays]
gi|413925109|gb|AFW65041.1| HMG type nucleosome/chromatin assembly factor DNucleasome/chromatin
assembly factor D protein NFD106 [Zea mays]
Length = 212
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KR +AFF+FM++FR+++K HP NKSVA V K GGE+WKSM++ +K PY+ KA + K
Sbjct: 91 KRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVAKEGGERWKSMTDEEKKPYIEKAAELK 150
Query: 97 VEYE 100
E E
Sbjct: 151 AEAE 154
>gi|242080163|ref|XP_002444850.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
gi|241941200|gb|EES14345.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
Length = 221
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 59/91 (64%), Gaps = 6/91 (6%)
Query: 15 LSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
+ V KPA+ + S K KD K KR +AFF+FM++FR+++K HP NKSVA V
Sbjct: 70 VEVAAKPAERNKSSAKGHGGGGNKDA-KRKRSPTAFFLFMDDFRKEFKAAHPDNKSVATV 128
Query: 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 100
K GGEKWKSM++ +K PYV KA + K + E
Sbjct: 129 AKEGGEKWKSMTDEEKKPYVEKAAELKAQAE 159
>gi|221220328|gb|ACM08825.1| High mobility group protein B3 [Salmo salar]
Length = 203
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ KA KDPN PKRP S FFVF E R + K HP N + V K GE W ++++++
Sbjct: 82 GKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHP-NFGIGDVAKKLGEMWNNLTDSN 140
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K PY+AKA K K +Y+KD+ +Y
Sbjct: 141 KQPYLAKANKLKEKYQKDVADY 162
>gi|221220618|gb|ACM08970.1| High mobility group protein B3 [Salmo salar]
gi|223646914|gb|ACN10215.1| High mobility group protein B3 [Salmo salar]
gi|223672777|gb|ACN12570.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ KA KDPN PKRP S FFVF E R + K HP N + V K GE W ++++++
Sbjct: 82 GKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHP-NFGIGDVAKKLGEMWNNLTDSN 140
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K PY+AKA K K +Y+KD+ +Y
Sbjct: 141 KQPYLAKANKLKEKYQKDVADY 162
>gi|221219912|gb|ACM08617.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ KA KDPN PKRP S FFVF E R + K HP N + V K GE W ++++++
Sbjct: 82 GKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHP-NFGIGDVAKKLGEMWNNLTDSN 140
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K PY+AKA K K +Y+KD+ +Y
Sbjct: 141 KQPYLAKANKLKEKYQKDVADY 162
>gi|162462896|ref|NP_001105076.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|17017396|gb|AAL33652.1|AF440223_1 HMG type nucleosome/chromatin assembly factor D [Zea mays]
gi|22135475|gb|AAM93218.1|AF527617_1 nucleasome/chromatin assembly factor D protein NFD106 [Zea mays]
Length = 154
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KR +AFF+FM++FR+++K HP NKSVA V K GGE+WKSM++ +K PY+ KA + K
Sbjct: 33 KRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVAKEGGERWKSMTDEEKKPYIEKAAELK 92
Query: 97 VEYE 100
E E
Sbjct: 93 AEAE 96
>gi|225463454|ref|XP_002275908.1| PREDICTED: high mobility group B protein 14 [Vitis vinifera]
gi|297740668|emb|CBI30850.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
NK AK ++S + D KPK+P +AFF F+E+FR+++++ +P KS+ +GKA GEKW
Sbjct: 70 NKAKAKTKKRSQRV--DSKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKW 127
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE-EEEESEKS 120
K+M+ +K Y A +++ E+++ M +Y +RQ E+EE E S
Sbjct: 128 KTMTYEEKVQYYDIATEKRAEFDRAMADYIKRQESGEDEEIEDS 171
>gi|326525246|dbj|BAK07893.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 215
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
K KRP +AFF+FM++FR ++K HP K VAAVGKA GEKW+SM+E +K PY +A++ K
Sbjct: 100 KAKRPPTAFFLFMKDFRVEFKTSHPDEKGVAAVGKAAGEKWRSMTEEEKKPYNDQAKELK 159
Query: 97 VEYEKDMKNYNRRQPEEEEESEKSMSEVNDED 128
+ + + + +EE+++ EV+D D
Sbjct: 160 AQLD-NGEGSAENNVGDEEKADADAEEVDDAD 190
>gi|226503761|ref|NP_001151622.1| HMG1/2-like protein [Zea mays]
gi|195648164|gb|ACG43550.1| HMG1/2-like protein [Zea mays]
gi|414881086|tpg|DAA58217.1| TPA: HMG1/2-like protein [Zea mays]
Length = 115
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP PK+P +AFF FME+FR+ YK++ P KS+ +GKA GEKW +M+ +K Y A
Sbjct: 37 DPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGKACGEKWNTMTFEEKVKYYDIAT 96
Query: 94 KRKVEYEKDMKNYNRRQ 110
+++ E+EK M YN+++
Sbjct: 97 EKRAEFEKAMIEYNKKK 113
>gi|125527178|gb|EAY75292.1| hypothetical protein OsI_03182 [Oryza sativa Indica Group]
Length = 133
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
RK G+ D +PK+P +AFF FME+FR+ YK+++P KS+ VGKA GEKW +M+ +
Sbjct: 36 SRKKGQPLVDRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEE 95
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKS 120
+ Y A +++ EYEK + +++++ E E SE+S
Sbjct: 96 RVKYYDIATEKRAEYEKPVAEFDKKK-ESGELSEES 130
>gi|52219178|ref|NP_001004674.1| high-mobility group box 2b [Danio rerio]
gi|51858850|gb|AAH81415.1| High-mobility group box 2 [Danio rerio]
gi|182889482|gb|AAI65150.1| Hmgb2 protein [Danio rerio]
Length = 214
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K+G+ KDPN PKRP SAFFVF E+R K +HP N ++ + K GE W
Sbjct: 80 PPKGVGKTGRKKKDPNAPKRPPSAFFVFCSEYRPTVKSEHP-NLTIGEIAKKLGELWSKQ 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S D+AP+ KA K + +YEK++ Y
Sbjct: 139 SSKDRAPFEQKAGKLREKYEKEVAAY 164
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKK---DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
D NKPK SA+ F++ R+++K+ D P N + K E+WKS++ +DK +
Sbjct: 5 DVNKPKGKTSAYAFFVQTCRDEHKRKSPDVPVN--FSEFSKKCSERWKSLNASDKVKFED 62
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV Y+++MK Y
Sbjct: 63 MAKADKVRYDREMKTY 78
>gi|297597325|ref|NP_001043799.2| Os01g0666200 [Oryza sativa Japonica Group]
gi|56202161|dbj|BAD73639.1| HMG protein-like [Oryza sativa Japonica Group]
gi|125527174|gb|EAY75288.1| hypothetical protein OsI_03176 [Oryza sativa Indica Group]
gi|215693961|dbj|BAG89148.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673529|dbj|BAF05713.2| Os01g0666200 [Oryza sativa Japonica Group]
Length = 133
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
RK G+ D +PK+P +AFF FME+FR+ YK+++P KS+ VGKA GEKW +M+ +
Sbjct: 36 SRKKGQPLVDRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEE 95
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKS 120
+ Y A +++ EYEK + +++++ E E SE+S
Sbjct: 96 RVKYYDIATEKRAEYEKAVAEFDKKK-ESGELSEES 130
>gi|213982973|ref|NP_001135648.1| uncharacterized protein LOC100216207 [Xenopus (Silurana)
tropicalis]
gi|156914901|gb|AAI52619.1| Hmgb2 protein [Danio rerio]
gi|197245630|gb|AAI68534.1| Unknown (protein for MGC:181066) [Xenopus (Silurana) tropicalis]
Length = 214
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K+G+ KDPN PKRP SAFFVF E+R K +HP N ++ + K GE W
Sbjct: 80 PPKGVGKTGRKKKDPNAPKRPPSAFFVFCSEYRPTVKSEHP-NLTIGEIAKKLGELWSKQ 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S D+AP+ KA K + +YEK++ Y
Sbjct: 139 SSKDRAPFEQKAGKLREKYEKEVAAY 164
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKK---DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
D NKPK SA+ F++ R+++K+ D P N + K E+WKS++ +DK +
Sbjct: 5 DVNKPKGKTSAYAFFVQTCRDEHKRKGPDVPVN--FSEFSKKCSERWKSLNASDKVKFED 62
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV Y+++MK Y
Sbjct: 63 MAKADKVRYDREMKTY 78
>gi|225715078|gb|ACO13385.1| High mobility group protein B3 [Esox lucius]
Length = 204
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ KA KDPN PKRP S FFVF E R + K HP + + V K GE W +++++
Sbjct: 82 GKRGKKAKKDPNAPKRPPSGFFVFCAEQRPKIKAQHP-SFGIGDVAKKLGEAWNNLTDSS 140
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNR 108
K PY+AKA K K +Y KD+ +Y R
Sbjct: 141 KQPYLAKANKLKEKYRKDVADYKR 164
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
D KPK SA+ F++ RE++KK +P+ + + K +WK+MS +K+ + +A
Sbjct: 5 DARKPKGKMSAYAYFVQTCREEHKKKNPEIPVNFSEFSKKCAGRWKTMSPKEKSKFEDQA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE +M +Y
Sbjct: 65 NQDKARYESEMTSY 78
>gi|225708606|gb|ACO10149.1| High mobility group protein B2 [Osmerus mordax]
Length = 216
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G K GK KDPN PKRP SAFFVF + R + K +HP S+ + K GE W + D
Sbjct: 83 GTKVGKRKKDPNAPKRPPSAFFVFCSDHRARIKGEHP-GISIGDIAKKLGELWSKQTPKD 141
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K PY AKA K K +YEKD+ Y
Sbjct: 142 KVPYEAKAGKLKEKYEKDVAAY 163
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVA 90
KDPNKP+ S++ F++ RE++KK HP + + K E+WK+MS +K +
Sbjct: 3 GKDPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFSEFSKKCSERWKTMSAKEKVKFED 62
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV ++++MK Y
Sbjct: 63 LAKGDKVRFDREMKGY 78
>gi|413938186|gb|AFW72737.1| hypothetical protein ZEAMMB73_544458 [Zea mays]
Length = 96
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 59/85 (69%), Gaps = 5/85 (5%)
Query: 49 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
M EFR++Y+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K +YEK N+++
Sbjct: 1 MSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKKQDYEKTKANFDK 60
Query: 109 RQPE-----EEEESEKSMSEVNDED 128
++ + E+ + S SEV+DED
Sbjct: 61 KESTSSKKAKTEDEDGSKSEVDDED 85
>gi|444730168|gb|ELW70558.1| High mobility group protein B3 [Tupaia chinensis]
Length = 369
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K G+ W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPLSGFFLFSSEFRPKIKSTNP-GISIGDVAKKLGDMWNNLSDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ NY
Sbjct: 148 KLKEKYEKDVANY 160
>gi|1085210|pir||S48708 high-mobility-group-1 protein - trout
Length = 204
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY KA
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 SKLKEKYEKDITAY 161
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ R ++KK HP+ + + + K E+WK+MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRIEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|609551|gb|AAA58771.1| HMG-1 [Oncorhynchus mykiss]
Length = 204
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY KA
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 SKLKEKYEKDITAY 161
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 2 GKDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 62 LAKLDKVRYEREMRSY 77
>gi|392333067|ref|XP_003752781.1| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
gi|392353165|ref|XP_001067503.2| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
Length = 212
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K GK KDPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K
Sbjct: 96 KGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIEDVVKKLGEMWNNLSDSEKQ 154
Query: 87 PYVAKAEKRKVEYEKDMKNY 106
PY+ KA K K +YEKD+ +Y
Sbjct: 155 PYMTKAAKLKEKYEKDVADY 174
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++K +P+ + A K E+WK+MS +K+ + A+ KV Y +
Sbjct: 28 SAYAFFVQTCREEHKTKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYGR 87
Query: 102 DMKNY 106
+MK+Y
Sbjct: 88 EMKDY 92
>gi|410917315|ref|XP_003972132.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 214
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K + S K KDPN PKRP SAFFVF + R + K+D+P S+ + K GE W +
Sbjct: 78 PPKGSKVSRKKKKDPNAPKRPPSAFFVFCSDHRPKIKEDNP-GISIGDIAKKLGELWSTQ 136
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
DKAPY A+A K K +YEKD+ Y
Sbjct: 137 GPKDKAPYEARAAKLKEKYEKDVAAY 162
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAK 91
KD +PK S++ F+ R+++KK HP + + K E+WK+MS +K+ +
Sbjct: 2 KDHGRPKGKMSSYAFFVTTCRDEHKKKHPGTPVNFSEFSKKCSERWKNMSSKEKSKFEEL 61
Query: 92 AEKRKVEYEKDMKNY 106
A+ K+ Y+++M++Y
Sbjct: 62 AKTDKIRYDQEMQSY 76
>gi|297812491|ref|XP_002874129.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
gi|297319966|gb|EFH50388.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
Length = 193
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPY 88
K++ NKPKRP +AFF+FM +FR+ +K +H N S+A K GGEKWKS++E +K Y
Sbjct: 107 KSSSTSNKPKRPLTAFFIFMNDFRKTFKTEH--NGSLAKDAAKIGGEKWKSLTEEEKKVY 164
Query: 89 VAKAEKRKVEYEKDM 103
+ KA + K EY K +
Sbjct: 165 LDKAAELKAEYNKSL 179
>gi|348543650|ref|XP_003459296.1| PREDICTED: high mobility group protein B2-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K G+ KDPN PKRP SAFFVF E+R K+ +P S+ K GE W +
Sbjct: 80 PPKGFGKRGRKRKDPNAPKRPPSAFFVFCSEYRPSVKQQYP-GLSIGDCAKKLGEMWSKL 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+++K PY KA+K + +Y++DM Y
Sbjct: 139 SQSEKQPYEEKAQKLREKYDRDMVAY 164
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KD NKPK SA+ F++ RE+++K +P ++ + A K E+WK++S +DK +
Sbjct: 4 KDINKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALSPSDKKCFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y ++MK+Y
Sbjct: 64 AKADKVRYNREMKDY 78
>gi|432953329|ref|XP_004085352.1| PREDICTED: high mobility group protein B2-like isoform 1 [Oryzias
latipes]
Length = 200
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K G+ KDPN PKRP SAFFVF E+R K+ +P S+ K GE W +
Sbjct: 80 PPKGFGKRGRKRKDPNAPKRPPSAFFVFCSEYRPSVKQQYP-GLSIGDCAKKLGEMWSKL 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+++K PY KA+K + +Y++DM Y
Sbjct: 139 SQSEKQPYEEKAQKLREKYDRDMVAY 164
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KD NKPK SA+ F++ RE+++K +P ++ + A K E+WK++S +DK +
Sbjct: 4 KDVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALSPSDKKCFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y ++M +Y
Sbjct: 64 AKADKVRYNREMCDY 78
>gi|388501678|gb|AFK38905.1| unknown [Medicago truncatula]
Length = 152
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 63/99 (63%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R+ + + ++ KA +K K D KPK+P +AFF F+E+FR+++K +P KS+ +G
Sbjct: 37 RSLRQTKSRDITKAVQKKNKQKIDAKKPKKPPTAFFYFLEDFRKEFKDQNPDVKSMRDIG 96
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
KA GEKWK+M+ +K Y A +++ E+++ YN++
Sbjct: 97 KACGEKWKTMTFEEKVQYYDIATEKRAEFDRATTEYNKK 135
>gi|18420676|ref|NP_568431.1| high-mobility group B6 protein [Arabidopsis thaliana]
gi|75245985|sp|Q8LDF9.1|HMGB7_ARATH RecName: Full=High mobility group B protein 7; AltName:
Full=Nucleosome/chromatin assembly factor group D 07;
Short=Nucleosome/chromatin assembly factor group D 7
gi|21554154|gb|AAM63233.1| unknown [Arabidopsis thaliana]
gi|26452394|dbj|BAC43282.1| unknown protein [Arabidopsis thaliana]
gi|332005781|gb|AED93164.1| high-mobility group B6 protein [Arabidopsis thaliana]
Length = 241
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPY 88
K++ NKPKRP +AFF+FM +FR+ +K +H N S+A K GGEKWKS++E +K Y
Sbjct: 107 KSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVY 164
Query: 89 VAKAEKRKVEYEKDM 103
+ KA + K EY K +
Sbjct: 165 LDKAAELKAEYNKSL 179
>gi|449433698|ref|XP_004134634.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
gi|449505924|ref|XP_004162605.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
Length = 161
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D NKPK+P +AFF F+++FR+++++ +P K++ VGKA GEKWK+M+ +K Y A
Sbjct: 69 DVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIAT 128
Query: 94 KRKVEYEKDMKNYNRR 109
+++ E++K M Y +R
Sbjct: 129 EKRAEFDKAMTEYKKR 144
>gi|357144307|ref|XP_003573245.1| PREDICTED: high mobility group B protein 7-like [Brachypodium
distachyon]
Length = 218
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 49/65 (75%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N KRP +AFF+FM++FR ++K HP K V+AVGKA G KWK+M++ +K PY+ +A++
Sbjct: 99 NGKKRPPTAFFIFMKDFRLEFKASHPDEKGVSAVGKAAGVKWKAMTDEEKKPYLDQAKEL 158
Query: 96 KVEYE 100
K +++
Sbjct: 159 KAKFD 163
>gi|185135647|ref|NP_001118186.1| high mobility group-T protein [Oncorhynchus mykiss]
gi|123382|sp|P07746.2|HMGT_ONCMY RecName: Full=High mobility group-T protein; Short=HMG-T; AltName:
Full=HMG-T1; Short=HMG-1
gi|64328|emb|CAA26500.1| unnamed protein product [Oncorhynchus mykiss]
Length = 204
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY KA
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
+ K +YEKD+ Y
Sbjct: 148 SRLKEKYEKDITAY 161
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 2 GKDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 62 LAKLDKVRYEREMRSY 77
>gi|413923415|gb|AFW63347.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 95
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 7/81 (8%)
Query: 49 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
M EFR++Y+ HP NKSVAAV KA GEKW+SMSE +K PYV +A ++K +YEK N
Sbjct: 1 MSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKKQDYEKTKANI-- 58
Query: 109 RQPEEEEESEKSMSEVNDEDD 129
E+ES S D+DD
Sbjct: 59 -----EKESTSSKKAKTDDDD 74
>gi|221221482|gb|ACM09402.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY KA
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
+ K +YEKD+ Y
Sbjct: 148 ARLKEKYEKDITAY 161
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ K+ YE++M++Y
Sbjct: 63 AKLDKMRYEREMRSY 77
>gi|9759080|dbj|BAB09558.1| unnamed protein product [Arabidopsis thaliana]
Length = 226
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPY 88
K++ NKPKRP +AFF+FM +FR+ +K +H N S+A K GGEKWKS++E +K Y
Sbjct: 92 KSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVY 149
Query: 89 VAKAEKRKVEYEKDM 103
+ KA + K EY K +
Sbjct: 150 LDKAAELKAEYNKSL 164
>gi|395857208|ref|XP_003800997.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 225
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P SV V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISVGDVAKKLGEMWNNLSDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKAMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|410930542|ref|XP_003978657.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 201
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K G+ KDPN PKRP SAFFVF E+R K+ +P S+ K GE W +
Sbjct: 80 PPKGFGKRGRKRKDPNAPKRPPSAFFVFCSEYRPSVKQQYP-GLSIGDCAKKLGEMWSKL 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PY KA+K + +Y++DM Y
Sbjct: 139 TQSEKQPYEEKAQKLREKYDRDMVAY 164
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KD NKPK SA+ F++ RE+++K +P ++ + A K E+WK +S +DK +
Sbjct: 4 KDVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKGLSASDKKCFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y ++M++Y
Sbjct: 64 AKADKVRYNREMRDY 78
>gi|18403553|ref|NP_565788.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|75219838|sp|O64702.2|HMG14_ARATH RecName: Full=High mobility group B protein 14; AltName:
Full=Nucleosome/chromatin assembly factor group D 14
gi|20197083|gb|AAC26692.2| putative HMG protein [Arabidopsis thaliana]
gi|20197160|gb|AAM14948.1| putative HMG protein [Arabidopsis thaliana]
gi|21536857|gb|AAM61189.1| putative HMG protein [Arabidopsis thaliana]
gi|26452914|dbj|BAC43535.1| putative HMG protein [Arabidopsis thaliana]
gi|28973511|gb|AAO64080.1| putative HMG protein [Arabidopsis thaliana]
gi|330253881|gb|AEC08975.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 151
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 19/117 (16%)
Query: 10 TRNAKLSVNKKPAKAGRKSGKAAKDPNK-----------------PKRPASAFFVFMEEF 52
+RN +L+V K ++ R+S + P + PK+PA+AFF F+++F
Sbjct: 20 SRNLELAV--KSSEGARRSTRLRLQPLRKPKTSPKKKPVKLQTKMPKKPATAFFFFLDDF 77
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
R+QY++++P KS+ +GK GEKWK+M+ +K Y A +++ E+ + M Y +R
Sbjct: 78 RKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYTKR 134
>gi|291410190|ref|XP_002721383.1| PREDICTED: high-mobility group box 3 [Oryctolagus cuniculus]
Length = 215
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 104 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAA 162
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 163 KLKEKYEKDVADY 175
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 29 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 88
Query: 102 DMKNY 106
+MK+Y
Sbjct: 89 EMKDY 93
>gi|349604600|gb|AEQ00107.1| High mobility group protein B3-like protein, partial [Equus
caballus]
Length = 118
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
GK KDPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY
Sbjct: 1 GKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPY 59
Query: 89 VAKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ +Y
Sbjct: 60 NNKAAKLKEKYEKDVADY 77
>gi|348551110|ref|XP_003461373.1| PREDICTED: high mobility group protein B3-like [Cavia porcellus]
Length = 202
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|354495940|ref|XP_003510086.1| PREDICTED: high mobility group protein B3-like [Cricetulus griseus]
gi|344249016|gb|EGW05120.1| High mobility group protein B3 [Cricetulus griseus]
Length = 200
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|432951224|ref|XP_004084757.1| PREDICTED: high mobility group protein B2-like [Oryzias latipes]
Length = 221
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFFVF + R + K+D+P S+ + K GE W + S DKAPY AKA
Sbjct: 114 DPNAPKRPPSAFFVFCSDHRPKIKEDNP-GISIGDIAKKLGELWATQSAKDKAPYEAKAA 172
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 173 KLKEKYEKDVAAY 185
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDPNKP+ SA+ F+ RE++KK HP + + A K E+WK+MS +K +
Sbjct: 25 TKDPNKPRGKTSAYAYFVATCREEHKKKHPGTSVNFAEFSKKCSERWKTMSSKEKVKFDE 84
Query: 91 KAEKRKVEYEKDMKNY 106
A+ K Y+++MK Y
Sbjct: 85 LAKTDKARYDREMKTY 100
>gi|148235321|ref|NP_001089163.1| high mobility group box 3 [Xenopus laevis]
gi|55824420|gb|AAV66347.1| high mobility group B3b protein [Xenopus laevis]
gi|114108280|gb|AAI23148.1| LOC734200 protein [Xenopus laevis]
Length = 201
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K GK KDPN PKRP S FF+F EFR + K +P S+ + K GE W ++S+ +K
Sbjct: 82 KKGKRNKDPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDIAKKLGEMWNNLSDGEKQ 140
Query: 87 PYVAKAEKRKVEYEKDMKNY 106
PY KA K K +YEKD+ +Y
Sbjct: 141 PYNNKAAKLKEKYEKDVADY 160
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYV 89
A +DP KPK SA+ F++ RE++KK +P+ + A K E+W+SMS +K+ +
Sbjct: 2 AKRDPKKPKGKMSAYAYFVQTCREEHKKKNPEIPVNFAEFSKKCSERWRSMSGKEKSKFE 61
Query: 90 AKAEKRKVEYEKDMKNY 106
A+ KV Y+++MK++
Sbjct: 62 DLAKADKVRYDREMKDF 78
>gi|213515010|ref|NP_001133971.1| High mobility group protein B3 [Salmo salar]
gi|209156012|gb|ACI34238.1| High mobility group protein B3 [Salmo salar]
gi|223648118|gb|ACN10817.1| High mobility group protein B3 [Salmo salar]
Length = 206
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K GRK KDPN PKRP+S FF+F + R + K HP + + V K GE+W +++
Sbjct: 82 GKKGRK-----KDPNAPKRPSSGFFIFCADHRPKIKAQHP-SLGIGDVAKKLGEQWNNLT 135
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNY 106
+A K PY+ KA K K +Y+KD+ +Y
Sbjct: 136 DATKQPYLIKANKLKDKYQKDVADY 160
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
P KPK S++ F++ RE++KK P+ + A K +WK+MS +K + A+
Sbjct: 6 PGKPKGKMSSYAYFVQTCREEHKKKTPEIPVNFAEFSKKCSGRWKTMSGKEKGKFDDMAK 65
Query: 94 KRKVEYEKDMKNY 106
+ KV Y+ +M ++
Sbjct: 66 QDKVRYDNEMMHF 78
>gi|47190944|emb|CAF93003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 204
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K G+ KDPN PKRP SAFFVF E+R K+ P S+ K GE W +
Sbjct: 83 PPKGFGKRGRKRKDPNAPKRPPSAFFVFCSEYRPSVKQQFP-GLSIGDCAKKLGEMWSKL 141
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+++K PY KA+K + +Y++DM Y
Sbjct: 142 SQSEKQPYEEKAQKLREKYDRDMVAY 167
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KD NKPK SA+ F++ RE+++K +P ++ + A K E+WK++S DK +
Sbjct: 7 KDVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALSAGDKKCFEDM 66
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y ++M++Y
Sbjct: 67 AKADKVRYNREMRDY 81
>gi|346986304|ref|NP_001069753.2| high mobility group protein B3 isoform 1 [Bos taurus]
Length = 274
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 163 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 221
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 222 KLKEKYEKDVADY 234
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 88 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 147
Query: 102 DMKNY 106
+MK+Y
Sbjct: 148 EMKDY 152
>gi|148694630|gb|EDL26577.1| mCG10155, isoform CRA_d [Mus musculus]
Length = 220
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PYV KA
Sbjct: 109 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAA 167
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 168 KLKEKYEKDVADY 180
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 34 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 93
Query: 102 DMKNY 106
+MK+Y
Sbjct: 94 EMKDY 98
>gi|426258242|ref|XP_004022724.1| PREDICTED: high mobility group protein B3 [Ovis aries]
Length = 248
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 160 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 218
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 219 KLKEKYEKDVADY 231
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 85 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 144
Query: 102 DMKNY 106
+MK+Y
Sbjct: 145 EMKDY 149
>gi|242053921|ref|XP_002456106.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
gi|241928081|gb|EES01226.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
Length = 109
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 6/95 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D PK+P +AFF FME+FR+ YK++ P KS+ +GKA GEKW +M+ +K Y A
Sbjct: 21 DRRAPKKPPTAFFYFMEDFRKVYKQEKPSVKSMQEIGKACGEKWNTMAFEEKVKYYDIAT 80
Query: 94 KRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDED 128
+++ E+EK M YN+++ E MSE +D D
Sbjct: 81 EKRAEFEKAMIEYNKKKKNGE------MSEESDYD 109
>gi|148694627|gb|EDL26574.1| mCG10155, isoform CRA_b [Mus musculus]
Length = 206
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PYV KA
Sbjct: 95 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAA 153
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 154 KLKEKYEKDVADY 166
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 20 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 79
Query: 102 DMKNY 106
+MK+Y
Sbjct: 80 EMKDY 84
>gi|81673590|gb|AAI09794.1| High-mobility group box 3 [Bos taurus]
gi|296471156|tpg|DAA13271.1| TPA: high mobility group protein B3 isoform 1 [Bos taurus]
Length = 236
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 125 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 183
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 184 KLKEKYEKDVADY 196
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 50 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 109
Query: 102 DMKNY 106
+MK+Y
Sbjct: 110 EMKDY 114
>gi|395844161|ref|XP_003794831.1| PREDICTED: uncharacterized protein LOC100953571 [Otolemur
garnettii]
Length = 357
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K KDPN PK P S FF+F EFR + K +P S+ V K GE W S+
Sbjct: 247 PAKGGKK-----KDPNAPKTPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNSL 300
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+++K PY+ KA + K + EKD+ +Y
Sbjct: 301 SDSEKQPYITKAAQLKEKDEKDVADY 326
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYV 89
A +DP KPK A+ F++ RE++KK +P+ ++A K E+WK+ S +K+
Sbjct: 169 AKRDPKKPKGKMPAYAFFVQTCREEHKKKNPEVPVNLAEFSKKCSERWKATSGKEKSKSD 228
Query: 90 AKAEKRKVEYEKDMKNY 106
A+ KV ++++K+Y
Sbjct: 229 EMAKADKVCCDREVKDY 245
>gi|148682307|gb|EDL14254.1| mCG114640 [Mus musculus]
Length = 200
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PYV KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|6680231|ref|NP_032279.1| high mobility group protein B3 [Mus musculus]
gi|20138160|sp|O54879.3|HMGB3_MOUSE RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|2738989|gb|AAC16925.1| high mobility group protein homolog HMG4 [Mus musculus]
gi|15030059|gb|AAH11276.1| Hmgb3 protein [Mus musculus]
gi|26327985|dbj|BAC27733.1| unnamed protein product [Mus musculus]
gi|54035419|gb|AAH83352.1| High mobility group box 3 [Mus musculus]
gi|74146994|dbj|BAE27437.1| unnamed protein product [Mus musculus]
gi|74186760|dbj|BAE34835.1| unnamed protein product [Mus musculus]
gi|74192972|dbj|BAE34988.1| unnamed protein product [Mus musculus]
gi|74194280|dbj|BAE24671.1| unnamed protein product [Mus musculus]
gi|148694626|gb|EDL26573.1| mCG10155, isoform CRA_a [Mus musculus]
gi|148694628|gb|EDL26575.1| mCG10155, isoform CRA_a [Mus musculus]
gi|187957408|gb|AAI58038.1| High mobility group box 3 [Mus musculus]
Length = 200
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PYV KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|440910877|gb|ELR60625.1| High mobility group protein B3 [Bos grunniens mutus]
Length = 236
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 125 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 183
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 184 KLKEKYEKDVADY 196
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 50 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 109
Query: 102 DMKNY 106
+MK+Y
Sbjct: 110 EMKDY 114
>gi|311277128|ref|XP_003135516.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 202
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|350588033|ref|XP_003482539.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
gi|350588037|ref|XP_003482541.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 196
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
>gi|223649496|gb|ACN11506.1| High mobility group protein B3 [Salmo salar]
Length = 207
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K GRK KDPN PKRP S FF+F + R + K HP + + V K GE+W +++
Sbjct: 82 GKKGRK-----KDPNAPKRPPSGFFIFCADHRPKIKAQHP-SLGIGDVAKKLGEQWNNLT 135
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNY 106
+A K PY+ KA K K +Y+KD+ +Y
Sbjct: 136 DATKQPYLIKANKLKDKYQKDVADY 160
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
P KPK SA+ F++ RE++KK P+ + A K +WK+MS +K + A+
Sbjct: 6 PGKPKGKMSAYAYFVQTCREEHKKKSPEIPVNFAEFSKKCSGRWKTMSGKEKGKFEDMAK 65
Query: 94 KRKVEYEKDMKNY 106
+ KV Y+ +M ++
Sbjct: 66 QDKVRYDNEMMHF 78
>gi|403305854|ref|XP_003943467.1| PREDICTED: high mobility group protein B3 [Saimiri boliviensis
boliviensis]
Length = 202
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSEFDEMAKADKVCYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|115459940|ref|NP_001053570.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|38345400|emb|CAE03091.2| OSJNBa0017B10.6 [Oryza sativa Japonica Group]
gi|113565141|dbj|BAF15484.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|116309704|emb|CAH66751.1| H0409D10.9 [Oryza sativa Indica Group]
gi|116309707|emb|CAH66753.1| OSIGBa0158F05.2 [Oryza sativa Indica Group]
gi|125549359|gb|EAY95181.1| hypothetical protein OsI_16998 [Oryza sativa Indica Group]
gi|149391231|gb|ABR25633.1| hmg1/2-like protein [Oryza sativa Indica Group]
gi|213959192|gb|ACJ54930.1| HMG protein [Oryza sativa Japonica Group]
gi|215767864|dbj|BAH00093.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629376|gb|EEE61508.1| hypothetical protein OsJ_15798 [Oryza sativa Japonica Group]
gi|323388963|gb|ADX60286.1| HMG transcription factor [Oryza sativa Japonica Group]
Length = 132
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 64/116 (55%), Gaps = 11/116 (9%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A KPKR + FF F+ EFR QY + HP K VAAV KA GEKW++MS+ +KA Y
Sbjct: 17 KKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYG 76
Query: 90 AK---------AEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSGE 136
K A +K E K +E E S+KS S+V EDD+ +GSGE
Sbjct: 77 GKKPDGESKPAAASKKKESTSSKKAKTDGAEQEGEGSDKSKSDV--EDDENDGSGE 130
>gi|355705241|gb|EHH31166.1| hypothetical protein EGK_21042 [Macaca mulatta]
Length = 200
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKLKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|395754558|ref|XP_002832281.2| PREDICTED: high mobility group protein B3 isoform 2 [Pongo abelii]
Length = 199
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|410256410|gb|JAA16172.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|410932269|ref|XP_003979516.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
gi|410933007|ref|XP_003979884.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
Length = 209
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F EFR + K +HP ++ V K GE W + + DK PY KA
Sbjct: 95 DPNAPKRPPSAFFIFCSEFRPKVKGEHP-GLTIGEVAKKLGELWNNTNSEDKQPYEKKAS 153
Query: 94 KRKVEYEKDMKNYNRR 109
K K +YEKD+ Y ++
Sbjct: 154 KLKEKYEKDVAAYRQK 169
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEA 83
GR SG+ A KP+ S++ F++ RE++KK HP + + + + E+WK+MS
Sbjct: 2 GRDSGREA---GKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSRKCSERWKTMSVK 58
Query: 84 DKAPYVAKAEKRKVEYEKDMKNY 106
+K + A++ KV Y+++M +Y
Sbjct: 59 EKGKFEDLAKQDKVRYDREMMDY 81
>gi|320091041|gb|ADW08807.1| high mobility group box X [Lethenteron camtschaticum]
Length = 225
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 21 PAKAGR--KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
PA+ GR + + KDPN PKRP SAFF+F +FR Q K D+P + + K GE W
Sbjct: 80 PARGGRGGPAQRKKKDPNAPKRPPSAFFIFCADFRPQIKADNP-GMVIGTIAKRLGEMWG 138
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+ +KAPY KA K +Y+KD+ Y R
Sbjct: 139 RQTNENKAPYEHKANILKEKYKKDVAAYQR 168
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV--GKAGGEKWKSMSEADKAPYVAK 91
DP+KP+ S++ F++ RE++KK HP N SVA + E+WK +S +K +
Sbjct: 5 DPSKPRGRMSSYAYFVQTCREEHKKKHP-NDSVAFTDFSRKCSERWKGLSPKEKLRFEDL 63
Query: 92 AEKRKVEYEKDMKNY 106
A K Y+ +MK+Y
Sbjct: 64 ARADKTRYDTEMKDY 78
>gi|392354293|ref|XP_003751730.1| PREDICTED: high mobility group protein B3-like isoform 1 [Rattus
norvegicus]
Length = 241
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 130 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYMTKAA 188
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 189 KLKEKYEKDVADY 201
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 55 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 114
Query: 102 DMKNY 106
+MK+Y
Sbjct: 115 EMKDY 119
>gi|2285963|emb|CAA71143.1| high mobility group protein 2a [Homo sapiens]
Length = 200
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 42 ASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 100
SA+ F++ RE++KK +P+ + A K E+WK++S +K+ + A+ KV Y+
Sbjct: 13 TSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTVSGKEKSKFDEMAKADKVRYD 72
Query: 101 KDMKNY 106
++MK+Y
Sbjct: 73 REMKDY 78
>gi|359062996|ref|XP_003585778.1| PREDICTED: high mobility group protein B3-like, partial [Bos
taurus]
Length = 186
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|351715334|gb|EHB18253.1| High mobility group protein B3, partial [Heterocephalus glaber]
Length = 151
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 40 DPNAPKRPPPGFFLFFSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAA 98
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 99 KLKEKYEKDVADY 111
>gi|410219302|gb|JAA06870.1| high mobility group box 3 [Pan troglodytes]
Length = 199
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|296236643|ref|XP_002763412.1| PREDICTED: high mobility group protein B3-like [Callithrix jacchus]
Length = 203
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|226443200|ref|NP_001140081.1| High mobility group-T protein [Salmo salar]
gi|223649418|gb|ACN11467.1| High mobility group-T protein [Salmo salar]
Length = 345
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY KA
Sbjct: 231 KDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKA 289
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 290 AKLKEKYEKDITAY 303
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 145 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 204
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 205 AKLDKVRYEREMRSY 219
>gi|167773205|gb|ABZ92037.1| high-mobility group box 3 [synthetic construct]
Length = 198
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|109132602|ref|XP_001091672.1| PREDICTED: high mobility group protein B3-like isoform 3 [Macaca
mulatta]
gi|109132606|ref|XP_001091441.1| PREDICTED: high mobility group protein B3-like isoform 1 [Macaca
mulatta]
gi|402911729|ref|XP_003918461.1| PREDICTED: high mobility group protein B3 isoform 1 [Papio anubis]
gi|402911731|ref|XP_003918462.1| PREDICTED: high mobility group protein B3 isoform 2 [Papio anubis]
Length = 201
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|71143137|ref|NP_005333.2| high mobility group protein B3 [Homo sapiens]
gi|426397735|ref|XP_004065062.1| PREDICTED: high mobility group protein B3 isoform 1 [Gorilla
gorilla gorilla]
gi|426397739|ref|XP_004065064.1| PREDICTED: high mobility group protein B3 isoform 3 [Gorilla
gorilla gorilla]
gi|85701353|sp|O15347.4|HMGB3_HUMAN RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|47124341|gb|AAH70482.1| HMGB3 protein [Homo sapiens]
gi|117645316|emb|CAL38124.1| hypothetical protein [synthetic construct]
gi|117646384|emb|CAL38659.1| hypothetical protein [synthetic construct]
gi|119619803|gb|EAW99397.1| high-mobility group box 3, isoform CRA_a [Homo sapiens]
gi|410351655|gb|JAA42431.1| high mobility group box 3 [Pan troglodytes]
gi|410351657|gb|JAA42432.1| high mobility group box 3 [Pan troglodytes]
Length = 200
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|397466921|ref|XP_003805186.1| PREDICTED: high mobility group protein B3 [Pan paniscus]
gi|410057106|ref|XP_001135676.3| PREDICTED: high mobility group protein B3 isoform 1 [Pan
troglodytes]
gi|426397737|ref|XP_004065063.1| PREDICTED: high mobility group protein B3 isoform 2 [Gorilla
gorilla gorilla]
gi|119619804|gb|EAW99398.1| high-mobility group box 3, isoform CRA_b [Homo sapiens]
Length = 220
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 109 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 167
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 168 KLKEKYEKDVADY 180
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 34 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 93
Query: 102 DMKNY 106
+MK+Y
Sbjct: 94 EMKDY 98
>gi|409075359|gb|EKM75740.1| hypothetical protein AGABI1DRAFT_116212 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198009|gb|EKV47935.1| hypothetical protein AGABI2DRAFT_191645 [Agaricus bisporus var.
bisporus H97]
Length = 262
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 6 SKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS 65
S + R A ++++ A RK KDPN PKRPAS++ +F E R+Q K HP+ +
Sbjct: 49 SNTHKRKADVALDDDEAPKKRKRNAKPKDPNAPKRPASSYILFQNEIRKQLKDQHPELTN 108
Query: 66 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEE 113
A + + WK MSE +KA Y E K Y +D K Y+ R PEE
Sbjct: 109 -AELLNMISDIWKKMSEDEKATYHKLVEDAKERYSQDKKAYDSRTPEE 155
>gi|164450473|ref|NP_001106728.1| high mobility group protein B3 isoform 2 [Bos taurus]
gi|146324910|sp|Q32L31.2|HMGB3_BOVIN RecName: Full=High mobility group protein B3
gi|296471157|tpg|DAA13272.1| TPA: high mobility group protein B3 isoform 2 [Bos taurus]
gi|399227521|gb|AFP36466.1| HMGB3 transcript variant 1/2 [Bos taurus]
gi|399227522|gb|AFP36467.1| HMGB3 transcript variant 3 [Bos taurus]
Length = 200
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|348538096|ref|XP_003456528.1| PREDICTED: high mobility group protein B2-like [Oreochromis
niloticus]
Length = 196
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFFVF + R + K+D+P S+ + K GE W + S DKAPY AKA
Sbjct: 91 DPNAPKRPPSAFFVFCSDHRPKIKEDNP-GISIGDIAKKLGEMWATQSAKDKAPYEAKAA 149
Query: 94 KRKVEYEKDMKNY 106
+ K +YEKD+ Y
Sbjct: 150 RLKEKYEKDVAAY 162
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDPNKP+ S++ F+ RE++KK HP + + A K E+WK+MS +K +
Sbjct: 2 TKDPNKPRGKTSSYAFFVATCREEHKKKHPGTSVNFAEFSKKCSERWKTMSPKEKGKFEE 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV Y+++MK Y
Sbjct: 62 MAKNDKVRYDREMKTY 77
>gi|290560936|ref|NP_001166812.1| high mobility group box 3 [Rattus norvegicus]
gi|392354295|ref|XP_003751731.1| PREDICTED: high mobility group protein B3-like isoform 2 [Rattus
norvegicus]
gi|149027076|gb|EDL82825.1| rCG56793 [Rattus norvegicus]
gi|165971283|gb|AAI58740.1| Hmgb3 protein [Rattus norvegicus]
Length = 200
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYMTKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|361127235|gb|EHK99210.1| putative Non-histone chromosomal protein 6 [Glarea lozoyensis
74030]
Length = 100
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K K +++ K KDPN PKR SA+ F E RE ++++P S VGK GE+WK+
Sbjct: 5 KAPKRAKRTEKKKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKVLGERWKA 63
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEE 114
+S+ + PY AKA+ K+ YE++ NYN EEE
Sbjct: 64 LSDTQRKPYAAKADADKIRYEEEKANYNADAEEEE 98
>gi|356524949|ref|XP_003531090.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 148
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 53/76 (69%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D KPK+P +AFF F+E+FR+++++ +P KS+ +GKA GEKWK+M+ +K Y A
Sbjct: 56 DAMKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIAT 115
Query: 94 KRKVEYEKDMKNYNRR 109
K++ E++ M +N++
Sbjct: 116 KKREEFDNAMAEFNKK 131
>gi|170784871|ref|NP_001116308.1| wu:fk52f12 [Danio rerio]
Length = 213
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K G+K KDPN PKRP S FF+F E R Q K +P + + V K GE W +
Sbjct: 80 PGKRGKK-----KDPNAPKRPPSGFFLFCSEHRPQIKAQYP-SLGIGDVAKKLGEMWNGL 133
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++A+K P++ KA K K +Y+KD+ +Y
Sbjct: 134 TDANKQPFLMKANKLKDKYQKDVADY 159
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYV 89
A DP KPK SA+ F++ RE++KK P+ S + K +WK+M++ +K+ +
Sbjct: 2 AKGDPRKPKGKMSAYAYFVQTCREEHKKKSPEIPVSFSEFSKRCSGRWKAMTDKEKSRFE 61
Query: 90 AKAEKRKVEYEKDMKNY 106
A++ KV Y+++M +Y
Sbjct: 62 DMAKQDKVRYDQEMMHY 78
>gi|291403518|ref|XP_002718101.1| PREDICTED: high mobility group box 3-like [Oryctolagus cuniculus]
Length = 197
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++DK Y+ KA
Sbjct: 89 DPNAPKRPPSRFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSDKQQYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVTDY 160
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDW 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|45361297|ref|NP_989226.1| high mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|38969943|gb|AAH63332.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89267209|emb|CAJ81415.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89272910|emb|CAJ82928.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
Length = 211
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F EFR + K +HP ++ + K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GSTIGDIAKKLGEMWNNTATDDKLPYERKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDVAAY 162
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|237845111|ref|XP_002371853.1| high mobility group protein [Toxoplasma gondii ME49]
gi|211969517|gb|EEB04713.1| high mobility group protein [Toxoplasma gondii ME49]
gi|221480801|gb|EEE19228.1| high mobility group protein, putative [Toxoplasma gondii GT1]
gi|221501467|gb|EEE27242.1| high mobility group protein, putative [Toxoplasma gondii VEG]
Length = 302
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKS 79
P K K KA KDPN PKRP SAF F ++ RE+ + +P+ KS +A VGK GE W
Sbjct: 211 PKKTIVKKTKAKKDPNAPKRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGK 270
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNY 106
+S+A K PY +KA K YE++M Y
Sbjct: 271 LSDAQKKPYESKAVADKARYEREMIAY 297
>gi|355762621|gb|EHH62030.1| hypothetical protein EGM_20207 [Macaca fascicularis]
Length = 201
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVPKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|256080078|ref|XP_002576310.1| structure specific recognition protein [Schistosoma mansoni]
gi|350646026|emb|CCD59303.1| structure specific recognition protein,putative [Schistosoma
mansoni]
Length = 632
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 54/89 (60%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K+P+K K K KDPN P RP SA+F++ E RE+ K+ SVA V KA GE W
Sbjct: 526 TKQPSKRQTKKQKKPKDPNAPTRPLSAYFLWFNENREKIAKNLGGQNSVAEVAKAAGEIW 585
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
++M K+ Y ++ ++ K +Y++D++ Y
Sbjct: 586 RNMDSTAKSSYQSRVDELKKKYQEDLRIY 614
>gi|402882719|ref|XP_003904882.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Papio anubis]
Length = 132
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K+ DPN PKRP S FF+F EF + K +P S+ V K GE WK++
Sbjct: 18 PAKGGKKN-----DPNAPKRPLSGFFLFCSEFHPKMKSTNP-GISIGDVAKKLGEMWKNL 71
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PYV K K ++YEKD+ +Y
Sbjct: 72 NDSEKQPYVTKVAKL-MKYEKDVADY 96
>gi|85000895|ref|XP_955166.1| high-mobility-group (HMG) protein [Theileria annulata strain
Ankara]
gi|65303312|emb|CAI75690.1| high-mobility-group (HMG) protein, putative [Theileria annulata]
Length = 94
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSE 82
AG+KS +A KDPN PKR S++ F +E R + +D+P + VAAVGK G W S+ E
Sbjct: 9 AGKKSKRAKKDPNAPKRALSSYMFFAKEKRAELVRDNPDLARDVAAVGKLVGAAWNSLDE 68
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYNR 108
++KAPY AE + YEK+ YN+
Sbjct: 69 SEKAPYEKLAEADRARYEKEKAAYNK 94
>gi|205539816|sp|P0C6E5.1|HG3BL_HUMAN RecName: Full=Putative high mobility group protein B3-like protein
Length = 187
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K KDPN PKRP S FF+F EF + K +P + V K GE WK++
Sbjct: 80 PAKGGKK-----KDPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNL 133
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PY+ +A K K +YEKD+ Y
Sbjct: 134 NDSEKQPYITQAAKLKEKYEKDVAVY 159
Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +PK + A K E+WK+MS+ +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73
Query: 102 DMKNY 106
++K+Y
Sbjct: 74 EIKDY 78
>gi|145480005|ref|XP_001426025.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393097|emb|CAK58627.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 14/101 (13%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKK--------DHPKNKSVAAV 69
N KP K K +DPN PKRP +AFF+F +++RE+ + D+ + +
Sbjct: 19 NDKPEK------KKERDPNAPKRPLTAFFLFSQKYREKVLERNPGIDLSDYQLEVKLIQI 72
Query: 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
+ G+KW+SMSE +K PYV + + K +Y D+K YN +Q
Sbjct: 73 SQMAGQKWQSMSEQEKQPYVDQYNQAKSKYNDDVKEYNEKQ 113
>gi|357139210|ref|XP_003571177.1| PREDICTED: high mobility group B protein 13-like [Brachypodium
distachyon]
Length = 537
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+KPK+P SA+FV+ +E R + K+V +GK GE+WKSM++A KAPY A
Sbjct: 325 DPSKPKQPMSAYFVYSQERRAALVAE---KKNVPEIGKITGEEWKSMTDAQKAPYEEVAS 381
Query: 94 KRKVEYEKDMKNYNRRQPEEEE 115
K+K EY K M+ Y +++ EE +
Sbjct: 382 KQKEEYHKQMEVYKQKKLEETQ 403
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPN+PK+PAS+F +F +E R+Q ++ P N ++ A+ KWK +S +K + K
Sbjct: 450 DPNRPKKPASSFLLFSKEARKQLVEERPGVNNSTINALISV---KWKELSGTEKKTWSEK 506
Query: 92 AEKRKVEYEKDMKNYN 107
A + Y+++M+ Y
Sbjct: 507 AAEGMAAYKREMEEYT 522
>gi|255557355|ref|XP_002519708.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223541125|gb|EEF42681.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 198
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 17 VNKKPAKAGRKSGK--AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGG 74
V K AK R S + A D KPK+P +AFF F+E+FR+ ++K +P KS+ +GKA G
Sbjct: 87 VKDKRAKPKRISKRQIAKLDSKKPKKPPTAFFYFLEDFRKDFQKQNPDVKSMREIGKACG 146
Query: 75 EKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
EKWK M+ +K Y A +++ E++K M Y
Sbjct: 147 EKWKMMTYEEKVKYYDIATEKRAEFDKAMAEY 178
>gi|49258306|pdb|1J3C|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 79
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ K GE W S DK PY KA
Sbjct: 4 KDPNAPKRPPSAFFLFCSEYRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKA 62
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 63 AKLKEKYEKDIAAY 76
>gi|431920081|gb|ELK18129.1| High mobility group protein B3 [Pteropus alecto]
Length = 255
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 141 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 199
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 200 KLKEKYEKDVADY 212
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 66 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 125
Query: 102 DMKNY 106
+MK+Y
Sbjct: 126 EMKDY 130
>gi|729728|sp|P40618.2|HMGB3_CHICK RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|63494|emb|CAA45065.1| HMG2a [Gallus gallus]
Length = 202
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +KA + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|148673204|gb|EDL05151.1| mCG5336 [Mus musculus]
Length = 216
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAVYDKQPYGKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|387016392|gb|AFJ50315.1| High mobility group protein B1 [Crotalus adamanteus]
Length = 215
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87
S K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + S DK P
Sbjct: 85 SKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTSSEDKQP 143
Query: 88 YVAKAEKRKVEYEKDMKNY 106
+ KA K K +YEKD+ Y
Sbjct: 144 FEKKAGKLKEKYEKDIAAY 162
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
KV YE++MK Y
Sbjct: 65 RADKVRYEREMKTY 78
>gi|347921933|ref|NP_990626.2| high mobility group protein B3 [Gallus gallus]
Length = 217
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 104 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 162
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 163 KLKEKYEKDVADY 175
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +KA + A+ KV Y++
Sbjct: 29 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 88
Query: 102 DMKNY 106
+MK+Y
Sbjct: 89 EMKDY 93
>gi|211520|gb|AAA48685.1| HMG box (bp. 1499..1757), partial [Gallus gallus]
Length = 669
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 4 GKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
G+ KS K+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP
Sbjct: 475 GEKKSSQEGPKIVKDRKPRKKQVES-KKGKDPNVPKRPMSAYMLWLNANREKIKSDHP-G 532
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
S+ + K GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 533 ISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 576
>gi|326918606|ref|XP_003205579.1| PREDICTED: high mobility group protein B2-like [Meleagris
gallopavo]
Length = 246
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K DHP S+ K GE W S DK PY KA
Sbjct: 129 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 187
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 188 KLKEKYEKDIAAY 200
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK HP + + A + E+WK+MS +K + A+ K Y++
Sbjct: 52 SSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARYDR 111
Query: 102 DMKNY 106
+MKNY
Sbjct: 112 EMKNY 116
>gi|221221758|gb|ACM09540.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY KA
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKVETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDITAY 161
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|221220042|gb|ACM08682.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY KA
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKVETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDITAY 161
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|358410870|ref|XP_003581858.1| PREDICTED: high mobility group protein B3-like [Bos taurus]
Length = 197
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNY 106
K +YEKD+ +Y
Sbjct: 148 KLXEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|213513415|ref|NP_001133101.1| high mobility group protein B1 [Salmo salar]
gi|197631937|gb|ACH70692.1| high-mobility group box 1 [Salmo salar]
Length = 203
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY KA
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDITAY 161
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|401402785|ref|XP_003881334.1| high mobility group protein, related [Neospora caninum Liverpool]
gi|325115746|emb|CBZ51301.1| high mobility group protein, related [Neospora caninum Liverpool]
Length = 94
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKS 79
P K K KA KDPN PKRP SAF F ++ RE+ + +P+ KS +A VGK GE W
Sbjct: 3 PKKTIVKKTKAKKDPNAPKRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGK 62
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+S+A K PY +KA K YE++M Y +
Sbjct: 63 LSDAQKKPYESKAVADKARYEREMIAYKK 91
>gi|221221148|gb|ACM09235.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY KA
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDITAY 161
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS +K +
Sbjct: 2 GKDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 62 LAKLDKVRYEREMRSY 77
>gi|357165293|ref|XP_003580334.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 135
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 69/123 (56%), Gaps = 12/123 (9%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KA K KA KPKR + FF F+ EFR QY + HP+ K VAAV KA GEKW+SMS+
Sbjct: 12 KASGKRKKATGGVAKPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVTKAAGEKWRSMSD 71
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYNRRQP---------EEEEESEKSMSEVNDEDDDEEG 133
+KA Y K K++V+ K K EE E S+KS S+V D D +E+G
Sbjct: 72 EEKAKYGGK--KQEVQENKAAKKKESTSSKKAKTDGDEEEGEGSDKSKSDVED-DGEEDG 128
Query: 134 SGE 136
+ E
Sbjct: 129 ANE 131
>gi|126333240|ref|XP_001376238.1| PREDICTED: FACT complex subunit SSRP1 [Monodelphis domestica]
Length = 712
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
GK KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K +
Sbjct: 538 GKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEW 596
Query: 89 VAKAEKRKVEYEKDMKNYN 107
KAE+ K EYEK MK Y+
Sbjct: 597 DRKAEEAKREYEKAMKEYS 615
>gi|223646906|gb|ACN10211.1| High mobility group-T protein [Salmo salar]
gi|223672769|gb|ACN12566.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY KA
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDITAY 161
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 2 GKDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 62 LAKLDKVRYEREMRSY 77
>gi|225709792|gb|ACO10742.1| High mobility group protein B2 [Caligus rogercresseyi]
Length = 215
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K + +GK KDPN PKRP SAFFVF E R + K D+P + + K G W
Sbjct: 80 PPKGSKAAGKRKKDPNAPKRPPSAFFVFCAEHRGRIKADNP-GMGIGDIAKQLGLLWGKQ 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
+ DK P+ AKA K K +YEKD+ Y
Sbjct: 139 TPKDKLPHEAKATKLKEKYEKDVAAY 164
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVA 90
KDPNKPK S++ F+ RE++KK HP + + K E+W++MS +K +
Sbjct: 3 GKDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFED 62
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV Y+KDMK Y
Sbjct: 63 MAKGDKVRYDKDMKGY 78
>gi|395544035|ref|XP_003773918.1| PREDICTED: FACT complex subunit SSRP1 [Sarcophilus harrisii]
Length = 712
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
GK KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K +
Sbjct: 538 GKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKDKKEEW 596
Query: 89 VAKAEKRKVEYEKDMKNYN 107
KAE+ K EYEK MK Y+
Sbjct: 597 DRKAEEAKREYEKAMKEYS 615
>gi|351724833|ref|NP_001237839.1| uncharacterized protein LOC100305607 [Glycine max]
gi|255626057|gb|ACU13373.1| unknown [Glycine max]
Length = 150
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 53/76 (69%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D KP++P +AFF F+E+FR+++++ +P +S+ +GKA GEKWK+M+ +K Y A
Sbjct: 58 DAMKPRKPPTAFFYFLEDFRKEFQEQNPDVRSMRDIGKACGEKWKTMTYEEKVQYYDIAT 117
Query: 94 KRKVEYEKDMKNYNRR 109
K++ E++ M +N++
Sbjct: 118 KKREEFDSAMAEFNKK 133
>gi|213959194|gb|ACJ54931.1| HMG protein [Oryza sativa Japonica Group]
Length = 131
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 63/115 (54%), Gaps = 10/115 (8%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A KPKR + FF F+ EFR QY + HP K VAAV KA GEKW++MS+ +KA Y
Sbjct: 17 KKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYG 76
Query: 90 AK--------AEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSGE 136
K A K + K +E E S+KS S+V EDD+ +GSGE
Sbjct: 77 GKKPDGESKPAAASKKKSTSSKKAKTDGAEQEGEGSDKSKSDV--EDDENDGSGE 129
>gi|391638|dbj|BAA03261.1| ORF1 [Gallus gallus]
Length = 298
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 110 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 167
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 168 AGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 202
>gi|449270893|gb|EMC81539.1| High mobility group protein B2 [Columba livia]
Length = 207
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K DHP S+ K GE W S DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A + E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>gi|211929|gb|AAA48819.1| high-mobility group-2 protein [Gallus gallus]
Length = 207
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K DHP S+ K GE W S DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ ++KK HP + + A + E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCPREHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>gi|297812105|ref|XP_002873936.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
gi|297319773|gb|EFH50195.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
Length = 224
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPY 88
K++ NKPKRP +AFF+FM +FR+ +K +H N S A K GGEKW S++E +K Y
Sbjct: 104 KSSSTSNKPKRPLTAFFIFMNDFRKTFKTEH--NGSFAKDAAKIGGEKWMSLTEDEKKVY 161
Query: 89 VAKAEKRKVEYEK 101
+ KA + K EY K
Sbjct: 162 LDKAAELKAEYNK 174
>gi|213514690|ref|NP_001133170.1| high-mobility group box 2 [Salmo salar]
gi|197632301|gb|ACH70874.1| high-mobility group box 2 [Salmo salar]
gi|221219834|gb|ACM08578.1| High mobility group protein B2 [Salmo salar]
gi|221220870|gb|ACM09096.1| High mobility group protein B2 [Salmo salar]
gi|223646276|gb|ACN09896.1| High mobility group protein B2 [Salmo salar]
gi|223646962|gb|ACN10239.1| High mobility group protein B2 [Salmo salar]
gi|223672123|gb|ACN12243.1| High mobility group protein B2 [Salmo salar]
gi|223672825|gb|ACN12594.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K + +GK KDPN PKRP SAFFVF E R + K D+P + + K G W
Sbjct: 80 PPKGSKAAGKRKKDPNAPKRPPSAFFVFCAEHRGRIKADNP-GMGIGDIAKQLGLLWGKQ 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
+ DK P+ AKA K K +YEKD+ Y
Sbjct: 139 TPKDKLPHEAKAAKLKEKYEKDVAAY 164
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDPNKPK S++ F+ RE++KK HP + + K E+W++MS +K +
Sbjct: 4 KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y+KDMK Y
Sbjct: 64 AKGDKVRYDKDMKGY 78
>gi|218117885|dbj|BAH03305.1| structure-specific recognition protein 1 [Gallus gallus]
Length = 706
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 579 AGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
>gi|148234528|ref|NP_001080836.1| high mobility group box 1 [Xenopus laevis]
gi|32450384|gb|AAH54148.1| Hmgb1-prov protein [Xenopus laevis]
Length = 211
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F EFR + K +HP ++ + K GE W + + DK P+ KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GSTIGDIAKKLGEMWNNTATDDKLPFERKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDVAAY 162
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|449272347|gb|EMC82325.1| FACT complex subunit SSRP1 [Columba livia]
Length = 704
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AKL ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKLVKDRKPRKKQPES-KKGKDPNAPKRPMSAYMLWLNASRERIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
GE WK+MS+ K + KAE + +YEK MK Y+
Sbjct: 579 AGELWKAMSKEKKEEWDRKAEDARRDYEKAMKEYS 613
>gi|79324303|ref|NP_001031480.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|330253882|gb|AEC08976.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 152
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 20/118 (16%)
Query: 10 TRNAKLSVNKKPAKAGRKSGKAAKDPNK-----------------PKRPASAFFVFMEEF 52
+RN +L+V K ++ R+S + P + PK+PA+AFF F+++F
Sbjct: 20 SRNLELAV--KSSEGARRSTRLRLQPLRKPKTSPKKKPVKLQTKMPKKPATAFFFFLDDF 77
Query: 53 REQYKKDHPKNKSVA-AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
R+QY++++P KS+ +GK GEKWK+M+ +K Y A +++ E+ + M Y +R
Sbjct: 78 RKQYQEENPDVKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYTKR 135
>gi|281338637|gb|EFB14221.1| hypothetical protein PANDA_014002 [Ailuropoda melanoleuca]
Length = 168
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|326920276|ref|XP_003206400.1| PREDICTED: FACT complex subunit SSRP1-like [Meleagris gallopavo]
Length = 706
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 579 AGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
>gi|57524786|ref|NP_001005796.1| FACT complex subunit SSRP1 [Gallus gallus]
gi|110283005|sp|Q04678.2|SSRP1_CHICK RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53128417|emb|CAG31300.1| hypothetical protein RCJMB04_4n20 [Gallus gallus]
Length = 706
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 579 AGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
>gi|355563197|gb|EHH19759.1| hypothetical protein EGK_02478, partial [Macaca mulatta]
Length = 121
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 7/86 (8%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ + DPN PKRP S FF+F EF + K +P S+ V K GE WK++
Sbjct: 18 PAKGGKNN-----DPNAPKRPLSGFFLFCSEFHPKMKSTNP-GISIGDVAKKLGEMWKNL 71
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PYV K K ++YEKD+ +Y
Sbjct: 72 NDSEKQPYVTKVAKL-MKYEKDVADY 96
>gi|410989557|ref|XP_004001438.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Felis catus]
Length = 201
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|395545985|ref|XP_003774876.1| PREDICTED: high mobility group protein B3-like [Sarcophilus
harrisii]
Length = 201
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|149410917|ref|XP_001509199.1| PREDICTED: high mobility group protein B3-like isoform 1
[Ornithorhynchus anatinus]
gi|345306624|ref|XP_003428488.1| PREDICTED: high mobility group protein B3-like isoform 2
[Ornithorhynchus anatinus]
Length = 201
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|296810682|ref|XP_002845679.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
gi|238843067|gb|EEQ32729.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
Length = 103
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
GR K KDPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+
Sbjct: 13 GRGVEKKKKDPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSDKQ 71
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQPEEE 114
+ PY KA K YE + YN RQ EEE
Sbjct: 72 RVPYEEKAATDKQRYEDEKAAYNSRQEEEE 101
>gi|609553|gb|AAA74556.1| HMG-T2 [Oncorhynchus mykiss]
Length = 215
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K + +GK KDPN PKRP SAFFVF E R + K D+P + + K G W
Sbjct: 80 PPKGSKAAGKRKKDPNAPKRPPSAFFVFCAEHRGRIKADNP-GMGIGDIAKQLGLLWGKQ 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
+ DK P+ AKA K K +YEKD+ Y
Sbjct: 139 TPKDKQPHEAKAAKLKEKYEKDVAAY 164
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDPNKPK S++ F+ RE++KK HP + + K E+W++MS +K +
Sbjct: 4 KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y+KDMK Y
Sbjct: 64 AKGDKVRYDKDMKGY 78
>gi|221221606|gb|ACM09464.1| High mobility group protein B2 [Salmo salar]
gi|223646184|gb|ACN09850.1| High mobility group protein B2 [Salmo salar]
gi|223646756|gb|ACN10136.1| High mobility group protein B2 [Salmo salar]
gi|223672031|gb|ACN12197.1| High mobility group protein B2 [Salmo salar]
gi|223672611|gb|ACN12487.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K + +GK KDPN PKRP SAFFVF E R + K D+P + + K G W
Sbjct: 80 PPKGSKAAGKRKKDPNAPKRPPSAFFVFCAEHRGRIKADNP-GMGIGDIAKQLGLLWGKQ 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
+ DK P+ AKA K K +YEKD+ Y
Sbjct: 139 TPKDKQPHEAKAAKLKEKYEKDVAAY 164
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDPNKPK S++ F+ RE++KK HP + + K E+W++MS +K +
Sbjct: 4 KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV Y+KDMK Y
Sbjct: 64 AKGDKVRYDKDMKGY 78
>gi|57112857|ref|XP_538194.1| PREDICTED: high mobility group protein B3 [Canis lupus familiaris]
gi|338729649|ref|XP_001505130.3| PREDICTED: high mobility group protein B3-like isoform 1 [Equus
caballus]
Length = 201
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|417396975|gb|JAA45521.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 200
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|301778413|ref|XP_002924621.1| PREDICTED: high mobility group protein B3-like [Ailuropoda
melanoleuca]
Length = 201
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|171848939|pdb|2YQI|A Chain A, Solution Structure Of The Second Hmg-Box Domain From High
Mobility Group Protein B3
Length = 81
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
G + N PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY
Sbjct: 1 GSSGSSGNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPY 59
Query: 89 VAKAEKRKVEYEKDMKNY 106
+ KA K K +YEKD+ +Y
Sbjct: 60 ITKAAKLKEKYEKDVADY 77
>gi|320168039|gb|EFW44938.1| hypothetical protein CAOG_02944 [Capsaspora owczarzaki ATCC 30864]
Length = 193
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P G KSGK +KDPN PKRP SA+ F R + +K +P + ++ A+ GE W+ +
Sbjct: 85 PVSTGGKSGKKSKDPNAPKRPPSAYICFANAVRPELRKTYPSD-TMPAISTKIGELWRQL 143
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++ +K PY +AE K++++ +M Y
Sbjct: 144 TDDNKEPYNKQAEALKLKFQTEMAAY 169
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPNKPK+P +AF F RE+ K +P K + + G+ W + EADK Y A
Sbjct: 10 KDPNKPKKPTTAFMYFSNAMRERVKTQNPGLK-MTDIASVLGKLWGQLPEADKDKYQTMA 68
Query: 93 EKRKVEYEKDMKNY 106
K Y K M Y
Sbjct: 69 NSDKERYAKAMDGY 82
>gi|49258307|pdb|1J3D|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 78
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 3 KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKA 61
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 62 AKLKEKYEKDIAAY 75
>gi|148238271|ref|NP_001081794.1| high mobility group protein-1 [Xenopus laevis]
gi|709959|gb|AAC59859.1| high mobility group protein-1 [Xenopus laevis]
Length = 210
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K +HP ++ + K GE W + + DK PY +A
Sbjct: 89 KDPNAPKRPPSAFFLFCSDFRPKIKGEHP-GSTIGDIAKKLGEMWNNTATDDKLPYERRA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDVAAY 161
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS-EADKAPYVAK 91
DP KP+ S++ F++ RE++KK HP + + A K E+WK+MS E K +AK
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSKEKTKFEDMAK 64
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++MK+Y
Sbjct: 65 AD--KVRYEREMKSY 77
>gi|49115548|gb|AAH73449.1| HMG-1 protein [Xenopus laevis]
Length = 210
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K +HP ++ + K GE W + + DK PY +A
Sbjct: 89 KDPNAPKRPPSAFFLFCSDFRPKIKGEHP-GSTIGDIAKKLGEMWNNTATDDKLPYERRA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDVAAY 161
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS-EADKAPYVAK 91
DP KP+ S++ F++ RE++KK HP + + A K E+WK+MS E K +AK
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSKEKTKFEDMAK 64
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++MK+Y
Sbjct: 65 AD--KVRYEREMKSY 77
>gi|291399740|ref|XP_002716281.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 243
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYERKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD Y
Sbjct: 149 AKLKGKYEKDTAAY 162
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
D KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DRKKPRGKMSSYAFFVQTCREEHKKRHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|332260744|ref|XP_003279440.1| PREDICTED: uncharacterized protein LOC100604184 [Nomascus
leucogenys]
Length = 414
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG---KAGGEKWKSMSEADK 85
GK KDPN P+RP S FF+F EFR + K +P + G K GE WK++++++K
Sbjct: 84 GKKKKDPNAPQRPLSGFFLFCSEFRPKIKSTNPGKTGIFGFGDVAKKLGEMWKNLNDSEK 143
Query: 86 APYVAKAEKRKVEYEKDM 103
P++ +A K K +YEKD+
Sbjct: 144 QPHITQAAKLKEKYEKDV 161
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +PK + A K E+WK++SE K+ + A
Sbjct: 5 DPTKPKGKMSAYAFFVQTCREEHKKKNPKVPVNFAEFSKKCSERWKTISEKKKSEFNELA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV Y++ +K+Y
Sbjct: 65 KADKVHYDQKIKDY 78
>gi|297826905|ref|XP_002881335.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297327174|gb|EFH57594.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 152
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 21/124 (16%)
Query: 6 SKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNK------------------PKRPASAFFV 47
S +RN +L+V K ++ R+S + P + PK+P +AFF
Sbjct: 16 SGGSSRNLELAV--KSSEGARRSTRLRLQPLRKPKSSPKKKKPVKLHSKMPKKPPTAFFF 73
Query: 48 FMEEFREQYKKDHPKNKSVA-AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
F+E+FR+QY++++P+ KS+ +GK GEKWK+M+ +K Y A +++ E+ + M Y
Sbjct: 74 FLEDFRKQYQEENPEVKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEY 133
Query: 107 NRRQ 110
+R
Sbjct: 134 TKRM 137
>gi|56384901|gb|AAV85889.1| high mobility group 1 protein [Pelodiscus sinensis]
Length = 202
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|449269345|gb|EMC80131.1| High mobility group protein B3 [Columba livia]
Length = 202
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +KA + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEIPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|355694844|gb|AER99804.1| high-mobility group box 3 [Mustela putorius furo]
Length = 197
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 91 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 150 KLKEKYEKDVADY 162
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 16 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 75
Query: 102 DMKNY 106
+MK+Y
Sbjct: 76 EMKDY 80
>gi|392337480|ref|XP_003753270.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343959|ref|XP_003748829.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWTNTAADDKQPYGKMA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|349802605|gb|AEQ16775.1| putative high mobility group box 3 [Pipa carvalhoi]
Length = 149
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++E +K PY KA
Sbjct: 64 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNEGEKQPYNNKAA 122
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 123 KLKEKYEKDVADY 135
>gi|224098124|ref|XP_002198052.1| PREDICTED: high mobility group protein B3 isoform 1 [Taeniopygia
guttata]
gi|326924638|ref|XP_003208532.1| PREDICTED: high mobility group protein B3-like [Meleagris
gallopavo]
gi|449498655|ref|XP_004177286.1| PREDICTED: high mobility group protein B3 isoform 2 [Taeniopygia
guttata]
Length = 202
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +KA + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|56756695|gb|AAW26520.1| SJCHGC07008 protein [Schistosoma japonicum]
Length = 213
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K +K K K KDPN P RP SA+F++ E RE+ K SVA V KAGGE W++
Sbjct: 111 KSSKRQTKKQKKPKDPNAPTRPLSAYFLWFNENREKIAKSLSGQNSVAEVAKAGGELWRN 170
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNY 106
M K+ Y ++ ++ K +Y++D++ Y
Sbjct: 171 MDSETKSTYQSRVDELKKKYQEDLRVY 197
>gi|547652|sp|P36194.2|HMGB1_CHICK RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|391636|dbj|BAA03260.1| HMG-1 [Gallus gallus]
Length = 201
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 146
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 147 KLKEKYEKDVADY 159
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102
SA+ F++ RE++KK+ + A K E+WK+MS +KA + A+ KV Y+++
Sbjct: 14 SAYAFFVQTCREEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDRE 73
Query: 103 MKNY 106
MK+Y
Sbjct: 74 MKDY 77
>gi|56788496|gb|AAW29969.1| unknown [Sus scrofa]
gi|56792880|gb|AAW30632.1| unknown [Sus scrofa]
Length = 193
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKXA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|296200444|ref|XP_002747606.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 210
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDP+ PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPSAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNYN 107
K K +YEKD+ Y
Sbjct: 149 SKLKEKYEKDIAAYQ 163
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|71027705|ref|XP_763496.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350449|gb|EAN31213.1| high mobility group protein, putative [Theileria parva]
Length = 94
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSE 82
AG+KS +A KDPN PKR S++ F +E R + +++P + VAAVGK G W S+ E
Sbjct: 9 AGKKSKRAKKDPNAPKRALSSYMFFAKEKRAELVRENPDLARDVAAVGKLVGAAWNSLDE 68
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYNR 108
++KAPY AE + YEK+ YN+
Sbjct: 69 SEKAPYEKLAEADRARYEKEKAAYNK 94
>gi|351706443|gb|EHB09362.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 226
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K P ++ V K GE W ++S+++K PY+ K
Sbjct: 108 DPNAPKRPPSGFFLFCSEFRPKIKSTKP-GITIGDVAKKLGEMWNNLSDSEKQPYITKVA 166
Query: 94 KRKVEYEKDMKNY 106
K K ++EKD+ +Y
Sbjct: 167 KLKEKHEKDVADY 179
>gi|407926962|gb|EKG19868.1| High mobility group HMG1/HMG2 [Macrophomina phaseolina MS6]
Length = 106
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KA + GK KDPN PKR SA+ F + R++ ++++P K VGK GE+WK++S
Sbjct: 11 TKASKADGKKKKDPNAPKRGLSAYMFFANDMRDKVREENPGIK-FGEVGKILGERWKALS 69
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEESE 118
E +APY AKA K YE + YN +E+E SE
Sbjct: 70 EKQRAPYEAKAANDKKRYEDEKAAYNAGGDDEDEASE 106
>gi|291415754|ref|XP_002724114.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 115 DPNAPKRPPSAFFLFCSEHRPEIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 173
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 174 KLKEKYEKDIAAY 186
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 22 AKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKS 79
A GR+S K DPNKP+ S++ F++ RE++KK HP + + A K E+WK+
Sbjct: 16 APGGRRSVVMGKGDPNKPRDKMSSYAFFVQMCREEHKKKHPDSSINFAEFSKKCSERWKT 75
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS +K+ + A+ K Y+++MKNY
Sbjct: 76 MSAKEKSKFENMAKSDKARYDREMKNY 102
>gi|334323271|ref|XP_003340370.1| PREDICTED: high mobility group protein B1-like [Monodelphis
domestica]
Length = 216
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNYNRR 109
K +YEKD+ Y +
Sbjct: 149 AILKEKYEKDIAAYRTK 165
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFQDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KADKVHYEREMKTY 78
>gi|119187239|ref|XP_001244226.1| hypothetical protein CIMG_03667 [Coccidioides immitis RS]
gi|303317166|ref|XP_003068585.1| Nonhistone chromosomal protein 6B, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108266|gb|EER26440.1| Nonhistone chromosomal protein 6B, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320038503|gb|EFW20438.1| nucleosome binding protein Nhp6a [Coccidioides posadasii str.
Silveira]
gi|392870942|gb|EAS32789.2| non-histone chromosomal protein 6 [Coccidioides immitis RS]
Length = 102
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
GR++ K KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+
Sbjct: 12 GRRAEKKKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALSDKQ 70
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQPEEE 114
+APY KA K YE + NYN + +EE
Sbjct: 71 RAPYEEKAAADKKRYEDEKANYNAHEDDEE 100
>gi|392575401|gb|EIW68534.1| hypothetical protein TREMEDRAFT_32029 [Tremella mesenterica DSM
1558]
Length = 116
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+++ K KDPN PKR SA+ F++++R + K DHP + S GK GEKWK+MS A+K
Sbjct: 19 KRAPKEKKDPNAPKRGLSAYMFFVQDYRPKIKNDHP-DVSFGETGKLLGEKWKAMSAAEK 77
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEV 124
P+ A K K+ EKD K Y E++ S+KS V
Sbjct: 78 KPFEDLAAKDKLRAEKDKKAYLATGGGEKKTSKKSKPAV 116
>gi|302926833|ref|XP_003054372.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
gi|256735313|gb|EEU48659.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
Length = 101
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K KA +K GK KDPN PKR SA+ F E RE ++++P S VGK GE+WK+
Sbjct: 8 KRGKAVKKRGK--KDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKA 64
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEE 114
++E +APY AKA K YE + + YN Q EEE
Sbjct: 65 LNEKQRAPYEAKAAADKKRYEDEKQAYNADQEEEE 99
>gi|253756810|gb|ACT35162.1| HmgB3y, partial [Monodelphis domestica]
Length = 193
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 86 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYNNKAA 144
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 145 KLKEKYEKDVADY 157
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A
Sbjct: 2 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKNMSGKEKSKFDEMA 61
Query: 93 EKRKVEYEKDMKNY 106
+ K+ Y+++MK+Y
Sbjct: 62 KADKLRYDREMKDY 75
>gi|27881711|gb|AAH44715.1| MGC52578 protein [Xenopus laevis]
Length = 212
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G GK KDPN PKRP SAFF+F E R Q K + P S+ K GE W + D
Sbjct: 83 GETKGKRKKDPNAPKRPPSAFFIFCSEHRPQIKSETP-GLSIGDTAKKLGELWAEQTPKD 141
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K P+ KA K K +YEKD+ Y
Sbjct: 142 KLPHEQKAAKLKEKYEKDVAAY 163
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + K E+WKSMS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSEFSKKCSERWKSMSAKEKGKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KGDKARYEREMKTY 78
>gi|283462216|gb|ADB22402.1| dorsal switch-like hmg protein [Saccoglossus kowalevskii]
Length = 241
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR S FF+F R + KK HP N V V KA GE+WK++S ADKA Y +A
Sbjct: 121 DPDAPKRNLSPFFLFCNVKRAEVKKVHP-NWGVGDVAKALGEQWKNVSAADKAKYEKEAA 179
Query: 94 KRKVEYEKDMKNY 106
K K+ YEKDM+ Y
Sbjct: 180 KEKIRYEKDMEAY 192
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV-AAVGKAGGEKWKSMSEADKAPYVAKA 92
+P+KPK SA+ F++ R+++KK HP V A K E+WK M++ +K + A
Sbjct: 32 NPDKPKGRMSAYAFFVQSCRQEHKKQHPAESVVFAEFSKKCAERWKKMTDKEKKVFHDMA 91
Query: 93 EKRKVEYEKDMKNYN 107
+K K Y +M+ Y
Sbjct: 92 DKDKERYNTEMEKYT 106
>gi|254826706|ref|NP_001157151.1| high mobility group protein B3 [Monodelphis domestica]
gi|253756818|gb|ACT35166.1| HmgB3x [Monodelphis domestica]
Length = 201
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|345320167|ref|XP_001521836.2| PREDICTED: FACT complex subunit SSRP1-like, partial
[Ornithorhynchus anatinus]
Length = 295
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
GK KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK M++ K +
Sbjct: 118 GKKGKDPNAPKRPMSAYMLWLNASREKIKADHP-GISITDLSKKAGEIWKGMTKEKKEEW 176
Query: 89 VAKAEKRKVEYEKDMKNYN 107
KAE+ K EYEK MK Y+
Sbjct: 177 DRKAEEAKREYEKAMKEYS 195
>gi|226479042|emb|CAX73016.1| structure specific recognition protein 1 [Schistosoma japonicum]
Length = 679
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN P RP SA+F++ E RE+ K SVA V KAGGE W++M K+ Y ++
Sbjct: 590 KDPNAPTRPLSAYFLWFNENREKIAKSLSGQNSVAEVAKAGGELWRNMDSETKSTYQSRV 649
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEE 116
++ K +Y++D++ Y +E E
Sbjct: 650 DELKKKYQEDLRVYQSNLSSKERE 673
>gi|414869181|tpg|DAA47738.1| TPA: hypothetical protein ZEAMMB73_864709 [Zea mays]
Length = 198
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKRP SAFFVFM EFR++Y+ HP NKS+ V K GEKW + S+
Sbjct: 153 KPKRPPSAFFVFMSEFRQEYQVQHPGNKSIVVVSKTAGEKWHAKSD 198
>gi|344299188|ref|XP_003421269.1| PREDICTED: high mobility group protein B3-like [Loxodonta africana]
Length = 200
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|403295522|ref|XP_003938690.1| PREDICTED: high mobility group protein B3-like [Saimiri boliviensis
boliviensis]
Length = 202
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN KRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNASKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV Y+++MK+Y
Sbjct: 65 KADKVRYDREMKDY 78
>gi|326499588|dbj|BAJ86105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+KPK+P SA+F++ +E R + K+V +GK GE+WK M+EA KAPY A
Sbjct: 330 DPSKPKQPMSAYFLYSQERRGALVAE---KKTVPEIGKITGEEWKGMTEAQKAPYEEAAR 386
Query: 94 KRKVEYEKDMKNYNRR 109
K+K Y+K M+ YN++
Sbjct: 387 KQKEAYQKQMEVYNQK 402
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPN+PK+PAS+F +F +E R+Q ++ P N +++A+ KWK +S A+K + K
Sbjct: 455 DPNRPKKPASSFLLFSKEARKQLAEERPGVNNSTLSALISV---KWKDLSSAEKKVWSQK 511
Query: 92 AEKRKVEYEKDMKNYNR 108
A + Y+ +M Y +
Sbjct: 512 AAQGMAAYKMEMDEYTK 528
>gi|148223673|ref|NP_001079576.1| HMG-X protein [Xenopus laevis]
gi|639691|dbj|BAA06440.1| HMG-X protein [Xenopus laevis]
Length = 212
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G GK KDPN PKRP SAFF+F E R Q K + P S+ K GE W + D
Sbjct: 83 GETKGKRKKDPNAPKRPPSAFFIFCSEHRPQIKSETP-GLSIGDTAKKLGELWAEQTPKD 141
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K P+ KA K K +YEKD+ Y
Sbjct: 142 KLPHEQKAAKLKEKYEKDVAAY 163
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + K E+WKSMS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSDFSKKCSERWKSMSAKEKGKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KGDKARYEREMKTY 78
>gi|111154063|ref|NP_892035.2| FACT complex subunit SSRP1 [Mus musculus]
gi|209862973|ref|NP_001129553.1| FACT complex subunit SSRP1 [Mus musculus]
gi|110283006|sp|Q08943.2|SSRP1_MOUSE RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|74138726|dbj|BAE27178.1| unnamed protein product [Mus musculus]
gi|74144584|dbj|BAE27280.1| unnamed protein product [Mus musculus]
gi|74144625|dbj|BAE27299.1| unnamed protein product [Mus musculus]
gi|74177273|dbj|BAE34555.1| unnamed protein product [Mus musculus]
Length = 708
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 20 KPAKAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE W
Sbjct: 527 KDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIW 585
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
K MS+ K + KAE + EYEK MK Y
Sbjct: 586 KGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|27502780|gb|AAH42502.1| Ssrp1 protein [Mus musculus]
Length = 711
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 20 KPAKAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE W
Sbjct: 527 KDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIW 585
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
K MS+ K + KAE + EYEK MK Y
Sbjct: 586 KGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|46105649|ref|XP_380561.1| hypothetical protein FG00385.1 [Gibberella zeae PH-1]
gi|110287687|sp|Q4IQX3.1|NHP6_GIBZE RecName: Full=Non-histone chromosomal protein 6
gi|408400690|gb|EKJ79767.1| hypothetical protein FPSE_00047 [Fusarium pseudograminearum CS3096]
Length = 101
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +APY
Sbjct: 16 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNEKQRAPYE 74
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEE 114
AKA K YE + + YN Q EEE
Sbjct: 75 AKAAADKKRYEDEKQAYNADQEEEE 99
>gi|119491564|ref|XP_001263303.1| nucleosome binding protein (Nhp6a), putative [Neosartorya fischeri
NRRL 181]
gi|119411463|gb|EAW21406.1| nucleosome binding protein (Nhp6a), putative [Neosartorya fischeri
NRRL 181]
Length = 104
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R++ ++++P S VGK GE+WK++S+ D+ PY KA
Sbjct: 20 KDPNAPKRGLSAYMFFANENRDKVREENP-GISFGQVGKMLGERWKALSDTDRRPYEEKA 78
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEES 117
K YE + +YN Q E+EEES
Sbjct: 79 AADKKRYEDEKASYNAAQDEDEEES 103
>gi|449500530|ref|XP_002187513.2| PREDICTED: high mobility group protein B2 [Taeniopygia guttata]
Length = 145
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 40 DPNAPKRPPSAFFLFCSEHRPKIKNEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 98
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 99 KLKEKYEKDIAAY 111
>gi|8170740|gb|AAB19500.2| HMG1-related DNA-binding protein [Mus sp.]
Length = 708
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 23 KAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK M
Sbjct: 530 KSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGM 588
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ K + KAE + EYEK MK Y
Sbjct: 589 SKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|52345682|ref|NP_001004888.1| high mobility group box 3 [Xenopus (Silurana) tropicalis]
gi|49522962|gb|AAH75290.1| MGC88931 protein [Xenopus (Silurana) tropicalis]
gi|89267024|emb|CAJ81774.1| high-mobility group box 3 [Xenopus (Silurana) tropicalis]
Length = 202
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++ +K PY KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDGEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAYFVQTCREEHKKKNPEIPVNFAEFSKKCSERWKTMSAKEKSKFDDLAKADKVRYDR 73
Query: 102 DMKNY 106
+MK++
Sbjct: 74 EMKDF 78
>gi|116283314|gb|AAH04848.1| Ssrp1 protein [Mus musculus]
Length = 633
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 20 KPAKAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE W
Sbjct: 527 KDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIW 585
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
K MS+ K + KAE + EYEK MK Y
Sbjct: 586 KGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|344252855|gb|EGW08959.1| TRAF family member-associated NF-kappa-B activator [Cricetulus
griseus]
Length = 427
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R ++K +HP S+ V K GE W + + DK PY KA
Sbjct: 303 KDPNAPKRPPSAFFLFCSEYRPKFKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 361
Query: 93 EKRKVEYEKDMKNY 106
K K ++EKD+ Y
Sbjct: 362 AKLKEKHEKDIAAY 375
>gi|397524101|ref|XP_003832048.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 130
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ DPN PKRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 18 PAKGGKN------DPNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVAKKLGEMWNNL 70
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PYV K K K +YEKD+ +Y
Sbjct: 71 NDSEKQPYVTKVAKLK-KYEKDVADY 95
>gi|344245608|gb|EGW01712.1| High mobility group protein B1 [Cricetulus griseus]
Length = 162
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K + P S+ K GE W S + DK PY KA
Sbjct: 39 KDPNAPKRPPSAFFLFCSEYHPKIKGERP-GLSIGDAAKKLGETWNSTAAEDKQPYETKA 97
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 98 AKLKEQYEKDIADY 111
>gi|45382755|ref|NP_990817.1| high mobility group protein B2 [Gallus gallus]
gi|123373|sp|P26584.2|HMGB2_CHICK RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|211927|gb|AAA48818.1| non-histone chromosomal protein [Gallus gallus]
Length = 207
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K DHP S+ K GE W DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQLAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A + E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>gi|395850201|ref|XP_003797684.1| PREDICTED: high mobility group protein B1 [Otolemur garnettii]
Length = 289
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|225195621|gb|ACN82088.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F EFR + K++ P S+ V K GE W S +K PY KA
Sbjct: 78 KDPNAPKRPPSAFFIFCAEFRPKVKEETP-GLSIGDVAKKLGEMWNKTSSEEKQPYEKKA 136
Query: 93 EKRKVEYEKDMKNY 106
+ K +YEKD+ Y
Sbjct: 137 ARLKEKYEKDITAY 150
Score = 41.6 bits (96), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK HP+ + + K E+WK+MS +K + A+ K YE+
Sbjct: 2 SSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARYER 61
Query: 102 DMKNY 106
+MKNY
Sbjct: 62 EMKNY 66
>gi|119596659|gb|EAW76253.1| hCG2042470 [Homo sapiens]
Length = 118
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ DPN PKRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 6 PAKGGKN------DPNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVAKKLGEMWNNL 58
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PYV K K K +YEKD+ +Y
Sbjct: 59 NDSEKQPYVTKVAKLK-KYEKDVADY 83
>gi|296317265|ref|NP_001171733.1| dorsal switch-like hmg protein [Saccoglossus kowalevskii]
Length = 215
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR S FF+F R + KK HP N V V KA GE+WK++S ADKA Y +A
Sbjct: 95 DPDAPKRNLSPFFLFCNVKRAEVKKVHP-NWGVGDVAKALGEQWKNVSAADKAKYEKEAA 153
Query: 94 KRKVEYEKDMKNY 106
K K+ YEKDM+ Y
Sbjct: 154 KEKIRYEKDMEAY 166
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV-AAVGKAGGEKWKSMSEADKAPYVAKA 92
+P+KPK SA+ F++ R+++KK HP V A K E+WK M++ +K + A
Sbjct: 6 NPDKPKGRMSAYAFFVQSCRQEHKKQHPAESVVFAEFSKKCAERWKKMTDKEKKVFHDMA 65
Query: 93 EKRKVEYEKDMKNYN 107
+K K Y +M+ Y
Sbjct: 66 DKDKERYNTEMEKYT 80
>gi|405963576|gb|EKC29138.1| FACT complex subunit SSRP1 [Crassostrea gigas]
Length = 757
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 10 TRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
+R+AK K P +K K+ KDPN PKRP SA+F++ RE+ KKD P + S+ +
Sbjct: 532 SRSAKTVREKLPGSEKKKKKKSKKDPNAPKRPQSAYFLWFNANREELKKDTP-DISITDL 590
Query: 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
K GE WK M + DK + KA + K EYEK M+ Y ++ E
Sbjct: 591 SKKAGEVWKQMEDTDKTEWNEKAAEAKKEYEKAMEEYKAKKKE 633
>gi|255544145|ref|XP_002513135.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223548146|gb|EEF49638.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 196
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 61/94 (64%), Gaps = 6/94 (6%)
Query: 41 PASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 100
P +AFF+F++EFR+ +K+ +P +K V V K GEKWK+M++ +K PY KA + K EY+
Sbjct: 103 PPTAFFIFLDEFRKTFKEANPDSKDVKRVAKEAGEKWKAMTDEEKKPYADKATELKAEYD 162
Query: 101 KDMKNYNRRQPEEEE------ESEKSMSEVNDED 128
K + N + +++E ++E+ + EV DE+
Sbjct: 163 KALGEVNNAENKDDEGGSEKDDAEQEVQEVPDEE 196
>gi|354488105|ref|XP_003506211.1| PREDICTED: FACT complex subunit SSRP1-like isoform 1 [Cricetulus
griseus]
gi|354488107|ref|XP_003506212.1| PREDICTED: FACT complex subunit SSRP1-like isoform 2 [Cricetulus
griseus]
gi|344253527|gb|EGW09631.1| FACT complex subunit SSRP1 [Cricetulus griseus]
Length = 709
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K + + AK++ ++K K ++ K KDPN PKRP SA+ +++ RE+ K DHP
Sbjct: 515 KKRKQLKRAKMAKDRKSRKKSSEA-KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GI 572
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 573 SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|327268628|ref|XP_003219098.1| PREDICTED: high mobility group protein B2-like [Anolis
carolinensis]
Length = 209
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E R + K DHP S+ K GE W + DK P+ KA
Sbjct: 88 KDPNAPKRPPSAFFLFCSEHRPKIKSDHP-GLSIGDTAKKLGEMWSLQTAKDKLPFEQKA 146
Query: 93 EKRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 147 LKLKEKYDKDIAAY 160
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+W++MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWRTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>gi|118343940|ref|NP_001071792.1| transcription factor protein [Ciona intestinalis]
gi|70570753|dbj|BAE06615.1| transcription factor protein [Ciona intestinalis]
Length = 310
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K +DPN+PKRP SA+F+F+ +FR+ Y K+ + K GE W S+S+A+K PY
Sbjct: 122 KKPRDPNRPKRPPSAYFLFLADFRKNYPG---KSDPAKEITKKAGEAWNSLSDAEKTPYY 178
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSGEV 137
A+ + ++E+D++ Y + + + S + + D E GEV
Sbjct: 179 RSAQLVRAKWEQDLEAYKQ---SVKCGTLSRASSIQSDHDPVEMVGEV 223
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 18 NKKPAKAGRKSG--KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
N P++ GRK K K KRP +A+ F+ ++RE K+ + +A E
Sbjct: 31 NYSPSRRGRKPTDKKKRKRHTWVKRPTTAYLYFVSKYRETLKEAGEVVPKAKIITQACAE 90
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKD 102
KW++M+E +K P++ + + + ++KD
Sbjct: 91 KWRNMNEEEKEPFLELSRRDRERWQKD 117
>gi|342874398|gb|EGU76412.1| hypothetical protein FOXB_13090 [Fusarium oxysporum Fo5176]
Length = 102
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K+ + KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +A
Sbjct: 14 KTKRGKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNEKQRA 72
Query: 87 PYVAKAEKRKVEYEKDMKNYNRRQPEEE 114
PY AKA K YE + + YN Q EEE
Sbjct: 73 PYEAKAAADKKRYEDEKQAYNADQEEEE 100
>gi|224043266|ref|XP_002194652.1| PREDICTED: high mobility group protein B1 [Taeniopygia guttata]
Length = 215
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K+ YEK+MKNY
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|148229870|ref|NP_001080585.1| high mobility group box 3 [Xenopus laevis]
gi|27882654|gb|AAH44009.1| Hmgb3-prov protein [Xenopus laevis]
Length = 202
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P ++ V K GE W ++S+++K PY K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GITIGDVAKKLGEMWNNLSDSEKQPYNNKGA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
>gi|356528116|ref|XP_003532651.1| PREDICTED: high mobility group protein B2-like [Glycine max]
Length = 234
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 34 DPNKPKRPASAFF----VFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
D KPK+ SAFF +FME+FR+++++ +P KS+ +GKA GEKWK+M+ +K Y
Sbjct: 41 DAMKPKKSPSAFFPLFSLFMEDFRKEFQEQNPDIKSMYDIGKACGEKWKTMTYEEKVKYY 100
Query: 90 AKAEKRKVEYEKDMKNYN 107
A ++++E+++ M +N
Sbjct: 101 DIASEKRIEFDRAMAKFN 118
>gi|118344422|ref|NP_001072036.1| transcription factor protein [Ciona intestinalis]
gi|70570508|dbj|BAE06614.1| transcription factor protein [Ciona intestinalis]
Length = 447
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K +DPN+PKRP SA+F+F+ +FR+ Y K+ + K GE W S+S+A+K PY
Sbjct: 259 KKPRDPNRPKRPPSAYFLFLADFRKNYPG---KSDPAKEITKKAGEAWNSLSDAEKTPYY 315
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSGEV 137
A+ + ++E+D++ Y + + + S + + D E GEV
Sbjct: 316 RSAQLVRAKWEQDLEAYKQ---SVKCGTLSRASSIQSDHDPVEMVGEV 360
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 18 NKKPAKAGRKSG--KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
N P++ GRK K K KRP +A+ F+ ++RE K+ + +A E
Sbjct: 168 NYSPSRRGRKPTDKKKRKRHTWVKRPTTAYLYFVSKYRETLKEAGEVVPKAKIITQACAE 227
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKD 102
KW++M+E +K P++ + + + ++KD
Sbjct: 228 KWRNMNEEEKEPFLELSRRDRERWQKD 254
>gi|169409528|gb|ACA57879.1| High mobility group protein B3 (predicted) [Callicebus moloch]
Length = 193
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K + S+ V K GE W +++++ K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTN-LGISIGDVAKKLGEMWNNLNDSKKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 42 ASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 100
SA+ F++ RE++KK +P+ + A K E+WK MS +K+ + A+ KV Y+
Sbjct: 13 TSAYAFFVQTCREEHKKKNPEAPVNFAEFSKKCPERWKIMSGKEKSKFDEMAKADKVRYD 72
Query: 101 KDMKNY 106
++MK+Y
Sbjct: 73 QEMKDY 78
>gi|348556930|ref|XP_003464273.1| PREDICTED: FACT complex subunit SSRP1-like [Cavia porcellus]
Length = 709
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K + + AK++ ++K K ++ K KDPN PKRP SA+ +++ RE+ K DHP
Sbjct: 515 KKRKQLKRAKMTKDRKSRKKTVEA-KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GI 572
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 573 SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|300122042|emb|CBK22616.2| unnamed protein product [Blastocystis hominis]
Length = 224
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 18 NKKP-AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
NK+P K K GK DP+KPK+P S + + E REQ KK++P+ K + + K GEK
Sbjct: 5 NKEPKTKENTKRGKKEVDPDKPKKPLSGYMRYCNEQREQVKKENPELK-LTEISKVLGEK 63
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP 111
WK +SE +K PY E K +Y+ M+ Y + P
Sbjct: 64 WKELSEEEKKPYQDAYEADKEKYDLQMEEYKKTHP 98
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 16/124 (12%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADK 85
+GK DPNKPKRP S++ +F + RE+ K+ +P NK + + G+ WK + E +K
Sbjct: 99 TGKKNADPNKPKRPLSSYIIFSNDKREEVKRKNPDMSNKEITTL---LGKMWKELPEEEK 155
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQPEEEE-------ESEKSMSEVNDE----DDDEEGS 134
Y + + K YE+ M Y R PE +E E++ +M +V+ E D +EE S
Sbjct: 156 QEYEKQHAEEKKAYEEKMGEYRREHPELKEKTPKKQKETKSTMKKVSSEEEAVDSNEEES 215
Query: 135 GEVF 138
+F
Sbjct: 216 ENIF 219
>gi|449534501|ref|XP_004174200.1| PREDICTED: high mobility group B protein 3-like [Cucumis sativus]
Length = 66
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 43/51 (84%), Gaps = 5/51 (9%)
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE-----EEEESEKSMSEVN 125
MS+A+KAPY+AKA+KRKVEYEK+MK YN++Q EE+ESEKSMSEVN
Sbjct: 1 MSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVN 51
>gi|5815432|gb|AAD52670.1|AF178849_1 high mobility group protein HMG1 [Gallus gallus]
Length = 214
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K+ YEK+MKNY
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|380083124|gb|AFD33645.1| high mobility group box 1, partial [Gallus gallus]
Length = 185
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K+ YEK+MKNY
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|66840992|emb|CAI64395.1| putative high mobility group protein [Triticum aestivum]
Length = 112
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KPKR + FF F+ EFR QY + HP+ K VAAV KA GEKW+SMS+ +KA Y K
Sbjct: 22 KPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVTKAAGEKWRSMSDEEKAKYGGK 76
>gi|45382473|ref|NP_990233.1| high mobility group protein B1 [Gallus gallus]
gi|326914268|ref|XP_003203448.1| PREDICTED: high mobility group protein B1-like [Meleagris
gallopavo]
gi|4140289|emb|CAA76978.1| high mobility group 1 protein [Gallus gallus]
gi|60098903|emb|CAH65282.1| hypothetical protein RCJMB04_15a21 [Gallus gallus]
Length = 215
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K+ YEK+MKNY
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|221219844|gb|ACM08583.1| High mobility group protein B2 [Salmo salar]
Length = 211
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K KSG+ KDPN PKRP SAFFVF EFR K++ P S+ K G W
Sbjct: 80 PPKGMAKSGRKKKDPNAPKRPPSAFFVFSAEFRPTVKQEFP-GCSIGQCAKKLGIMWGQQ 138
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
+ K P+ KA + + +Y+KDM Y
Sbjct: 139 TPTQKQPFEEKALRLREKYDKDMAAY 164
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
D NKPK SA+ F++ RE++K+ HP ++ + A K E+W++ + D+ + A
Sbjct: 5 DVNKPKGKTSAYAFFVQTCREEHKRKHPEQSVNFAEFSKQCSERWRASTATDRRRFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE+DM+ Y
Sbjct: 65 KNDKVRYERDMRGY 78
>gi|410256408|gb|JAA16171.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKRP S FF+F E R + K +P SV V K GE W ++++++K PY+ KA
Sbjct: 89 DPSAPKRPPSGFFLFSSEIRPKIKSTNP-GISVGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|145536343|ref|XP_001453899.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421632|emb|CAK86502.1| unnamed protein product [Paramecium tetraurelia]
Length = 236
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K +DPN PK+P +AFF+F +++R++ + +P+ K + + + G KW SMSE +K PY+
Sbjct: 44 KKERDPNAPKKPLTAFFLFNQKYRQKVVERNPEIK-LTQISQMAGNKWTSMSEQEKKPYL 102
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDE 127
+ K +Y++++K+YN + E + ++ SE DE
Sbjct: 103 DQYNAAKEKYDQELKDYNEKNGIETNDKKRKKSEKFDE 140
>gi|432113411|gb|ELK35821.1| FACT complex subunit SSRP1 [Myotis davidii]
Length = 709
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK+MS+ K +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKAMSKEKKEEWD 597
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 598 RKAEDARREYEKAMKEY 614
>gi|1806648|gb|AAB41544.1| structure-specific recognition protein 1 [Bos taurus]
Length = 460
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP SV + K GE WK MS+ K +
Sbjct: 290 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWKGMSKEKKEEWD 348
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 349 RKAEDARREYEKAMKEY 365
>gi|426245460|ref|XP_004023562.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Ovis
aries]
Length = 703
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP SV + K GE WK MS+ K +
Sbjct: 533 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWKGMSKEKKEEWD 591
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE+ + EYEK MK Y
Sbjct: 592 RKAEEARREYEKAMKEY 608
>gi|414585863|tpg|DAA36434.1| TPA: hypothetical protein ZEAMMB73_396569 [Zea mays]
Length = 119
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 61/103 (59%), Gaps = 9/103 (8%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV------AKA 92
KR + FF F+ EFR QY + HP+ K V V KA GEKW+SMS+ +KA Y KA
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGGSKKQDGKA 79
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSG 135
K++ K K + R+ +E E S KS SEV EDD+++G G
Sbjct: 80 SKKENTSSKKAK-ADVREGDEAEGSNKSKSEV--EDDEQDGRG 119
>gi|118343938|ref|NP_001071793.1| transcription factor protein [Ciona intestinalis]
gi|70570759|dbj|BAE06616.1| transcription factor protein [Ciona intestinalis]
Length = 164
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K ++ K+ K KD N PK+P +A+F+FM + R++ K++P + S+ + K G+KW+
Sbjct: 3 KTKRSSLKTLKFRKDKNAPKKPLTAYFIFMNDCRQKVIKENP-SLSITEISKLVGKKWRE 61
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYN 107
S DK P+ KA K + EY K ++ YN
Sbjct: 62 TSTKDKEPFNKKAAKLREEYNKKLEKYN 89
>gi|193787044|dbj|BAG51867.1| unnamed protein product [Homo sapiens]
Length = 176
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 51 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 109
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 110 AKLKEKYEKDIAAY 123
>gi|444705434|gb|ELW46861.1| FACT complex subunit SSRP1 [Tupaia chinensis]
Length = 704
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 528 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 581
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 582 GMSKEKKEEWDRKAEDARREYEKAMKEY 609
>gi|344299407|ref|XP_003421377.1| PREDICTED: FACT complex subunit SSRP1 [Loxodonta africana]
Length = 709
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|335281869|ref|XP_003353912.1| PREDICTED: FACT complex subunit SSRP1 [Sus scrofa]
Length = 709
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPTEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|229367846|gb|ACQ58903.1| High mobility group protein B2 [Anoplopoma fimbria]
Length = 213
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFFVF + R + K+++P S+ + K GE W + + DK PY A+A
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRPRIKEENP-GISIGDIAKKLGEFWSTQTSKDKVPYEARAG 150
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 151 KLKEKYEKDVAAY 163
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDPNKP+ S++ F+ RE++KK HP + A K E+WK+MS +K +
Sbjct: 2 TKDPNKPRGKTSSYAFFVATCREEHKKKHPGVSVGFAEFSKKCSERWKTMSAKEKVKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV YE++MK Y
Sbjct: 62 LAKNDKVRYEREMKTY 77
>gi|410973949|ref|XP_003993410.1| PREDICTED: FACT complex subunit SSRP1 [Felis catus]
Length = 709
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|383872505|ref|NP_001244820.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|402893460|ref|XP_003909913.1| PREDICTED: FACT complex subunit SSRP1 [Papio anubis]
gi|355566511|gb|EHH22890.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
mulatta]
gi|355752113|gb|EHH56233.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
fascicularis]
gi|380784229|gb|AFE63990.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|383421069|gb|AFH33748.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|384949008|gb|AFI38109.1| FACT complex subunit SSRP1 [Macaca mulatta]
Length = 709
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|301774634|ref|XP_002922750.1| PREDICTED: FACT complex subunit SSRP1-like [Ailuropoda melanoleuca]
Length = 709
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|348541671|ref|XP_003458310.1| PREDICTED: high mobility group-T protein-like [Oreochromis
niloticus]
Length = 206
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
+N PA+ G+K K KDPN PKRP SAFF+F EFR + K + P S+ V K GE
Sbjct: 75 MNYVPARGGKKK-KKYKDPNAPKRPPSAFFIFCSEFRPKVKGESP-GLSIGDVAKRLGEM 132
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W S + DK PY KA K K +YEKD+ Y
Sbjct: 133 WNSTAAEDKQPYEKKAAKLKEKYEKDIAAY 162
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP+ + + A K E+WK+MS +K +
Sbjct: 2 GKDPTKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSAKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A + K YE++M NY
Sbjct: 62 MARQDKARYEREMMNY 77
>gi|296218242|ref|XP_002755324.1| PREDICTED: FACT complex subunit SSRP1 [Callithrix jacchus]
Length = 709
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|452839855|gb|EME41794.1| hypothetical protein DOTSEDRAFT_74007 [Dothistroma septosporum
NZE10]
Length = 108
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K K+ TR +K +V+K GK KDPN PKR SA+ F E R++ + D+P K
Sbjct: 3 KEKATTRGSKKAVDKSAG------GKKKKDPNMPKRGLSAYMFFANEQRDKVRDDNPGIK 56
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
VGK GEKWK +SE KAPY AKA K YE++ Y
Sbjct: 57 -FGEVGKQLGEKWKGLSEKQKAPYEAKAAADKKRYEEEKAAYT 98
>gi|145541886|ref|XP_001456631.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424443|emb|CAK89234.1| unnamed protein product [Paramecium tetraurelia]
Length = 235
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K +DPN PK+P + FF+F +++RE+ +P+ K + + + G KW SMSE +K PYV
Sbjct: 43 KKERDPNAPKKPLTPFFLFNQKYREKVVDRNPEIK-LTQISQMAGNKWSSMSEQEKKPYV 101
Query: 90 AKAEKRKVEYEKDMKNYNRR 109
+ K +YE+++K+YN +
Sbjct: 102 DQYNAAKEKYEQELKDYNEK 121
>gi|155371817|ref|NP_001094511.1| FACT complex subunit SSRP1 [Bos taurus]
gi|151554654|gb|AAI49986.1| SSRP1 protein [Bos taurus]
gi|440894802|gb|ELR47155.1| FACT complex subunit SSRP1 [Bos grunniens mutus]
Length = 709
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP SV + K GE WK
Sbjct: 533 KKPLEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|332847763|ref|XP_003315517.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan troglodytes]
gi|397485725|ref|XP_003813991.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 207
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K KDPN PKRP S FF+F EF + K +P + V K E WK++
Sbjct: 80 PAKGGKK-----KDPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLSEMWKNL 133
Query: 81 SEADKAPYVAKAEKRKVEYEKDM 103
++++K PY+ +A K K +YEKD+
Sbjct: 134 NDSEKQPYITQAAKLKEKYEKDV 156
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +PK + A K E+WK+MS+ +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPKVPVNFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73
Query: 102 DMKNY 106
++K+Y
Sbjct: 74 EIKDY 78
>gi|440298630|gb|ELP91261.1| HMG (high mobility group) box domain containing protein, partial
[Entamoeba invadens IP1]
Length = 214
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
+ G+ +DPN PK+P + + +F+ E RE++++ P+ K + + K E W+ M
Sbjct: 102 SSVGQSFAITKQDPNLPKKPMTPYLMFLNEHREEFREKFPELK-ITEIAKKAAEIWRDMK 160
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNYNRR 109
E DK Y+ KA+K +Y ++MK YN R
Sbjct: 161 EEDKQVYLDKAKKATEKYLEEMKTYNER 188
>gi|384489718|gb|EIE80940.1| hypothetical protein RO3G_05645 [Rhizopus delemar RA 99-880]
Length = 176
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K K KDPN PKR S++ ++ + R + +HP K++ + K GE W +SE +KA
Sbjct: 44 KKKKVEKDPNAPKRNLSSYMLYSQAVRPKVAAEHPDMKAIE-IAKLVGEMWNKLSEKEKA 102
Query: 87 PYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDED 128
PY+ +AEK K+ +EK+ +Y EE++ E N E+
Sbjct: 103 PYIKQAEKEKIRFEKENASYKTTLASEEKQQPAKRKERNAEE 144
>gi|82658290|ref|NP_001032501.1| high mobility group protein B2 [Danio rerio]
gi|81294190|gb|AAI07992.1| Zgc:123215 [Danio rerio]
Length = 213
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFFVF + R + K D+P S+ + K GE W +S +K+PY KA
Sbjct: 91 DPNAPKRPPSAFFVFCSDHRPKVKGDNP-GISIGDIAKKLGEMWSKLSPKEKSPYEQKAM 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDVAAY 162
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDPNKP+ S++ F++ RE++KK +P + + + K E+W++MS +K +
Sbjct: 2 GKDPNKPRGKTSSYAFFVQTCREEHKKKNPGTSVNFSEFSKKCSERWRTMSSKEKGKFEE 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV Y+++MKNY
Sbjct: 62 MAKTDKVRYDREMKNY 77
>gi|296479522|tpg|DAA21637.1| TPA: structure specific recognition protein 1 [Bos taurus]
Length = 709
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP SV + K GE WK MS+ K +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWKGMSKEKKEEWD 597
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 598 RKAEDARREYEKAMKEY 614
>gi|345783817|ref|XP_859953.2| PREDICTED: FACT complex subunit SSRP1 isoform 4 [Canis lupus
familiaris]
Length = 711
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 535 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKADHP-GISITDLSKKAGEIWK 588
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 589 GMSKEKKEEWDRKAEDARREYEKAMKEY 616
>gi|281343903|gb|EFB19487.1| hypothetical protein PANDA_011742 [Ailuropoda melanoleuca]
Length = 607
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 516 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 569
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 570 GMSKEKKEEWDRKAEDARREYEKAMKEY 597
>gi|222087985|gb|ACM41855.1| high mobility group box 2-like protein [Epinephelus coioides]
Length = 212
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFFVF E R + K++ P S+ K GE W + S +KAPY AKA
Sbjct: 87 DPNAPKRPPSAFFVFCSEHRPRIKEECP-GISIGDTAKKLGELWSTQSSKEKAPYEAKAA 145
Query: 94 KRKVEYEKDMKNY 106
K K +YEK++ Y
Sbjct: 146 KLKEKYEKEVAAY 158
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
NKP+ S++ F+ + RE++K+ HP + A K E+WK+MS +KA + A+
Sbjct: 1 NKPRGKTSSYAFFIADCREEHKRKHPGTSVGFAEFSKKCSERWKTMSAKEKAKFEELAKT 60
Query: 95 RKVEYEKDMKNY 106
K+ Y+++MK Y
Sbjct: 61 DKIRYDREMKTY 72
>gi|229367676|gb|ACQ58818.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K +HP ++ K GE W S S +K PY KA
Sbjct: 89 KDPNAPKRPPSAFFLFCGDFRPKVKSEHP-GLTIGDTAKKLGEMWNSSSAENKQPYERKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 148 AKLKEKYDKDIVAY 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KPK S++ F++ RE++KK HP+ + + A K E+WK+MS+ K +
Sbjct: 3 KDPRKPKGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSQKGKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNYN 107
A+ KV YE+DMKNY+
Sbjct: 63 AKLDKVRYERDMKNYD 78
>gi|443724197|gb|ELU12309.1| hypothetical protein CAPTEDRAFT_56147, partial [Capitella teleta]
Length = 196
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
+D N+PKRP SA+F+++ FR + K P NK + +A GE WK ++E +KAPY
Sbjct: 93 GRDKNRPKRPQSAYFLWLAGFRTRMKDKIPVNKELL---RAAGEHWKRLTEVEKAPYEQM 149
Query: 92 AEKRKVEYEKDMKNYN 107
AE + +YE+ M+ YN
Sbjct: 150 AEGERRKYEEAMRQYN 165
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 20 KPAKAGRKSGKAAK--DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+P A K GK K DPN+PKRP SA+F ++ R + +K + VA K + W
Sbjct: 3 RPKGATTKGGKRKKNKDPNRPKRPTSAYFFYVAHCRAECEKRGERITRVAQWTKEISQVW 62
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
+ M+ D+ + AKA K YE+ M Y R
Sbjct: 63 REMTPEDRKGFDAKAVVDKARYEEQMNRYKGR 94
>gi|367043490|ref|XP_003652125.1| hypothetical protein THITE_126111 [Thielavia terrestris NRRL 8126]
gi|346999387|gb|AEO65789.1| hypothetical protein THITE_126111 [Thielavia terrestris NRRL 8126]
Length = 103
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Query: 21 PAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
P A KSGK KDPN PKR SA+ F E RE ++++P S VGK GE
Sbjct: 2 PKAAKGKSGKVEKRRGKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGE 60
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEES 117
+WK++S+ +APY AKA K YE + + YN + +EEES
Sbjct: 61 RWKALSDKQRAPYEAKAAADKKRYEDEKQAYNAQADGDEEES 102
>gi|229365968|gb|ACQ57964.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K +HP ++ K GE W S S +K PY KA
Sbjct: 89 KDPNAPKRPPSAFFLFCGDFRPKVKSEHP-GLTIGDTAKKLGEMWNSSSAENKQPYERKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 148 AKLKEKYDKDIVAY 161
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KPK S++ F++ RE++KK HP+ + + A K E+WK+MS+ +K +
Sbjct: 3 KDPRKPKGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSQKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNYN 107
A+ KV YE+DMKNY+
Sbjct: 63 AKLDKVRYERDMKNYD 78
>gi|417404085|gb|JAA48818.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 709
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 598 RKAEDARREYEKAMKEY 614
>gi|167384542|ref|XP_001736998.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165900416|gb|EDR26737.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 112
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN+PKRP + +F+++ E R K++HP K V + K E+WK++ E +K Y AKA+
Sbjct: 23 PNRPKRPQTPYFLYLHEHRASIKEEHPDAK-VTEIAKIASEQWKALGEEEKKEYQAKADA 81
Query: 95 RKVEYEKDMKNYN 107
K +Y+KDM+ Y
Sbjct: 82 AKEQYKKDMEKYT 94
>gi|310793467|gb|EFQ28928.1| HMG box protein [Glomerella graminicola M1.001]
Length = 103
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++++ +APY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKILGERWKALNDKQRAPYE 76
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEE 114
AKA K YE + + YN Q E+E
Sbjct: 77 AKAATDKKRYEDEKQAYNAEQEEDE 101
>gi|431918516|gb|ELK17735.1| 182 kDa tankyrase-1-binding protein [Pteropus alecto]
Length = 2600
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKLDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 598 RKAEDARREYEKAMKEY 614
>gi|426397135|ref|XP_004064781.1| PREDICTED: high mobility group protein B3-like [Gorilla gorilla
gorilla]
Length = 221
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + G+K KDPN KRP S FF+F EFR + K +P S+ + K GE W +
Sbjct: 100 PVEGGKK-----KDPNALKRPLSGFFLFCSEFRPKIKSTNP-GISIGDMAKKLGEMWINY 153
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ +K PY+ KA K +YEKD+ +Y
Sbjct: 154 SDREKQPYITKAADLKEKYEKDVADY 179
>gi|403254821|ref|XP_003920153.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Saimiri
boliviensis boliviensis]
Length = 826
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 650 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 703
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + EYEK MK Y
Sbjct: 704 GMSKEKKEEWDRKAEDARREYEKAMKEY 731
>gi|326475470|gb|EGD99479.1| nucleosome binding protein [Trichophyton tonsurans CBS 112818]
Length = 102
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+ + PY KA
Sbjct: 20 KDPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSDKQRVPYEEKA 78
Query: 93 EKRKVEYEKDMKNYNRRQPEEE 114
K YE + YN RQ +EE
Sbjct: 79 ATDKQRYEDEKAAYNSRQDDEE 100
>gi|148673911|gb|EDL05858.1| mCG144566 [Mus musculus]
Length = 240
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 115 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 173
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 174 AKLKEKYEKDIAAY 187
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 30 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 89
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 90 KADKARYEREMKTY 103
>gi|432102789|gb|ELK30264.1| High mobility group protein B1 [Myotis davidii]
Length = 245
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|351698285|gb|EHB01204.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 215
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDITAY 162
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ E +KK HP + + + K G E+WK++S +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCGEDHKKKHPDASVNFSEFSKKGSERWKTISAEEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|225195617|gb|ACN82086.1| high-mobility group box 1 [Carassius auratus]
gi|225195619|gb|ACN82087.1| high-mobility group box 1 [Megalobrama amblycephala]
gi|225195623|gb|ACN82089.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F EFR + K++ P S+ V K GE W S +K P+ KA
Sbjct: 78 KDPNAPKRPPSAFFIFCSEFRPKVKEETP-GLSIGDVAKKLGEMWNKTSAEEKQPFEKKA 136
Query: 93 EKRKVEYEKDMKNY 106
+ K +YEKD+ Y
Sbjct: 137 ARLKEKYEKDITAY 150
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK HP+ + + K E+WK+MS +K + A++ KV YE+
Sbjct: 2 SSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKQDKVRYER 61
Query: 102 DMKNY 106
+MKNY
Sbjct: 62 EMKNY 66
>gi|335892930|gb|AEH59760.1| high mobility group box 2 [Lethenteron camtschaticum]
Length = 194
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K RK+ KDPN PKRP SAFFVF E R + K DHP + + K GE W
Sbjct: 77 NYVPPKGKRKT----KDPNAPKRPPSAFFVFCSEHRPKVKADHP-GLGIGEIAKRLGEMW 131
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
++ K+PY KA K K +YEKD+ Y
Sbjct: 132 GLLTPETKSPYEKKAAKLKEKYEKDVAAY 160
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+P KP+ S++ F++ RE++KK HP+ + + A K E+WK+MS +KA + A
Sbjct: 5 EPGKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSPKEKARFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KADKARYDREMKNY 78
>gi|351710199|gb|EHB13118.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 191
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK +K KDPN KRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 80 PAKGSKKK----KDPNATKRPPSGFFLFCSEFHPKIKSTNP-GISIGDVAKKLGEMWNNL 134
Query: 81 SEADKAPYVAKAEKRKVEYEKDM 103
++++K PY+ KA K K +YEKD+
Sbjct: 135 NDSEKQPYITKAAKLKEKYEKDV 157
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P + A K E+WK++S +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPDVPVNFAEFSKKCSERWKTVSGKEKSKFDEMAKADKVHYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|159162414|pdb|1HME|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
gi|159162415|pdb|1HMF|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
Length = 77
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 60
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 61 AKLKEKYEKDIAAY 74
>gi|426236471|ref|XP_004012192.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 213
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGNVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|291392907|ref|XP_002712835.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 208
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK P KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDVAKKLGEMWNNTAAGDKQPCERKA 148
Query: 93 EKRKVEYEKDMKNYN 107
K KV+YEK + Y
Sbjct: 149 AKLKVKYEKGIAAYQ 163
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ E++KK HP + + + K E+WK+MS K + A
Sbjct: 5 DPKKPRGKMSSYTFFVQTCPEKHKKRHPDASVNFSEFSKKCSERWKTMSAKKKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKIY 78
>gi|3551257|dbj|BAA32827.1| 98b [Daucus carota]
Length = 502
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P KPK P SAFF+FM E R + K+V VGK GE+WK+M+E +KAPY A+K
Sbjct: 287 PLKPKHPVSAFFLFMNERRADLVAEK---KNVLEVGKITGEEWKNMTEKEKAPYEEMAKK 343
Query: 95 RKVEYEKDMKNYNRRQPEE 113
K +Y + M+ Y +++ EE
Sbjct: 344 NKNQYLQQMEVYKKKKDEE 362
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
M+ K K T N + K+ + +K K DPNKPKRPAS+F +F +E R+ ++
Sbjct: 382 MQLLKKKEKTENL-IKKTKEERQKKQKGEKKIVDPNKPKRPASSFLLFSKEARKTISEER 440
Query: 61 P--KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEE 114
P N ++ A+ KWK +S +K + KA Y+K+M+ YN+ EE
Sbjct: 441 PGINNSTLNALISV---KWKEISHEEKQLWNEKAAGAMEAYKKEMEEYNKTTAAEE 493
>gi|109098276|ref|XP_001102554.1| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMS 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|3342573|gb|AAC27651.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + + E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSERCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|301757910|ref|XP_002914802.1| PREDICTED: high mobility group protein B1-like [Ailuropoda
melanoleuca]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444729709|gb|ELW70116.1| High mobility group protein B1 [Tupaia chinensis]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK +
Sbjct: 65 KADKAHYEREMKTF 78
>gi|444707034|gb|ELW48343.1| High mobility group protein B1 [Tupaia chinensis]
Length = 203
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 136
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 137 AKLKEKYEKDIAAY 150
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK HP + + + K E+WK+MS +K + A+ K YE+
Sbjct: 2 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 61
Query: 102 DMKNY 106
+MK Y
Sbjct: 62 EMKTY 66
>gi|148709727|gb|EDL41673.1| mCG9102 [Mus musculus]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|3342575|gb|AAC27652.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE +KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREGHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|83014391|ref|XP_918585.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|417397281|gb|JAA45674.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 216
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 149
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 AKLKEKYEKDIAAY 163
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKN 105
+ K YE++MK
Sbjct: 65 KADKARYEREMKT 77
>gi|149030113|gb|EDL85190.1| rCG63106 [Rattus norvegicus]
Length = 201
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 136
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 137 AKLKEKYEKDIAAY 150
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK HP + + + K E+WK+MS +K + A+ K YE+
Sbjct: 2 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 61
Query: 102 DMKNY 106
+MK Y
Sbjct: 62 EMKTY 66
>gi|157820087|ref|NP_001102843.1| high mobility group box 1 like [Rattus norvegicus]
gi|149043247|gb|EDL96779.1| rCG50935 [Rattus norvegicus]
Length = 214
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIPAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|5764680|gb|AAC27653.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAEEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|74181373|dbj|BAE29962.1| unnamed protein product [Mus musculus]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++K+ HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKRKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|30584163|gb|AAP36330.1| Homo sapiens high-mobility group box 1 [synthetic construct]
gi|54697182|gb|AAV38963.1| high-mobility group box 1 [synthetic construct]
gi|54697184|gb|AAV38964.1| high-mobility group box 1 [synthetic construct]
gi|61367269|gb|AAX42974.1| high-mobility group box 1 [synthetic construct]
gi|61367275|gb|AAX42975.1| high-mobility group box 1 [synthetic construct]
gi|61371572|gb|AAX43692.1| high-mobility group box 1 [synthetic construct]
Length = 216
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|332863449|ref|XP_001169802.2| PREDICTED: high mobility group protein B1-like, partial [Pan
troglodytes]
Length = 174
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|149635755|ref|XP_001508702.1| PREDICTED: high mobility group protein B1-like [Ornithorhynchus
anatinus]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDAAVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|126327421|ref|XP_001367294.1| PREDICTED: high mobility group protein B1-like isoform 2
[Monodelphis domestica]
Length = 216
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|395520861|ref|XP_003764541.1| PREDICTED: high mobility group protein B1 [Sarcophilus harrisii]
Length = 230
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 104 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 162
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 163 AKLKEKYEKDIAAY 176
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 19 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 78
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 79 KADKVRYEREMKTY 92
>gi|70999478|ref|XP_754458.1| nucleosome binding protein (Nhp6a) [Aspergillus fumigatus Af293]
gi|74674416|sp|Q4WY33.1|NHP6_ASPFU RecName: Full=Non-histone chromosomal protein 6
gi|66852095|gb|EAL92420.1| nucleosome binding protein (Nhp6a), putative [Aspergillus fumigatus
Af293]
gi|159127475|gb|EDP52590.1| nucleosome binding protein (Nhp6a), putative [Aspergillus fumigatus
A1163]
Length = 104
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R++ ++++P S VGK GE+WK++S++++ PY KA
Sbjct: 20 KDPNAPKRGLSAYMFFANENRDKVREENP-GISFGQVGKMLGERWKALSDSERRPYEEKA 78
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEES 117
K YE + +YN Q E+EEES
Sbjct: 79 AADKKRYEDEKASYNAAQDEDEEES 103
>gi|5764678|gb|AAC27650.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+ S +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTKSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|123368|sp|P07156.1|HMGB1_CRIGR RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|49483|emb|CAA68441.1| high mobility group protein [Cricetulus griseus]
Length = 180
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 55 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 113
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 114 AKLKEKYEKDIAAY 127
>gi|431920962|gb|ELK18731.1| High mobility group protein B1 [Pteropus alecto]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|55639639|ref|XP_509611.1| PREDICTED: high mobility group protein B1 isoform 15 [Pan
troglodytes]
gi|114649261|ref|XP_001140156.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan
troglodytes]
gi|114649265|ref|XP_001140328.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan
troglodytes]
gi|114649269|ref|XP_001140491.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan
troglodytes]
gi|332841128|ref|XP_003314147.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|332841133|ref|XP_003314149.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|397513185|ref|XP_003826902.1| PREDICTED: high mobility group protein B1 isoform 1 [Pan paniscus]
gi|397513187|ref|XP_003826903.1| PREDICTED: high mobility group protein B1 isoform 2 [Pan paniscus]
gi|397513189|ref|XP_003826904.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan paniscus]
gi|397513191|ref|XP_003826905.1| PREDICTED: high mobility group protein B1 isoform 4 [Pan paniscus]
gi|397513193|ref|XP_003826906.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan paniscus]
gi|397513195|ref|XP_003826907.1| PREDICTED: high mobility group protein B1 isoform 6 [Pan paniscus]
gi|397513197|ref|XP_003826908.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan paniscus]
gi|410047671|ref|XP_003952424.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047673|ref|XP_003952425.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047675|ref|XP_003952426.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047677|ref|XP_003952427.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047679|ref|XP_003952428.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047682|ref|XP_003952429.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047686|ref|XP_003952430.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047688|ref|XP_003952431.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|48145843|emb|CAG33144.1| HMGB1 [Homo sapiens]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|620098|emb|CAA56631.1| high mobility group protein [Mus musculus]
gi|71681313|gb|AAI00313.1| High mobility group box 1 [Mus musculus]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|4504425|ref|NP_002119.1| high mobility group protein B1 [Homo sapiens]
gi|50950133|ref|NP_001002937.1| high mobility group protein B1 [Canis lupus familiaris]
gi|126352708|ref|NP_001075304.1| high mobility group protein B1 [Equus caballus]
gi|281182655|ref|NP_001162380.1| high mobility group protein B1 [Papio anubis]
gi|284005385|ref|NP_001164752.1| high mobility group protein B1 [Oryctolagus cuniculus]
gi|388453289|ref|NP_001252735.1| high mobility group protein B1 [Macaca mulatta]
gi|291397530|ref|XP_002715999.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|291399645|ref|XP_002716268.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|296203653|ref|XP_002748994.1| PREDICTED: high mobility group protein B1 isoform 2 [Callithrix
jacchus]
gi|297714815|ref|XP_002833818.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
gi|332242218|ref|XP_003270282.1| PREDICTED: high mobility group protein B1-like isoform 1 [Nomascus
leucogenys]
gi|332242222|ref|XP_003270284.1| PREDICTED: high mobility group protein B1-like isoform 3 [Nomascus
leucogenys]
gi|332242226|ref|XP_003270286.1| PREDICTED: high mobility group protein B1-like isoform 5 [Nomascus
leucogenys]
gi|332242228|ref|XP_003270287.1| PREDICTED: high mobility group protein B1-like isoform 6 [Nomascus
leucogenys]
gi|332242230|ref|XP_003270288.1| PREDICTED: high mobility group protein B1-like isoform 7 [Nomascus
leucogenys]
gi|332242232|ref|XP_003270289.1| PREDICTED: high mobility group protein B1-like isoform 8 [Nomascus
leucogenys]
gi|344284506|ref|XP_003414007.1| PREDICTED: high mobility group protein B1-like [Loxodonta africana]
gi|348583405|ref|XP_003477463.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
gi|426375079|ref|XP_004054375.1| PREDICTED: high mobility group protein B1-like isoform 1 [Gorilla
gorilla gorilla]
gi|426375081|ref|XP_004054376.1| PREDICTED: high mobility group protein B1-like isoform 2 [Gorilla
gorilla gorilla]
gi|426375083|ref|XP_004054377.1| PREDICTED: high mobility group protein B1-like isoform 3 [Gorilla
gorilla gorilla]
gi|426375085|ref|XP_004054378.1| PREDICTED: high mobility group protein B1-like isoform 4 [Gorilla
gorilla gorilla]
gi|426375087|ref|XP_004054379.1| PREDICTED: high mobility group protein B1-like isoform 5 [Gorilla
gorilla gorilla]
gi|426375089|ref|XP_004054380.1| PREDICTED: high mobility group protein B1-like isoform 6 [Gorilla
gorilla gorilla]
gi|426375091|ref|XP_004054381.1| PREDICTED: high mobility group protein B1-like isoform 7 [Gorilla
gorilla gorilla]
gi|426375093|ref|XP_004054382.1| PREDICTED: high mobility group protein B1-like isoform 8 [Gorilla
gorilla gorilla]
gi|441624073|ref|XP_004088962.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624077|ref|XP_004088963.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624084|ref|XP_004088964.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624090|ref|XP_004088965.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624094|ref|XP_004088966.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|123369|sp|P09429.3|HMGB1_HUMAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|61213476|sp|Q6YKA4.3|HMGB1_CANFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|75076928|sp|Q4R844.3|HMGB1_MACFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|119370722|sp|Q08IE6.3|HMGB1_HORSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028296|sp|B0CM99.1|HMGB1_CALJA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028297|sp|B1MTB0.1|HMGB1_CALMO RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028298|sp|A9RA84.1|HMGB1_PAPAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|32327|emb|CAA31110.1| unnamed protein product [Homo sapiens]
gi|1435197|gb|AAB08987.1| non-histone chromatin protein HMG1 [Homo sapiens]
gi|13097234|gb|AAH03378.1| High-mobility group box 1 [Homo sapiens]
gi|21410205|gb|AAH30981.1| High-mobility group box 1 [Homo sapiens]
gi|30582719|gb|AAP35586.1| high-mobility group box 1 [Homo sapiens]
gi|37380997|gb|AAQ91389.1| high mobility group protein 1 [Homo sapiens]
gi|37548602|gb|AAN11296.1| high mobility group protein B1 [Canis lupus familiaris]
gi|37722533|gb|AAN11319.1| high mobility group B1 protein [Canis lupus familiaris]
gi|44890726|gb|AAH66889.1| High-mobility group box 1 [Homo sapiens]
gi|45709178|gb|AAH67732.1| High-mobility group box 1 [Homo sapiens]
gi|51476884|emb|CAH18408.1| hypothetical protein [Homo sapiens]
gi|54697178|gb|AAV38961.1| high-mobility group box 1 [Homo sapiens]
gi|60654989|gb|AAX32058.1| high mobility group box 1 [synthetic construct]
gi|61357252|gb|AAX41359.1| high-mobility group box 1 [synthetic construct]
gi|67968740|dbj|BAE00728.1| unnamed protein product [Macaca fascicularis]
gi|115354285|dbj|BAF33339.1| high-mobility group box 1 [Equus caballus]
gi|119628862|gb|EAX08457.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628864|gb|EAX08459.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628865|gb|EAX08460.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628866|gb|EAX08461.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628867|gb|EAX08462.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|121073803|gb|ABM47301.1| high mobility group box 1 protein [Homo sapiens]
gi|152112978|gb|ABS29271.1| high-mobility group box 1 [Homo sapiens]
gi|158256420|dbj|BAF84183.1| unnamed protein product [Homo sapiens]
gi|162415900|gb|ABX89266.1| high-mobility group box 1 (predicted) [Papio anubis]
gi|165934066|gb|ABY74560.1| high-mobility group box 1 (predicted) [Callithrix jacchus]
gi|169402702|gb|ACA53510.1| high-mobility group box 1 (predicted) [Callicebus moloch]
gi|183396417|gb|ACC62098.1| high-mobility group box 1 (predicted) [Rhinolophus ferrumequinum]
gi|193783763|dbj|BAG53745.1| unnamed protein product [Homo sapiens]
gi|196050399|gb|ACG64310.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
gi|216397586|gb|ACJ72830.1| high-mobility group box 1 (predicted) [Oryctolagus cuniculus]
gi|261858262|dbj|BAI45653.1| high-mobility group box 1 [synthetic construct]
gi|335775462|gb|AEH58580.1| high mobility group protein B1-like protein [Equus caballus]
gi|351700460|gb|EHB03379.1| High mobility group protein B1 [Heterocephalus glaber]
gi|387542840|gb|AFJ72047.1| high mobility group protein B1 [Macaca mulatta]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|402854944|ref|XP_003892110.1| PREDICTED: high mobility group protein B1-like isoform 1 [Papio
anubis]
gi|402854946|ref|XP_003892111.1| PREDICTED: high mobility group protein B1-like isoform 2 [Papio
anubis]
Length = 214
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|397495503|ref|XP_003818592.1| PREDICTED: high mobility group protein B1-like [Pan paniscus]
Length = 209
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|348551709|ref|XP_003461672.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
Length = 214
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|109510563|ref|XP_001059688.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343404|ref|XP_003754879.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 213
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|41386729|ref|NP_788785.1| high mobility group protein B1 [Bos taurus]
gi|410947173|ref|XP_003980327.1| PREDICTED: high mobility group protein B1 [Felis catus]
gi|123367|sp|P10103.3|HMGB1_BOVIN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|417|emb|CAA31284.1| unnamed protein product [Bos taurus]
gi|73586656|gb|AAI02930.1| HMGB1 protein [Bos taurus]
gi|146231904|gb|ABQ13027.1| high-mobility group box 1 [Bos taurus]
gi|296481787|tpg|DAA23902.1| TPA: high mobility group protein B1 [Bos taurus]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|6754208|ref|NP_034569.1| high mobility group protein B1 [Mus musculus]
gi|6981026|ref|NP_037095.1| high mobility group protein B1 [Rattus norvegicus]
gi|407262920|ref|XP_003945388.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
gi|52783618|sp|P63159.2|HMGB1_RAT RecName: Full=High mobility group protein B1; AltName:
Full=Amphoterin; AltName: Full=Heparin-binding protein
p30; AltName: Full=High mobility group protein 1;
Short=HMG-1
gi|52783747|sp|P63158.2|HMGB1_MOUSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|9082303|gb|AAF82799.1|AF275734_1 amphoterin [Rattus norvegicus]
gi|53382|emb|CAA78042.1| non-histone chromosomal high-mobility group 1 protein [Mus
musculus]
gi|56365|emb|CAA68526.1| unnamed protein product [Rattus norvegicus]
gi|202885|gb|AAA40729.1| Amphoterin [Rattus norvegicus]
gi|208488|gb|AAA73006.1| high mobility group 1 protein [synthetic construct]
gi|437102|gb|AAA20508.1| HMG-1 [Mus musculus]
gi|13879238|gb|AAH06586.1| High mobility group box 1 [Mus musculus]
gi|14250281|gb|AAH08565.1| High mobility group box 1 [Mus musculus]
gi|26332344|dbj|BAC29902.1| unnamed protein product [Mus musculus]
gi|26351305|dbj|BAC39289.1| unnamed protein product [Mus musculus]
gi|38512146|gb|AAH61779.1| High mobility group box 1 [Rattus norvegicus]
gi|51859468|gb|AAH81839.1| High mobility group box 1 [Rattus norvegicus]
gi|52789475|gb|AAH83067.1| High mobility group box 1 [Mus musculus]
gi|54648288|gb|AAH85090.1| High mobility group box 1 [Mus musculus]
gi|56788766|gb|AAH88402.1| High mobility group box 1 [Rattus norvegicus]
gi|61403558|gb|AAH91741.1| High mobility group box 1 [Mus musculus]
gi|62739258|gb|AAH94030.1| High mobility group box 1 [Mus musculus]
gi|74186113|dbj|BAE34226.1| unnamed protein product [Mus musculus]
gi|84040262|gb|AAI10668.1| Hmgb1 protein [Mus musculus]
gi|84105496|gb|AAI11469.1| High mobility group box 1 [Mus musculus]
gi|149034811|gb|EDL89531.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034812|gb|EDL89532.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034813|gb|EDL89533.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|195539712|gb|AAI68143.1| High mobility group box 1 [Rattus norvegicus]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|380793129|gb|AFE68440.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|380793127|gb|AFE68439.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|190195542|gb|ACE73639.1| high-mobility group box 1 (predicted) [Sorex araneus]
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|119628863|gb|EAX08458.1| high-mobility group box 1, isoform CRA_b [Homo sapiens]
Length = 206
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|26341410|dbj|BAC34367.1| unnamed protein product [Mus musculus]
Length = 178
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|321476548|gb|EFX87508.1| hypothetical protein DAPPUDRAFT_306496 [Daphnia pulex]
Length = 191
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKR SAFF F + R K+ HP+ ++ + K G +W +A KA Y
Sbjct: 94 KQVKDPNAPKRSLSAFFWFCHDLRGHVKEQHPEY-TLGEIAKELGRRWGVSDDATKAQYA 152
Query: 90 AKAEKRKVEYEKDMKNY 106
AKAE+ + YE+DM Y
Sbjct: 153 AKAEQDRARYERDMNAY 169
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY 88
+A D NKP+ +A+ FM+ RE++K +P +N + +WK M+E DK +
Sbjct: 3 RAKGDSNKPRGRMTAYAYFMQTCREEHKNKYPDENVVFLEFSRRCAGQWKLMTENDKKRF 62
Query: 89 VAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSGEVFFWGCFDF 145
AE+ K+ +E +M++Y QP + + + + + + S FFW C D
Sbjct: 63 QGMAERDKLRFENEMRHY---QPPQGATGRGTKRKQVKDPNAPKRSLSAFFWFCHDL 116
>gi|146163497|ref|XP_001011529.2| HMG box family protein [Tetrahymena thermophila]
gi|146146042|gb|EAR91284.2| HMG box family protein [Tetrahymena thermophila SB210]
Length = 2400
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 9 DTRNAKLSVNKKP--AKAGRKSG----KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPK 62
DT L+ + P K G KSG KDP+ PK+P++A+ ++ + +E++ + +P
Sbjct: 2173 DTHTFPLASHDVPLKKKTGNKSGVPKNSEIKDPDMPKKPSTAYILYFKNRKEKFLQQYP- 2231
Query: 63 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP 111
N + + K ++W +S + P++ AEK K++Y + MK Y + P
Sbjct: 2232 NFGITEITKLIAKEWSELSREKQIPFLRDAEKAKLDYIERMKEYASKHP 2280
>gi|167744990|pdb|2YRQ|A Chain A, Solution Structure Of The Tandem Hmg Box Domain From Human
High Mobility Group Protein B1
Length = 173
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 97 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 155
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 156 AKLKEKYEKDIAAY 169
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 12 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 71
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 72 KADKARYEREMKTY 85
>gi|600761|gb|AAA57042.1| high mobility group 1 protein [Mus musculus]
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|302684321|ref|XP_003031841.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune H4-8]
gi|300105534|gb|EFI96938.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune H4-8]
Length = 114
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 11/103 (10%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
KA KDPN PKR SA+ F +++RE+ K ++P + S +GK G KWK M E +K PYV
Sbjct: 23 KAKKDPNAPKRALSAYMFFSQDWRERVKAENP-DASFGELGKILGAKWKEMDEDEKKPYV 81
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEE 132
AKA K K E D Y+ EK +E ++ D+D+E
Sbjct: 82 AKAAKDKERAEADKAAYD----------EKKSAEASEADEDDE 114
>gi|148682766|gb|EDL14713.1| mCG116825 [Mus musculus]
Length = 162
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 41 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 99
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 100 AKLKEKYEKDIAAY 113
>gi|395858039|ref|XP_003801382.1| PREDICTED: FACT complex subunit SSRP1 [Otolemur garnettii]
Length = 710
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K +DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K +
Sbjct: 539 KKGRDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 598 RKAEDARREYEKAMKEY 614
>gi|149691739|ref|XP_001488130.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 212
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+P KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 EPKKPRGRMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|26350077|dbj|BAC38678.1| unnamed protein product [Mus musculus]
Length = 181
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|440804471|gb|ELR25348.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 205
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR +A+ +F +E R Q K DHP VGK GE W ++ + DK Y A
Sbjct: 7 KDPNAPKRAMTAYMLFSQEKRTQIKTDHP-TVGFGQVGKLLGEAWAALPDGDKRKYNELA 65
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEESEK 119
K K+ Y+K+ Y PE +E E+
Sbjct: 66 AKDKIRYQKEAAQYKEDHPESSDEEER 92
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PK+P SAFF F ++ R + K ++P + S +GK GE+W + ++ + A
Sbjct: 100 KDPNAPKKPCSAFFHFSKKMRPRIKDENP-DASFGQLGKIIGEQWSKLGADERKEFETLA 158
Query: 93 EKRKVEYEKDMKNYN 107
K Y K+MK+Y
Sbjct: 159 AADKERYAKEMKDYQ 173
>gi|402865885|ref|XP_003897133.1| PREDICTED: high mobility group protein B1-like [Papio anubis]
Length = 221
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 96 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 154
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 155 AKLKEKYEKDIAAY 168
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK +
Sbjct: 65 KADKARYEREMKTW 78
>gi|51592117|ref|NP_001004034.1| high mobility group protein B1 [Sus scrofa]
gi|123371|sp|P12682.3|HMGB1_PIG RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|164490|gb|AAA31050.1| non-histone protein HMG1 [Sus scrofa]
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKHPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|74628491|sp|Q7S045.1|NHP6_NEUCR RecName: Full=Non-histone chromosomal protein 6
gi|336464617|gb|EGO52857.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2508]
gi|350296712|gb|EGZ77689.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2509]
Length = 103
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+ +APY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSDKQRAPYE 76
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEE 114
AKA K YE + + YN EEE
Sbjct: 77 AKAAADKKRYEDEKQAYNAEADEEE 101
>gi|300677966|gb|ADK27290.1| high-mobility-group B1a [Gekko japonicus]
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87
S K KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W + + DK P
Sbjct: 85 SKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAGDDKQP 143
Query: 88 YVAKAEKRKVEYEKDMKNY 106
+ KA K K +YEKD+ Y
Sbjct: 144 FEKKAAKLKEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MKNY
Sbjct: 65 KGDKVRYEREMKNY 78
>gi|402875874|ref|XP_003901718.1| PREDICTED: high mobility group protein B2-like, partial [Papio
anubis]
Length = 248
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 127 PNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSQQSAKDKQPYEQKAAK 185
Query: 95 RKVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 186 LKEKYEKDIAAY 197
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 24 AGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
GR+S K DPNKP+ S++ F++ RE++K+ HP + A K E+WK+MS
Sbjct: 29 GGRRSVTMGKGDPNKPRGKMSSYAFFVQTCREEHKEKHPDSSVGFAEFSKKCSERWKTMS 88
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNY 106
+K+ + A+ KV Y+++MKNY
Sbjct: 89 AKEKSKFEGMAKSGKVRYDREMKNY 113
>gi|296479353|tpg|DAA21468.1| TPA: high-mobility group box 1-like [Bos taurus]
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAVDDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++ K HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KVDKARYEREMKTY 78
>gi|328350132|emb|CCA36532.1| Hepatocyte growth factor-regulated tyrosine kinase substrate
[Komagataella pastoris CBS 7435]
Length = 725
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 9 DTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA 68
+ NAK ++ ++ K GRK KDPN PKR SA+ F E R+ + ++P +
Sbjct: 624 NNTNAKGTMAERRTKTGRKK----KDPNAPKRSLSAYMFFANEQRDIVRSENPGIQ-FGE 678
Query: 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEE 115
+GK GEKWK++ KAPY +KAE+ K YE + Y ++Q EEEE
Sbjct: 679 IGKLLGEKWKALDAEGKAPYESKAEEDKKRYELEKAEYFKKQHEEEE 725
>gi|303304752|emb|CBD77423.1| high mobility group box 2 protein [Plecoglossus altivelis]
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFFVF + R + K ++P S+ + K GE W + DK PY AKA
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRARIKGENP-GISIGDIAKKLGELWSKQTPKDKQPYEAKAG 150
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 151 KLKEKYEKDVAAY 163
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDPNKP+ S++ F++ RE++KK HP + + + K E+WK+MS +K +
Sbjct: 3 GKDPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFSEFSKKCSERWKTMSAKEKVKFED 62
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV Y+++MK Y
Sbjct: 63 LAKGDKVRYDREMKGY 78
>gi|410057418|ref|XP_003954213.1| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 210
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP SV V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSVGDVAKKLGEMWNNAAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|410057780|ref|XP_003954279.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Pan
troglodytes]
Length = 709
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + +YEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|348566777|ref|XP_003469178.1| PREDICTED: high mobility group protein B2-like [Cavia porcellus]
Length = 211
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 PNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 151
Query: 95 RKVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 LKEKYEKDIAAY 163
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|449501868|ref|XP_004174468.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1
[Taeniopygia guttata]
Length = 705
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE W
Sbjct: 526 DRKPRKKQPES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKKAGELW 583
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
K+MS+ K + KAE + +YEK MK Y+
Sbjct: 584 KAMSKEKKEEWDRKAEDARRDYEKAMKEYS 613
>gi|149245546|ref|XP_001527250.1| hypothetical protein LELG_02079 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449644|gb|EDK43900.1| hypothetical protein LELG_02079 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 187
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
K +DP+ PKRP++A+ VF E+ +E+ K D P++K ++ + E WKS+SE ++ PY
Sbjct: 62 TKKPRDPDLPKRPSNAYLVFCEQEKERLKLDDPESKDLS---RTMTEAWKSLSEEERRPY 118
Query: 89 VAKAEKRKVEYEKDMKNYNRRQ 110
E +V Y+++M YNR++
Sbjct: 119 YKLYEDDRVRYQREMDEYNRKK 140
>gi|45935025|gb|AAS79547.1| At4g11080 [Arabidopsis thaliana]
gi|46367464|emb|CAG25858.1| hypothetical protein [Arabidopsis thaliana]
Length = 450
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK+P SA+ ++ E R K + NKSV V K GE+WK++SE KAPY A+
Sbjct: 246 DPLKPKQPISAYLIYANERRAALKGE---NKSVIEVAKITGEEWKNLSEEQKAPYDKMAK 302
Query: 94 KRKVEYEKDMKNYNRRQPEE 113
K K Y ++M+ Y R + EE
Sbjct: 303 KNKEIYLQEMEGYKRTKEEE 322
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+P S++F+F ++ R+ ++HP N +V A KW + E +K Y +K
Sbjct: 372 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTA---HITLKWMELGEEEKQVYNSK 428
Query: 92 AEKRKVEYEKDMKNYNR 108
A Y+K+++ YN+
Sbjct: 429 AAALMEAYKKEVEEYNK 445
>gi|15237042|ref|NP_192846.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266789|sp|Q9T012.1|HMG13_ARATH RecName: Full=High mobility group B protein 13; AltName:
Full=Nucleosome/chromatin assembly factor group D 13
gi|4850287|emb|CAB43043.1| 98b like protein [Arabidopsis thaliana]
gi|7267807|emb|CAB81209.1| 98b like protein [Arabidopsis thaliana]
gi|22136604|gb|AAM91621.1| putative 98b protein [Arabidopsis thaliana]
gi|332657570|gb|AEE82970.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 446
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK+P SA+ ++ E R K + NKSV V K GE+WK++SE KAPY A+
Sbjct: 242 DPLKPKQPISAYLIYANERRAALKGE---NKSVIEVAKMAGEEWKNLSEEKKAPYDQMAK 298
Query: 94 KRKVEYEKDMKNYNRRQPEE 113
K K Y ++M+ Y R + EE
Sbjct: 299 KNKEIYLQEMEGYKRTKEEE 318
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+P S++F+F ++ R+ ++HP N +V A KW + E +K Y +K
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTA---HISLKWMELGEEEKQVYNSK 424
Query: 92 AEKRKVEYEKDMKNYNR 108
A + Y+K+++ YN+
Sbjct: 425 AAELMEAYKKEVEEYNK 441
>gi|112491006|pdb|2GZK|A Chain A, Structure Of A Complex Of Tandem Hmg Boxes And Dna
Length = 159
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87
+ K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK P
Sbjct: 79 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQP 137
Query: 88 YVAKAEKRKVEYEKDMKNY 106
Y KA K K +YEKD+ Y
Sbjct: 138 YEKKAAKLKEKYEKDIAAY 156
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
KRP +AF V+ + R + ++P+ ++ + + K G +WK ++EA+K P+ +A+K +
Sbjct: 6 KRPMNAFIVWSRDQRRKMALENPRMRN-SEISKQLGYQWKMLTEAEKWPFFQEAQKLQAM 64
Query: 99 YEKDMKNYNRRQPE 112
+ + NY R+ E
Sbjct: 65 HREKYPNYKYRKGE 78
>gi|4507241|ref|NP_003137.1| FACT complex subunit SSRP1 [Homo sapiens]
gi|397512296|ref|XP_003826485.1| PREDICTED: FACT complex subunit SSRP1 [Pan paniscus]
gi|426368405|ref|XP_004051198.1| PREDICTED: FACT complex subunit SSRP1 [Gorilla gorilla gorilla]
gi|730840|sp|Q08945.1|SSRP1_HUMAN RecName: Full=FACT complex subunit SSRP1; AltName:
Full=Chromatin-specific transcription elongation factor
80 kDa subunit; AltName: Full=Facilitates chromatin
transcription complex 80 kDa subunit; Short=FACT 80 kDa
subunit; Short=FACTp80; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; Short=hSSRP1; AltName: Full=T160
gi|184242|gb|AAA58660.1| high mobility group box [Homo sapiens]
gi|13477285|gb|AAH05116.1| Structure specific recognition protein 1 [Homo sapiens]
gi|119594140|gb|EAW73734.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|119594141|gb|EAW73735.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|123993967|gb|ABM84585.1| structure specific recognition protein 1 [synthetic construct]
gi|123998313|gb|ABM86758.1| structure specific recognition protein 1 [synthetic construct]
gi|410226712|gb|JAA10575.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410226714|gb|JAA10576.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262712|gb|JAA19322.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262714|gb|JAA19323.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305268|gb|JAA31234.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305270|gb|JAA31235.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351021|gb|JAA42114.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351025|gb|JAA42116.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 709
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + +YEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|358379174|gb|EHK16855.1| hypothetical protein TRIVIDRAFT_217092 [Trichoderma virens Gv29-8]
Length = 102
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 14 KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAG 73
K++ +K+ AK G K + KDPN PKR SA+ F E RE ++++P S VGK
Sbjct: 3 KVAASKRGAKDGGKK-RTKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLL 60
Query: 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEE 113
GE+WK++++ +APY AKA K YE + + YN Q E+
Sbjct: 61 GERWKALNDKQRAPYEAKAAADKKRYEDEKQAYNADQEED 100
>gi|148680486|gb|EDL12433.1| mCG1219 [Mus musculus]
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ ++ F++ RE++KK HP + + + K E+WK+M +K + A
Sbjct: 5 DPKKPRGKMYSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMYAKEKGKFEDIA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|297688746|ref|XP_002821837.1| PREDICTED: FACT complex subunit SSRP1 isoform 2 [Pongo abelii]
Length = 709
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + +YEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|332252411|ref|XP_003275348.1| PREDICTED: FACT complex subunit SSRP1 [Nomascus leucogenys]
Length = 709
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + +YEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|60552474|gb|AAH91486.1| SSRP1 protein, partial [Homo sapiens]
Length = 633
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + +YEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|410351023|gb|JAA42115.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 712
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 536 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 589
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + +YEK MK Y
Sbjct: 590 GMSKEKKEEWDRKAEDARRDYEKAMKEY 617
>gi|239606992|gb|EEQ83979.1| nucleosome binding protein [Ajellomyces dermatitidis ER-3]
Length = 105
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E +APY AKA
Sbjct: 19 KDPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNEKQRAPYEAKA 77
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEESEKS 120
K YE + +YN R+ ++++ E S
Sbjct: 78 AADKKRYEDEKASYNARRKAQDDDDESS 105
>gi|109490746|ref|XP_001074778.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392351213|ref|XP_003750876.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 211
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PK P SAFF+F E+R + K +HP S+ V K GE W + + DK PY A
Sbjct: 90 KDPNAPKTPPSAFFLFCSEYRPKIKGEHP-GLSIGDVVKKLGEMWTNTAADDKQPYEKMA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|397475678|ref|XP_003809257.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
Length = 165
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKRP S FF+F E R + K +P SV V K GE W ++++++K PY+ KA
Sbjct: 66 DPSAPKRPPSGFFLFSSEIRPKIKSTNP-GISVGDVAKKLGEMWNNLNDSEKQPYITKAA 124
Query: 94 KRKVEYEKDM 103
K K +YEKD+
Sbjct: 125 KLKEKYEKDV 134
>gi|444729655|gb|ELW70064.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E+ + K++HP + S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNVPKRPPLAFFLFCSEYHPKIKEEHP-DLSIGDVAKILGEMWNNTAADDKQPY-EKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDIAAY 161
>gi|109469394|ref|XP_001076232.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392338825|ref|XP_003753645.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 214
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTASDDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD Y
Sbjct: 149 AKLKEKYEKDTAAY 162
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + V K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|91091374|ref|XP_973014.1| PREDICTED: similar to AGAP012335-PA [Tribolium castaneum]
Length = 712
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 6/91 (6%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
+V++KP +K K +KD NKPKRP++AF +++ E R++ K D+P K + + K GGE
Sbjct: 534 TVSEKPR---QKRAKKSKDENKPKRPSTAFMLWLNEMRDKIKADNPGIK-ITEIAKKGGE 589
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
WK + DK+ + KA K K EY K MK Y
Sbjct: 590 MWKELK--DKSEWEGKAAKAKEEYNKAMKEY 618
>gi|327296079|ref|XP_003232734.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS 118892]
gi|326465045|gb|EGD90498.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS 118892]
Length = 102
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+ + PY KA
Sbjct: 20 KDPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSDKQRVPYEEKA 78
Query: 93 EKRKVEYEKDMKNYNRRQPEEE 114
K YE + YN RQ ++E
Sbjct: 79 ATDKQRYEDEKAAYNSRQDDDE 100
>gi|145540136|ref|XP_001455758.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423566|emb|CAK88361.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQY--------KKDHPKNKSVAAVGKAGGEKWKSMS 81
K +DPN PKRP + FF+F +++R++ ++D+ + + + G+KW SMS
Sbjct: 25 KKERDPNAPKRPLTPFFLFSQKYRDKVLERNPGIDQRDYSLEVKLTQISQMAGQKWNSMS 84
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNYN 107
E +K PYV + + K +Y+ D+K YN
Sbjct: 85 EEEKQPYVDQYNEAKNKYDGDLKVYN 110
>gi|444518919|gb|ELV12461.1| High mobility group protein B3 [Tupaia chinensis]
Length = 185
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 7/86 (8%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K +DPN PKRP S FF+F EF + + ++P S+ V K GE W +
Sbjct: 80 PAKGGKKK----RDPNAPKRPPSGFFLFCSEFCPKIRSNNP-GISIGDVAKKLGEMWNNK 134
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+++K PY KA K++YEKD+ +Y
Sbjct: 135 SDSEKQPYNTKAT--KLKYEKDVADY 158
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ A K G E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYTFFVQTCREKHKKKNPEVPVKFAEFSKKGSERWKTMSGKEKSKFDEMAKVNKVHYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|440298682|gb|ELP91313.1| hypothetical protein EIN_153200 [Entamoeba invadens IP1]
Length = 185
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPK+P +A+ +++ E R + K+ P K V V K GE WK+M E DK PY KA+
Sbjct: 96 DPNKPKKPQTAYMLYLNEHRAEIKEKFPDMK-VTEVAKKAGENWKAMGEEDKKPYQDKAD 154
Query: 94 KRKVEYEKDMKNY 106
K K ++ +MK Y
Sbjct: 155 KAKETWKTEMKKY 167
>gi|45360483|ref|NP_988904.1| high mobility group box 2 [Xenopus (Silurana) tropicalis]
gi|38181929|gb|AAH61601.1| high-mobility group box 2 [Xenopus (Silurana) tropicalis]
Length = 212
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R Q K + P S+ K GE W + DK PY KA
Sbjct: 92 DPNAPKRPPSAFFLFCSEHRPQIKSESP-GLSIGDTAKKLGEMWSEQTPKDKLPYEQKAA 150
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 151 KLKEKYEKDVAAY 163
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KNDKVRYEREMKTY 78
>gi|426232480|ref|XP_004010250.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP SV V K G+ W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSVGDVAKKLGQMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+P KP+ S++ F++ RE+ KK HP + + + K E+WK+MS +K + A
Sbjct: 5 EPKKPRGKMSSYAFFVQTCREERKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|224072172|ref|XP_002303636.1| high mobility group family [Populus trichocarpa]
gi|222841068|gb|EEE78615.1| high mobility group family [Populus trichocarpa]
Length = 480
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K K KDP KPK+P SAFF+F E R +NKSV V K GE+WK+M+E +
Sbjct: 262 KKTKKEKDPLKPKQPLSAFFLFCNERRAAL---LAENKSVLEVAKIAGEEWKNMTEKRRG 318
Query: 87 PYVAKAEKRKVEYEKDMKNYNRRQPEE 113
PY A+K + +Y ++M+ Y + + EE
Sbjct: 319 PYEEVAKKNREKYMQEMEAYKQTKDEE 345
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+PAS+F +F +E R+ + P N ++ A+ KWK ++E ++ + +K
Sbjct: 394 DPNKPKKPASSFLLFSKETRKSLMDERPGINNSTLTAMISV---KWKELNEEERQIWNSK 450
Query: 92 AEKRKVEYEKDMKNYNR 108
A + Y+K+++ Y++
Sbjct: 451 AAEAMEAYKKELEEYSK 467
>gi|270014157|gb|EFA10605.1| hypothetical protein TcasGA2_TC012866 [Tribolium castaneum]
Length = 840
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 6/91 (6%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
+V++KP + K K +KD NKPKRP++AF +++ E R++ K D+P K + + K GGE
Sbjct: 662 TVSEKPRQ---KRAKKSKDENKPKRPSTAFMLWLNEMRDKIKADNPGIK-ITEIAKKGGE 717
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
WK + DK+ + KA K K EY K MK Y
Sbjct: 718 MWKELK--DKSEWEGKAAKAKEEYNKAMKEY 746
>gi|51858856|gb|AAH81424.1| Hmgb3b protein [Danio rerio]
Length = 166
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G+K K KDPN P+RP S FF+F E R K +P + + V K G W ++S+++
Sbjct: 81 GKKGRKQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNP-SLGIGDVAKKLGGMWNNLSDSE 139
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQ 110
K P+++ A+K K +Y+KDM Y +++
Sbjct: 140 KQPFLSNADKLKDKYQKDMAFYKKKK 165
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYV 89
A DP KPK SA+ F++ RE++ K +P + + K E+WK+MS +K +
Sbjct: 2 AKGDPGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFE 61
Query: 90 AKAEKRKVEYEKDMKNYN 107
A++ K Y+++M +YN
Sbjct: 62 DLAKQDKARYDQEMMHYN 79
>gi|403300479|ref|XP_003940964.1| PREDICTED: high mobility group protein B1-like [Saimiri boliviensis
boliviensis]
Length = 215
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F E+R + K +HP S+ V K G+ W + + DK PY
Sbjct: 87 KKLKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGKMWNNTAANDKQPYE 145
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S+ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSCAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KVDKACYEREMKTY 78
>gi|344248925|gb|EGW05029.1| hypothetical protein I79_015964 [Cricetulus griseus]
Length = 164
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N PA + K KDPN PKRP SAF +F E+R + K +HP S+ V K GE W
Sbjct: 25 NLHPAPPKGEPKKKFKDPNAPKRPPSAF-LFCSEYRPKTKGEHP-GLSLGDVAKKLGEMW 82
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
+ + DK PY KA K K +YEKD+ Y
Sbjct: 83 NNTAAGDKQPYEKKAAKLKEQYEKDIAAY 111
>gi|28279681|gb|AAH45917.1| High-mobility group box 1 [Danio rerio]
gi|182891806|gb|AAI65307.1| Hmgb1 protein [Danio rerio]
Length = 205
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F EFR + K++ P S+ V K GE W +S +K PY KA
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKEETP-GLSIGDVAKRLGEMWNKISSEEKQPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDIAAY 161
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP+ + + K E+WK+MS +K +
Sbjct: 2 GKDPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ K YE++MKNY
Sbjct: 62 MAKLDKARYEREMKNY 77
>gi|42476233|ref|NP_955849.2| high mobility group protein B1 [Danio rerio]
gi|37681827|gb|AAQ97791.1| high-mobility group box 1 [Danio rerio]
gi|45595607|gb|AAH67193.1| High-mobility group box 1 [Danio rerio]
Length = 205
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F EFR + K++ P S+ V K GE W +S +K PY KA
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKEETP-GLSIGDVAKRLGEMWNKISSEEKQPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDIAAY 161
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP+ + + K E+WK+MS +K +
Sbjct: 2 GKDPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ K YE++MKNY
Sbjct: 62 MAKLDKARYEREMKNY 77
>gi|195627962|gb|ACG35811.1| HMG1/2-like protein [Zea mays]
Length = 123
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 58/98 (59%), Gaps = 7/98 (7%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVA------KA 92
KR + FF F+ EFR QY + HP+ K V V KA GEKW+SMS+ +KA Y + KA
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGSSKKQDGKA 79
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDD 130
K++ K K + R+ +E E S KS SEV D++ D
Sbjct: 80 SKKENTSSKKAK-ADIREGDEAEGSNKSKSEVEDDEQD 116
>gi|74138677|dbj|BAE27155.1| unnamed protein product [Mus musculus]
Length = 215
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGKHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|336272321|ref|XP_003350917.1| hypothetical protein SMAC_04223 [Sordaria macrospora k-hell]
gi|380090684|emb|CCC04854.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 103
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P + VGK GE+WK++S+ +APY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVTFGQVGKILGERWKALSDKQRAPYE 76
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEE 114
AKA K YE + + YN EEE
Sbjct: 77 AKAAADKKRYEDEKQAYNAEADEEE 101
>gi|121705796|ref|XP_001271161.1| nucleosome binding protein (Nhp6a), putative [Aspergillus clavatus
NRRL 1]
gi|119399307|gb|EAW09735.1| nucleosome binding protein (Nhp6a), putative [Aspergillus clavatus
NRRL 1]
Length = 104
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F + R++ ++++P S VGK GE+WK++S++++ PY KA
Sbjct: 20 KDPNAPKRGLSAYMFFANDNRDKVREENP-GISFGQVGKMLGERWKALSDSERRPYEEKA 78
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEES 117
K YE + +YN Q E+EEES
Sbjct: 79 ATDKKRYEDEKASYNAAQEEDEEES 103
>gi|171680363|ref|XP_001905127.1| hypothetical protein [Podospora anserina S mat+]
gi|170939808|emb|CAP65034.1| unnamed protein product [Podospora anserina S mat+]
Length = 98
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K G+ KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+ +A
Sbjct: 15 KRGRGKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSDKQRA 73
Query: 87 PYVAKAEKRKVEYEKDMKNYN 107
PY AKA K YE + + YN
Sbjct: 74 PYEAKAAADKKRYEDEKQAYN 94
>gi|162460188|ref|NP_001105108.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|4995921|emb|CAB44297.1| HMG1 protein [Zea mays]
Length = 123
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 58/98 (59%), Gaps = 7/98 (7%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVA------KA 92
KR + FF F+ EFR QY + HP+ K V V KA GEKW+SMS+ +KA Y + KA
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGSSKKQDGKA 79
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDD 130
K++ K K + R+ +E E S KS SEV D++ D
Sbjct: 80 SKKENTSSKKAK-ADVREGDEAEGSNKSKSEVEDDEQD 116
>gi|426244704|ref|XP_004016160.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 203
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K G+ W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGQMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|414585862|tpg|DAA36433.1| TPA: HMG1 protein [Zea mays]
Length = 123
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV------AKA 92
KR + FF F+ EFR QY + HP+ K V V KA GEKW+SMS+ +KA Y KA
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGGSKKQDGKA 79
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDD 130
K++ K K + R+ +E E S KS SEV D++ D
Sbjct: 80 SKKENTSSKKAK-ADVREGDEAEGSNKSKSEVEDDEQD 116
>gi|255537735|ref|XP_002509934.1| transcription factor, putative [Ricinus communis]
gi|223549833|gb|EEF51321.1| transcription factor, putative [Ricinus communis]
Length = 514
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK+P SAFF+F E R + NK+V V K GE+WK+M+E K PY A+
Sbjct: 307 DPLKPKQPMSAFFLFSNERRASLLAE---NKNVREVAKIAGEQWKNMTEEQKGPYEEMAK 363
Query: 94 KRKVEYEKDMKNYNRRQPEE 113
+ K+ Y ++M+ Y +++ EE
Sbjct: 364 RNKLRYMQEMEAYKQKKDEE 383
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+PAS+F +F +E R+ ++ P N ++ A+ KWK +SE ++ + AK
Sbjct: 432 DPNKPKKPASSFLIFSKEARKNLAQERPVINNSTLNALISV---KWKELSEEERQIWNAK 488
Query: 92 AEKRKVEYEKDMKNYNR 108
A + Y+K+M+ YN+
Sbjct: 489 AAEAMEIYKKEMEEYNK 505
>gi|15236607|ref|NP_194111.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266376|sp|Q9SUP7.1|HMGB6_ARATH RecName: Full=High mobility group B protein 6; AltName:
Full=Nucleosome/chromatin assembly factor group D 06;
Short=Nucleosome/chromatin assembly factor group D 6;
AltName: Full=WRKY transcription factor 53;
Short=AtWRKY53; Short=WRKY DNA-binding protein 53
gi|4454049|emb|CAA23046.1| 98b like protein [Arabidopsis thaliana]
gi|7269229|emb|CAB81298.1| 98b like protein [Arabidopsis thaliana]
gi|18377799|gb|AAL67049.1| putative 98b protein [Arabidopsis thaliana]
gi|20465867|gb|AAM20038.1| putative 98b protein [Arabidopsis thaliana]
gi|22022506|gb|AAM83212.1| putative 98b protein [Arabidopsis thaliana]
gi|332659407|gb|AEE84807.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 456
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SAF V+ E R +++ NKSV V K GE+WK++S+ KAPY A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREE---NKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 94 KRKVEYEKDMKNYNRRQPEE 113
K K Y + M+ Y R + EE
Sbjct: 308 KNKETYLQAMEEYKRTKEEE 327
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPK+PAS++F+F ++ R++ ++ P + A V KWK +SE +K Y KA
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNN-ATVTALISLKWKELSEEEKQVYNGKAA 433
Query: 94 KRKVEYEKDMKNYNRR 109
K Y+K+++ YN++
Sbjct: 434 KLMEAYKKEVEAYNKK 449
>gi|384246550|gb|EIE20040.1| hypothetical protein COCSUDRAFT_83556 [Coccomyxa subellipsoidea
C-169]
Length = 140
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A K + P+RP SA+ FM EFRE++K DHP+ V+ VG A GE W+S++ KA Y
Sbjct: 12 RAKKPKDAPRRPKSAYMFFMAEFREKWKVDHPEVNRVSDVGVAAGEAWRSLTPEQKAVYE 71
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEEEESEKS 120
++ K Y ++ Y P+ ++ ++S
Sbjct: 72 EQSVGSKATYAAEIAEYASAHPKPPKKRQRS 102
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVA 67
S + KP K ++S ++P + +RP SA+F F+ FR+ +K+D+P A
Sbjct: 90 SAHPKPPKKRQRS----REPGQLRRPTSAYFFFLNTFRDAFKEDNPGTGPCA 137
>gi|426236473|ref|XP_004012193.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K G+ W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGQMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|327260386|ref|XP_003215015.1| PREDICTED: FACT complex subunit SSRP1-like [Anolis carolinensis]
Length = 705
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 19 KKPAKAGRKS-GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+KP K R+S GK KDPN PKRP SA+ +++ R++ + + P SV V K GE W
Sbjct: 527 RKPRK--RQSEGKKGKDPNAPKRPLSAYMLWLNANRDKIRSESP-GMSVTDVSKKAGELW 583
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
K+MS+ K + KAE K +YEK MK YN
Sbjct: 584 KAMSKEKKEEWDRKAEDAKRDYEKAMKEYN 613
>gi|62638360|ref|XP_574279.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|109460525|ref|XP_001074365.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
Length = 209
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K EYEKD+ Y
Sbjct: 152 KEEYEKDIAAY 162
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++K HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|393219482|gb|EJD04969.1| HMG-box [Fomitiporia mediterranea MF3/22]
Length = 114
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 10 TRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
TR A KPA+ GK KDPN PKR SA+ F +++RE+ K ++P + V
Sbjct: 10 TRKAAAGAADKPAR-----GKGKKDPNAPKRALSAYMFFSQDWRERVKAENP-DAGFGEV 63
Query: 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
GK G KWK M E++K PY+ +A + K E++ NY ++
Sbjct: 64 GKLLGAKWKEMDESEKRPYIEQAARDKARAEEEKANYEKK 103
>gi|82952271|ref|XP_889413.1| PREDICTED: high mobility group protein B1-like isoform 2 [Mus
musculus]
gi|407263905|ref|XP_003945567.1| PREDICTED: high mobility group protein B1-like isoform 1 [Mus
musculus]
Length = 215
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
R++ K KDPN PKRP SAFF+F +R + K +HP S+ V K GE W + + DK
Sbjct: 83 RETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHP-GLSIGDVAKKRGEMWNNTAADDK 141
Query: 86 APYVAKAEKRKVEYEKDMKNY 106
PY KA K K +YEKD+ Y
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAY 162
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
K YE++MK Y
Sbjct: 65 IADKARYEREMKTY 78
>gi|334186863|ref|NP_001190816.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|332659408|gb|AEE84808.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 450
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SAF V+ E R +++ NKSV V K GE+WK++S+ KAPY A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREE---NKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 94 KRKVEYEKDMKNYNRRQPEE 113
K K Y + M+ Y R + EE
Sbjct: 308 KNKETYLQAMEEYKRTKEEE 327
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPK+PAS++F+F ++ R++ ++ P + A V KWK +SE +K Y KA
Sbjct: 369 DPNKPKKPASSYFLFSKDERKKLTEERPGTNN-ATVTALISLKWKELSEEEKQVYNGKAA 427
Query: 94 KRKVEYEKDMKNYNRR 109
K Y+K+++ YN++
Sbjct: 428 KLMEAYKKEVEAYNKK 443
>gi|300677968|gb|ADK27291.1| high-mobility-group B1b [Gekko japonicus]
Length = 215
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|351707228|gb|EHB10147.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 709
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK M + K +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMPKEKKEEWD 597
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE + EYEK MK Y
Sbjct: 598 HKAEDARREYEKAMKEY 614
>gi|62955511|ref|NP_001017769.1| high mobility group protein B3 [Danio rerio]
gi|62202670|gb|AAH93186.1| High-mobility group box 3b [Danio rerio]
gi|182890656|gb|AAI64996.1| Hmgb3b protein [Danio rerio]
Length = 198
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G+K K KDPN P+RP S FF+F E R K +P + + V K G W ++S+++
Sbjct: 81 GKKGRKQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNP-SLGIGDVAKKLGGMWNNLSDSE 139
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K P+++ A+K K +Y+KDM Y
Sbjct: 140 KQPFLSNADKLKDKYQKDMAFY 161
Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYV 89
A DP KPK SA+ F++ RE++ K +P + + K E+WK+MS +K +
Sbjct: 2 AKGDPGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFE 61
Query: 90 AKAEKRKVEYEKDMKNYN 107
A++ K Y+++M +YN
Sbjct: 62 DLAKQDKARYDQEMMHYN 79
>gi|334348387|ref|XP_003342057.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Monodelphis domestica]
Length = 208
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K G KD N PK P S FF+F EFR + K +P S+ V K GE W ++S+ +K
Sbjct: 82 KGGVGGKDSNAPKHPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQ 140
Query: 87 PYVAKAEKRKVEYEKDM 103
PY KA K K +YEKD+
Sbjct: 141 PYNNKAAKLKEKYEKDV 157
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ ++ RE++KK +P+ + A K E+WK+MS +K+ + A+ K+ Y++
Sbjct: 14 SAYAFLVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKLRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>gi|221485710|gb|EEE23991.1| high mobility group protein, putative [Toxoplasma gondii GT1]
gi|221502922|gb|EEE28632.1| high mobility group protein, putative [Toxoplasma gondii VEG]
Length = 651
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPY 88
+A KDPN PK+P S++ F ++ R + K P KS + VGK GE+W +S + K Y
Sbjct: 570 RAKKDPNAPKKPLSSYMFFAKDKRAEILKKQPSLKSDIGKVGKMIGEEWAKLSSSQKMTY 629
Query: 89 VAKAEKRKVEYEKDMKNYNRRQ 110
KAE+ K+ Y+++M YN+++
Sbjct: 630 QKKAEQEKIRYQREMSLYNKKK 651
>gi|237842875|ref|XP_002370735.1| high mobility group protein, putative [Toxoplasma gondii ME49]
gi|211968399|gb|EEB03595.1| high mobility group protein, putative [Toxoplasma gondii ME49]
Length = 644
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPY 88
+A KDPN PK+P S++ F ++ R + K P KS + VGK GE+W +S + K Y
Sbjct: 563 RAKKDPNAPKKPLSSYMFFAKDKRAEILKKQPTLKSDIGKVGKMIGEEWAKLSSSQKMTY 622
Query: 89 VAKAEKRKVEYEKDMKNYNRRQ 110
KAE+ K+ Y+++M YN+++
Sbjct: 623 QKKAEQEKIRYQREMSLYNKKK 644
>gi|441639466|ref|XP_004090212.1| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 131
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN P+RP S FF+F EF + K +P S+ V K GE W ++++++K PYV K
Sbjct: 27 DPNAPQRPLSGFFLFCSEFCPEIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYVTKVA 85
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 86 KLK-KYEKDVADY 97
>gi|366988547|ref|XP_003674040.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS 4309]
gi|342299903|emb|CCC67659.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS 4309]
Length = 101
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P +A R++ + KDPN PKR SA+ F E R+ K ++P N + VGK GEKWK++
Sbjct: 3 PKEAKRRTQRRKKDPNAPKRGLSAYMFFANENRDIVKAENP-NITFGQVGKVLGEKWKAL 61
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEESE 118
+ +K PY AKA+ K YE + + Y Q ++E E
Sbjct: 62 TAEEKEPYEAKAKADKKRYESEKELYMATQVHADDEEE 99
>gi|315051466|ref|XP_003175107.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS 118893]
gi|311340422|gb|EFQ99624.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS 118893]
Length = 102
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K KS TR K V KK KDPN PKR SA+ +F E R ++++P +
Sbjct: 3 KEKSTTRKTKRGVEKK-----------KKDPNAPKRGLSAYMIFANEQRASVREENP-SI 50
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEE 114
+ VGK GE+WK++++ + PY KA K YE + YN R EEE
Sbjct: 51 TFGQVGKVLGERWKALTDKQRKPYEEKAATDKQRYEDEKAAYNSRLEEEE 100
>gi|54020668|ref|NP_112383.1| FACT complex subunit SSRP1 [Rattus norvegicus]
gi|83305804|sp|Q04931.2|SSRP1_RAT RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53734496|gb|AAH83588.1| Structure specific recognition protein 1 [Rattus norvegicus]
gi|149022436|gb|EDL79330.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
gi|149022437|gb|EDL79331.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 709
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601
Query: 94 KRKVEYEKDMKNY 106
+ EYEK MK Y
Sbjct: 602 DARREYEKAMKEY 614
>gi|186701221|gb|ACC91248.1| high mobility group HMG1/2 family protein [Arabidopsis halleri]
Length = 456
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SAF V+ E R ++D +KSV V K GE+WK++S+ KAPY A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALRED---SKSVVEVAKITGEEWKNLSDKKKAPYEEVAK 307
Query: 94 KRKVEYEKDMKNYNRRQPEE 113
K K Y + M+ Y R + EE
Sbjct: 308 KNKETYLQAMEEYKRTKEEE 327
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+PAS++F+F ++ R++ ++ P N +V A+ KWK + E +K Y K
Sbjct: 375 DPNKPKKPASSYFLFSKDERKRLIEERPGTNNSTVTALISV---KWKELGEEEKQVYNKK 431
Query: 92 AEKRKVEYEKDMKNYNRR 109
A K Y+K+++ YN++
Sbjct: 432 AAKLMEAYKKEVEAYNKK 449
>gi|444518140|gb|ELV11977.1| High mobility group protein B3 [Tupaia chinensis]
Length = 198
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G + + KDPN PKR S FF+F EFR + K +P S+ V K G+ W ++
Sbjct: 80 PAKGGEE--EKGKDPNAPKRRPSVFFLFCSEFRLKIKSTNP-GISIGDVAKKLGDVWNNL 136
Query: 81 SEADKAPYVAKAEKRKVEYEKDM 103
S+++K PY+ KA K K +YEKD+
Sbjct: 137 SDSEKQPYITKAAKLK-KYEKDV 158
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK++S +K A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKRSERWKTVSGKEKWKLDEMAKADKVRYDR 73
Query: 102 DMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSGEVFFWGCFDF 145
+MK+Y + EEE+ + + + + VFF C +F
Sbjct: 74 EMKDYGPAKGGEEEKGK--------DPNAPKRRPSVFFLFCSEF 109
>gi|444729656|gb|ELW70065.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E+ + K++HP + S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNVPKRPPLAFFLFCSEYHPKIKEEHP-DLSIGDVAKKLGEMWNNTAADDKQPY-EKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDIAAY 161
>gi|389611269|dbj|BAM19246.1| high mobility group protein D [Papilio polytes]
Length = 120
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+KPKRP SA+ +++ REQ K D+P K V + K GGE W+SM DK+ + AKA K
Sbjct: 3 DKPKRPMSAYMLWLNSAREQIKADNPGLK-VTEIAKKGGEIWRSME--DKSVWEAKAAKA 59
Query: 96 KVEYEKDMKNYN 107
K +Y KD+++YN
Sbjct: 60 KEQYTKDLESYN 71
>gi|302309760|ref|XP_002999554.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049084|emb|CAR57991.1| unnamed protein product [Candida glabrata]
Length = 93
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK+ + KDPN PKR SA+ F E R+ + ++P + + +G+ GE+WK+++ DK
Sbjct: 9 RKTTRRKKDPNAPKRALSAYMFFANENRDIVRSENP-DVTFGQIGRLLGERWKALTAEDK 67
Query: 86 APYVAKAEKRKVEYEKDMKNYN 107
PY AKAE K YE + + YN
Sbjct: 68 QPYEAKAEADKKRYESEKELYN 89
>gi|226372550|gb|ACO51900.1| High mobility group protein B2 [Rana catesbeiana]
Length = 212
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R Q K D P S+ K GE W + DK P+ KA
Sbjct: 92 DPNAPKRPPSAFFLFCSENRPQIKNDTP-GLSIGDTAKKLGELWSEQTPKDKQPFEQKAA 150
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 151 KLKEKYEKDVAAY 163
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + S A K E+WK+MS K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVSFAEFSKKCSERWKTMSAKGKGKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KGDKVRYEREMKTY 78
>gi|147903143|ref|NP_001079387.1| high mobility group box 2 [Xenopus laevis]
gi|80479234|gb|AAI08500.1| MGC52825 protein [Xenopus laevis]
Length = 211
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R Q K + P S+ K GE+W + DK P+ KA
Sbjct: 92 DPNAPKRPPSAFFLFCSEQRPQIKSETP-GLSIGDTAKKLGERWSEQTSKDKLPFEQKAA 150
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 151 KLKEKYEKDVAAY 163
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KGDKVRYEREMKTY 78
>gi|27370889|gb|AAH41262.1| MGC52825 protein [Xenopus laevis]
Length = 212
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R Q K + P S+ K GE+W + DK P+ KA
Sbjct: 92 DPNAPKRPPSAFFLFCSEQRPQIKSETP-GLSIGDTAKKLGERWSEQTSKDKLPFEQKAA 150
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 151 KLKEKYEKDVAAY 163
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE++MK Y
Sbjct: 65 KGDKVRYEREMKTY 78
>gi|67484144|ref|XP_657292.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474548|gb|EAL51913.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
Length = 114
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN+PKRP + +F+++ E R K++HP + + K E+WK++ E +K Y KA+
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHP-DIRFTEISKVASEQWKALGEEEKKEYQTKADA 84
Query: 95 RKVEYEKDMKNYNRRQ 110
K +Y+KDM+ YN ++
Sbjct: 85 AKEQYKKDMEKYNNKK 100
>gi|395847762|ref|XP_003796535.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 255
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G G KDPN P RP S F +F EF + K +P S+ V K E W ++S ++
Sbjct: 103 GLAKGGKKKDPNAPTRPPSGFCLFCSEFHPKIKSTNP-GISIGDVAKKLSEMWSNLSGSE 161
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K PY+ KA + + +YEKD+ +Y
Sbjct: 162 KQPYITKAAQLREKYEKDVADY 183
>gi|322517988|gb|ADX06860.1| high mobility group protein B1 [Sciaenops ocellatus]
Length = 206
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PA+ G+K K KDPN PKRP SAFF+F EFR + K + P ++ V K GE W
Sbjct: 79 PARGGKK--KKYKDPNAPKRPPSAFFIFCSEFRPKVKGEAP-GLTIGEVAKRLGEMWNGT 135
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
+ DK P+ KA K K +YEK++ Y ++
Sbjct: 136 ASEDKQPFEKKAAKLKEKYEKEVAAYRQK 164
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
K+ KP+ S++ F++ RE++KK HP + + A K +WK+MS +K +
Sbjct: 2 VKEQGKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSGRWKTMSSKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A + K YE++M +Y
Sbjct: 62 LARQDKARYEREMMSY 77
>gi|429860623|gb|ELA35353.1| nucleosome binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 103
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E RE ++++P S VGK GE+WK++++ +APY AKA
Sbjct: 21 KDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKILGERWKALNDKQRAPYEAKA 79
Query: 93 EKRKVEYEKDMKNYNRRQPEEE 114
K YE + + YN Q E+E
Sbjct: 80 AADKKRYEDEKQAYNADQEEDE 101
>gi|156369656|ref|XP_001628091.1| predicted protein [Nematostella vectensis]
gi|156215058|gb|EDO36028.1| predicted protein [Nematostella vectensis]
Length = 180
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKR SA+F F+ R+ KKD+P N S A+ K GE W M++ DK Y A+
Sbjct: 89 DPNKPKRCLSAYFHFINLKRDDVKKDNP-NASGGALSKVLGEMWSKMTDDDKTQYQDMAK 147
Query: 94 KRKVEYEKDMKNY 106
K KV YE +MK +
Sbjct: 148 KDKVRYESEMKAF 160
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
NKPK SA+ F+++ RE+ +++ K S+A K EKWK+MSE +K +V KA K
Sbjct: 1 NKPKGAKSAYNFFLQDQREKLQREEGKF-SLADFSKVSAEKWKNMSEEEKETFVQKAGKD 59
Query: 96 KVEYEKDMKNYN 107
K ++++M++Y
Sbjct: 60 KERFKEEMQSYT 71
>gi|331220978|ref|XP_003323164.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309302154|gb|EFP78745.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 106
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
M + S R KL + P K R K KDPN PKRP SA+ F +++RE+ K ++
Sbjct: 1 MPKDPTASSKRAPKLDCDGNPVKTKR--VKKEKDPNAPKRPLSAYMYFSQDWRERIKTEN 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
P + S +G+ G KWK +SE +K PY A + K +E + Y R
Sbjct: 59 P-DVSFGEIGRLLGLKWKGLSEEEKKPYEDMASRDKKRHEAEKAEYER 105
>gi|225704132|gb|ACO07912.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K +HP S+ K G W S + +K PY KA
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNSSAAEEKKPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K +Y+KD+ +Y
Sbjct: 148 ATLKEKYDKDIASY 161
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ R ++KK HP+ + + A K E+WK MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A++ KV YE +MKNY
Sbjct: 63 AKQDKVRYEGEMKNY 77
>gi|392877702|gb|AFM87683.1| high mobility group box 3 [Callorhinchus milii]
Length = 203
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K K KDPN PKRP S FF+F + R + K P ++ V K GE W ++ +K
Sbjct: 82 KGSKKKKDPNAPKRPPSGFFLFCSDHRPKIKAGSP-GLTIGDVAKKLGELWNGCTDEEKK 140
Query: 87 PYVAKAEKRKVEYEKDMKNY 106
PY AKA K K +YEKD+ +Y
Sbjct: 141 PYNAKAAKLKEKYEKDVADY 160
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYV 89
A +DP KP+ S++ F++ RE++KK +P + + K E+WK+MS +K+ +
Sbjct: 2 AKRDPKKPRGKMSSYAYFVQTCREEHKKKNPDVPVNFSDFSKRCSERWKTMSGKEKSKFE 61
Query: 90 AKAEKRKVEYEKDMKNY 106
A+ KV Y+++MK Y
Sbjct: 62 DLAKVDKVRYDREMKTY 78
>gi|403217000|emb|CCK71495.1| hypothetical protein KNAG_0H00800 [Kazachstania naganishii CBS
8797]
Length = 118
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R+ K ++P N + +GK GEKWK+MS DK PY AKA
Sbjct: 40 KDPNAPKRSMSAYMFFANENRDIVKSENP-NATFGQLGKLLGEKWKNMSTEDKEPYDAKA 98
Query: 93 EKRKVEYEKDMKNYN 107
K YE + + YN
Sbjct: 99 AADKKRYESEKELYN 113
>gi|401412468|ref|XP_003885681.1| High mobility group protein 1, related [Neospora caninum Liverpool]
gi|325120101|emb|CBZ55655.1| High mobility group protein 1, related [Neospora caninum Liverpool]
Length = 98
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGE 75
V KK A+ +K + KDPN PK+P S++ F ++ R + K P KS + VGK GE
Sbjct: 6 VTKKGAEGKKK--RVKKDPNAPKKPLSSYMFFAKDKRAEILKKQPSLKSDIGKVGKMIGE 63
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
+W +S + K Y KAE+ K+ Y+++M YN+++
Sbjct: 64 EWAKLSSSQKLTYQKKAEQEKIRYQREMSLYNKKK 98
>gi|355784552|gb|EHH65403.1| hypothetical protein EGM_02155, partial [Macaca fascicularis]
Length = 116
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 12/86 (13%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ + DPN PKRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 18 PAKGGKNN-----DPNAPKRPLSGFFLFCSEFHPKMKSTNP-GISIGDVAKKLGEMWNNL 71
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PY+ K +YEKD+ +Y
Sbjct: 72 NDSEKQPYITK------KYEKDVADY 91
>gi|225703866|gb|ACO07779.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K +HP S+ K G W S + +K PY KA
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNSSAAEEKKPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K +Y+KD+ +Y
Sbjct: 148 ATLKEKYDKDIASY 161
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ R ++KK HP+ + + A K E+WK MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|221221922|gb|ACM09622.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K +HP S+ K G W S + +K PY KA
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNSSAAEEKKPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K +Y+KD+ +Y
Sbjct: 148 ATLKEKYDKDIASY 161
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ R ++KK HP+ + + A K E+WK MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|221219434|gb|ACM08378.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K +HP S+ K G W S + +K PY KA
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNSSAAEEKKPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K +Y+KD+ +Y
Sbjct: 148 ATLKEKYDKDIASY 161
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ R ++KK HP+ + + A K E+WK MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|397502952|ref|XP_003822100.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
gi|410056873|ref|XP_003317692.2| PREDICTED: high mobility group protein B3-like [Pan troglodytes]
Length = 221
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + G+K KDPN KRP S FF+F EF + K +P S+ + K GE W +
Sbjct: 100 PVEGGKK-----KDPNALKRPLSGFFLFCSEFHPKIKSTNP-GISIGDMAKKLGEMWINY 153
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ +K PY+ KA K +YEKD+ +Y
Sbjct: 154 SDREKQPYITKAADLKEKYEKDVADY 179
>gi|167396118|ref|XP_001741910.1| non-histone chromosomal protein [Entamoeba dispar SAW760]
gi|165893321|gb|EDR21615.1| non-histone chromosomal protein, putative [Entamoeba dispar SAW760]
Length = 111
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN+PK+P SA+F+++ E R K++HP K + K E+WK++ E +K Y AKA+
Sbjct: 23 PNRPKKPQSAYFLYLNEHRASIKEEHPDIK-FTEISKVASEQWKALGEEEKKEYQAKADA 81
Query: 95 RKVEYEKDMKNYN 107
+ +Y+KDM+ Y
Sbjct: 82 AREQYKKDMEKYT 94
>gi|387914026|gb|AFK10622.1| high mobility group box 3 [Callorhinchus milii]
Length = 210
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K K KDPN PKRP S FF+F + R + K P ++ V K GE W ++ +K
Sbjct: 89 KGSKKKKDPNAPKRPPSGFFLFCSDHRPKIKAGSP-GLTIGDVAKKLGELWNGCTDEEKK 147
Query: 87 PYVAKAEKRKVEYEKDMKNY 106
PY AKA K K +YEKD+ +Y
Sbjct: 148 PYNAKAAKLKEKYEKDVADY 167
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYV 89
A +DP KP+ S++ F++ RE++KK +P + + K E+WK+MS +K+ +
Sbjct: 9 AKRDPKKPRGKMSSYAYFVQTCREEHKKKNPDVPVNFSDFSKRCSERWKTMSGKEKSKFE 68
Query: 90 AKAEKRKVEYEKDMKNY 106
A+ KV Y+++MK Y
Sbjct: 69 DLAKVDKVRYDREMKTY 85
>gi|380792505|gb|AFE68128.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 183
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEK++ Y
Sbjct: 149 AKLKEKYEKEIAAY 162
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|356510782|ref|XP_003524113.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 165
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 25 GRKSGKAAK--DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
RK KA + D K K+P S FF F+E+FR++++ +P KS +GKA +KWK+M+
Sbjct: 52 SRKKLKAKQKFDAMKQKKPLSGFFYFLEDFRKEFQVRNPDVKSKRDIGKASAKKWKTMTY 111
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDE 131
+KA Y A K+ E++ M +N++ S + DE D+E
Sbjct: 112 EEKAQYFDIATKKHDEFDSAMAEFNKKMISNLSFLLASELTLVDETDEE 160
>gi|241952671|ref|XP_002419057.1| HMG-like DNA binding protein, putative; high mobility group
protein, putative; non-histone DNA-binding protein,
putative [Candida dubliniensis CD36]
gi|223642397|emb|CAX42640.1| HMG-like DNA binding protein, putative [Candida dubliniensis CD36]
Length = 312
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
A+DP+ PKRP +A+ +F E +E+ K+D P + + + K+ E WKS+SE + PY
Sbjct: 142 ARDPDLPKRPTNAYLIFCEMEKERIKQDDP---NASDLSKSMTEAWKSLSEERRRPYYKL 198
Query: 92 AEKRKVEYEKDMKNYNRR 109
E ++ Y+++M YN++
Sbjct: 199 YEDDRIRYQREMAEYNQK 216
>gi|390463605|ref|XP_003733066.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YE D+ Y
Sbjct: 149 AKLKEKYEMDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444730527|gb|ELW70909.1| High mobility group protein B1 [Tupaia chinensis]
Length = 238
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E+R + + +HP S+ K GE W + + DK PY +A
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIEGEHP-GLSIGDTAKKLGELWNNTAANDKQPYEKEA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ E++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCWEEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KVDKTRYEREMKTY 78
>gi|297706944|ref|XP_002830283.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pongo abelii]
Length = 125
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ PN PKRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 18 PAKGGKNH------PNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVVKKLGEMWNNL 70
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PYV K K K +YEKD+ +Y
Sbjct: 71 NDSEKQPYVTKVAKLK-KYEKDVADY 95
>gi|444510285|gb|ELV09567.1| High mobility group protein B3 [Tupaia chinensis]
Length = 197
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 77 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAA 135
Query: 94 KRK 96
K K
Sbjct: 136 KLK 138
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 2 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 61
Query: 102 DMKNY 106
+MK+Y
Sbjct: 62 EMKDY 66
>gi|156837652|ref|XP_001642846.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156113421|gb|EDO14988.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P ++ +++ + KDPN PKR SA+ F E R+ + ++P + S VG+ GEKWK++
Sbjct: 4 PRESKKRTTRRKKDPNAPKRALSAYMFFANETRDIVRAENP-DVSFGQVGRILGEKWKAL 62
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYN 107
+ DK P+ AKAE K YE + + YN
Sbjct: 63 TPEDKVPFEAKAEADKKRYESEKELYN 89
>gi|432895946|ref|XP_004076239.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 206
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK + K KDPN PKRP SAFF+F EFR + K + P ++ V K GE W S
Sbjct: 79 PAKGAKT--KKFKDPNAPKRPPSAFFIFCSEFRPKVKGESP-GLTIGDVAKRLGEMWNST 135
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S DK PY KA K K +Y KD+ Y
Sbjct: 136 SAEDKQPYEKKAAKLKEKYGKDIAAY 161
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP + + A K E+WK+MS +K +
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A + KV Y+++M +Y
Sbjct: 63 ARQDKVRYDREMMSY 77
>gi|358391632|gb|EHK41036.1| hypothetical protein TRIATDRAFT_259074 [Trichoderma atroviride IMI
206040]
Length = 101
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++++ +APY
Sbjct: 17 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNDKQRAPYE 75
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEE 113
AKA K YE + + YN Q +E
Sbjct: 76 AKAAADKKRYEDEKQAYNADQEDE 99
>gi|149726074|ref|XP_001503141.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 215
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS ++ + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEEGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|40352857|gb|AAH64790.1| Hmgb1 protein [Mus musculus]
Length = 215
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|109076196|ref|XP_001085665.1| PREDICTED: high mobility group protein B2-like [Macaca mulatta]
Length = 321
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 207 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 265
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 266 KEKYEKDIAAY 276
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 119 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 178
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 179 KSDKARYDREMKNY 192
>gi|367020358|ref|XP_003659464.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila ATCC
42464]
gi|347006731|gb|AEO54219.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila ATCC
42464]
Length = 101
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 21 PAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
P A +SGKA KDPN PKR SA+ F E RE ++++P S VGK GE
Sbjct: 2 PKAAKGRSGKAEKKRSKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGE 60
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
+WK++S+ +APY AKA K YE + + YN
Sbjct: 61 RWKALSDKQRAPYEAKAAADKKRYEDEKQAYN 92
>gi|148226156|ref|NP_001084164.1| FACT complex subunit SSRP1 [Xenopus laevis]
gi|82175412|sp|Q9W602.1|SSRP1_XENLA RecName: Full=FACT complex subunit SSRP1; AltName: Full=DNA
unwinding factor 87 kDa subunit; Short=DUF87; AltName:
Full=Facilitates chromatin transcription complex subunit
ssrp1; AltName: Full=Structure-specific recognition
protein 1
gi|4586285|dbj|BAA76333.1| DUF87 [Xenopus laevis]
Length = 693
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP K + K KDP PKRP SA+ +++ RE+ K ++P S+ + K GE WK
Sbjct: 524 KKPRK--KPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWK 580
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEE 113
+MS K + +AE+ K +YEK MK YN P E
Sbjct: 581 NMSRDKKEEWDRRAEEAKRDYEKAMKEYNTSAPTE 615
>gi|444513275|gb|ELV10301.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E+R Q K +HP S+ V K GE W + + K PY KA
Sbjct: 89 KDPNAPKRPLLAFFLFCSEYRPQIKGEHP-GLSIGDVAKKLGEMWNNTAADGKQPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDIAAY 161
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
+P KP+ S+ F++ F+E++KK + + + K E+WK+MS +K + A+
Sbjct: 5 NPEKPRGKMSSNAFFVQTFQEEHKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
Query: 94 KRKVEYEKDMKNY 106
K YE++MK Y
Sbjct: 65 ADKARYEREMKTY 77
>gi|444515932|gb|ELV11007.1| High mobility group protein B3 [Tupaia chinensis]
Length = 212
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN P+RP S F +F EF + K +P S+ V K E W + S+++K PY+ KA
Sbjct: 89 DPNAPERPPSGFLLFCSEFHLKIKSTNP-GISIGDVAKKLVEMWNNFSDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ NY
Sbjct: 148 KLKEKYKKDVANY 160
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYV 89
A DP KPK S + F++ RE++KK +P+ + K ++WK+MS +K+ +
Sbjct: 2 AKSDPKKPKGKVSTYAFFVQTCREEHKKKNPEVPINFTEFSKKCSKRWKTMSGKEKSKFD 61
Query: 90 AKAEKRKVEYEKDMKNY 106
A+ K+ Y+ +MK+Y
Sbjct: 62 EMAKADKIRYDWEMKDY 78
>gi|351702997|gb|EHB05916.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 204
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR S FF+F E+R + K +HP S V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRAPSTFFLFCSEYRPKIKGEHP-GLSTGDVAKKLGEMWNNTAAGDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
+ K +YEKD+ Y
Sbjct: 149 AELKEKYEKDIAAY 162
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV--AAVGKAGGEKWKSMSEADKAPYVAK 91
DP KP+ S++ F++ RE++KK H + SV + K E+WK+MS +K +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKH-SDASVKFSEYSKKCSERWKTMSAKEKGTFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ K YE+ MK Y
Sbjct: 64 AKVDKARYERKMKTY 78
>gi|164422576|ref|XP_957906.2| hypothetical protein NCU09995 [Neurospora crassa OR74A]
gi|157069727|gb|EAA28670.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 95
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+ +APY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSDKQRAPYE 76
Query: 90 AKAEKRKVEYEKDMKNYN 107
AKA K YE + + YN
Sbjct: 77 AKAAADKKRYEDEKQAYN 94
>gi|389608535|dbj|BAM17877.1| high mobility group protein D [Papilio xuthus]
Length = 121
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+KPKRP SA+ +++ REQ K D+P + V + K GGE W+SM DK+ + AKA K
Sbjct: 3 DKPKRPMSAYMLWLNSAREQIKADNPGLR-VTEIAKKGGEIWRSME--DKSVWEAKAAKA 59
Query: 96 KVEYEKDMKNYN 107
K +Y KD+++YN
Sbjct: 60 KEQYTKDLESYN 71
>gi|295671102|ref|XP_002796098.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284231|gb|EEH39797.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 103
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E +APY AKA
Sbjct: 21 KDPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNEKQRAPYEAKA 79
Query: 93 EKRKVEYEKDMKNYNRRQPEEE 114
K YE + +YN + E+E
Sbjct: 80 AADKKRYEDEKASYNAHEDEDE 101
>gi|119623033|gb|EAX02628.1| hCG1644442 [Homo sapiens]
Length = 201
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + G+K KDPN KRP S FF+F EF + K +P S+ + K GE W +
Sbjct: 80 PVEGGKK-----KDPNALKRPLSGFFLFCSEFHPKIKSTNP-GISIGDMAKKLGEMWINY 133
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ +K PY+ KA K +YEKD+ +Y
Sbjct: 134 SDREKQPYITKAADLKEKYEKDVADY 159
>gi|444732714|gb|ELW72989.1| Enkurin [Tupaia chinensis]
Length = 362
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87
+ K +KDPN PKRP SAFF+F E+R + K +HP S+ K GE W + + +K P
Sbjct: 85 TKKKSKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDAAKKLGEMWNNTAADEKQP 143
Query: 88 YVAKAEKRKVEYEKDMKNY 106
Y KA K K +YEKD+ Y
Sbjct: 144 YEKKAAKLKEKYEKDIAAY 162
>gi|225681708|gb|EEH19992.1| nucleosome binding protein [Paracoccidioides brasiliensis Pb03]
Length = 103
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E +APY AKA
Sbjct: 21 KDPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNEKQRAPYEAKA 79
Query: 93 EKRKVEYEKDMKNYNRRQPEEE 114
K YE + +YN + E+E
Sbjct: 80 AADKKRYEDEKASYNAHEDEDE 101
>gi|444728196|gb|ELW68660.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S V K GE W + + DK PY KA
Sbjct: 105 KDPNAPKRPPSAFFLFCSEYRSKIKGEHP-GLSNGDVAKKLGEIWNNTAADDKQPYEKKA 163
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 164 AKLKEKYEKDIAAY 177
>gi|351712970|gb|EHB15889.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 677
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDP+ P++P SA+ +++ RE K +HP S+A + K GE WK MS+ K +
Sbjct: 538 KKGKDPSVPEQPLSAYVLWLNASREMIKSEHP-GISIANLSKKAGEIWKGMSKTMKEEWG 596
Query: 90 AKAEKRKVEYEKDMKNYNR 108
KAE ++EYEK +K Y R
Sbjct: 597 HKAEDVRLEYEKAVKEYER 615
>gi|302755040|ref|XP_002960944.1| hypothetical protein SELMODRAFT_73858 [Selaginella moellendorffii]
gi|300171883|gb|EFJ38483.1| hypothetical protein SELMODRAFT_73858 [Selaginella moellendorffii]
Length = 457
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDP KPKRP + + + EE R + N V +GK GE+W+SM E +APY A
Sbjct: 245 KDPEKPKRPTTGYMAYSEERRPALMNE---NLKVPQIGKILGEEWRSMDEKARAPYEKIA 301
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEESEKSMSE 123
K Y +M+ YN+++ +EE +E+++ E
Sbjct: 302 TDAKATYLTEMEAYNKKKAQEEVVAEQALKE 332
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KA RK+ +P KPK+ A+A+ +F E+R++ + + P K A + KW M
Sbjct: 359 KAPRKAKAKTAEPGKPKKAATAYILFGMEYRKKLQAEMPTAK-FAELTALVASKWNEMGA 417
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYNRRQP 111
+K PYV +A K++Y++ M+ + R P
Sbjct: 418 EEKQPYVNQAGVEKLKYQEAMEEFKRLSP 446
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP + K+P S++F++ + RE+ + +P N + + GE WKS+SE +K PY +
Sbjct: 126 DPERIKKPLSSYFLWCNDQREKVRAQNP-NAGIKELSSIFGELWKSVSEEEKKPYEEIYQ 184
Query: 94 KRKVEYEKDMKNYNRRQPE 112
K K EY K + +R+ E
Sbjct: 185 KNKEEYLKQLVGKEKREAE 203
>gi|194666188|ref|XP_875720.3| PREDICTED: high mobility group protein B2 [Bos taurus]
gi|297473608|ref|XP_002686711.1| PREDICTED: high mobility group protein B2 [Bos taurus]
gi|296488702|tpg|DAA30815.1| TPA: high-mobility group box 2-like [Bos taurus]
Length = 283
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 167 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 225
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 226 KEKYEKDIAAY 236
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 49 MEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
+ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 94 INTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 152
>gi|67475910|ref|XP_653586.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56470556|gb|EAL48200.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449703217|gb|EMD43706.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica KU27]
Length = 111
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN+PKRP + +F+++ E R K++HP K V + K E+WK++ E +K Y KA+
Sbjct: 23 PNRPKRPPTPYFLYLNEHRASIKEEHPDAK-VTEIAKIASEQWKALGEEEKKEYQTKADA 81
Query: 95 RKVEYEKDMKNYN 107
K +Y+KD++ Y+
Sbjct: 82 AKEQYKKDIEKYD 94
>gi|395753165|ref|XP_003779555.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
Length = 215
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KD N PKR SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDLNAPKRTPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 VKLKEKYEKDIAAY 162
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ +E+ KK HP + + + K E+WK++S +K +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCQEEKKKKHPDASVNFSEFSKTCSERWKTISAKEKGKFEDMV 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|449269673|gb|EMC80424.1| High mobility group protein B1 [Columba livia]
Length = 209
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W + + DK PY
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 90 AKAEKRKVEYEK 101
KA K K +YEK
Sbjct: 146 KKAAKLKEKYEK 157
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K+ YEK+MKNY
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|444323521|ref|XP_004182401.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS 6284]
gi|387515448|emb|CCH62882.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS 6284]
Length = 94
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + ++S + KDPN PKR SA+ F E R+ + ++P + + VGK GE+WK++
Sbjct: 4 PRETKKRSTRRKKDPNAPKRALSAYMFFANETRDIVRSENP-DVTFGQVGKILGERWKAL 62
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYN 107
S +K PY KAE K YE + + YN
Sbjct: 63 SAEEKVPYETKAEADKKRYESEKELYN 89
>gi|291413747|ref|XP_002723128.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 117 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 175
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 176 KEKYEKDIAAY 186
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K + A
Sbjct: 29 DPNKPRGKMSSYAFFVQMCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKPKFEDMA 88
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 89 KSDKARYDREMKNY 102
>gi|354470970|ref|XP_003497717.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
Length = 215
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDVAKKLGELWNNTAAEDKQPYGKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K ++EK + Y
Sbjct: 149 AKLKEKHEKGIAAY 162
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKRKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|291413749|ref|XP_002723129.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 219
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV--GKAGGEKWKSMSEADKAPYVAK 91
DPNKP+ S++ F++ RE++K+ HP + SV V K E+WK+MS + + +
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKRKHP-DSSVNFVEFSKKCSERWKTMSAKENSKFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ K Y+++MKNY
Sbjct: 64 AKSDKARYDREMKNY 78
>gi|145233003|ref|XP_001399874.1| non-histone chromosomal protein 6 [Aspergillus niger CBS 513.88]
gi|317026969|ref|XP_003188583.1| non-histone chromosomal protein 6 [Aspergillus niger CBS 513.88]
gi|134056796|emb|CAK37704.1| unnamed protein product [Aspergillus niger]
gi|350634700|gb|EHA23062.1| hypothetical protein ASPNIDRAFT_206990 [Aspergillus niger ATCC
1015]
Length = 103
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F + RE+ ++++P S VGK GE+WK++S+ D+ PY KA
Sbjct: 20 KDPNAPKRGLSAYMFFANDNREKVREENP-GISFGQVGKMLGERWKALSDTDRRPYEEKA 78
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEES 117
K YE + +YN E+EE S
Sbjct: 79 AADKKRYEDEKASYNAAAEEDEESS 103
>gi|444726553|gb|ELW67082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 111
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN +R SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 39 KDPNASQRSPSAFFLFSSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAAGDKQPYGKKA 97
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 98 AKLKEKYEKDIAAY 111
>gi|8393536|ref|NP_058883.1| high mobility group protein B2 [Rattus norvegicus]
gi|293340790|ref|XP_001063065.2| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|293352163|ref|XP_573272.3| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|1708260|sp|P52925.2|HMGB2_RAT RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|1304193|dbj|BAA12350.1| HMG2 [Rattus norvegicus]
gi|51259308|gb|AAH78866.1| Hmgb2 protein [Rattus norvegicus]
gi|58476482|gb|AAH89854.1| Hmgb2 protein [Rattus norvegicus]
gi|77567606|gb|AAI07456.1| Hmgb2 protein [Rattus norvegicus]
gi|149032266|gb|EDL87172.1| rCG59188 [Rattus norvegicus]
Length = 210
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|444728198|gb|ELW68662.1| High mobility group protein B1 [Tupaia chinensis]
Length = 132
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S V K GE W + + DK PY KA
Sbjct: 16 KDPNAPKRPPSAFFLFCSEYRSKIKGEHP-GLSNGDVAKKLGEIWNNTAADDKQPYEKKA 74
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 75 AKLKEKYEKDIAAY 88
>gi|156843619|ref|XP_001644876.1| hypothetical protein Kpol_1065p34 [Vanderwaltozyma polyspora DSM
70294]
gi|156115528|gb|EDO17018.1| hypothetical protein Kpol_1065p34 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ K ++P + S VG+ GEKWK+M++ DK P+ AKAE
Sbjct: 17 DPNAPKRALSAYMFFANETRDIVKAENP-DVSFGQVGRILGEKWKAMTDEDKQPFDAKAE 75
Query: 94 KRKVEYEKDMKNYN 107
K YE + + YN
Sbjct: 76 ADKKRYESEKELYN 89
>gi|344237192|gb|EGV93295.1| High mobility group protein B1 [Cricetulus griseus]
Length = 203
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK PY KA
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDVAKKLGELWNNTAAEDKQPYGKKA 136
Query: 93 EKRKVEYEKDMKNY 106
K K ++EK + Y
Sbjct: 137 AKLKEKHEKGIAAY 150
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK HP + + + K E+WK+MS +K + A+ K YE+
Sbjct: 2 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKRKFEDMAKADKARYER 61
Query: 102 DMKNY 106
+MK Y
Sbjct: 62 EMKTY 66
>gi|154284354|ref|XP_001542972.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|150406613|gb|EDN02154.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|240273630|gb|EER37150.1| nucleosome binding protein [Ajellomyces capsulatus H143]
gi|325087527|gb|EGC40837.1| nucleosome binding protein [Ajellomyces capsulatus H88]
Length = 102
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +APY AKA
Sbjct: 20 KDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKVLGERWKALNEKQRAPYEAKA 78
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEES 117
K YE + +YN Q E++E S
Sbjct: 79 AADKKRYEDEKASYN-AQDEDDESS 102
>gi|296227498|ref|XP_002759405.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 215
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K G+ W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGKMWSNTAADDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|417397133|gb|JAA45600.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 208
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + + K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFSEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|431918327|gb|ELK17554.1| High mobility group protein B2 [Pteropus alecto]
Length = 209
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|426220609|ref|XP_004004507.1| PREDICTED: high mobility group protein B2 [Ovis aries]
Length = 205
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|73993609|ref|XP_543194.2| PREDICTED: high mobility group protein B2 isoform 1 [Canis lupus
familiaris]
gi|301753755|ref|XP_002912713.1| PREDICTED: high mobility group protein B2-like [Ailuropoda
melanoleuca]
gi|410956554|ref|XP_003984907.1| PREDICTED: high mobility group protein B2 [Felis catus]
gi|281338293|gb|EFB13877.1| hypothetical protein PANDA_000462 [Ailuropoda melanoleuca]
Length = 210
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|11321591|ref|NP_002120.1| high mobility group protein B2 [Homo sapiens]
gi|83035095|ref|NP_001032705.1| high mobility group protein B2 [Bos taurus]
gi|194688133|ref|NP_001124160.1| high mobility group protein B2 [Homo sapiens]
gi|194688135|ref|NP_001124161.1| high mobility group protein B2 [Homo sapiens]
gi|332820789|ref|XP_517538.3| PREDICTED: high mobility group protein B2 isoform 2 [Pan
troglodytes]
gi|332820791|ref|XP_003310651.1| PREDICTED: high mobility group protein B2 isoform 1 [Pan
troglodytes]
gi|397505874|ref|XP_003823467.1| PREDICTED: high mobility group protein B2 isoform 1 [Pan paniscus]
gi|397505876|ref|XP_003823468.1| PREDICTED: high mobility group protein B2 isoform 2 [Pan paniscus]
gi|397505878|ref|XP_003823469.1| PREDICTED: high mobility group protein B2 isoform 3 [Pan paniscus]
gi|410038949|ref|XP_003950520.1| PREDICTED: high mobility group protein B2 [Pan troglodytes]
gi|123374|sp|P26583.2|HMGB2_HUMAN RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|109940084|sp|P40673.3|HMGB2_BOVIN RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|32333|emb|CAA44395.1| HMG-2 [Homo sapiens]
gi|184236|gb|AAA58659.1| high mobility group 2 protein [Homo sapiens]
gi|12654471|gb|AAH01063.1| High-mobility group box 2 [Homo sapiens]
gi|54696426|gb|AAV38585.1| high-mobility group box 2 [Homo sapiens]
gi|61358840|gb|AAX41628.1| high-mobility group box 2 [synthetic construct]
gi|71679685|gb|AAI00020.1| HMGB2 protein [Homo sapiens]
gi|81674324|gb|AAI09756.1| High-mobility group box 2 [Bos taurus]
gi|119625163|gb|EAX04758.1| high-mobility group box 2, isoform CRA_a [Homo sapiens]
gi|119625164|gb|EAX04759.1| high-mobility group box 2, isoform CRA_a [Homo sapiens]
gi|123982946|gb|ABM83214.1| high-mobility group box 2 [synthetic construct]
gi|123997623|gb|ABM86413.1| high-mobility group box 2 [synthetic construct]
gi|189053183|dbj|BAG34805.1| unnamed protein product [Homo sapiens]
gi|208966462|dbj|BAG73245.1| high-mobility group box 2 [synthetic construct]
gi|296484972|tpg|DAA27087.1| TPA: high mobility group protein B2 [Bos taurus]
gi|380785663|gb|AFE64707.1| high mobility group protein B2 [Macaca mulatta]
gi|383417929|gb|AFH32178.1| high mobility group protein B2 [Macaca mulatta]
gi|383417931|gb|AFH32179.1| high mobility group protein B2 [Macaca mulatta]
gi|383417933|gb|AFH32180.1| high mobility group protein B2 [Macaca mulatta]
gi|384941858|gb|AFI34534.1| high mobility group protein B2 [Macaca mulatta]
gi|384946750|gb|AFI36980.1| high mobility group protein B2 [Macaca mulatta]
gi|410212048|gb|JAA03243.1| high-mobility group box 2 [Pan troglodytes]
gi|410212050|gb|JAA03244.1| high-mobility group box 2 [Pan troglodytes]
gi|410253758|gb|JAA14846.1| high-mobility group box 2 [Pan troglodytes]
gi|410253760|gb|JAA14847.1| high-mobility group box 2 [Pan troglodytes]
gi|410304294|gb|JAA30747.1| high-mobility group box 2 [Pan troglodytes]
gi|410304296|gb|JAA30748.1| high-mobility group box 2 [Pan troglodytes]
gi|410337391|gb|JAA37642.1| high-mobility group box 2 [Pan troglodytes]
gi|410337393|gb|JAA37643.1| high-mobility group box 2 [Pan troglodytes]
gi|410337395|gb|JAA37644.1| high mobility group box 2 [Pan troglodytes]
gi|440908504|gb|ELR58513.1| High mobility group protein B2 [Bos grunniens mutus]
gi|738688|prf||2001363A high mobility group protein 2
Length = 209
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|383417927|gb|AFH32177.1| high mobility group protein B2 [Macaca mulatta]
Length = 206
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|351701092|gb|EHB04011.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 215
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 94 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 152
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 153 KEKYEKDIAAY 163
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|354468511|ref|XP_003496696.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
gi|344237248|gb|EGV93351.1| High mobility group protein B1 [Cricetulus griseus]
Length = 220
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK P+ KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPFEKKA 148
Query: 93 EKRKVEYEKDM 103
K K +YEKD+
Sbjct: 149 AKLKEKYEKDI 159
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|296195168|ref|XP_002745261.1| PREDICTED: high mobility group protein B2-like isoform 2
[Callithrix jacchus]
Length = 205
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|291385922|ref|XP_002709517.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
gi|344288245|ref|XP_003415861.1| PREDICTED: high mobility group protein B2-like [Loxodonta africana]
Length = 210
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|258563818|ref|XP_002582654.1| nonhistone chromosomal protein 6A [Uncinocarpus reesii 1704]
gi|237908161|gb|EEP82562.1| nonhistone chromosomal protein 6A [Uncinocarpus reesii 1704]
Length = 115
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKR SA+ F E RE ++++P S VGK GE+WK++S+ +APY KA
Sbjct: 22 PNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALSDKQRAPYEEKAAA 80
Query: 95 RKVEYEKDMKNYNRRQPEEEEES 117
K YE + +YN + PEE+EES
Sbjct: 81 DKKRYEDEKASYN-QAPEEDEES 102
>gi|297674678|ref|XP_002815340.1| PREDICTED: high mobility group protein B2 isoform 1 [Pongo abelii]
gi|297674680|ref|XP_002815341.1| PREDICTED: high mobility group protein B2 isoform 2 [Pongo abelii]
gi|395735499|ref|XP_003776594.1| PREDICTED: high mobility group protein B2 [Pongo abelii]
gi|402870856|ref|XP_003899415.1| PREDICTED: high mobility group protein B2 isoform 1 [Papio anubis]
gi|402870858|ref|XP_003899416.1| PREDICTED: high mobility group protein B2 isoform 2 [Papio anubis]
gi|402871219|ref|XP_003899573.1| PREDICTED: high mobility group protein B2-like [Papio anubis]
gi|90086209|dbj|BAE91657.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|332217748|ref|XP_003258025.1| PREDICTED: high mobility group protein B2 [Nomascus leucogenys]
gi|426346003|ref|XP_004040680.1| PREDICTED: high mobility group protein B2 isoform 1 [Gorilla
gorilla gorilla]
gi|426346005|ref|XP_004040681.1| PREDICTED: high mobility group protein B2 isoform 2 [Gorilla
gorilla gorilla]
gi|426346007|ref|XP_004040682.1| PREDICTED: high mobility group protein B2 isoform 3 [Gorilla
gorilla gorilla]
gi|54696428|gb|AAV38586.1| high-mobility group box 2 [Homo sapiens]
Length = 208
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|32335|emb|CAA78938.1| HMG2B [Homo sapiens]
Length = 186
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 70 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 128
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 129 KEKYEKDIAAY 139
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 53 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 1 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 55
>gi|358372276|dbj|GAA88880.1| nucleosome binding protein (Nhp6a) [Aspergillus kawachii IFO 4308]
Length = 104
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F + RE+ ++++P S VGK GE+WK++S+ D+ PY KA
Sbjct: 21 KDPNAPKRGLSAYMFFANDNREKVREENP-GISFGQVGKMLGERWKALSDTDRRPYEEKA 79
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEES 117
K YE + +YN E+EE S
Sbjct: 80 AADKKRYEDEKASYNAAAEEDEESS 104
>gi|297813579|ref|XP_002874673.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
gi|297320510|gb|EFH50932.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SA+ ++ E R K + NKSV V K GE+WK++SE KAPY A+
Sbjct: 244 DPLKPKHPISAYLIYANERRAALKGE---NKSVIEVAKMTGEEWKNLSEEQKAPYDQMAK 300
Query: 94 KRKVEYEKDMKNYNRRQPEE 113
K+K Y ++M+ Y + EE
Sbjct: 301 KKKEIYLQEMEGYKITKEEE 320
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+PAS++F+F +E R+ ++HP N +V A KWK + E +K Y K
Sbjct: 370 DPNKPKKPASSYFLFCKEARKSVLEEHPGINNSTVTA---HISLKWKELGEEEKQVYNGK 426
Query: 92 AEKRKVEYEKDMKNYNR 108
A + Y+K+++ YN+
Sbjct: 427 AAELMEAYKKEVEEYNK 443
>gi|358337037|dbj|GAA55457.1| structure-specific recognition protein 1 [Clonorchis sinensis]
Length = 723
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN P RP +A+ ++ E R++ K SVA V KA GE+W+++ KA Y
Sbjct: 571 KRVKDPNAPSRPPTAYIMWFNEHRDEISKSIGNPTSVAEVAKAAGERWRNIDSETKAKYQ 630
Query: 90 AKAEKRKVEYEKDMKNY 106
A+ ++ K YE +M+ Y
Sbjct: 631 ARVDELKKNYESEMRIY 647
>gi|118488333|gb|ABK95985.1| unknown [Populus trichocarpa]
Length = 232
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SAFF+F E R + NK+V V K GE+WK+M+E K PY A+
Sbjct: 29 DPLKPKHPLSAFFLFSNERRAALLAE---NKNVLEVAKIAGEEWKNMTEKQKRPYEEIAK 85
Query: 94 KRKVEYEKDMKNYNRRQPEE 113
K K +Y ++M+ Y + + EE
Sbjct: 86 KNKEKYTQEMEAYKQNKDEE 105
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPK+PAS+F +F +E R+ +HP S + + KWK + + +K + KA
Sbjct: 154 DPNKPKKPASSFLLFSKETRKSLVHEHPGINS-STLTAMISVKWKELIQEEKQIWNCKAA 212
Query: 94 KRKVEYEKDMKNYNR 108
+ Y+K+++ Y++
Sbjct: 213 EAMEAYKKELEEYHK 227
>gi|355778495|gb|EHH63531.1| hypothetical protein EGM_16518 [Macaca fascicularis]
Length = 210
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP++ + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPESSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|355687725|gb|EHH26309.1| hypothetical protein EGK_16239 [Macaca mulatta]
Length = 209
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP++ + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPESSVNFAEFSKKCSERWKTMSAKEKSKFEGMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV Y+++MKNY
Sbjct: 65 KSDKVRYDREMKNY 78
>gi|291413997|ref|XP_002723251.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQMCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|194208319|ref|XP_001498869.2| PREDICTED: high mobility group protein B2-like [Equus caballus]
Length = 210
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNK + S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKARGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|223942599|gb|ACN25383.1| unknown [Zea mays]
gi|414881085|tpg|DAA58216.1| TPA: hypothetical protein ZEAMMB73_949955 [Zea mays]
Length = 118
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DP PK+P +AFF FME+FR+ YK++ P KS+ +GKA GEKW +M+
Sbjct: 37 DPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGKACGEKWNTMT 84
>gi|195025405|ref|XP_001986052.1| GH21151 [Drosophila grimshawi]
gi|193902052|gb|EDW00919.1| GH21151 [Drosophila grimshawi]
Length = 744
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KD NKPKRP +AF +++ + REQ K+D+P K V + K GGE WK + DK+ + A
Sbjct: 555 KDSNKPKRPTTAFMLWLNDTREQIKRDNPGIK-VTEIAKKGGEMWKELK--DKSKWDEAA 611
Query: 93 EKRKVEYEKDMKNY 106
K K Y+ +M+NY
Sbjct: 612 SKDKQRYQDEMRNY 625
>gi|426251515|ref|XP_004019467.1| PREDICTED: high mobility group protein B2-like [Ovis aries]
Length = 209
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|426230076|ref|XP_004009107.1| PREDICTED: high mobility group protein B2-like [Ovis aries]
Length = 209
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|149060359|gb|EDM11073.1| rCG63620 [Rattus norvegicus]
Length = 198
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 81 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 139
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 140 KEKYEKDIAAY 150
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y++
Sbjct: 2 SSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDR 61
Query: 102 DMKNY 106
+MKNY
Sbjct: 62 EMKNY 66
>gi|47522942|ref|NP_999228.1| high mobility group protein B2 [Sus scrofa]
gi|123375|sp|P17741.2|HMGB2_PIG RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|164492|gb|AAA31051.1| non-histone protein HMG2 precursor [Sus scrofa]
Length = 210
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|403295709|ref|XP_003938773.1| PREDICTED: high mobility group protein B2 [Saimiri boliviensis
boliviensis]
Length = 158
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 42 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 100
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 101 KEKYEKDIAAY 111
>gi|444732758|gb|ELW73033.1| High mobility group protein B2 [Tupaia chinensis]
Length = 234
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 127 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 185
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 186 KEKYEKDIAAY 196
>gi|444724258|gb|ELW64868.1| High mobility group protein B1 [Tupaia chinensis]
Length = 140
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
K PN KRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY K
Sbjct: 28 KGPNAAKRPPSAFFLFCSEYRPKIKGEHP-GLSIGGVAKKLGEVWNNTAADDKQPYEKKP 86
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 87 AKLKEKYEKDIAAY 100
>gi|312281655|dbj|BAJ33693.1| unnamed protein product [Thellungiella halophila]
Length = 646
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR S F F + R+ KK HP + VGK G+KW+ MS +K PY AKA+
Sbjct: 558 DPNAPKRAMSGFMFFSQMERDNIKKTHP-GIAFGEVGKVLGDKWRQMSAEEKEPYEAKAQ 616
Query: 94 KRKVEYEKDMKNYNRRQP 111
K Y+ ++ +Y QP
Sbjct: 617 VDKKRYKDEISDYKNPQP 634
>gi|296418046|ref|XP_002838655.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634611|emb|CAZ82846.1| unnamed protein product [Tuber melanosporum]
Length = 103
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
+PA+A +K KDPN PKR SA+ F E RE + D+P + VGK GE+WK+
Sbjct: 9 QPAQAAQKK----KDPNAPKRGLSAYMFFANEQRENVRNDNP-GIAFGQVGKVLGERWKA 63
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYN 107
+SE + PY AKA K YE + YN
Sbjct: 64 LSEKQRQPYEAKAAADKKRYEDEKAAYN 91
>gi|395840000|ref|XP_003792858.1| PREDICTED: high mobility group protein B2 [Otolemur garnettii]
Length = 209
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KNDKARYDREMKNY 78
>gi|291395415|ref|XP_002714100.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + + +H S+ K GE W S D+ PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIRSEH-SGLSIGDTAKKLGEMWSEQSAKDEQPYEQKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPN+P+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNEPRGKMSSYAFFVQTCREEHKKKHPDSSINFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKACYDREMKNY 78
>gi|395850653|ref|XP_003797893.1| PREDICTED: uncharacterized protein LOC100942737 [Otolemur
garnettii]
Length = 633
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF F E+R + K +HP S+ V + GE W + +E DK P KA
Sbjct: 513 KDPNAPKRPPSAFFWFCSEYRPKIKGEHP-GLSIGDVAEKLGEMWSNTAEGDKQPEEKKA 571
Query: 93 EKRKVEYEKDM 103
K K +YEKD+
Sbjct: 572 AKLKEKYEKDI 582
>gi|355565174|gb|EHH21663.1| hypothetical protein EGK_04785, partial [Macaca mulatta]
Length = 201
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
R++ K KDPN PKRP SAFF+F E+R + K +HP S+ VGK GE W + DK
Sbjct: 83 RETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVGKKPGEMWNDTAADDK 141
Query: 86 APY 88
PY
Sbjct: 142 HPY 144
>gi|225556517|gb|EEH04805.1| non-histone chromosomal protein 6 [Ajellomyces capsulatus G186AR]
Length = 102
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +APY AKA
Sbjct: 20 KDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKVLGERWKALNEKQRAPYEAKA 78
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEES 117
K YE + +YN Q E++E S
Sbjct: 79 AADKKRYEDEKASYN-AQDEDDESS 102
>gi|320580355|gb|EFW94578.1| high-mobility group non-histone chromosomal protein, putative
[Ogataea parapolymorpha DL-1]
Length = 91
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + +GK GEKWK++ EA KAPY AKAE
Sbjct: 15 DPNAPKRSLSAYMFFANEQRDIVRAENP-GIAFGQIGKLLGEKWKALDEAGKAPYEAKAE 73
Query: 94 KRKVEYEKDMKNYNRRQ 110
K YE + Y + Q
Sbjct: 74 ADKKRYELEKSEYTKSQ 90
>gi|148701877|gb|EDL33824.1| mCG140646 [Mus musculus]
Length = 207
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP V V K GE W + + DK PY KA
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLCVGDVAKKLGELWNNTAGDDKQPYEKKA 149
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 AKLKEKYEKDIAAY 163
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMA 64
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVN 125
+ K YE++MK Y P +EE++K + N
Sbjct: 65 KADKARYEREMKTY---IPPPQEETKKKFKDPN 94
>gi|75218951|sp|O04235.1|SSRP1_VICFA RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein 1
gi|2104679|emb|CAA66480.1| transcription factor [Vicia faba var. minor]
Length = 642
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR S F F + RE KK +P S VG+ GEKWK++S +K PY AKA+
Sbjct: 554 DPNAPKRALSGFMFFSQMERENLKKTNP-GISFTDVGRVLGEKWKNLSAEEKEPYEAKAQ 612
Query: 94 KRKVEYEKDMKNYNRRQP 111
K Y+ ++ Y QP
Sbjct: 613 ADKKRYKDEISGYKNPQP 630
>gi|49250826|gb|AAH74541.1| Ssrp1 protein, partial [Xenopus (Silurana) tropicalis]
Length = 629
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKRP SA+ +++ RE+ K ++P S+ + K GE WKSMS+ K + +AE
Sbjct: 537 DPSAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWKSMSKDKKEEWDRRAE 595
Query: 94 KRKVEYEKDMKNYNRRQPEE 113
+ K +YEK MK YN P E
Sbjct: 596 EAKRDYEKAMKEYNSSTPTE 615
>gi|224058355|ref|XP_002299486.1| high mobility group family [Populus trichocarpa]
gi|222846744|gb|EEE84291.1| high mobility group family [Populus trichocarpa]
Length = 498
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SAFF+F E R + NK+V V K GE+WK+M+E K PY A+
Sbjct: 295 DPLKPKHPLSAFFLFSNERRAALLAE---NKNVLEVAKIAGEEWKNMTEKQKRPYEEIAK 351
Query: 94 KRKVEYEKDMKNYNRRQPEE 113
K K +Y ++M+ Y + + EE
Sbjct: 352 KNKEKYTQEMEAYKQNKDEE 371
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPK+PAS+F +F +E R+ +HP S + + KWK + + +K + KA
Sbjct: 420 DPNKPKKPASSFLLFSKETRKSLVHEHPGINS-STLTAMISVKWKELIQEEKQIWNCKAA 478
Query: 94 KRKVEYEKDMKNYNR 108
+ Y+K+++ Y++
Sbjct: 479 EAMEAYKKELEEYHK 493
>gi|444731734|gb|ELW72082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP + V K GE W + + +K PY KA
Sbjct: 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLPIGDVAKKLGEMWINTAADEKQPYEKKA 142
Query: 93 EKRKVEYEKDMKNYN 107
K K +YEKD+ Y
Sbjct: 143 AKLKEKYEKDIAAYQ 157
>gi|291410693|ref|XP_002721624.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 215
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRTPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|355691926|gb|EHH27111.1| hypothetical protein EGK_17228 [Macaca mulatta]
Length = 196
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D N PKRP S FF+F EF + K +P S+ + K GE WK++++++K PY+ KA
Sbjct: 76 DSNAPKRPPSGFFLFSSEFCPKMKSTNP-GISIGDMVKKLGEMWKNLNDSEKQPYITKAA 134
Query: 94 KRKVEYEKDM 103
K K +YEKD+
Sbjct: 135 KLKEKYEKDV 144
>gi|260806967|ref|XP_002598355.1| hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae]
gi|229283627|gb|EEN54367.1| hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae]
Length = 223
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
V K A+ GR+ K KDPN PKR SAFF++ + R + + HP + V + K G +
Sbjct: 79 VPPKGAEGGRRKRKK-KDPNAPKRAMSAFFMYCADARPKVRAAHP-DFQVGEIAKILGRQ 136
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
WK +S++DKA Y KA+ K Y+K++ Y R
Sbjct: 137 WKEISDSDKAKYEKKAQTEKARYQKELAEYKR 168
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV-AAVGKAGGEKWKSMSEADKAPYVAK 91
KD NKPK SA+ F++E R++++K +P + V K E+WK+M++ +K +
Sbjct: 4 KDKNKPKGKMSAYACFVQECRKEHEKKYPDKQVVFTEFSKKCAERWKTMNDGEKKRFQDL 63
Query: 92 AEKRKVEYEKDMKNY 106
AE K YE++M Y
Sbjct: 64 AETDKRRYEREMAKY 78
>gi|90103305|gb|ABD85497.1| high mobility group box 1-like [Ictalurus punctatus]
Length = 182
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K++ P S+ V K GE W S +K PY KA
Sbjct: 70 KDPNAPKRPPSAFFIFCAEYRPKVKEETP-GLSIGDVAKKLGEMWNKTSAEEKQPYEKKA 128
Query: 93 EKRKVEYEKDMKNYNR 108
K K +YEKD+ Y +
Sbjct: 129 AKLKEKYEKDIAAYRK 144
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 53 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
RE++KK HP + + K E+WK+MS +K + A K YE++MKNY
Sbjct: 4 REEHKKKHPDTSVNFSEFSKKCSERWKTMSAKEKGKFEDMARLDKARYEREMKNY 58
>gi|29290594|emb|CAD83017.1| bM168F16.1 (novel protein similar to high-mobility group box 1
(Hmgb1)) [Mus musculus]
gi|148699130|gb|EDL31077.1| mCG49535 [Mus musculus]
Length = 208
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SAFF+F E+ + K +HP S+ V K GE W + + DK P KA
Sbjct: 90 KDPNAPKRSPSAFFLFCSEYCHKIKGEHP-GLSIGVVAKKLGEMWINTAVYDKQPCEKKA 148
Query: 93 EKRKVEYEKDM 103
K K +YEKD+
Sbjct: 149 TKLKEKYEKDI 159
>gi|326437020|gb|EGD82590.1| hypothetical protein PTSG_03243 [Salpingoeca sp. ATCC 50818]
Length = 210
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G + K KDPN PK+P SA+FVF E R+ + +P+++ V+ K GE+W+ M+E
Sbjct: 125 GGRRRKKKKDPNAPKKPKSAYFVFAETRRDALRAQYPEDR-VSDTAKRTGEEWRGMTEEQ 183
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K P+ KA++ K EY++ + Y
Sbjct: 184 KRPFQLKAQELKQEYDQAVAEY 205
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKP+ + + F +E R + HP N SV V K G +W+ +++ K PY A
Sbjct: 45 DPNKPRGALTPYMCFNKEVRPAIMQQHP-NASVTEVAKLIGAQWRQLTDEQKKPYNDMAR 103
Query: 94 KRKVEYEKDMKNY 106
+ Y++ MKNY
Sbjct: 104 TDRERYKEAMKNY 116
>gi|302851253|ref|XP_002957151.1| hypothetical protein VOLCADRAFT_77427 [Volvox carteri f.
nagariensis]
gi|300257558|gb|EFJ41805.1| hypothetical protein VOLCADRAFT_77427 [Volvox carteri f.
nagariensis]
Length = 94
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PK+P A+ F ++ RE+ K ++P SV +GK GE WK +SE DK Y+
Sbjct: 16 KKVKDPNAPKKPLGAYMWFCKDMRERVKAENP-GMSVTDIGKRLGELWKEVSEEDKKKYL 74
Query: 90 AKAEKRKVEYEKDMKNYNR 108
+AE K Y K+ YN+
Sbjct: 75 KQAEDDKERYNKEAAAYNK 93
>gi|89475586|gb|ABD73318.1| high-mobility group box 1 [Oncorhynchus mykiss]
Length = 154
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPY 143
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS +K +
Sbjct: 2 GKDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 62 LAKLDKVRYEREMRSY 77
>gi|328769557|gb|EGF79601.1| hypothetical protein BATDEDRAFT_89692 [Batrachochytrium
dendrobatidis JAM81]
Length = 99
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K AK G K+ KDP+ PKRP SAF +F +E R + ++++P + S +GK G W+
Sbjct: 11 KVAKRGDDKKKSRKDPDAPKRPLSAFMIFSKENRPRIREENP-DASFGDLGKLLGAAWRE 69
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNY 106
+++ DK Y KA++ K YE++M Y
Sbjct: 70 LNDKDKQVYTDKADEDKGRYEREMSTY 96
>gi|440912073|gb|ELR61675.1| Putative high mobility group protein B3-like protein, partial [Bos
grunniens mutus]
Length = 190
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 14 KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAG 73
K+ N++ G G KDPN PKRP S FF+F EF + K +P S+ V K
Sbjct: 67 KVHYNQEMKDYGSAKGGKKKDPNAPKRPPSGFFLFFSEFCSKIKSTNP-GISIGDVAKKL 125
Query: 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
GE W ++S++ K Y+ K K K +YEKD+ +Y
Sbjct: 126 GEMWNNLSDSKKQLYINKDAKLK-KYEKDVADY 157
Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
A DP KPK SA F++ R+++KK + A K E+WK+MS +K+ +
Sbjct: 2 AKGDPEKPKGKMSAHAFFVQMCRKKHKKTPKVPVNFAEFSKKCSERWKTMSGKEKSTFDE 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV Y ++MK+Y
Sbjct: 62 MAKADKVHYNQEMKDY 77
>gi|46394418|gb|AAS91553.1| AmphiHMG1/2 [Branchiostoma belcheri tsingtauense]
Length = 222
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
V K A+ GR+ K KDPN PKR SAFF++ + R + + HP + V + K G++
Sbjct: 78 VPPKGAEGGRRKRKK-KDPNAPKRAMSAFFMYCADARPKVRAAHP-DFQVGDIAKILGKQ 135
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
WK +S++DKA Y KA+ K Y+K++ Y R
Sbjct: 136 WKEISDSDKAKYEKKAQTEKARYQKELAEYKR 167
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV--GKAGGEKWKSMSEADKAPYVA 90
KD NKPK SA+ F++E R +++K +P NK V + +WK+M++ +K + A
Sbjct: 3 KDKNKPKGKMSAYACFVQECRREHEKKYP-NKQVVFTEFSQKCASRWKTMNDDEKKRFQA 61
Query: 91 KAEKRKVEYEKDMKNY 106
AE K YE+DM Y
Sbjct: 62 LAEADKRRYEQDMAKY 77
>gi|478813|pir||S29857 nonhistone chromosomal protein HMG-1 - human
gi|184251|gb|AAA64970.1| HMG-1 [Homo sapiens]
Length = 216
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPTGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|119584724|gb|EAW64320.1| hCG26831 [Homo sapiens]
Length = 212
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPTGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|116206850|ref|XP_001229234.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183315|gb|EAQ90783.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 96
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 21 PAKAGRKSGKA------AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGG 74
P A +SGKA KDPN PKR SA+ F E R+ ++++P S VGK G
Sbjct: 2 PKAAKSRSGKAEKKTRQKKDPNAPKRGLSAYMFFANEQRDNVREENP-GVSFGQVGKILG 60
Query: 75 EKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
E+WK++S+ +APY AKA K YE + + YN
Sbjct: 61 ERWKALSDKQRAPYEAKAAADKKRYEDEKQAYN 93
>gi|307105669|gb|EFN53917.1| hypothetical protein CHLNCDRAFT_136125 [Chlorella variabilis]
Length = 101
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ F + R + KK P + S+ VGKA G WK +S+ +K PY KA+
Sbjct: 27 DPNAPKRPLSAYMYFASDKRVEMKKSDP-SLSLGEVGKATGAAWKELSDKEKEPYQKKAD 85
Query: 94 KRKVEYEKDMKNYNRR 109
K K YEK+ Y ++
Sbjct: 86 KDKARYEKEKAAYEKK 101
>gi|444722008|gb|ELW62714.1| High mobility group protein B1 [Tupaia chinensis]
Length = 224
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF F E+R + K +HP S+ V K GE W + + K PY KA
Sbjct: 90 KDPNAPKRPPSAFFFFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWSNTAADAKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+P KP+ S++ F++ RE++KK HP + + + K E+WK++S +K + A
Sbjct: 5 NPTKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTVSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|453083241|gb|EMF11287.1| HMG_box-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 109
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K K+ TR +K + K GK KDPN PKR SA+ F + R++ ++D+P K
Sbjct: 3 KEKTTTRGSKKAAGKA------DGGKRKKDPNMPKRGLSAYMFFANDTRDKVREDNPGIK 56
Query: 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
VGK GE+WK+++E KAPY AKA K YE++ Y
Sbjct: 57 -FGEVGKLLGERWKALNEKQKAPYEAKAAADKKRYEEEKAAYT 98
>gi|407263446|ref|XP_003084790.3| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 424
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E+ + K +HP S+ V K GE W + + DK PY KA
Sbjct: 99 KDPNAPKRPPLAFFLFYSEYYPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 157
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 158 AKLKEKYEKDIAAY 171
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
P KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A+
Sbjct: 14 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 73
Query: 94 KRKVEYEKDMKNY 106
K YE+ MK Y
Sbjct: 74 ADKAHYERKMKTY 86
>gi|148707462|gb|EDL39409.1| mCG8212 [Mus musculus]
Length = 145
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
+PAK G+K KDPN PKRP S FF+F EF + K +P S+ V K GE WK+
Sbjct: 28 RPAKGGKK-----KDPNAPKRPPSGFFLFCSEFHPKIKFTNP-GISIGDVAKKLGEMWKN 81
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
+S+++ A YV KA K K + EK + ++ +
Sbjct: 82 LSDSE-AAYVTKAAKLKEKDEKGVSDWQSK 110
>gi|448516014|ref|XP_003867470.1| Nhp10 protein [Candida orthopsilosis Co 90-125]
gi|380351809|emb|CCG22032.1| Nhp10 protein [Candida orthopsilosis]
Length = 335
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 8/106 (7%)
Query: 33 KDPNKPKRPASAFFVFMEE----FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
+DP+ PKRP +A+ +F E+ R+Q ++D P+N + + KA E WK++SE D+ P+
Sbjct: 161 RDPDLPKRPTNAYLLFCEQEKERLRQQQQED-PENNT-RDLSKAMTEAWKALSEEDRKPF 218
Query: 89 VAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEV--NDEDDDEE 132
E+ +V Y+K+M YN+++ E E++ EV N+ DD E
Sbjct: 219 YKLYEEDRVRYQKEMAEYNQKKEAEMEQAGDDEGEVDTNEGGDDNE 264
>gi|406862701|gb|EKD15750.1| nucleosome binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 102
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
++ K KDPN PKR SA+ F E RE ++++P + VGK GE+WK++++ +
Sbjct: 14 RTEKKKKDPNAPKRGLSAYMFFANEQRENVREENP-GITFGQVGKVLGERWKALNDKQRT 72
Query: 87 PYVAKAEKRKVEYEKDMKNYNRRQPEEE 114
PY AKA + K YE + +YN EEE
Sbjct: 73 PYEAKAAQDKKRYEDEKASYNADAEEEE 100
>gi|26342222|dbj|BAC34773.1| unnamed protein product [Mus musculus]
Length = 215
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|67524855|ref|XP_660489.1| hypothetical protein AN2885.2 [Aspergillus nidulans FGSC A4]
gi|74597086|sp|Q5B995.1|NHP6_EMENI RecName: Full=Non-histone chromosomal protein 6
gi|40744280|gb|EAA63456.1| hypothetical protein AN2885.2 [Aspergillus nidulans FGSC A4]
gi|259486178|tpe|CBF83812.1| TPA: Non-histone chromosomal protein 6
[Source:UniProtKB/Swiss-Prot;Acc:Q5B995] [Aspergillus
nidulans FGSC A4]
Length = 106
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 22 AKAGRKSG-KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KA R++G + KDPN PKR SA+ F + R++ ++++P S VGK GEKWKS+
Sbjct: 10 TKATRETGGRKKKDPNAPKRGLSAYMFFANDNRDKVREENP-GISFGQVGKMLGEKWKSL 68
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEES 117
S+ ++ PY KA K YE + Y + EE+EES
Sbjct: 69 SDKERKPYEDKAAADKKRYEDEKAAYKAGEAEEDEES 105
>gi|448079731|ref|XP_004194450.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
gi|359375872|emb|CCE86454.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+++ + KDP+ PKR SA+ F E R+ + ++P S VGK GEKWK+MS DK
Sbjct: 7 KRASRKKKDPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKAMSSEDK 65
Query: 86 APYVAKAEKRKVEYEKDMKNYNRR 109
PY KAE K YEK+ Y ++
Sbjct: 66 TPYETKAEADKKRYEKEKAEYAKK 89
>gi|441618163|ref|XP_003271355.2| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 206
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PK P S FF+F EF + K P S+ V K GE W ++++++K PY+ KA
Sbjct: 95 DPNAPKMPQSGFFLFCSEFCLKIKSTKP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 153
Query: 94 KRKVEYEKDMKNY 106
K K YEKD+ +Y
Sbjct: 154 KLK--YEKDVADY 164
>gi|392876654|gb|AFM87159.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M +K PY +A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY 88
K A+DP KP+ +++ +F++ RE++KK HP K S K E WK+MS +K+ +
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSEGWKTMSAKEKSKF 75
Query: 89 VAKAEKRKVEYEKDMKNY 106
+++ K YE +MK+Y
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|146218567|gb|AAI40014.1| High-mobility group box 1 [synthetic construct]
gi|146218571|gb|AAI40019.1| High-mobility group box 1 [synthetic construct]
gi|146327050|gb|AAI41845.1| High-mobility group box 1 [Homo sapiens]
Length = 215
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK Y KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQHYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|37779034|gb|AAP20177.1| high mobility group protein [Pagrus major]
Length = 200
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F +FR + K D+P S+ K GE W
Sbjct: 76 NYIPPKGHKK--KRFKDPNAPKRPPSAFFLFCADFRPKVKGDYP-GLSIGDTAKKLGEMW 132
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S S +K PY KA K K +Y+KD+ Y
Sbjct: 133 NSSSAEEKQPYEKKAAKLKEKYDKDIVAY 161
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + A K E+WK+MS +K +
Sbjct: 3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKRCSERWKTMSPKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++MKNY
Sbjct: 63 AKLDKVRYEREMKNY 77
>gi|392879586|gb|AFM88625.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M +K PY +A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY 88
K A+DP KP+ +++ +F++ RE++KK HP K S K E+WK+MS +K+ +
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMSAKEKSKF 75
Query: 89 VAKAEKRKVEYEKDMKNY 106
+++ K YE +MK+Y
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|387914724|gb|AFK10971.1| high mobility group box 1 [Callorhinchus milii]
Length = 226
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M +K PY +A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY 88
K A+DP KP+ ++ +F++ RE++KK HP K S K E+WK+MS +K+ +
Sbjct: 16 KMARDPKKPRGRLTSHALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMSAKEKSKF 75
Query: 89 VAKAEKRKVEYEKDMKNY 106
+++ K YE +MK+Y
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|392884154|gb|AFM90909.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M +K PY +A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY 88
K A+DP KP+ +++ +F++ RE++KK HP K S K E+W++MS +K+ +
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWETMSAKEKSKF 75
Query: 89 VAKAEKRKVEYEKDMKNY 106
+++ K YE +MK+Y
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|392878936|gb|AFM88300.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M +K PY +A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY 88
K A+DP KP+ +++ +F++ RE++KK HP K S K E+WK+MS +K+ +
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMSAKEKSKF 75
Query: 89 VAKAEKRKVEYEKDMKNY 106
+++ K YE +MK+Y
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|344253440|gb|EGW09544.1| High mobility group protein B1 [Cricetulus griseus]
Length = 169
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KD N PKRP SAFF+F E+ + K +HP S+ V K GEKW + + DK PY KA
Sbjct: 89 KDSNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSLGDVAKKLGEKWNNTAAGDKQPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDIVAY 161
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ E++KK HP + + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCWEEHKKKHPDASVNFSELLKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KAGKAHYEREMKTY 78
>gi|148668679|gb|EDL00993.1| mCG49874 [Mus musculus]
Length = 140
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKRP SAFF+F E R + K DHP S+ K G W S DK PY KA K
Sbjct: 41 PNAPKRPPSAFFLFCSENRPEIKIDHP-GLSIGDTSKKLGVMWSEQSAKDKQPYEQKAAK 99
Query: 95 RKVEYEKDMKNY 106
K +YEKD+ +
Sbjct: 100 PKEKYEKDIAAF 111
>gi|367006853|ref|XP_003688157.1| hypothetical protein TPHA_0M01480 [Tetrapisispora phaffii CBS 4417]
gi|357526464|emb|CCE65723.1| hypothetical protein TPHA_0M01480 [Tetrapisispora phaffii CBS 4417]
Length = 93
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + +++ + KDPN PKR SA+ F E R+ + ++P + S +G+ GEKW+++
Sbjct: 4 PREIKKRTHRRKKDPNAPKRAMSAYMFFANETRDIVRAENP-DVSFGQIGRLLGEKWRAL 62
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYN 107
++ DK P+ AKA+ K YE + + YN
Sbjct: 63 TDEDKGPFEAKAQADKKRYESEKELYN 89
>gi|392876858|gb|AFM87261.1| high mobility group protein [Callorhinchus milii]
gi|392878442|gb|AFM88053.1| high mobility group protein [Callorhinchus milii]
gi|392880194|gb|AFM88929.1| high mobility group protein [Callorhinchus milii]
gi|392881188|gb|AFM89426.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M +K PY +A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPY 88
K A+DP KP+ +++ +F++ RE++KK HP K S K E+WK+MS +K+ +
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMSAKEKSKF 75
Query: 89 VAKAEKRKVEYEKDMKNY 106
+++ K YE +MK+Y
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|380476672|emb|CCF44585.1| non-histone chromosomal protein 6 [Colletotrichum higginsianum]
Length = 96
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E + PY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKILGERWKALNEKQRQPYE 76
Query: 90 AKAEKRKVEYEKDMKNYN 107
AKA K YE + + YN
Sbjct: 77 AKAATDKKRYEDEKQAYN 94
>gi|302411796|ref|XP_003003731.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|261357636|gb|EEY20064.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|346978438|gb|EGY21890.1| nucleosome binding protein [Verticillium dahliae VdLs.17]
Length = 102
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+K+ +A KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +
Sbjct: 13 KKAKRAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNEKQR 71
Query: 86 APYVAKAEKRKVEYEKDMKNYN 107
PY AKA K YE + YN
Sbjct: 72 GPYEAKAVADKKRYEDEKAAYN 93
>gi|313224350|emb|CBY20139.1| unnamed protein product [Oikopleura dioica]
Length = 91
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
G+A KDPN PKRP +AFF+F + R KK P+ V+ V K G WK + K Y
Sbjct: 2 GRAKKDPNAPKRPQTAFFLFAADNRADAKKCLPEGSRVSEVAKKLGVMWKEVDAKTKEKY 61
Query: 89 VAKAEKRKVEYEKDMKNYNRRQPEEEEESE 118
++AE+ K +Y ++M+ Y Q +SE
Sbjct: 62 QSQAEENKAKYAEEMEAYRNSQAVTANDSE 91
>gi|115396468|ref|XP_001213873.1| nonhistone chromosomal protein 6A [Aspergillus terreus NIH2624]
gi|114193442|gb|EAU35142.1| nonhistone chromosomal protein 6A [Aspergillus terreus NIH2624]
Length = 101
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R++ ++++P + VGK GEKWK++SE D+ PY KA
Sbjct: 19 DPNAPKRGLSAYMFFANENRDKVREENP-GITFGQVGKMLGEKWKALSEDDRRPYEEKAA 77
Query: 94 KRKVEYEKDMKNYNRRQPEEEEES 117
K YE + +YN E+EE S
Sbjct: 78 ADKKRYEDEKASYNAAGDEDEESS 101
>gi|195123163|ref|XP_002006078.1| GI18750 [Drosophila mojavensis]
gi|193911146|gb|EDW10013.1| GI18750 [Drosophila mojavensis]
Length = 734
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D NKPKRP +AF +++ E REQ K+D+P K V + K GGE WK + DK+ + A
Sbjct: 557 DSNKPKRPTTAFMLWLSETREQIKRDNPGIK-VTEIAKKGGEMWKELK--DKSKWEELAS 613
Query: 94 KRKVEYEKDMKNY 106
K K Y+ M+NY
Sbjct: 614 KDKQRYQDAMRNY 626
>gi|412992276|emb|CCO19989.1| nucleosome binding protein [Bathycoccus prasinos]
Length = 94
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+F FM + R + K +P K V VGK GE W++MS+++K PY KA+
Sbjct: 20 DPNAPKRNLSAYFFFMNDQRAKVVKANPDMK-VTEVGKKLGELWRAMSDSEKVPYNKKAD 78
Query: 94 KRKVEYEK 101
KV YEK
Sbjct: 79 ADKVRYEK 86
>gi|309265997|ref|XP_003086707.1| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 433
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F + + K +HP + S+ V K GE W + + DK PY KA
Sbjct: 89 KDPNAPKRPPSAFFLFYSVYYPKIKGEHP-DLSIGDVAKKLGEMWNNAAADDKQPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDIAAY 161
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ FM+ R+++KK HP + + + K E+WK+MS +K + A
Sbjct: 3 DPKKPRGKMSSYAFFMQTCRKEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 62
Query: 93 EKRKVEYEKDMKNY 106
+ K Y++ +K Y
Sbjct: 63 KADKARYKRKIKTY 76
>gi|238880555|gb|EEQ44193.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 310
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
A+DP+ PKRP +A+ +F E +E+ K+D P + + + K+ E WK++SE + PY
Sbjct: 148 ARDPDLPKRPTNAYLIFCEMEKERIKQDDP---NASDLSKSMTEAWKNLSEERRRPYYKL 204
Query: 92 AEKRKVEYEKDMKNYNRR 109
E ++ Y+++M YN++
Sbjct: 205 YEDDRIRYQREMAEYNQK 222
>gi|296470699|tpg|DAA12814.1| TPA: high mobility group box 3-like [Bos taurus]
Length = 197
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP S FF+F EF + K +P S+ V K GE W ++S++ K YV K
Sbjct: 85 KDPNAPKRPPSGFFLFFSEFCSEIKSTNP-GISIGDVAKKLGEMWNNLSDSKKQLYVNKD 143
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 144 AKLK-KYEKDVADY 156
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
A DP KPK SA F++ R+++KK + A K E+WK+MS +K+ +
Sbjct: 2 AKGDPEKPKGKMSAHAFFVQMCRKKHKKTPKVPVNFAEFSKKCSERWKTMSGKEKSTFDE 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV Y ++MK+Y
Sbjct: 62 MAKADKVHYNQEMKDY 77
>gi|261194046|ref|XP_002623428.1| nucleosome binding protein [Ajellomyces dermatitidis SLH14081]
gi|239588442|gb|EEQ71085.1| nucleosome binding protein [Ajellomyces dermatitidis SLH14081]
gi|327354542|gb|EGE83399.1| nonhistone chromosomal protein 6A [Ajellomyces dermatitidis ATCC
18188]
Length = 101
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E +APY AKA
Sbjct: 19 KDPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNEKQRAPYEAKA 77
Query: 93 EKRKVEYEKDMKNYNRRQPEEE 114
K YE + +YN + ++E
Sbjct: 78 AADKKRYEDEKASYNAQDDDDE 99
>gi|62087576|dbj|BAD92235.1| high-mobility group box 1 variant [Homo sapiens]
Length = 176
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 92 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 150
Query: 93 EKRKVEYEK 101
K K +YEK
Sbjct: 151 AKLKEKYEK 159
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 7 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 66
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 67 KADKARYEREMKTY 80
>gi|353351504|emb|CBX36444.1| high-mobility-group-1 protein [Plecoglossus altivelis]
Length = 204
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K + P ++ V K GE W DK PY KA
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKVKGETP-GPTIGDVAKKLGEMWNGTCAEDKQPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDIAAY 161
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 3 KDPTKPRGKTSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++MKNY
Sbjct: 63 AKLDKVRYEREMKNY 77
>gi|351705938|gb|EHB08857.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 176
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP S FF+F E+ + K +HP S+ V K E W + + DK PY KA
Sbjct: 28 KDPNAPKRPPSTFFLFCSEYCPKIKGEHP-GLSIGDVAKKLEEMWNNAAADDKQPYEKKA 86
Query: 93 EKRKVEYEKDMKNY 106
K K YEKD+ Y
Sbjct: 87 AKLKENYEKDIAAY 100
>gi|403286915|ref|XP_003934714.1| PREDICTED: high mobility group protein B1-like isoform 1 [Saimiri
boliviensis boliviensis]
gi|403286917|ref|XP_003934715.1| PREDICTED: high mobility group protein B1-like isoform 2 [Saimiri
boliviensis boliviensis]
gi|403286919|ref|XP_003934716.1| PREDICTED: high mobility group protein B1-like isoform 3 [Saimiri
boliviensis boliviensis]
gi|403286921|ref|XP_003934717.1| PREDICTED: high mobility group protein B1-like isoform 4 [Saimiri
boliviensis boliviensis]
Length = 206
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E+R + K ++P S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIKGEYP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S+ F++ RE++KK HP + + + K E+WK+MS +K A
Sbjct: 5 DPKKLRGKMSSCAFFVQTCREEHKKQHPDSSVNFSEFSKKCSERWKTMSAKEKGKVEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|356506416|ref|XP_003521979.1| PREDICTED: FACT complex subunit SSRP1-like [Glycine max]
Length = 614
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KPAK K KDPN PKR S F F + RE KK +P S VG+ GEKWK
Sbjct: 515 KPAK---KESNKEKDPNAPKRAMSGFMFFSKLERENLKKTNP-GISFTDVGRVLGEKWKK 570
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP 111
+S +K PY AKA + K Y ++ Y QP
Sbjct: 571 LSAEEKEPYEAKAREDKKRYMDEISGYKNPQP 602
>gi|340520749|gb|EGR50985.1| predicted protein [Trichoderma reesei QM6a]
Length = 83
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+DPN PKR SA+ F E RE ++++P S VGK GE+WK++++ +APY AKA
Sbjct: 2 QDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNDKQRAPYEAKA 60
Query: 93 EKRKVEYEKDMKNYNRRQPEE 113
K YE + + YN Q E+
Sbjct: 61 AADKKRYEDEKQAYNADQEED 81
>gi|149628522|ref|XP_001521757.1| PREDICTED: high mobility group protein B2-like, partial
[Ornithorhynchus anatinus]
Length = 106
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA
Sbjct: 40 DPNAPKRPPSAFFLFCSEQRPKIKSEHP-GLSIGDTAKKLGELWSEQSAKDKLPYEQKAA 98
Query: 94 KRKVEYEK 101
K K +YEK
Sbjct: 99 KLKEKYEK 106
>gi|341900759|gb|EGT56694.1| hypothetical protein CAEBREN_25379 [Caenorhabditis brenneri]
Length = 699
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKR SA+ +++ R K++ SVA V K GG+KWK+MS DK + AK EK
Sbjct: 553 PNAPKRATSAYLLWLNANRASLKEE---GDSVADVAKKGGQKWKTMSADDKKEWEAKYEK 609
Query: 95 RKVEYEKDMKNY 106
KV YE +MK Y
Sbjct: 610 EKVRYEAEMKEY 621
>gi|320583540|gb|EFW97753.1| hypothetical protein HPODL_0383 [Ogataea parapolymorpha DL-1]
Length = 2078
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKD-HPKNKSVAA-VGKAGG 74
V KK A + KDP PKRP +A+ +F E +E+ KK K+ V + + KA
Sbjct: 1924 VAKKKRGANTLKKQRLKDPTIPKRPTNAYLIFCEMEKERVKKQIESKDPGVPSDLSKAMT 1983
Query: 75 EKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDD 130
E W+++ + + PY E+ ++ Y++++K YN +Q + K + D DD+
Sbjct: 1984 EAWRNLDDVSRKPYYELYEQDRLRYQREIKEYNSKQKNGKAGDLKKDLDEPDHDDE 2039
>gi|444708344|gb|ELW49421.1| High mobility group protein B1 [Tupaia chinensis]
Length = 302
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F ++R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSDYRPKIK-EHP-GLSIGDVAKKLGEMWNNTATDDKQPYEKKA 147
Query: 93 EKRKVEYEKDMKNYN 107
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDIAAYQ 162
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ +E++KK+HP + + + K E+WK MS K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCQEEHKKEHPGVSVNFSEFSKKCSERWKIMSAKKKGKFEDTA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV YE+++K Y
Sbjct: 65 KADKVHYEREIKTY 78
>gi|290998589|ref|XP_002681863.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
gi|284095488|gb|EFC49119.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
Length = 219
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
AG+KS K KDPN PK+P + +F+F +E RE K + KS + V K GE W S+S+
Sbjct: 2 AGKKSTKK-KDPNAPKKPKTGYFLFCDEHREAAKAKTGEKKSASEVSKVLGEMWNSLSDE 60
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQP 111
K PY K +K Y M+ Y + +P
Sbjct: 61 QKKPYNDKYKKSLDGYNAQMEEYKKNKP 88
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
RP +++ +F +E R++ ++ K V V K G WK MS+ K PY+A+AEK K Y
Sbjct: 121 RPLTSYMIFSQEMRKKLLEEDSTLK-VTEVAKKVGALWKKMSDEQKKPYIAQAEKLKAAY 179
Query: 100 EKDMKNYN 107
+ + Y+
Sbjct: 180 KVQKEEYD 187
>gi|440911425|gb|ELR61099.1| High mobility group protein B3, partial [Bos grunniens mutus]
Length = 192
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PA+ G+K KDP PKR S +F EF + K HP S+ V K GE W ++
Sbjct: 82 PARGGKK-----KDPKAPKRLPSGCLLFCSEFHPKIKSTHP-GISIRDVAKKLGEMWNNL 135
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
S+++K PY+ KA K K +YEKD+ ++ R
Sbjct: 136 SDSEKQPYINKAAKLK-KYEKDVADHKSR 163
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV----AAVGKAGGEKWKSMSEADKA 86
A DP KPK A+ F++ RE++KK KN V A K E+WK+MS +K+
Sbjct: 4 AISDPKKPKGKMCAYAFFVQMCREEHKK---KNSEVPVNFAEFSKKCSERWKTMSRKEKS 60
Query: 87 PYVAKAEKRKVEYEKDMKNY 106
+ A+ K+ Y+++MK+Y
Sbjct: 61 KFDEMAKVYKMHYDQEMKDY 80
>gi|307192730|gb|EFN75838.1| High mobility group protein DSP1 [Harpegnathos saltator]
Length = 205
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+++P + R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W
Sbjct: 103 HEEPERPTRRGTKRYRDKDAPKRALSAFFYFCQELRSKMRELHPE-MGVGEIAKELGKLW 161
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR----QPEE 113
S K+ Y+A AE+ + YE+++ YN+R PEE
Sbjct: 162 MSTDLQTKSKYMAIAEEDRARYEREIIAYNKRVKNYDPEE 201
>gi|221045048|dbj|BAH14201.1| unnamed protein product [Homo sapiens]
Length = 174
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEK 101
K K +YEK
Sbjct: 149 AKLKEKYEK 157
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|225706046|gb|ACO08869.1| High mobility group-T protein [Osmerus mordax]
Length = 204
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F +FR + K + P ++ V K GE W DK PY KA
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKVKGETP-GLTIGDVAKKLGEMWNGTCAEDKQPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDIAAY 161
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 92 AEKRKVEYEKDMKNY 106
A+ KV YE++MKNY
Sbjct: 63 AKLDKVRYEREMKNY 77
>gi|148696675|gb|EDL28622.1| mCG11166 [Mus musculus]
Length = 160
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 43 NAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 101
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 102 KEKYEKDIAAY 112
>gi|74153177|dbj|BAB27638.3| unnamed protein product [Mus musculus]
Length = 191
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|224078343|ref|XP_002197989.1| PREDICTED: transcription factor Sox-18A-like [Taeniopygia guttata]
Length = 417
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
AGR GKAA+D ++ +RP +AF V+ ++ R++ + +P + A + K G+ WK++S +
Sbjct: 87 AGRPEGKAAED-SRIRRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGQSWKALSAS 144
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRR 109
DK P+V +AE+ ++++ +D NY R
Sbjct: 145 DKRPFVEEAERLRIQHLQDHPNYKYR 170
>gi|6680229|ref|NP_032278.1| high mobility group protein B2 [Mus musculus]
gi|1708259|sp|P30681.3|HMGB2_MOUSE RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|609169|emb|CAA86727.1| high mobility group 2 protein [Mus musculus]
gi|12834643|dbj|BAB22988.1| unnamed protein product [Mus musculus]
gi|12842629|dbj|BAB25672.1| unnamed protein product [Mus musculus]
gi|12849395|dbj|BAB28323.1| unnamed protein product [Mus musculus]
gi|52789313|gb|AAH83108.1| High mobility group box 2 [Mus musculus]
gi|55777186|gb|AAH46759.1| High mobility group box 2 [Mus musculus]
gi|74179666|dbj|BAE22481.1| unnamed protein product [Mus musculus]
gi|74179668|dbj|BAE22482.1| unnamed protein product [Mus musculus]
gi|74226660|dbj|BAE26982.1| unnamed protein product [Mus musculus]
Length = 210
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|11527222|gb|AAG36939.1|AF267733_1 high mobility group protein B2 [Mus musculus]
gi|12805183|gb|AAH02050.1| High mobility group box 2 [Mus musculus]
gi|74150328|dbj|BAE32214.1| unnamed protein product [Mus musculus]
gi|148672860|gb|EDL04807.1| mCG4647 [Mus musculus]
Length = 210
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|224080027|ref|XP_002305996.1| high mobility group family [Populus trichocarpa]
gi|222848960|gb|EEE86507.1| high mobility group family [Populus trichocarpa]
Length = 165
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 55/84 (65%)
Query: 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102
+AFF F+E+FR+++++ +P KS+ VGKA GEKWK+M+ +K Y A +++ E+++
Sbjct: 82 TAFFYFLEDFRKEFQEQNPDVKSMREVGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRA 141
Query: 103 MKNYNRRQPEEEEESEKSMSEVND 126
Y +R+ E+E + SE ++
Sbjct: 142 TSEYIKRKESGEDEDPEDASEFDE 165
>gi|392352276|ref|XP_003751165.1| PREDICTED: high mobility group protein B1 [Rattus norvegicus]
Length = 187
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEK 101
K K +YEK
Sbjct: 149 AKLKEKYEK 157
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|74185387|dbj|BAE30167.1| unnamed protein product [Mus musculus]
Length = 181
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|358255365|dbj|GAA57072.1| high mobility group protein B1, partial [Clonorchis sinensis]
Length = 778
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PA G KS K KDPN PK+ SAFF+F + R + K DHP K V+ + K G++W++
Sbjct: 620 PADEG-KSRKRKKDPNAPKKALSAFFLFCNDERPKVKADHPDWK-VSEIAKELGKRWETC 677
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+K+ Y ++A+ K YEK + R
Sbjct: 678 K--NKSKYESQAQVEKQRYEKALPGPRR 703
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
AKD +KPK + + +F++ KK HP K E+WK+++ +K +
Sbjct: 542 AKDKSKPKGALTPYALFLQSMHADQKKKHPSVTLDFKTFSKECSEQWKNLTAKEKKKFED 601
Query: 91 KAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVN 125
A K K Y K+M++Y P +E +S K + N
Sbjct: 602 LAAKDKERYRKEMQSY--EPPADEGKSRKRKKDPN 634
>gi|47227840|emb|CAG09003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 199
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F EFR + K ++P ++ K GE W
Sbjct: 76 NYVPPKGHKK--KRFKDPNAPKRPPSAFFLFCAEFRPKVKSENP-GLTIGDTAKKLGEMW 132
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S + DK PY KA K K +Y+KD+ Y
Sbjct: 133 NSKTAEDKQPYEKKAAKLKEKYDKDIVAY 161
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP + + A K E+WK+MS +K +
Sbjct: 3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSPKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|335892928|gb|AEH59759.1| high mobility group box 1 [Lethenteron camtschaticum]
Length = 208
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G + + KDPN PKRP SAFF++ E+R + + ++P ++ ++ K GE W + +
Sbjct: 83 GERGSRKKKDPNAPKRPPSAFFIYCAEYRSKVRAENP-GLTIGSIAKKLGEMWNNAPADE 141
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K+ Y K K K +Y+KDM +Y
Sbjct: 142 KSIYERKTAKLKEKYDKDMASY 163
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK +P+ + + A K E+WK+MSE +K + A+ KV Y++
Sbjct: 14 SSYAYFVQTCREEHKKKNPEASVNFAEFSKKCSERWKTMSEKEKTRFEDMAKVDKVRYDR 73
Query: 102 DMKNY 106
+MK Y
Sbjct: 74 EMKTY 78
>gi|1419611|emb|CAA67363.1| HMG [Lampetra fluviatilis]
Length = 208
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G + + KDPN PKRP SAFF++ E+R + + ++P ++ ++ K GE W + +
Sbjct: 83 GERGSRKKKDPNAPKRPPSAFFIYCAEYRSKVRAENP-GLTIGSIAKKLGEMWNNAPADE 141
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K+ Y K K K +Y+KDM +Y
Sbjct: 142 KSIYERKTAKLKEKYDKDMASY 163
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S++ F++ RE++KK +P+ + + A K E+WK+MSE +K + A+ KV Y++
Sbjct: 14 SSYAYFVQTCREEHKKKNPEASVNFAEFSKKCSERWKTMSEKEKTRFEDMAKVDKVRYDR 73
Query: 102 DMKNY 106
+MK Y
Sbjct: 74 EMKTY 78
>gi|332025495|gb|EGI65658.1| High mobility group protein DSP1 [Acromyrmex echinatior]
Length = 204
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W S
Sbjct: 105 PERPTRRGTKRYRDKDAPKRALSAFFYFCQELRSKMRELHPE-MGVGDIAKELGKLWMST 163
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRR----QPEE 113
K+ Y+A AE+ + YE+++ YN+R PEE
Sbjct: 164 DLQTKSKYMAIAEEDRARYEREIIAYNKRVKNYDPEE 200
>gi|448084218|ref|XP_004195549.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
gi|359376971|emb|CCE85354.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+++ + KDP+ PKR SA+ F E R+ + ++P S VGK GEKWK+M+ DK
Sbjct: 7 KRASRKKKDPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKAMTSDDK 65
Query: 86 APYVAKAEKRKVEYEKDMKNYNRR 109
PY +KAE K YEK+ Y ++
Sbjct: 66 TPYESKAEADKKRYEKEKAEYAKK 89
>gi|395542387|ref|XP_003773114.1| PREDICTED: high mobility group protein B2 isoform 1 [Sarcophilus
harrisii]
gi|395542389|ref|XP_003773115.1| PREDICTED: high mobility group protein B2 isoform 2 [Sarcophilus
harrisii]
Length = 207
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY K K
Sbjct: 93 NAPKRPPSAFFLFCAEHRPKIKSEHP-GLSIGDTAKKLGELWSEQSAKDKLPYEQKVAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSPVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>gi|294463267|gb|ADE77169.1| unknown [Picea sitchensis]
Length = 482
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
+K A+ KS + KDP+KPK P +AFF F E R ++ N +V + K GE+WK
Sbjct: 234 QKDAEGKEKSKRKEKDPSKPKHPVTAFFAFTNERRAALLEE---NHNVLQIAKILGEEWK 290
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEE 113
+M++ ++APY A + K +Y +M+ Y +++ EE
Sbjct: 291 NMTKEERAPYEQIAAEAKEKYMGEMELYKQKKAEE 325
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 59/96 (61%), Gaps = 5/96 (5%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPN+PK+P ++F +F +E R++ ++ P N ++ A+ KWK + A+K +V +
Sbjct: 377 DPNRPKKPPTSFLLFSKETRKKLVQERPGVNNTTINALISL---KWKDLGTAEKQKWVDE 433
Query: 92 AEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDE 127
A V+Y+K+++ YN+ +E++E + +S +DE
Sbjct: 434 AAGAMVQYKKEVEEYNKLHVKEQQEEQTHISFEHDE 469
>gi|126331239|ref|XP_001365344.1| PREDICTED: high mobility group protein B2-like [Monodelphis
domestica]
Length = 207
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY K K
Sbjct: 93 NAPKRPPSAFFLFCAEHRPKIKSEHP-GLSIGDTAKKLGELWSEQSAKDKLPYEQKVAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSPVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>gi|355700906|gb|EHH28927.1| hypothetical protein EGK_09214, partial [Macaca mulatta]
Length = 263
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87
+ K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK P
Sbjct: 85 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQP 143
Query: 88 YVAKAEKRKVEYEK 101
Y KA K K +YEK
Sbjct: 144 YEKKAAKLKEKYEK 157
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|281350894|gb|EFB26478.1| hypothetical protein PANDA_002732 [Ailuropoda melanoleuca]
Length = 157
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEK 101
K K +YEK
Sbjct: 149 AKLKEKYEK 157
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|395526464|ref|XP_003765383.1| PREDICTED: high mobility group protein B4 [Sarcophilus harrisii]
Length = 207
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP PKRP S+FF+F E + K D+P + SV V K GE W SE DK PY KA
Sbjct: 92 DPKAPKRPPSSFFLFSREHYTKIKSDNP-HWSVVQVAKLLGEMWSKKSEQDKQPYEEKAA 150
Query: 94 KRKVEYEKDMKNY 106
+ + +Y +++ Y
Sbjct: 151 RLRAKYHQELMTY 163
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
KPK S++ F+ R ++K+ P + K EKWK++S+ +K+ Y A A
Sbjct: 7 KPKVNLSSYVHFLLNCRNKHKEQQPNAYINFKEFSKRCSEKWKTISKHEKSKYEAIARLD 66
Query: 96 KVEYEKDMKNY 106
K Y+K+MKNY
Sbjct: 67 KARYQKEMKNY 77
>gi|308238179|ref|NP_001184126.1| structure specific recognition protein 1 [Xenopus (Silurana)
tropicalis]
Length = 695
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKRP SA+ +++ RE+ K ++P S+ + K GE WKSMS+ K + +AE
Sbjct: 537 DPSAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWKSMSKDKKEEWDRRAE 595
Query: 94 KRKVEYEKDMKNYNRRQP 111
+ K +YEK MK YN P
Sbjct: 596 EAKRDYEKAMKEYNSSTP 613
>gi|448530095|ref|XP_003869985.1| Nhp6a non-histone chromatin component [Candida orthopsilosis Co
90-125]
gi|354547725|emb|CCE44460.1| hypothetical protein CPAR2_402610 [Candida parapsilosis]
gi|380354339|emb|CCG23854.1| Nhp6a non-histone chromatin component [Candida orthopsilosis]
Length = 93
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK + KDP+ PKR SA+ F E R+ + ++P S VGKA G+KWK++S DK
Sbjct: 8 RKVSRKKKDPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKALGDKWKALSAEDK 66
Query: 86 APYVAKAEKRKVEYEKDMKNYNRR 109
PY KAE K YEK+ Y ++
Sbjct: 67 VPYENKAEADKKRYEKEKAEYAKK 90
>gi|296224352|ref|XP_002758030.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390474708|ref|XP_003734829.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 215
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR S FF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRTPSVFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|355754606|gb|EHH58507.1| hypothetical protein EGM_08375 [Macaca fascicularis]
Length = 263
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87
+ K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK P
Sbjct: 85 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQP 143
Query: 88 YVAKAEKRKVEYEK 101
Y KA K K +YEK
Sbjct: 144 YEKKAAKLKEKYEK 157
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|62660600|ref|XP_573625.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|392333089|ref|XP_003752789.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
Length = 209
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K K
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 98 EYEKDMKNY 106
+YEKD+ Y
Sbjct: 154 KYEKDIAAY 162
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S + F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSLYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|389585513|dbj|GAB68243.1| high mobility group protein [Plasmodium cynomolgi strain B]
Length = 107
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFR-EQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
RK K KDP+ PKR SA+ F +E R E +D +K VA VGK GE W + E +
Sbjct: 19 RKRRKNKKDPHAPKRSLSAYMFFAKEKRAEIISRDPDLSKDVATVGKMIGEAWNKLDELE 78
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
KAPY KA++ KV YE++ Y
Sbjct: 79 KAPYEKKAQEDKVRYEREKVEY 100
>gi|344243983|gb|EGW00087.1| High mobility group protein B4 [Cricetulus griseus]
Length = 106
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ + +DP+ P++P S+F +F + Q K D+P N SV V KA G+ W S D
Sbjct: 6 GKRRKRRKRDPHAPRQPPSSFLLFSLDHYAQLKHDNP-NWSVVQVAKATGKMWSMTSNVD 64
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRR 109
K PY KA + +Y +D++NY ++
Sbjct: 65 KQPYEQKAALLRAKYFEDVENYRKQ 89
>gi|203465|gb|AAA40927.1| HMG box (bp. 1168..1428), partial [Rattus norvegicus]
Length = 561
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + K E
Sbjct: 395 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKGE 453
Query: 94 KRKVEYEKDMKNY 106
+ EYE+ MK Y
Sbjct: 454 DARREYEEAMKEY 466
>gi|342319487|gb|EGU11435.1| Non-histone chromosomal protein [Rhodotorula glutinis ATCC 204091]
Length = 142
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP------KNKSVAAVGKAGGEKWKSMSE 82
G+A KDPN PKRP SA+ F ++ R K+++P +S+ +GK G KWK + E
Sbjct: 16 GRAKKDPNAPKRPLSAYMHFSQDQRSVVKEENPDVTFVGHCESIGEIGKILGAKWKELPE 75
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
++ PY KA K YEK+ Y+ P+
Sbjct: 76 DERKPYEEKASADKSRYEKEKAAYDAENPD 105
>gi|301763549|ref|XP_002917185.1| PREDICTED: high mobility group protein B4-like [Ailuropoda
melanoleuca]
Length = 193
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G+K + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++A
Sbjct: 81 VGKKKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKASGKMWSATTDA 139
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
+K PY +A + +Y+++++ Y +++
Sbjct: 140 EKQPYEQRAALLRAKYQEELEIYRKQR 166
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+PK S++ F+ +R ++K+ P + EKW+S+S+ +KA Y A A+
Sbjct: 10 RPKVNVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 96 KVEYEKDMKNY 106
K Y+++M NY
Sbjct: 70 KARYQEEMMNY 80
>gi|302497713|ref|XP_003010856.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
gi|291174401|gb|EFE30216.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
Length = 106
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K R K KDPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+
Sbjct: 9 KTKRGVEKKKKDPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSD 67
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKS 120
+ PY KA K YE + YN + ++ E+S
Sbjct: 68 KQRVPYEEKAATDKQRYEDEKAAYNTNINQSRQDDEES 105
>gi|50304233|ref|XP_452066.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636989|sp|Q6CVH3.1|NHP6_KLULA RecName: Full=Non-histone chromosomal protein 6
gi|49641198|emb|CAH02459.1| KLLA0B12056p [Kluyveromyces lactis]
Length = 93
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+K+ + KDPN PKR SA+ F E R+ + ++P + VG+ GEKWK+++E +K
Sbjct: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENP-GITFGQVGRILGEKWKALNEDEK 64
Query: 86 APYVAKAEKRKVEYEKDMKNY 106
APY AKAE K YE + + Y
Sbjct: 65 APYEAKAEADKKRYESEKELY 85
>gi|20138433|sp|Q9UGV6.1|HMGLX_HUMAN RecName: Full=Putative high mobility group protein 1-like 10;
Short=HMG-1L10
Length = 211
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SAFF+F +R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRTPSAFFLFCSAYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S+ F + RE +KK HP + +++ K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSHAFFGQTCREAHKKKHPDASVNLSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKAHYEREMKTY 78
>gi|413923117|gb|AFW63049.1| putative phototropic-resoponsive NPH3 family protein [Zea mays]
Length = 425
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
+KPKRP SAFFVFM EFR++Y+ HP NKSVAAV
Sbjct: 287 SKPKRPTSAFFVFMSEFRQEYQVQHPGNKSVAAV 320
>gi|291228964|ref|XP_002734447.1| PREDICTED: structure specific recognition protein-like
[Saccoglossus kowalevskii]
Length = 259
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102
+A+F+++ E RE KK P SVA + K GE WK M+E+DK Y A A + K++YE
Sbjct: 80 TAYFLWLNEKRESIKKSLP-GSSVAEISKRAGELWKKMTESDKKKYTALAAEEKIKYEDA 138
Query: 103 MKNYNRRQ 110
MK Y R+Q
Sbjct: 139 MKVYKRKQ 146
>gi|444526057|gb|ELV14266.1| High mobility group protein B1 [Tupaia chinensis]
Length = 166
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP + V K GE W + +K PY KA
Sbjct: 78 KDPNTPKRPPSAFFLFCSEYSPKIKGEHP-GLPIGDVTKKLGEMWNNTGADEKQPYEKKA 136
Query: 93 EKRKVEYEKDMKNYNRR 109
K K +YEKD+ Y R
Sbjct: 137 AKLKEKYEKDIAAYRAR 153
>gi|402077455|gb|EJT72804.1| non-histone chromosomal protein 6 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 101
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KK AK ++ GK KDP PKR SA+ F E RE ++++P S VGK GE+WK
Sbjct: 7 KKGAKTEKRRGK--KDPLAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWK 63
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEE 114
++S+ +APY AKA K YE + YN E+E
Sbjct: 64 ALSDKQRAPYDAKAAADKKRYEDEKAAYNAGGDEDE 99
>gi|392340368|ref|XP_003754052.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392347889|ref|XP_003749961.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK P KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPCEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|427787117|gb|JAA59010.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 208
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K AKDPN PKRP SAFF F + R ++++P + SV V K G +W + + KA Y
Sbjct: 88 KRAKDPNAPKRPLSAFFWFCNDERPNVRQENP-DSSVGEVAKELGRRWNEVGDDVKAKYE 146
Query: 90 AKAEKRKVEYEKDMKNYNRRQP 111
A K K YEK++K Y ++P
Sbjct: 147 GLAAKDKARYEKELKAYKGKKP 168
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
+KP+ SA+ F++ RE++KK HP +N A K E+WK+MS+ +K + A+K
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPNENVVFAEFSKKCAERWKTMSDGEKKRFHQMADK 64
Query: 95 RKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSGEVFFWGCFD 144
K ++ +M +Y +P + ++S+K + S FFW C D
Sbjct: 65 DKKRFDTEMADY---KPPKGDKSKKRKRAKDPNAPKRPLS--AFFWFCND 109
>gi|281349442|gb|EFB25026.1| hypothetical protein PANDA_005395 [Ailuropoda melanoleuca]
Length = 181
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G+K + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++A
Sbjct: 79 VGKKKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKASGKMWSATTDA 137
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
+K PY +A + +Y+++++ Y +++
Sbjct: 138 EKQPYEQRAALLRAKYQEELEIYRKQR 164
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+PK S++ F+ +R ++K+ P + EKW+S+S+ +KA Y A A+
Sbjct: 8 RPKVNVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 96 KVEYEKDMKNY 106
K Y+++M NY
Sbjct: 68 KARYQEEMMNY 78
>gi|444722397|gb|ELW63094.1| High mobility group protein B1 [Tupaia chinensis]
Length = 178
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K + P S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGE-PPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 149 AKLKEKYDKDIAAY 162
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DP KP+ S++ F++ +E++KK HP + + K E+WK+MS +K +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCQEEHKK-HPDASVNNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ K YE++MK Y
Sbjct: 64 AKADKAPYEREMKTY 78
>gi|400599237|gb|EJP66941.1| HMG box protein [Beauveria bassiana ARSEF 2860]
Length = 96
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+ + PY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSDKQRTPYE 76
Query: 90 AKAEKRKVEYEKDMKNYN 107
AKA K YE + YN
Sbjct: 77 AKAAADKKRYEDEKAAYN 94
>gi|255725950|ref|XP_002547901.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133825|gb|EER33380.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 358
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
A+DP+ PKRP +A+ +F E +E+ K P + + + ++ E W+++SE D+ PY
Sbjct: 144 ARDPDLPKRPTNAYLIFCELEKERIKSGDP---NASDISRSMTEAWRNLSEEDRRPYFKL 200
Query: 92 AEKRKVEYEKDMKNYNRR 109
E+ ++ Y+++M Y++R
Sbjct: 201 YEEDRIRYQREMTEYHQR 218
>gi|354476918|ref|XP_003500670.1| PREDICTED: high mobility group protein B4-like [Cricetulus griseus]
Length = 180
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ + +DP+ P++P S+F +F + Q K D+P N SV V KA G+ W S D
Sbjct: 80 GKRRKRRKRDPHAPRQPPSSFLLFSLDHYAQLKHDNP-NWSVVQVAKATGKMWSMTSNVD 138
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRR 109
K PY KA + +Y +D++NY ++
Sbjct: 139 KQPYEQKAALLRAKYFEDVENYRKQ 163
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+PK S++ FM +R ++K+ P + EKW+S+S+ +KA Y A A+
Sbjct: 8 RPKVNVSSYIHFMLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 96 KVEYEKDMKNY 106
K Y+++M NY
Sbjct: 68 KARYQEEMMNY 78
>gi|167536391|ref|XP_001749867.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771582|gb|EDQ85246.1| predicted protein [Monosiga brevicollis MX1]
Length = 197
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
V++ P + + +A KDPNKPK SA+ F ++ R Q+ KD+P +K + V K G
Sbjct: 17 VHEAPRQKRPRQKRAKKDPNKPKNAQSAYMFFSQKVRPQFSKDNP-DKKMTDVSKLIGAA 75
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+ MS+A K PY A + K Y+ M Y
Sbjct: 76 WREMSDAAKKPYEEMARRDKQRYQHQMATY 105
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + K GK KDP+ PK+P +A+F++ + R + + +N +VA + K G +WK +
Sbjct: 109 PTRELGKRGKRRKDPDAPKKPLTAYFLYAADRRAALRAQN-RNATVADIAKIIGAEWKDL 167
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+A K PY +A++ K +Y+K+++ Y
Sbjct: 168 SDAVKKPYQDRADRLKSQYQKEVELY 193
>gi|444726214|gb|ELW66754.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAF +F E+R + K +HP + V K GE W + + K PY
Sbjct: 36 KKVKDPNAPKRPPSAFLLFCSEYRPKIKGEHP-GLFIGDVAKKLGEMWNNTAAGGKQPYE 94
Query: 90 AKAEKRKVEYEKDMKNY 106
KA K K +YEKD+ Y
Sbjct: 95 KKAAKLKEKYEKDIAAY 111
>gi|307191139|gb|EFN74837.1| High mobility group protein DSP1 [Camponotus floridanus]
Length = 205
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+++P + R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W
Sbjct: 103 HEEPERPTRRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPE-MGVGDIAKELGKLW 161
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR----QPEE 113
S K+ Y+A AE+ + YE+++ YN+R PEE
Sbjct: 162 MSTDLQTKSKYMAIAEEDRARYEREIIAYNKRVKNYDPEE 201
>gi|384496847|gb|EIE87338.1| hypothetical protein RO3G_12049 [Rhizopus delemar RA 99-880]
Length = 157
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR S++ ++ + R + +HP K++ + K GE W +SE +K PYV +A+
Sbjct: 42 DPNAPKRNLSSYMLYTQAVRPKVVAEHPDMKAIE-IAKFVGEMWNKLSEKEKMPYVKQAQ 100
Query: 94 KRKVEYEKDMKNY 106
K KV +EK+ +Y
Sbjct: 101 KEKVRFEKENASY 113
>gi|346324407|gb|EGX94004.1| nucleosome binding protein [Cordyceps militaris CM01]
Length = 96
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E R+ ++++P S VGK GE+WK++SE + PY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRDNVREENP-GVSFGQVGKILGERWKALSEKQRVPYE 76
Query: 90 AKAEKRKVEYEKDMKNYN 107
AKA K YE + YN
Sbjct: 77 AKAAADKKRYEDEKAAYN 94
>gi|297297620|ref|XP_001106417.2| PREDICTED: high mobility group protein B2-like [Macaca mulatta]
Length = 210
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSTGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +Y+KD+ Y
Sbjct: 152 KEKYQKDIAAY 162
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP++ + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPESSVNFAEFSKKCSERWKTMSAKEKSKFEGMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV Y+++MKNY
Sbjct: 65 KSDKVCYDREMKNY 78
>gi|351715817|gb|EHB18736.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 165
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ Q K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFYSEYCPQIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKD 102
K K +YEK+
Sbjct: 149 AKLKEKYEKE 158
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S + F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSLYAFFVQTCREEHKKKHPDASINFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|426392256|ref|XP_004062472.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Gorilla gorilla gorilla]
Length = 198
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDP+ PKRP SAFF+F E+ + K +HP S+ V K GE W + DK PY KA
Sbjct: 77 KDPSAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVVKKLGEMWNDTAADDKQPYEKKA 135
Query: 93 EKRKVEYEKDMKNYNRR 109
K K +YEKD+ Y +
Sbjct: 136 AKLKEKYEKDIAAYQAK 152
>gi|409079498|gb|EKM79859.1| hypothetical protein AGABI1DRAFT_57086 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 547
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA---GGEKWKS 79
KAG+ KDPN PK+P SA+F+F++ R K H K KW+S
Sbjct: 413 KAGKSRKSNIKDPNAPKKPLSAYFMFLQRIRANPKLVHDIFGDETETTKQSVLAAAKWRS 472
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP 111
M++A++ P++A+AE+ K+EYE + Y P
Sbjct: 473 MTDAERQPFLAQAEQEKMEYEAARRIYEEGAP 504
>gi|449685055|ref|XP_002156373.2| PREDICTED: high mobility group protein homolog TDP-1-like, partial
[Hydra magnipapillata]
Length = 218
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYK-KDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
K KDPNKPKR +A+F F+ +FREQ K K + + + A+ GEKW+SM++ +K Y
Sbjct: 98 KMGKDPNKPKRCQTAYFFFLHDFREQMKGKALLEGEKIPAL---AGEKWRSMTDDEKKVY 154
Query: 89 VAKAEKRKVEYEKDMKNYNRRQPEEEEES 117
+K K YEK M+ + + P++ ++S
Sbjct: 155 NDMVQKDKQRYEKAMEEWKSKNPDQPKKS 183
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
K+P SA+ F+ ++R KK V V K G W +M E +KAPY K K
Sbjct: 28 KKPTSAYIYFVSDYRLVLKKKGKATNKVNEVAKMCGTAWNAMKENEKAPYYEKYNIDKAR 87
Query: 99 YEKD 102
Y K+
Sbjct: 88 YLKE 91
>gi|344300446|gb|EGW30767.1| Non-histone chromosomal protein 6 [Spathaspora passalidarum NRRL
Y-27907]
Length = 93
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK+ + KDP+ PKR SA+ F E R+ + ++P S VGK GEKWK+++ +K
Sbjct: 8 RKATRKKKDPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALTADEK 66
Query: 86 APYVAKAEKRKVEYEKDMKNYNRR 109
PY KAE K YEK+ Y +R
Sbjct: 67 VPYENKAETDKKRYEKEKAEYAKR 90
>gi|296202119|ref|XP_002748265.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390463329|ref|XP_003733013.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK Y KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEIWNNTAADDKQHYEKKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+K+MK Y
Sbjct: 65 KADKARYKKEMKTY 78
>gi|225703820|gb|ACO07756.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 193
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN KRP SAFF+F +FR + K +HP S+ K G W S + +K PY KA
Sbjct: 89 KDPNALKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNSSAAEEKKPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K +Y+KD+ +Y
Sbjct: 148 ATLKEKYDKDIASY 161
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ R ++KK P+ + + A K E+WK MS +K +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKQPEASVNFAEFSKKCSERWKPMSPKEKGTFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|348525338|ref|XP_003450179.1| PREDICTED: high mobility group-T protein-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F +FR + K ++P S+ K GE W
Sbjct: 76 NYVPPKGQKK--KRFKDPNAPKRPPSAFFLFCADFRPKIKSEYP-GLSIGDTAKKLGEMW 132
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S S +K PY KA K K +Y+KD+ Y
Sbjct: 133 NSSSAEEKQPYEKKAAKLKEKYDKDIVAY 161
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K +
Sbjct: 2 VKDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSPKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A++ K+ YE++MKNY
Sbjct: 62 MAKQDKLRYEREMKNY 77
>gi|410955200|ref|XP_003984245.1| PREDICTED: high mobility group protein B2-like [Felis catus]
Length = 329
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP + + K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLPIGDIAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +Y KD+ Y
Sbjct: 152 KEKYGKDIAAY 162
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP+KP+ S++ F++ RE++KK HP + + A K E+WK+MSE +K+ + A
Sbjct: 5 DPSKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSEKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKN 105
+ K Y+++MKN
Sbjct: 65 KSDKARYDREMKN 77
>gi|299748049|ref|XP_001837422.2| hypothetical protein CC1G_01334 [Coprinopsis cinerea okayama7#130]
gi|298407795|gb|EAU84338.2| hypothetical protein CC1G_01334 [Coprinopsis cinerea okayama7#130]
Length = 558
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFREQYK--------KDHPKNKSVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ R K + +SV A K
Sbjct: 423 AQRKAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRADPKLVKEIFGDETETTKQSVLAAAK 482
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++A++ P++A+AE+ K+EYE + Y
Sbjct: 483 -----WRSMTDAERQPFLAQAEQEKMEYEAARRLY 512
>gi|157832121|pdb|1NHM|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
gi|157832122|pdb|1NHN|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
Length = 81
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA K
Sbjct: 3 NAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 61
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 62 KEKYEKDIAAY 72
>gi|410966739|ref|XP_003989887.1| PREDICTED: high mobility group protein B4 [Felis catus]
Length = 193
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G+K + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + + A+
Sbjct: 82 GKKKKRRKRDPYAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKASGKMWSATTGAE 140
Query: 85 KAPYVAKAEKRKVEYEKDMKNY--NRRQPEEEEESEKSMSEVNDEDDDEEGS 134
K PY +A + +Y++D++ Y R+ + + S K+ E D +GS
Sbjct: 141 KQPYEQRAALLRAKYQEDLEIYRKQRKANKGHQRSAKNQRRGKMESDKADGS 192
Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+PK S++ F+ +R ++K+ P S + EKW+S+S+ +KA Y A A+
Sbjct: 10 RPKANVSSYIHFLLNYRNKFKEQQPNTYLSFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 96 KVEYEKDMKNY 106
K Y+++M NY
Sbjct: 70 KARYQEEMMNY 80
>gi|401626897|gb|EJS44815.1| nhp6bp [Saccharomyces arboricola H-6]
Length = 99
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GE+WK
Sbjct: 8 KQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANETRDIVRSENP-DVTFGQVGRILGERWK 66
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
+++ +K PY +KA+ K YE + + YN
Sbjct: 67 ALTAEEKVPYESKAQADKKRYESEKELYN 95
>gi|183014156|dbj|BAG24407.1| hypothetical protein [Coprinopsis cinerea]
Length = 558
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFREQYK--------KDHPKNKSVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ R K + +SV A K
Sbjct: 423 AQRKAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRADPKLVKEIFGDETETTKQSVLAAAK 482
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++A++ P++A+AE+ K+EYE + Y
Sbjct: 483 -----WRSMTDAERQPFLAQAEQEKMEYEAARRLY 512
>gi|158300246|ref|XP_320213.4| AGAP012335-PA [Anopheles gambiae str. PEST]
gi|157013066|gb|EAA00360.4| AGAP012335-PA [Anopheles gambiae str. PEST]
Length = 728
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP++AF +FM REQ KKD P S+ + K GGE WK + DK + AKA
Sbjct: 563 DPNAPKRPSTAFMLFMNASREQIKKDFP-GLSITEMSKKGGELWKELK--DKKEWEAKAA 619
Query: 94 KRKVEYEKDM 103
K K +Y + M
Sbjct: 620 KAKDDYTEAM 629
>gi|221059780|ref|XP_002260535.1| High mobility group protein [Plasmodium knowlesi strain H]
gi|193810609|emb|CAQ42507.1| High mobility group protein, putative [Plasmodium knowlesi strain
H]
Length = 104
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFR-EQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
RK K KDP+ PKR SA+ F +E R E +D +K VA VGK GE W + E +
Sbjct: 16 RKRRKNKKDPHAPKRSLSAYMFFAKEKRAEIISRDPDLSKDVATVGKMIGEAWNKLDERE 75
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
KAPY KA++ KV YE++ Y
Sbjct: 76 KAPYEKKAQEDKVRYEREKVEY 97
>gi|58268918|ref|XP_571615.1| nonhistone protein 6 [Cryptococcus neoformans var. neoformans
JEC21]
gi|134112618|ref|XP_774852.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818300|sp|P0CO25.1|NHP6_CRYNB RecName: Full=Non-histone chromosomal protein 6
gi|338818301|sp|P0CO24.1|NHP6_CRYNJ RecName: Full=Non-histone chromosomal protein 6
gi|50257500|gb|EAL20205.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227850|gb|AAW44308.1| nonhistone protein 6, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 116
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+ KDPNKPKR SA+ F++++RE+ K ++P+ + VGK G KW+ M+E +K PY
Sbjct: 20 RTKKDPNKPKRALSAYMFFVQDYRERIKTENPE-ATFGDVGKLLGIKWREMNENEKKPYE 78
Query: 90 AKA 92
AKA
Sbjct: 79 AKA 81
>gi|71019847|ref|XP_760154.1| hypothetical protein UM04007.1 [Ustilago maydis 521]
gi|46099871|gb|EAK85104.1| hypothetical protein UM04007.1 [Ustilago maydis 521]
Length = 286
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K G K +DP KPKRP SAFF F+ + R ++ K GGE+WK MS
Sbjct: 199 KKGIKGTAFLRDPAKPKRPNSAFFEFLNDLRA----SEAVIPNITEFSKRGGERWKQMSA 254
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYN-RRQPE 112
KAPY +A + +Y++D++ YN R PE
Sbjct: 255 EQKAPYEQRALQALEQYKRDLELYNSTRGPE 285
>gi|355766483|gb|EHH62519.1| hypothetical protein EGM_20887 [Macaca fascicularis]
Length = 198
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D N PKRP S FF+F +F + K +P S+ + K GE WK++++++K PY+ KA
Sbjct: 76 DSNAPKRPPSGFFLFSSKFCPKMKSTNP-GISIGDMVKKLGEMWKNLNDSEKQPYITKAA 134
Query: 94 KRKVEYEKDM 103
K K +YEKD+
Sbjct: 135 KLKDKYEKDV 144
>gi|347441690|emb|CCD34611.1| similar to transcription factor HMG [Botryotinia fuckeliana]
Length = 101
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E + PY A
Sbjct: 20 DPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNEKQRGPYEESAA 78
Query: 94 KRKVEYEKDMKNYNRRQPEEE 114
K K YE++ NYN EEE
Sbjct: 79 KDKKRYEEEKANYNADAEEEE 99
>gi|148684659|gb|EDL16606.1| mCG50402 [Mus musculus]
Length = 214
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F + + K +HP + S+ V K GE W + + DK PY KA
Sbjct: 89 KDPNAPKRPPSAFFLFYSVYYPKIKGEHP-DLSIGDVAKKLGEMWNNAAADDKQPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 148 AKLKEKYEKDIAAY 161
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ FM+ R+++KK HP + + + K E+WK+MS +K + A
Sbjct: 3 DPKKPRGKMSSYAFFMQTCRKEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 62
Query: 93 EKRKVEYEKDMKNY 106
+ K Y++ +K Y
Sbjct: 63 KADKARYKRKIKTY 76
>gi|395830755|ref|XP_003788484.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 135
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN P RP SAFF+F E+ + K +HP S+ V K GE W + DK PY KA
Sbjct: 16 KDPNAPNRPPSAFFLFCSEYHPEIKGEHP-GLSIGDVAKKLGEMWNYTAVDDKQPYEKKA 74
Query: 93 EKRKVEYEKDM 103
K K +YEKD+
Sbjct: 75 AKLKEKYEKDI 85
>gi|444730059|gb|ELW70455.1| High mobility group protein B1 [Tupaia chinensis]
gi|444730060|gb|ELW70456.1| High mobility group protein B1 [Tupaia chinensis]
Length = 177
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF F E+ + K +HP S+ V K GE W + + DK PY KA
Sbjct: 57 KDPNAPKRPPLAFFFFCSEYCPKIKGEHP-GLSIGDVAKKLGEMWNNTAAGDKQPYEKKA 115
Query: 93 EKRKVEYEKDMKNY 106
K K +YE+D+ Y
Sbjct: 116 AKLKEKYERDIAAY 129
>gi|426192550|gb|EKV42486.1| putative HMG1 protein [Agaricus bisporus var. bisporus H97]
Length = 547
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA---GGEKWKS 79
KAG+ KDPN PK+P SA+F+F++ R K H K KW+S
Sbjct: 413 KAGKSRKSNIKDPNAPKKPLSAYFMFLQRIRANPKLVHDIFGDETETTKQSVLAAAKWRS 472
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP 111
M++A++ P++A+AE+ K+EYE + Y P
Sbjct: 473 MTDAERQPFLAQAEQEKMEYEAARRIYEEGAP 504
>gi|363755760|ref|XP_003648095.1| hypothetical protein Ecym_7459 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892131|gb|AET41278.1| hypothetical protein Ecym_7459 [Eremothecium cymbalariae
DBVPG#7215]
Length = 94
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P S VG+ GEKWK++S+ +K PY AKAE
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENP-GISFGQVGRVLGEKWKALSDDEKQPYEAKAE 75
Query: 94 KRKVEYEKDMKNYN 107
K YE + + YN
Sbjct: 76 ADKKRYESEKELYN 89
>gi|322797845|gb|EFZ19753.1| hypothetical protein SINV_15148 [Solenopsis invicta]
Length = 220
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W S
Sbjct: 121 PERPTRRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPE-MGVGDIAKELGKLWMST 179
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRR----QPEE 113
K+ Y+A AE+ + YE+++ YN+R PEE
Sbjct: 180 DLQTKSKYMAIAEEDRARYEREIIAYNKRVKNYDPEE 216
>gi|440631791|gb|ELR01710.1| non-histone chromosomal protein 6 [Geomyces destructans 20631-21]
Length = 101
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKR SA+ F +E R+ ++++P S VGK GE+WK++++ + PY
Sbjct: 17 KKKKDPNAPKRGLSAYMFFAQEQRDNVREENP-GISFGQVGKVLGERWKALNDKQRTPYE 75
Query: 90 AKAEKRKVEYEKDMKNYN 107
KA++ K YE + +YN
Sbjct: 76 TKAQEDKKRYEDEKASYN 93
>gi|343425092|emb|CBQ68629.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 290
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K G K +DP KPKRP SAFF F+ + R ++ K GGE+WK MS
Sbjct: 203 KKGIKGTAFLRDPAKPKRPNSAFFEFLNDLR----ASEAVIPNITEFSKRGGERWKQMSA 258
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYN-RRQPE 112
KAPY +A + +Y++D++ YN R PE
Sbjct: 259 EQKAPYEQRALQALEQYKRDLEIYNSTRGPE 289
>gi|389744542|gb|EIM85725.1| hypothetical protein STEHIDRAFT_81292 [Stereum hirsutum FP-91666
SS1]
Length = 581
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFREQY--------KKDHPKNKSVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ R ++ +SV A GK
Sbjct: 411 AQRKAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRSDPALVQDVFGEETETTKQSVLAAGK 470
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++ +K P++A+AE+ K+EYE K Y
Sbjct: 471 -----WRSMTDDEKRPFLAQAEQEKLEYESARKRY 500
>gi|45187563|ref|NP_983786.1| ADL310Wp [Ashbya gossypii ATCC 10895]
gi|74694642|sp|Q75B82.1|NHP6_ASHGO RecName: Full=Non-histone chromosomal protein 6
gi|44982301|gb|AAS51610.1| ADL310Wp [Ashbya gossypii ATCC 10895]
gi|374106998|gb|AEY95906.1| FADL310Wp [Ashbya gossypii FDAG1]
Length = 94
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P S VG+ GEKWK++S+ +K PY AKAE
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENP-GISFGQVGRVLGEKWKALSDDEKQPYEAKAE 75
Query: 94 KRKVEYEKDMKNYN 107
K YE + + YN
Sbjct: 76 ADKKRYESEKELYN 89
>gi|409043132|gb|EKM52615.1| hypothetical protein PHACADRAFT_164552 [Phanerochaete carnosa
HHB-10118-sp]
Length = 115
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KD N PKR SA+ F +++RE+ K ++P + S +GK G KWK + E +K PY+
Sbjct: 22 KTKKDKNAPKRALSAYMFFSQDWRERVKAENP-DASFGELGKLLGTKWKELDEEEKKPYI 80
Query: 90 AKAEKRKVEYEKDMKNYN 107
+AE+ K E++ K+Y+
Sbjct: 81 EQAERDKARAEREKKDYD 98
>gi|444721179|gb|ELW61931.1| High mobility group protein B1 [Tupaia chinensis]
Length = 212
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ + K GE W + + K PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSMGDIAKKLGELWNNTAADGKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEK++ Y
Sbjct: 149 AKLKEKYEKNIAAY 162
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+P KP+ S++ F++ RE+ KK HP + + + K E+ K+MS +K + A
Sbjct: 5 EPKKPRGKMSSYAFFVQTCREEPKKKHPDASVNFSEFSKTCSERGKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KVDKAGYEREMKTY 78
>gi|205780950|sp|B2RPK0.1|HGB1A_HUMAN RecName: Full=Putative high mobility group protein B1-like 1;
AltName: Full=High mobility group protein B1 pseudogene
1; AltName: Full=Putative high mobility group protein
1-like 1; Short=HMG-1L1
gi|187950665|gb|AAI37483.1| High-mobility group box 1-like 1 [Homo sapiens]
gi|187953577|gb|AAI37484.1| High-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK P KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPGEKKA 148
Query: 93 EKRKVEYEKDMKNYN 107
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAYQ 163
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK H + + + E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE+ MK Y
Sbjct: 65 KADKTHYERQMKTY 78
>gi|443684506|gb|ELT88434.1| hypothetical protein CAPTEDRAFT_172235 [Capitella teleta]
Length = 734
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP SA+F+++ E RE+ K ++P + V + K G++WK ++ DK + A
Sbjct: 546 DPNKPKRPQSAYFLWLNEMREEIKAENP-DAGVTDIAKLAGQRWKEVT--DKTRWEGLAV 602
Query: 94 KRKVEYEKDMKNYNRRQPEEEEESE 118
K K YEK M+ Y + + + + E
Sbjct: 603 KAKESYEKAMEEYLANKSDSDSDGE 627
>gi|159476440|ref|XP_001696319.1| high mobility group protein [Chlamydomonas reinhardtii]
gi|158282544|gb|EDP08296.1| high mobility group protein [Chlamydomonas reinhardtii]
Length = 179
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PK+P ++F F RE K ++P + VGK GEKWK +S DK Y KA
Sbjct: 57 DPNAPKKPLTSFMYFSNAIRESVKSENP-GIAFGEVGKVIGEKWKGLSADDKKEYDEKAA 115
Query: 94 KRKVEYEKDMKNYN 107
K K Y+K+M++Y
Sbjct: 116 KDKERYQKEMESYG 129
>gi|38047781|gb|AAR09793.1| similar to Drosophila melanogaster HmgZ, partial [Drosophila
yakuba]
Length = 104
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+ + DK + KA K
Sbjct: 4 DRPKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKTEWEQKAIKM 60
Query: 96 KVEYEKDMKNY 106
K EY K +K Y
Sbjct: 61 KEEYNKAVKEY 71
>gi|19114226|ref|NP_593314.1| High-mobility group non-histone chromatin protein (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74627097|sp|P87057.1|NHP6_SCHPO RecName: Full=Non-histone chromosomal protein 6
gi|2058376|emb|CAB08172.1| High-mobility group non-histone chromatin protein (predicted)
[Schizosaccharomyces pombe]
Length = 108
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
AK+ RK KDPN PKR SAF F E RE+ K D+P + + +G G++WK ++
Sbjct: 5 AKSSRK-----KDPNTPKRNMSAFMFFSIENREKMKTDNP-DATFGQLGSLLGKRWKELT 58
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNYN 107
++ PY KA + K YE++ K Y+
Sbjct: 59 STEREPYEEKARQDKERYERERKEYD 84
>gi|164661201|ref|XP_001731723.1| hypothetical protein MGL_0991 [Malassezia globosa CBS 7966]
gi|159105624|gb|EDP44509.1| hypothetical protein MGL_0991 [Malassezia globosa CBS 7966]
Length = 97
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 44/83 (53%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G + KA KDP PKRP SA+ F +++R+ K SV VG+ G KWK MS+
Sbjct: 11 TGTRRTKAKKDPAAPKRPLSAYMFFSQDWRDASKPRTLTQDSVCDVGRLLGTKWKEMSDE 70
Query: 84 DKAPYVAKAEKRKVEYEKDMKNY 106
+K PYV A K K E + Y
Sbjct: 71 EKKPYVEMASKDKERAESEKAAY 93
>gi|444722479|gb|ELW63171.1| High mobility group protein B2 [Tupaia chinensis]
Length = 147
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKRP SAFF+F E + K +HP S+ K GE W S DK P KA K
Sbjct: 30 PNTPKRPPSAFFLFCSEHLPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPCEQKAAK 88
Query: 95 RKVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 89 LKEKYEKDIAAY 100
>gi|68063985|ref|XP_673987.1| high mobility group protein [Plasmodium berghei strain ANKA]
gi|56492229|emb|CAH99818.1| high mobility group protein, putative [Plasmodium berghei]
Length = 96
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFR-EQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
+K K KDP+ PKR SA+ F +E R E +D +K VA VGK GE W + E +
Sbjct: 9 KKRRKNKKDPHAPKRSLSAYMFFAKEKRAEIITRDPSLSKDVATVGKMIGEAWNKLDERE 68
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
KAPY KA++ K+ YEK+ Y
Sbjct: 69 KAPYEKKAQEDKIRYEKEKMEY 90
>gi|82594869|ref|XP_725606.1| high mobility group protein [Plasmodium yoelii yoelii 17XNL]
gi|23480678|gb|EAA17171.1| high mobility group protein [Plasmodium yoelii yoelii]
Length = 105
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFR-EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
K KDP+ PKR SA+ F +E R E +D +K VA VGK GE W + E +KAPY
Sbjct: 22 KNXKDPHAPKRSLSAYMFFAKEKRAEIITRDPSLSKDVATVGKMIGEAWNKLDEREKAPY 81
Query: 89 VAKAEKRKVEYEKDMKNY 106
KA++ K+ YEK+ Y
Sbjct: 82 EKKAQEDKIRYEKEKMEY 99
>gi|335308835|ref|XP_003361389.1| PREDICTED: high mobility group protein B4-like [Sus scrofa]
Length = 198
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G K + +DP P+RP S+F +F ++ Q K+++P N SVA V KA W + ++
Sbjct: 81 VGGKRKRRKRDPQAPRRPPSSFLLFCQDNYAQLKRENP-NWSVAQVAKASARMWSTTTDV 139
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRR 109
DK PY +A + +Y +++ Y ++
Sbjct: 140 DKQPYEQRAALLRAKYHEELSVYQKQ 165
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
KPK S++ F+ + ++K+ P + EKW+S+S+ +KA Y A A+
Sbjct: 10 KPKANVSSYIHFLLNYSNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 96 KVEYEKDMKNY 106
K Y+++M+NY
Sbjct: 70 KARYQEEMRNY 80
>gi|384491850|gb|EIE83046.1| hypothetical protein RO3G_07751 [Rhizopus delemar RA 99-880]
Length = 101
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+K+ ++ KDP+ PKR SA+ F ++ R K+++PK S +GK GE+WK++SE +K
Sbjct: 21 KKARRSKKDPSAPKRGLSAYMFFSQDQRPTVKEENPKA-SFGEIGKILGERWKALSEEEK 79
Query: 86 APYVAKAEKRKVEYE 100
PY+ KAE K YE
Sbjct: 80 KPYLKKAEDDKKRYE 94
>gi|444729825|gb|ELW70228.1| High mobility group protein B1 [Tupaia chinensis]
Length = 141
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDP+ PKRP SAFF+F E+R + K + P + + V K GE W + + K PY A
Sbjct: 28 KDPSAPKRPPSAFFLFCSEYRPEIKGERP-GRFIGDVAKRLGEMWNNTAADGKQPYEKNA 86
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 87 AKLKGKYEKDIAAY 100
>gi|405121060|gb|AFR95829.1| nonhistone protein 6 [Cryptococcus neoformans var. grubii H99]
Length = 116
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPNKPKR SA+ F++++RE+ K ++P+ + VGK G KW+ M+E +K PY AKA
Sbjct: 23 KDPNKPKRALSAYMFFVQDYRERIKAENPE-ATFGDVGKLLGIKWREMNENEKKPYEAKA 81
>gi|392568491|gb|EIW61665.1| hypothetical protein TRAVEDRAFT_115835 [Trametes versicolor
FP-101664 SS1]
Length = 585
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR-------EQYKKDHPKNK-SVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ R E + + K SV A GK
Sbjct: 432 AQRKAGKSRKGNLKDPNAPKKPLSAYFMFLQRIRSDPELVQEVFGDETETTKQSVLAAGK 491
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++ + P++A+AE+ K+EYE K Y
Sbjct: 492 -----WRSMTDEQRKPFLAQAEQEKLEYESARKMY 521
>gi|170591488|ref|XP_001900502.1| High mobility group protein 1.2 [Brugia malayi]
gi|158592114|gb|EDP30716.1| High mobility group protein 1.2, putative [Brugia malayi]
Length = 235
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
A RK + KDPN PKR SAFF F + R + ++ HP+ K V V + G WK++ E
Sbjct: 101 ALRKRKRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRFWKALGEE 159
Query: 84 DKAPYVAKAEKRKVEYEKDMKNY 106
++A Y KA + K Y ++M+NY
Sbjct: 160 ERAVYERKALEDKERYAEEMRNY 182
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEAD 84
R+ ++AK P + K FFV M E++KK +P +N V + K EKWK+MS+ +
Sbjct: 17 RRMRESAKPPVRGKTSPYGFFVKM--CYEEHKKKYPNENVQVTEISKKCSEKWKTMSDDE 74
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K + A+K Y+ ++ Y
Sbjct: 75 KRRFFELAQKDAERYQAEVAAY 96
>gi|24657271|ref|NP_726106.1| HMG protein Z, isoform A [Drosophila melanogaster]
gi|24657274|ref|NP_726107.1| HMG protein Z, isoform B [Drosophila melanogaster]
gi|194882002|ref|XP_001975102.1| GG20749 [Drosophila erecta]
gi|195346531|ref|XP_002039811.1| GM15692 [Drosophila sechellia]
gi|195486382|ref|XP_002091485.1| HmgZ [Drosophila yakuba]
gi|195585528|ref|XP_002082533.1| GD25171 [Drosophila simulans]
gi|729741|sp|Q06943.1|HMGZ_DROME RecName: Full=High mobility group protein Z; Short=HMG-Z
gi|296945|emb|CAA50469.1| Hmg-Z protein [Drosophila melanogaster]
gi|7291329|gb|AAF46758.1| HMG protein Z, isoform A [Drosophila melanogaster]
gi|21064429|gb|AAM29444.1| RE28596p [Drosophila melanogaster]
gi|21645314|gb|AAM70934.1| HMG protein Z, isoform B [Drosophila melanogaster]
gi|190658289|gb|EDV55502.1| GG20749 [Drosophila erecta]
gi|194135160|gb|EDW56676.1| GM15692 [Drosophila sechellia]
gi|194177586|gb|EDW91197.1| HmgZ [Drosophila yakuba]
gi|194194542|gb|EDX08118.1| GD25171 [Drosophila simulans]
gi|220948296|gb|ACL86691.1| HmgZ-PA [synthetic construct]
Length = 111
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
++PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+ + DK + KA K
Sbjct: 4 DRPKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKTEWEQKAIKM 60
Query: 96 KVEYEKDMKNY 106
K EY K +K Y
Sbjct: 61 KEEYNKAVKEY 71
>gi|410928771|ref|XP_003977773.1| PREDICTED: TOX high mobility group box family member 4-B-like
[Takifugu rubripes]
Length = 684
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 2 KGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP 61
+GG +S A LSV P G K G+ KDPN+P++P SA+ +F + + K +P
Sbjct: 269 RGGAKQS----APLSV---PGVVGNKKGRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNP 321
Query: 62 KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
+ S V K W S++E K Y K E K EY K + Y Q
Sbjct: 322 -SASFGEVSKIVASMWDSLAEEQKQVYKRKTEAAKKEYLKALAAYKANQ 369
>gi|17537205|ref|NP_496970.1| Protein HMG-1.1 [Caenorhabditis elegans]
gi|3702826|gb|AAC78598.1| high mobility group protein 1.1 [Caenorhabditis elegans]
gi|15718335|emb|CAB54448.2| Protein HMG-1.1 [Caenorhabditis elegans]
Length = 95
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K +K GKA KDPN PKR SAFF +M+E RE+ KK VA V KA G +W +
Sbjct: 12 PVKRVKKGGKA-KDPNAPKRAMSAFFFWMQENRERIKKP---GMGVADVAKAAGVEWGKL 67
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
+ DK+ + KA K YE D+ NY + Q
Sbjct: 68 T--DKSRWEKKAADDKKRYEVDIANYKKSQ 95
>gi|50548527|ref|XP_501733.1| YALI0C11671p [Yarrowia lipolytica]
gi|74635076|sp|Q6CC79.1|NHP6_YARLI RecName: Full=Non-histone chromosomal protein 6
gi|49647600|emb|CAG82043.1| YALI0C11671p [Yarrowia lipolytica CLIB122]
Length = 103
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F + R+ + D+P + VGKA GEKWK++++A+K PY KA
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRADNP-GIAFGQVGKALGEKWKTLTDAEKVPYEEKAT 79
Query: 94 KRKVEYEKDMKNYNRRQPEEEEE 116
K YE + Y E +EE
Sbjct: 80 ADKKRYEDEKAAYKANAAEFDEE 102
>gi|110287688|sp|Q4PBZ9.2|NHP6_USTMA RecName: Full=Non-histone chromosomal protein 6
Length = 99
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+++ KA KDP+ PKRP SA+ F ++ RE+ K +P+ VG+ G KWK MSEA+K
Sbjct: 16 KRTTKAKKDPDAPKRPLSAYMFFSQDQRERVKNANPE-AGFGEVGRLLGAKWKEMSEAEK 74
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQ 110
PY A + K E + YN+R+
Sbjct: 75 KPYNDMANRDKARAEAEKAAYNKRR 99
>gi|156101624|ref|XP_001616505.1| high mobility group protein [Plasmodium vivax Sal-1]
gi|148805379|gb|EDL46778.1| high mobility group protein, putative [Plasmodium vivax]
Length = 107
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFR-EQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
RK K KDP+ PKR SA+ F +E R E +D +K VA VGK GE W + E +
Sbjct: 19 RKRRKNKKDPHAPKRSLSAYMFFAKEKRAEIISRDPDLSKDVATVGKMIGEAWNKLDERE 78
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
KAPY KA++ K+ YE++ Y
Sbjct: 79 KAPYEKKAQEDKLRYEREKVEY 100
>gi|72051831|ref|XP_792040.1| PREDICTED: high mobility group protein 1 homolog
[Strongylocentrotus purpuratus]
gi|115767180|ref|XP_001176807.1| PREDICTED: high mobility group protein 1 homolog
[Strongylocentrotus purpuratus]
Length = 204
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
+ +K AK GR+ +A KDP+ PKR SAFF+F + R K++H K+ SV + +A
Sbjct: 79 MKEKNAKGGRR--RAKKDPDAPKRNLSAFFLFSRDERGAIKQEH-KDWSVGKIAQALAAI 135
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEK 119
WK+++ ADKA Y A+A K Y ++M + +P++ ++ ++
Sbjct: 136 WKTITPADKAKYDAEAALEKQRYMREMAAFKESKPKQVKKQQR 178
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPNKP+ SA+ F+++ R + + + A K ++WK M + DK P+
Sbjct: 3 KQKKDPNKPRGRMSAYAYFVQDRRSKAEG----QVNFTAFSKECADRWKHMDDGDKRPFN 58
Query: 90 AKAEKRKVEYEKDMKNY 106
K+ K+ Y+++M Y
Sbjct: 59 DKSASDKIRYDREMSGY 75
>gi|301097589|ref|XP_002897889.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262106637|gb|EEY64689.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 210
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P+ K + KDPN PKR SA+F F + R++ + ++P NK + + EKW+++
Sbjct: 100 PSFESTKGSRKKKDPNAPKRALSAYFFFCNDIRQEVRDENP-NKKITEIATLLAEKWRAL 158
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYN 107
+ +A Y E+ KV+Y++ M YN
Sbjct: 159 PDKKRAKYQKMNEEAKVKYQQQMDVYN 185
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY--VA 90
KD N PKR SAF F + R+ KK+ P + + G +WK +S+ D+ PY +A
Sbjct: 24 KDKNAPKRALSAFMFFSNDIRDTVKKEMP-DLQFLEISSEIGRRWKQISDEDRRPYDELA 82
Query: 91 KAEKRKVEYEKD 102
A+KR+ + EK+
Sbjct: 83 AADKRRYQEEKE 94
>gi|729729|sp|P40622.1|HMG1A_CHITE RecName: Full=Mobility group protein 1A
gi|156587|gb|AAA21712.1| high mobility group protein 1a [Chironomus tentans]
Length = 114
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SA+ +++ RE KK++P K V + K GGE W+ M DK+ + AKA K K
Sbjct: 4 KPKRPLSAYMLWLNSARESIKKENPDFK-VTEIAKKGGELWRGMK--DKSEWEAKAAKMK 60
Query: 97 VEYEKDMKNYNR 108
EYEK MK + R
Sbjct: 61 EEYEKAMKEFER 72
>gi|357608070|gb|EHJ65807.1| mobility group protein 1B [Danaus plexippus]
Length = 180
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K K +KPKRP SA+ +++ REQ K ++P K V + K GGE W+SM DK +
Sbjct: 57 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLK-VTEIAKKGGEIWRSMK--DKTVWE 113
Query: 90 AKAEKRKVEYEKDMKNYN 107
KA K K +Y KD+++YN
Sbjct: 114 EKAAKAKEQYTKDLESYN 131
>gi|349576469|dbj|GAA21640.1| K7_Nhp6bp [Saccharomyces cerevisiae Kyokai no. 7]
Length = 99
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GEKWK
Sbjct: 8 KQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENP-DVTFGQVGRILGEKWK 66
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
+++ +K PY +KA+ K YE + + YN
Sbjct: 67 ALTAEEKQPYESKAQADKKRYESEKELYN 95
>gi|395857899|ref|XP_003801318.1| PREDICTED: high mobility group protein B4 [Otolemur garnettii]
Length = 187
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ + KDP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + A+
Sbjct: 80 GKRKKRRKKDPQAPRRPPSSFLLFCKDHYAQLKRENP-NWSVVQVAKASGKMWSLSTNAE 138
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRR 109
K PY +A + +Y+++++ Y R+
Sbjct: 139 KQPYEERAALLRAKYQEELQIYRRQ 163
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAA--VGKAGGEKWKSMSEADKAPYVAKAEK 94
+PK S++ F+ +R ++K+ P N V + EKW+S+S+ +KA Y A A+
Sbjct: 8 RPKVNVSSYIHFLLNYRNKFKEQQP-NTYVGFKDFSRKCSEKWRSISKHEKAKYEALAKL 66
Query: 95 RKVEYEKDMKNYN 107
K Y+++M +Y+
Sbjct: 67 DKARYQEEMMHYD 79
>gi|332254661|ref|XP_003276450.1| PREDICTED: high mobility group protein B4 [Nomascus leucogenys]
Length = 189
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA GE W + ++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGEMWSTTTDL 137
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVN 125
+K PY +A + +Y ++++ Y ++ + + MS N
Sbjct: 138 EKHPYEQRAALLRAKYFEELELYRKQHKQCNARKKYRMSARN 179
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVA--AVGKAGGEKWKSMSEADKAPYVAKAEK 94
KPK S++ F+ +R +K+ P N V + E+W+S+S+ +KA Y A A+
Sbjct: 8 KPKANVSSYVHFLLNYRNTFKEQQP-NTYVGFKEFSRKCSEEWRSISKHEKAKYEALAKV 66
Query: 95 RKVEYEKDMKNY 106
K Y+++M NY
Sbjct: 67 DKARYQEEMMNY 78
>gi|443897201|dbj|GAC74542.1| putative N2 [Pseudozyma antarctica T-34]
Length = 1388
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 15/93 (16%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFRE---------QYKKDHPKNKSVAAVGKAG 73
KAG+ KDPN PK+P SA+F+F+ R + +++ K +AA
Sbjct: 1294 KAGKSRKGNLKDPNAPKKPLSAYFLFLRAIRADPNMTQAVFEGEQETTKQSVLAAA---- 1349
Query: 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
KW+S+SE +K PY+ +AE K YE+ + Y
Sbjct: 1350 --KWRSLSETEKQPYLDRAEADKARYERLRREY 1380
>gi|403267260|ref|XP_003925762.1| PREDICTED: uncharacterized protein LOC101050525 [Saimiri
boliviensis boliviensis]
Length = 645
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKRP S FF+F EFR + K +P S+ V K GE+ ++S++ K P + KA
Sbjct: 242 DPDAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKRLGERRNNLSDSGKQPSITKAA 300
Query: 94 KRKVEYEKDMKNYNRR 109
K K E+D Y +
Sbjct: 301 KLKERNEEDGAEYKSK 316
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYV 89
A DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ +
Sbjct: 158 ARGDPKKPKGKVSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSRKEKSTFD 217
Query: 90 AKAEKRKVEYEKDM 103
+ KV Y+++M
Sbjct: 218 EMTKVDKVRYDQEM 231
>gi|393236123|gb|EJD43674.1| hypothetical protein AURDEDRAFT_114700 [Auricularia delicata
TFB-10046 SS5]
Length = 125
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKR SA+ F++++RE+ K+++P + + +GK G KWK MS+ DK PYV +AE+ KV
Sbjct: 28 PKRALSAYMFFVKDWRERIKEENP-DAAFGEIGKLMGAKWKEMSDEDKQPYVEQAEEDKV 86
Query: 98 EYEKD 102
EKD
Sbjct: 87 RAEKD 91
>gi|340992807|gb|EGS23362.1| hypothetical protein CTHT_0010300 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 104
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ ++++P S VGK GE+WK++++ +APY AKA
Sbjct: 21 DPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKILGERWKALTDKQRAPYEAKAA 79
Query: 94 KRKVEYEKDMKNYN 107
K YE + + YN
Sbjct: 80 ADKKRYEDEKQAYN 93
>gi|260942113|ref|XP_002615355.1| hypothetical protein CLUG_04237 [Clavispora lusitaniae ATCC 42720]
gi|238850645|gb|EEQ40109.1| hypothetical protein CLUG_04237 [Clavispora lusitaniae ATCC 42720]
Length = 195
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 6/104 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS---VAAVGKAGGEKWKSMSEADKA 86
K A+DPN PK+P +A+++F E+ +E+ K + KS V K E+WKSMS+ K+
Sbjct: 53 KMARDPNLPKKPLNAYWIFFEKEKERVKAELEAGKSEKPALDVSKTLTERWKSMSDEQKS 112
Query: 87 PYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDD 130
PY E+ ++ Y+ +M +N+ + + E+ ++S+ N+ + D
Sbjct: 113 PYQKLYEEDRLRYQTEMTIFNQNK---DGENSTTISQQNNREPD 153
>gi|196010223|ref|XP_002114976.1| hypothetical protein TRIADDRAFT_64155 [Trichoplax adhaerens]
gi|190582359|gb|EDV22432.1| hypothetical protein TRIADDRAFT_64155 [Trichoplax adhaerens]
Length = 694
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KPAK K A+DPN PKRP S + +++++ R++ K ++P + +VA V K GE WKS
Sbjct: 541 KPAK----KVKNARDPNLPKRPLSGYMLWLQKQRDRIKNENP-SFTVAEVAKKAGEIWKS 595
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
+ E +K + ++ K K +Y KDM YN +
Sbjct: 596 LKEEEKKKWNNESAKLKEQYNKDMAEYNEQ 625
>gi|444313359|ref|XP_004177337.1| hypothetical protein TBLA_0A00160 [Tetrapisispora blattae CBS 6284]
gi|387510376|emb|CCH57818.1| hypothetical protein TBLA_0A00160 [Tetrapisispora blattae CBS 6284]
Length = 400
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
+DPN PKRP +A+ +F EE +E+ K+ A V KA E WK++ E ++ PY
Sbjct: 169 RDPNLPKRPTNAYLLFCEETKEKIKQSGS-----ADVTKALAEAWKNLDEQERKPYYKLY 223
Query: 93 EKRKVEYEKDMKNYNRR 109
+ ++ Y+++M+ YN +
Sbjct: 224 SEDRLRYQREMQIYNTK 240
>gi|328856362|gb|EGG05484.1| hypothetical protein MELLADRAFT_31192 [Melampsora larici-populina
98AG31]
Length = 82
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SA+ F +++RE+ K ++P+ S +G+ G KWKS+ E +K PY
Sbjct: 5 KREKDPNAPKRPLSAYMFFSQDWRERIKTENPEV-SFGEIGRLLGLKWKSLGEEEKKPYE 63
Query: 90 AKAEKRKVEYEKDMKNYNR 108
A + K +E + Y R
Sbjct: 64 DMACRDKKRHETEKAEYER 82
>gi|242064692|ref|XP_002453635.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
gi|241933466|gb|EES06611.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
Length = 488
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
+P SA+FV+ +E R + K+V +GK GE+WK+M+EA KAPY A K+K EY
Sbjct: 290 QPMSAYFVYSQERRAALVAEK---KNVPEIGKITGEEWKNMTEAQKAPYEKVARKQKEEY 346
Query: 100 EKDMKNYNRRQPEE 113
+K M+ Y +++ EE
Sbjct: 347 QKQMEVYKQKKIEE 360
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPN+PKRPAS+F +F +E R+Q ++ P N S+ A+ KWK +S ++ + AK
Sbjct: 409 DPNRPKRPASSFLLFSKEARKQLLEERPGINNSSLNALISV---KWKELSGEERQAWNAK 465
Query: 92 AEKRKVEYEKDMKNYNRRQ 110
A Y+K+M+ Y + Q
Sbjct: 466 AAPAMAAYKKEMEEYTKAQ 484
>gi|365762037|gb|EHN03653.1| Nhp6bp [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401841847|gb|EJT44170.1| NHP6B-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 102
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GEKWK+++ DK
Sbjct: 18 KRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENP-DVTFGQVGRILGEKWKALTAEDK 76
Query: 86 APYVAKAEKRKVEYEKDMKNYN 107
PY +KA+ K YE + + YN
Sbjct: 77 QPYESKAQADKKRYESEKELYN 98
>gi|290986470|ref|XP_002675947.1| predicted protein [Naegleria gruberi]
gi|284089546|gb|EFC43203.1| predicted protein [Naegleria gruberi]
Length = 215
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D N PKRP S++ +F + +R+ ++P K V V K GEKW M++A+KAPYV KA
Sbjct: 116 DENAPKRPLSSYMLFSQTYRKSLVAENPTLK-VTEVAKLVGEKWGKMNDAEKAPYVNKAA 174
Query: 94 KRKVEYEKDMKNYNRRQ 110
+ K Y + Y+ Q
Sbjct: 175 ELKAAYNIEKSKYDATQ 191
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKD--HPKNKSVAAVGKAGGEKWKSMS 81
AG+KS K KDPN PKRP + FF+F +E RE+ K + KS + V K GE+W ++
Sbjct: 2 AGKKSSKK-KDPNAPKRPKTGFFLFCDERREKVKATLGEGEKKSASEVSKLLGEEWGKLT 60
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEE 115
+++K Y + ++K Y+K + Y + +PE +
Sbjct: 61 DSEKDKYNSVSKKNMEVYKKQFEEYKKNKPESSD 94
>gi|351698366|gb|EHB01285.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 211
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP+SAFF+F E R + K +HP S+ K G+ W S DK PY K K
Sbjct: 94 NAPKRPSSAFFLFCCEHRPKIKSEHP-GLSIGDTAKELGKMWSEQSAKDKQPYEQKVAKL 152
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 153 KEKYEKDIAPY 163
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ +
Sbjct: 5 DPNKPRGKMSSYAFFVQNCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMP 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSYKTRYDREMKNY 78
>gi|432889764|ref|XP_004075350.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 194
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F +FR + K + P S+ K GE W
Sbjct: 76 NYVPPKGQKK--KRFKDPNAPKRPPSAFFLFCADFRPKIKSESP-GLSIGDTAKKLGEMW 132
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S S +K PY KA K K +Y+KD+ Y
Sbjct: 133 NSSSAEEKQPYEKKAAKLKEKYDKDIVAY 161
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K +
Sbjct: 2 VKDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSPKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 62 MAKQDKVRYEREMKNY 77
>gi|45383524|ref|NP_989640.1| transcription factor SOX-18 [Gallus gallus]
gi|14625028|gb|AAK71352.1|AF302936_1 transcription factor SOX18 [Gallus gallus]
Length = 418
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
AGR GKA +D ++ +RP +AF V+ ++ R++ + +P + A + K G+ WK++S +
Sbjct: 87 AGRAEGKAGED-SRIRRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGQSWKALSAS 144
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRR 109
DK P+V +AE+ ++++ +D NY R
Sbjct: 145 DKRPFVEEAERLRIQHLQDHPNYKYR 170
>gi|351704050|gb|EHB06969.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 156
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F ++R + K +HP S K GE W S DK PY K K
Sbjct: 43 NAPKRPPSAFFLFCSKYRPKIKSEHP-GLSTGDTAKKSGEMWSEQSAKDKQPYEQKGAKL 101
Query: 96 KVEYEKDMKNYN 107
+YEKD+ Y+
Sbjct: 102 MEKYEKDIAAYH 113
>gi|339242839|ref|XP_003377345.1| high mobility group protein 1.2 [Trichinella spiralis]
gi|316973861|gb|EFV57410.1| high mobility group protein 1.2 [Trichinella spiralis]
Length = 229
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK ++ KDPN PKR SAFF F R + ++ HP K V V + G WK++ E +K
Sbjct: 112 RKRKRSKKDPNAPKRALSAFFFFSNSKRAEIQQAHPDWK-VGQVAQELGRMWKAIDEDEK 170
Query: 86 APYVAKAEKRKVEYEKDMKNY 106
+ A K + YE+DMKNY
Sbjct: 171 RKFEDMAAKDRTRYEEDMKNY 191
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
++ KP+ + + F++ E++KK +P +N V V K KWK+M++ +K +
Sbjct: 31 VREAGKPRGKTTPYGFFVKMCYEEHKKKYPNENVQVTEVSKKCSAKWKTMTQEEKHRFYE 90
Query: 91 KAEKRKVEYEKDMKNY 106
A K +V Y+ +++ Y
Sbjct: 91 LAAKDRVRYDAELEAY 106
>gi|195431780|ref|XP_002063906.1| GK15658 [Drosophila willistoni]
gi|194159991|gb|EDW74892.1| GK15658 [Drosophila willistoni]
Length = 112
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
+PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+ + DK + KA K+K
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKTEWEQKAIKQK 61
Query: 97 VEYEKDMKNY 106
EY K +K Y
Sbjct: 62 EEYNKAVKEY 71
>gi|296221849|ref|XP_002756934.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 203
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KD N PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 87 KDRNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWSNTAADDKQPYEKKA 145
Query: 93 EKRKVEYEKDMKNY 106
K K + EKD+ Y
Sbjct: 146 AKLKEKCEKDIAAY 159
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
P+ S++ ++ +E++KK P + K E+WK+MS +K + A+ K
Sbjct: 10 PRGKMSSYAFLVQTCQEEHKKQQP---DASEFSKTCSERWKTMSAKEKGKFEDMAKADKA 66
Query: 98 EYEKDMKNY 106
YE++MK Y
Sbjct: 67 HYEREMKTY 75
>gi|312075672|ref|XP_003140521.1| high mobility group protein 1.2 [Loa loa]
gi|307764316|gb|EFO23550.1| high mobility group protein 1.2 [Loa loa]
Length = 211
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
A RK + KDPN PKR SAFF F + R + ++ HP+ K V V + G WK++ E
Sbjct: 83 ALRKRKRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRFWKALGEE 141
Query: 84 DKAPYVAKAEKRKVEYEKDMKNY 106
++A Y KA + K Y ++M+NY
Sbjct: 142 ERAVYERKALEDKERYAEEMRNY 164
>gi|70946314|ref|XP_742884.1| high mobility group protein [Plasmodium chabaudi chabaudi]
gi|56522109|emb|CAH79930.1| high mobility group protein, putative [Plasmodium chabaudi
chabaudi]
Length = 102
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFR-EQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
+K K KDP+ PKR SA+ F +E R E +D +K VA VGK GE W + E +
Sbjct: 15 KKRRKNKKDPHAPKRSLSAYMFFAKEKRAEIITRDPSLSKDVATVGKMIGEAWNKLDERE 74
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
KAPY KA++ K+ YEK+ Y
Sbjct: 75 KAPYEKKAQEDKLRYEKEKMEY 96
>gi|440900657|gb|ELR51738.1| High mobility group protein B1 [Bos grunniens mutus]
Length = 224
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPY 144
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|297302803|ref|XP_001082943.2| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 169
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP S+FF+F E+R + K +HP V K GE W + + DK PY KA
Sbjct: 50 KDPNVPKRPPSSFFLFCSEYRPKTKGEHP-GLPFDDVAKNLGETWNNTAAGDKQPYEKKA 108
Query: 93 EKRKVEYEKDMKNY 106
K K +YE+D Y
Sbjct: 109 AKLKAKYERDTAAY 122
>gi|321259756|ref|XP_003194598.1| nonhistone protein 6 [Cryptococcus gattii WM276]
gi|317461070|gb|ADV22811.1| Nonhistone protein 6, putative [Cryptococcus gattii WM276]
Length = 110
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPNKPKR SA+ F++++RE+ K ++P+ + VGK G KW+ M+E +K PY AKA
Sbjct: 23 KDPNKPKRALSAYMFFVQDYRERIKAENPEA-TFGDVGKLLGIKWREMNENEKKPYEAKA 81
>gi|1870104|emb|CAA85042.1| NHP6B [Saccharomyces cerevisiae]
Length = 99
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GE+WK
Sbjct: 8 KQPKEPKKRTTRRKKDPNAPKRRLSAYMFFANENRDIVRSENP-DVTFGQVGRILGERWK 66
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
+++ +K PY +KA+ K YE + + YN
Sbjct: 67 ALTAEEKQPYESKAQADKKRYESEKELYN 95
>gi|71012570|ref|XP_758511.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
gi|46098169|gb|EAK83402.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
Length = 125
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+++ KA KDP+ PKRP SA+ F ++ RE+ K +P+ VG+ G KWK MSEA+K
Sbjct: 42 KRTTKAKKDPDAPKRPLSAYMFFSQDQRERVKNANPE-AGFGEVGRLLGAKWKEMSEAEK 100
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQ 110
PY A + K E + YN+R+
Sbjct: 101 KPYNDMANRDKARAEAEKAAYNKRR 125
>gi|213405987|ref|XP_002173765.1| mismatch-binding protein cmb1 [Schizosaccharomyces japonicus
yFS275]
gi|212001812|gb|EEB07472.1| mismatch-binding protein cmb1 [Schizosaccharomyces japonicus
yFS275]
Length = 316
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFRE----QYKKDHPKNKSVAAVGKAGGEKW 77
AK +K+ K KDP++PK+P S+F F ++ R+ + K P S+ K GE W
Sbjct: 141 AKGIKKNSKPIKDPSEPKKPLSSFLYFTQKLRQDPEFKQKLMGPAVYSITEFSKKAGEVW 200
Query: 78 KSMSEADKAPYVAKAEKRKVEY 99
KS+S+ KAP++ A R+ +Y
Sbjct: 201 KSLSDDIKAPFIEDAATRRAQY 222
>gi|62647362|ref|XP_575506.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|293346835|ref|XP_001060814.2| PREDICTED: high mobility group protein B1-like isoform 1 [Rattus
norvegicus]
Length = 214
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN KRP SAFF+F E+R + K +HP S+ V K GE W + + DK P KA
Sbjct: 90 KDPNALKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWTNTAVDDKQPCEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSV--AAVGKAGGEKWKSMSEADKAPYVAKA 92
P KP+ S+ F++ RE++KK H N SV + K E+WK+MS +K + A
Sbjct: 6 PKKPRGKMSSHAFFVQTCREEHKKKH-LNASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444517137|gb|ELV11379.1| High mobility group protein B1 [Tupaia chinensis]
Length = 204
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + K PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDVAKRLGELWNNTAADGKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K + S++ F++ F+E++KK HP + S + K EKWK+MS +K + +A
Sbjct: 5 DPKKRRSIMSSYAFFVQTFQEEHKKQHPDASVSFSEFPKKCSEKWKAMSAKEKGKFEDRA 64
Query: 93 EKRKVEYEKDMKN 105
+ K YE+DMK
Sbjct: 65 KADKASYERDMKT 77
>gi|294927522|ref|XP_002779152.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|294931694|ref|XP_002779970.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239888135|gb|EER10947.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239889753|gb|EER11765.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 171
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 15 LSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKK--DHPKNKSVAAVGKA 72
L + KP G+K+ K+ +DPN PK+P +AFF+F + RE+ K+ D P K
Sbjct: 43 LGLEYKPTVHGKKTKKSVRDPNMPKKPKTAFFLFCDTEREKAKERGDGP------PTTKD 96
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
E WKS + KA Y + K K +YEKDM Y
Sbjct: 97 MAETWKSADDDVKAHYSNEQAKLKEQYEKDMNAY 130
>gi|443897570|dbj|GAC74910.1| HMG box-containing protein [Pseudozyma antarctica T-34]
Length = 280
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K G K +DP KPKRP SAFF F+ + R ++ K GGE+WK M+
Sbjct: 193 KKGIKGTAFLRDPAKPKRPNSAFFEFLNDLRA----SESVIPNITEFSKRGGERWKQMTP 248
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYN-RRQPE 112
KAPY +A + +Y++D++ YN R PE
Sbjct: 249 DQKAPYEQRALQALEQYKRDLEVYNSTRGPE 279
>gi|254580675|ref|XP_002496323.1| ZYRO0C15752p [Zygosaccharomyces rouxii]
gi|238939214|emb|CAR27390.1| ZYRO0C15752p [Zygosaccharomyces rouxii]
Length = 98
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VG+ GEKWK+++ +K PY AKAE
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRAENP-DVTFGQVGRILGEKWKALTPDEKTPYEAKAE 75
Query: 94 KRKVEYEKDMKNYNRRQPEEEE 115
K YE + + YN + +EE
Sbjct: 76 ADKKRYESEKELYNATRASKEE 97
>gi|440896783|gb|ELR48616.1| High mobility group protein B1, partial [Bos grunniens mutus]
Length = 165
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDP+ PKR SAFF+F E+ + K DHP S+ V K GE W + + DK PY KA
Sbjct: 80 KDPSTPKRDPSAFFLFCSEYCPKVKHDHP-GLSIGDVAKKLGETWNNTAADDKQPYEKKA 138
Query: 93 EKRKVEYEKDM 103
K K +YEKD+
Sbjct: 139 AKLKEKYEKDI 149
>gi|124805429|ref|XP_001350438.1| high mobility group protein [Plasmodium falciparum 3D7]
gi|6525222|gb|AAF15357.1|AF201952_1 high mobility group protein [Plasmodium falciparum]
gi|23496560|gb|AAN36118.1|AE014844_29 high mobility group protein [Plasmodium falciparum 3D7]
Length = 97
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEAD 84
RK K KDP+ PKR SA+ F +E R + P+ +K VA VGK GE W + E +
Sbjct: 9 RKRRKNKKDPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKE 68
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
KAP+ KA++ K+ YEK+ Y
Sbjct: 69 KAPFEKKAQEDKLRYEKEKAEY 90
>gi|402221853|gb|EJU01921.1| HMG-box [Dacryopinax sp. DJM-731 SS1]
Length = 128
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
GK KDPN PK S + +F ++ RE+ KK+ + + + + WK++SE DK PY
Sbjct: 43 GKKEKDPNAPKGAKSPYIIFCQDNREEAKKEAENTREIMRIL---ADMWKNLSEQDKEPY 99
Query: 89 VAKAEKRKVEYEKDMKNY 106
AK++K K +E++MK Y
Sbjct: 100 KAKSQKDKTRFEREMKAY 117
>gi|440799045|gb|ELR20106.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 143
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K GK KDPN PKR +A+ +F E R + K D+P+ + K +KWK++S+ +KA
Sbjct: 42 KKGKKEKDPNAPKRAKTAYIIFATEERPRAKADNPE-LGFGDLTKCVSDKWKALSDDEKA 100
Query: 87 PYVAKAEKRKVEYEKDMKNYNR 108
PY+ KA + K Y ++ YN+
Sbjct: 101 PYLEKAAQDKERYADEVSKYNK 122
>gi|366998295|ref|XP_003683884.1| hypothetical protein TPHA_0A03740 [Tetrapisispora phaffii CBS 4417]
gi|357522179|emb|CCE61450.1| hypothetical protein TPHA_0A03740 [Tetrapisispora phaffii CBS 4417]
Length = 93
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ K ++P + S VG+ GEKWK+++ +K P+ AKAE
Sbjct: 17 DPNAPKRALSAYMFFANETRDIVKAENP-DVSFGQVGRILGEKWKALTAEEKIPFEAKAE 75
Query: 94 KRKVEYEKDMKNYN 107
K YE + YN
Sbjct: 76 ADKKRYESEKALYN 89
>gi|403419540|emb|CCM06240.1| predicted protein [Fibroporia radiculosa]
Length = 763
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR-------EQYKKDHPKNK-SVAAVGK 71
A R++GK+ KDPN PK+P SA+F+F++ R E + + K SV A GK
Sbjct: 616 AQRRAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRSDPELVKEVFGDESETTKQSVLAAGK 675
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++ ++ P++A+AE+ K+EYE K Y
Sbjct: 676 -----WRSMTDEERKPFLAQAEQEKLEYESARKLY 705
>gi|242003301|ref|XP_002422686.1| High mobility group protein B2, putative [Pediculus humanus
corporis]
gi|212505508|gb|EEB09948.1| High mobility group protein B2, putative [Pediculus humanus
corporis]
Length = 187
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
K+ NKP+ +A+ F++ RE++KK HP +N A K E+WK+M + +K +
Sbjct: 5 KNDNKPRGRMTAYAFFVQTCREEHKKKHPDENVVFAEFSKKCAERWKTMLDKEKRRFHEM 64
Query: 92 AEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSGEVFFWGCFD 144
AEK K+ Y+ +M+NY P + E+ K + D + + S FFW C D
Sbjct: 65 AEKDKLRYDSEMQNY---VPSKAEKRGKKRKHIKDPNAPKR-SLSAFFWFCND 113
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 18 NKKPAKAGR--KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
N P+KA + K K KDPN PKR SAFF F + R + K +P+ V V K G
Sbjct: 78 NYVPSKAEKRGKKRKHIKDPNAPKRSLSAFFWFCNDERPKVKAINPEY-GVGDVAKELGR 136
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP 111
+W K+ Y A AEK D Y+R++P
Sbjct: 137 RWAEADPDTKSKYEAMAEK-------DKARYDRKKP 165
>gi|339046261|ref|NP_009647.2| Nhp6bp [Saccharomyces cerevisiae S288c]
gi|341942236|sp|P11633.3|NHP6B_YEAST RecName: Full=Non-histone chromosomal protein 6B
gi|4036|emb|CAA33378.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45271022|gb|AAS56892.1| YBR089C-A [Saccharomyces cerevisiae]
gi|151946484|gb|EDN64706.1| nonhistone chromosomal protein [Saccharomyces cerevisiae YJM789]
gi|190408749|gb|EDV12014.1| 11 kDa nonhistone chromosomal protein [Saccharomyces cerevisiae
RM11-1a]
gi|256274037|gb|EEU08951.1| Nhp6bp [Saccharomyces cerevisiae JAY291]
gi|290878106|emb|CBK39165.1| Nhp6bp [Saccharomyces cerevisiae EC1118]
gi|333454471|tpg|DAA07210.2| TPA: Nhp6bp [Saccharomyces cerevisiae S288c]
Length = 99
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GE+WK
Sbjct: 8 KQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENP-DVTFGQVGRILGERWK 66
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
+++ +K PY +KA+ K YE + + YN
Sbjct: 67 ALTAEEKQPYESKAQADKKRYESEKELYN 95
>gi|968888|dbj|BAA09924.1| HMG-1 [Homo sapiens]
Length = 215
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
EK K +YEKD+ Y
Sbjct: 149 EKLKEKYEKDIAAY 162
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+R S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRRKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|348680492|gb|EGZ20308.1| hypothetical protein PHYSODRAFT_285400 [Phytophthora sojae]
Length = 211
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P+ K + KDPN PKR SA+F F + R++ + ++P NK + + E+W+++
Sbjct: 96 PSFETTKGSRKKKDPNAPKRALSAYFFFCNDIRQEVRDENP-NKKITEIATLLAERWRAL 154
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYN 107
+ +A Y E+ KV+Y++ M YN
Sbjct: 155 PDKKRAKYQKMHEEAKVKYQQQMDAYN 181
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY--VA 90
KD N PKR SAF F + RE KK+ P+ + + G +WK +S+ ++ PY +A
Sbjct: 20 KDKNAPKRALSAFMFFSNDIRETVKKEMPE-LAFLQISSEIGRRWKKISDEERRPYDELA 78
Query: 91 KAEKRKVEYEKD 102
A+KR+ + EK+
Sbjct: 79 AADKRRYQEEKE 90
>gi|413943061|gb|AFW75710.1| hypothetical protein ZEAMMB73_996127 [Zea mays]
Length = 95
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 40/50 (80%), Gaps = 2/50 (4%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
KP K GRK+ KA KDPNKPKR +AFFV M EFR+++K+ +PK KSVAAV
Sbjct: 30 KPTK-GRKA-KAGKDPNKPKRAPNAFFVLMGEFRKEFKEKNPKIKSVAAV 77
>gi|158297853|ref|XP_318023.4| AGAP004791-PA [Anopheles gambiae str. PEST]
gi|158297857|ref|XP_001689081.1| AGAP004789-PA [Anopheles gambiae str. PEST]
gi|157014526|gb|EAA13138.4| AGAP004791-PA [Anopheles gambiae str. PEST]
gi|157014528|gb|EDO63498.1| AGAP004789-PA [Anopheles gambiae str. PEST]
Length = 324
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P +K KA KD N PK P + + +M E RE ++ HP N + V K E+W +
Sbjct: 57 PKTTKKKRQKAPKDANAPKHPLTGYVRYMNEHREGVRQKHP-NLTPIEVTKIMAEEWSKL 115
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
SE K PY+ AE K Y K++ Y
Sbjct: 116 SEERKKPYLEAAEVDKERYNKEISEY 141
>gi|27466905|gb|AAO12859.1| high mobility group protein [Branchiostoma belcheri tsingtauense]
Length = 164
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
V K A+ GR+ K KDPN PKR SAFF++ + R + + HP + V + K G++
Sbjct: 78 VPPKGAEGGRRKRKK-KDPNAPKRAMSAFFMYCADARPKVRAAHP-DFQVGDIAKILGKQ 135
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDM 103
WK +S++DKA Y KA+ + Y+K++
Sbjct: 136 WKEISDSDKAKYEKKAQTERARYQKEL 162
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV-AAVGKAGGEKWKSMSEADKAPYVAK 91
KD NKPK SA+ F++E R +++K +P + V + +WK+M++ +K +
Sbjct: 3 KDKNKPKGKMSAYACFVQECRREHEKKYPNKQVVFTEFSQKCASRWKTMNDDEKKRFQVL 62
Query: 92 AEKRKVEYEKDMKNY 106
AE K YE++M Y
Sbjct: 63 AEADKRRYEQNMAKY 77
>gi|384500344|gb|EIE90835.1| hypothetical protein RO3G_15546 [Rhizopus delemar RA 99-880]
Length = 183
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 22 AKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
K GRKS AA +DPN PK P + FF++ R+ K + P N+S+ V + G+K
Sbjct: 34 VKPGRKSTNAAVAKKKRDPNAPKGPGNVFFLYCRMERDNIKDEVP-NESLGEVTRLLGQK 92
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
WK++++ +K Y +K EYE MK+Y
Sbjct: 93 WKALTKEEKQKYYDIYKKEMEEYESAMKSYT 123
>gi|268565525|ref|XP_002639471.1| Hypothetical protein CBG04066 [Caenorhabditis briggsae]
Length = 689
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+PKR A+A+F++ R K+D +V V K GG KWK MS DK + KA
Sbjct: 554 DPNEPKRAATAYFLWFNANRASLKED---GDTVPEVAKKGGAKWKEMSADDKKEWEQKAA 610
Query: 94 KRKVEYEKDMKNY 106
+ K+ YE +MK Y
Sbjct: 611 QDKIRYENEMKEY 623
>gi|401624308|gb|EJS42370.1| abf2p [Saccharomyces arboricola H-6]
Length = 183
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKRP SA+F+F+++ R Q+ K++P + A + K GEKW+++ K Y+++ +K
Sbjct: 43 PKRPTSAYFLFLQDHRSQFVKENPTLRP-AEISKVAGEKWQTLDAGIKDKYLSQRKKLFS 101
Query: 98 EYEKDMKNYNRRQP 111
EY+K K Y+ + P
Sbjct: 102 EYQKAKKEYDEKLP 115
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKRPA F + E R + HP +KS + K G+KW+S+ + K Y+
Sbjct: 116 PKRPAGPFIKYATEVRSKVFAQHP-DKSQLELMKIIGDKWQSLDKNTKEKYIQ------- 167
Query: 98 EYEKDMKNYNRRQPEE 113
EY+ ++ YN P E
Sbjct: 168 EYKTAIQEYNAIFPLE 183
>gi|403222987|dbj|BAM41118.1| high-mobility-group protein [Theileria orientalis strain Shintoku]
Length = 93
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSM 80
+K+ +K + KDPN PKR S++ F +E R + K++P K VA VGK G W S+
Sbjct: 6 SKSAKKGKRTKKDPNAPKRALSSYMFFAKEKRNELIKENPDLAKDVATVGKLVGAAWNSL 65
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+++KAPY AE + YE++ Y +
Sbjct: 66 DDSEKAPYEKLAEADRERYEREKLEYQK 93
>gi|124512426|ref|XP_001349346.1| high mobility group protein [Plasmodium falciparum 3D7]
gi|23499115|emb|CAD51195.1| high mobility group protein [Plasmodium falciparum 3D7]
Length = 99
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP PKR SA+ ++++ R + K+ P+ K VA VGK GE W +S A KAPY KA
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKA 79
Query: 93 EKRKVEYEKDMKNYNRRQPE 112
+ KV Y K+++ Y ++ E
Sbjct: 80 QLDKVRYSKEIEEYRKKNQE 99
>gi|71662243|ref|XP_818131.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70883364|gb|EAN96280.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 26 RKSGKA-AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
R GK AKD N PKR SA+F F+ +FR K HP + SV KA G WK++S+
Sbjct: 192 RGGGKVKAKDENAPKRSMSAYFFFVSDFR----KKHP-DLSVTETSKAAGAAWKALSDDM 246
Query: 85 KAPYVAKAEKRKVEYEKDM 103
K PY A A+K K Y+++M
Sbjct: 247 KKPYEAMAQKDKERYQREM 265
>gi|324526583|gb|ADY48692.1| High mobility group protein 1.2, partial [Ascaris suum]
Length = 248
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK + KDPN PKR SAFF F + R + ++ HP+ K V V + G WK++S+ ++
Sbjct: 125 RKRKRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRYWKALSDEER 183
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQPEEE 114
Y KA + K Y ++M+NY +QP+ E
Sbjct: 184 MVYERKALEDKERYAEEMRNY--KQPKME 210
>gi|409075858|gb|EKM76234.1| hypothetical protein AGABI1DRAFT_16670, partial [Agaricus bisporus
var. burnettii JB137-S8]
gi|426193694|gb|EKV43627.1| hypothetical protein AGABI2DRAFT_56560, partial [Agaricus bisporus
var. bisporus H97]
Length = 106
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87
S K+ KDP PKR SA+ F +++RE+ K ++P+ VGK G KWK M E +K P
Sbjct: 13 SRKSKKDPKAPKRALSAYMFFSQDWRERIKTENPEA-GFGEVGKLLGAKWKEMDEEEKKP 71
Query: 88 YVAKAEKRKVEYEKDMKNYN 107
YV +A K EK+ +Y+
Sbjct: 72 YVEQATADKTRAEKEKASYD 91
>gi|255552860|ref|XP_002517473.1| structure-specific recognition protein, putative [Ricinus communis]
gi|223543484|gb|EEF45015.1| structure-specific recognition protein, putative [Ricinus communis]
Length = 640
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PK+ S F F + RE KK +P + VGK G+KWK +S +K PY AKA
Sbjct: 552 DPNAPKKAMSGFMFFSQMERENVKKSNP-GIAFGDVGKILGDKWKKLSAEEKEPYEAKAR 610
Query: 94 KRKVEYEKDMKNYNRRQPEEEEESEKSMSE 123
K Y++++ Y QP + + +S SE
Sbjct: 611 ADKKRYKEEVSGYKNPQPMDIDSGNESDSE 640
>gi|170097113|ref|XP_001879776.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645179|gb|EDR09427.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 114
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87
S K KDPNKPKR SA+ F +++R++ K ++P + VGK G KWK + E +K P
Sbjct: 21 SRKGKKDPNKPKRALSAYMFFSQDWRDRIKAENP-DAGFGEVGKLLGAKWKELDEEEKKP 79
Query: 88 YVAKAEKRKVEYEKDMKNYN 107
YV +A K K E+ Y+
Sbjct: 80 YVEQASKDKTRAEEAKAAYD 99
>gi|289741165|gb|ADD19330.1| high mobility group protein D [Glossina morsitans morsitans]
gi|289741169|gb|ADD19332.1| nucleosome-binding factor SPN POB3 subunit [Glossina morsitans
morsitans]
Length = 111
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
+PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+++ DK + KA K K
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKDNPGSK-VTDIAKRGGELWRAIK--DKTEWEQKAVKMK 61
Query: 97 VEYEKDMKNY 106
EY K +K Y
Sbjct: 62 EEYNKAVKEY 71
>gi|119588737|gb|EAW68331.1| hCG1991922, isoform CRA_a [Homo sapiens]
gi|119588738|gb|EAW68332.1| hCG1991922, isoform CRA_a [Homo sapiens]
Length = 188
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF++ E+ + K + P S V K GE W + + DK PY ++
Sbjct: 39 KDPNAPKRPPSAFFLYFSEYGPKIKGERP-GLSFGDVAKKLGEMWNNTAADDKQPYEKRS 97
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 98 AKLKEKYEKDIAAY 111
>gi|410044942|ref|XP_001169551.3| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 269
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF++ E+ + K + P S+ K GE W + + DK PY ++
Sbjct: 117 KDPNAPKRPPSAFFLYFSEYGPKIKGERP-GLSIGDAAKKLGEMWNNTAADDKQPYEKRS 175
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 176 AKLKEKYEKDIAAY 189
>gi|297303892|ref|XP_002806292.1| PREDICTED: high mobility group-T protein-like [Macaca mulatta]
Length = 159
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E + K +HP SV+ V K GE W +E DK PY KA
Sbjct: 55 KDPNAPKRPPLAFFMFSSEDCPKIK-EHP-GLSVSDVAKKLGEMWNYTAEDDKHPYEKKA 112
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ +
Sbjct: 113 VKLKEKYEKDIAAF 126
>gi|380025634|ref|XP_003696574.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Apis florea]
Length = 202
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W S K
Sbjct: 108 RRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPE-MGVGDIAKELGKLWMSTDLQTK 166
Query: 86 APYVAKAEKRKVEYEKDMKNYNRR----QPEE 113
+ Y+A AE+ + YE+++ YN+R PEE
Sbjct: 167 SKYMAIAEEDRARYEREIIAYNKRVKNYDPEE 198
>gi|289741167|gb|ADD19331.1| high mobility group protein D [Glossina morsitans morsitans]
Length = 111
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
+PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+++ DK + KA K K
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKDNPGSK-VTDIAKRGGELWRAIK--DKTEWEQKAVKMK 61
Query: 97 VEYEKDMKNY 106
EY K +K Y
Sbjct: 62 EEYNKAVKEY 71
>gi|29825377|gb|AAO92280.1| putative HMG-like protein [Dermacentor variabilis]
Length = 208
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K K AKDPN PKRP SAFF F + R +++ P + SV V K G +W + + K+
Sbjct: 85 KKRKRAKDPNAPKRPLSAFFWFCNDERPNVRQESP-DASVGEVAKELGRRWNEVGDDVKS 143
Query: 87 PYVAKAEKRKVEYEKDMKNYNRRQP 111
Y A K K YEK++K Y ++P
Sbjct: 144 KYEGLAAKDKARYEKELKAYKGKKP 168
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
+KP+ SA+ F++ RE++KK HP +N A K E+WK+MSE++K + A+K
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPNENVVFAEFSKKCAERWKTMSESEKKRFHQMADK 64
Query: 95 RKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSGEVFFWGCFD 144
K ++ +M +Y +P + ++S+K + S FFW C D
Sbjct: 65 DKKRFDTEMADY---KPPKGDKSKKRKRAKDPNAPKRPLSA--FFWFCND 109
>gi|383858168|ref|XP_003704574.1| PREDICTED: putative high mobility group protein 1-like 10-like
[Megachile rotundata]
Length = 202
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W S K
Sbjct: 108 RRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPE-MGVGDIAKELGKLWMSTDLQTK 166
Query: 86 APYVAKAEKRKVEYEKDMKNYNRR----QPEE 113
+ Y+A AE+ + YE+++ YN+R PEE
Sbjct: 167 SKYMAIAEEDRARYEREIIAYNKRVKNYDPEE 198
>gi|354543436|emb|CCE40155.1| hypothetical protein CPAR2_101930 [Candida parapsilosis]
Length = 315
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 11/101 (10%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEE----FREQYKKDHPKNKSVAA 68
+ + VN AK+ + +DP+ PKRP +A+ +F E+ R+Q ++D P+N +
Sbjct: 146 STIPVNPALAKSAKH-----RDPDLPKRPTNAYLLFCEQEKERLRQQQQED-PENNT-RD 198
Query: 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
+ KA E WK +SE DK P+ E+ ++ Y+K+M Y ++
Sbjct: 199 LSKAMTEAWKKLSEEDKQPFYKLYEEDRIRYQKEMVEYTKK 239
>gi|302652822|ref|XP_003018251.1| hypothetical protein TRV_07738 [Trichophyton verrucosum HKI 0517]
gi|291181876|gb|EFE37606.1| hypothetical protein TRV_07738 [Trichophyton verrucosum HKI 0517]
Length = 132
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+ + PY KA
Sbjct: 60 DPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSDKQRVPYEEKAA 118
Query: 94 KRKVEYEKDMKNYN 107
K YE + YN
Sbjct: 119 TDKQRYEDEKAAYN 132
>gi|328790254|ref|XP_624266.2| PREDICTED: putative high mobility group protein B1-like 1-like
[Apis mellifera]
Length = 202
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W S K
Sbjct: 108 RRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPE-MGVGDIAKELGKLWMSTDLQTK 166
Query: 86 APYVAKAEKRKVEYEKDMKNYNRR----QPEE 113
+ Y+A AE+ + YE+++ YN+R PEE
Sbjct: 167 SKYMAIAEEDRARYEREIIAYNKRVKNYDPEE 198
>gi|253314412|ref|NP_001156579.1| structure specific recognition protein-like [Acyrthosiphon pisum]
Length = 755
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D +PKR A+A+ ++ E RE+ K D+P S + K GGE WK MS +DK+ Y KA
Sbjct: 547 DDGRPKRAATAYMIWFNEAREEIKSDNP-GISFVDIAKKGGELWKKMSTSDKSKYEEKAA 605
Query: 94 KRKVEYEKDMKNY 106
K K EY + MK +
Sbjct: 606 KSKEEYIEAMKEF 618
>gi|170091612|ref|XP_001877028.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648521|gb|EDR12764.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 564
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR---EQYKKDHPKNKSVAAVGKAGGEK 76
A RK+GK+ KDPN PK+P SA+F+F++ R + ++ + K
Sbjct: 427 AQRKAGKSRKSNIKDPNAPKKPLSAYFMFLQRIRANPQLVREIFGEETETTKQSVLAAAK 486
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++ ++ P++A+AE+ K+EYE + Y
Sbjct: 487 WRSMTDGERQPFLAQAEQEKMEYEAARRLY 516
>gi|148703464|gb|EDL35411.1| mCG50005 [Mus musculus]
Length = 206
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAAKDKQPYEKKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +Y+KD+ Y
Sbjct: 150 KLKEKYKKDIAAY 162
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ +F++ E++KK HP + + + K E+W +MS +K + A
Sbjct: 5 DPKKPRGKMSSYALFVKTCWEEHKKKHPDASVNFSGFSKKCSERWNTMSAKEKGKFEGMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|339715208|ref|NP_001092721.2| high-mobility group box 1b [Danio rerio]
Length = 197
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F ++R + K ++P S+ + K GE W
Sbjct: 76 NYIPPKGEKK--KRFKDPNAPKRPPSAFFIFCGDYRPKIKGENP-GLSIGDIAKKLGEMW 132
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S S K PY KA K K +Y+KD+ Y
Sbjct: 133 NSSSAEVKQPYEKKAAKLKEKYDKDIALY 161
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 2 GKDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 62 MAKQDKVRYEREMKNY 77
>gi|255715687|ref|XP_002554125.1| KLTH0E14850p [Lachancea thermotolerans]
gi|238935507|emb|CAR23688.1| KLTH0E14850p [Lachancea thermotolerans CBS 6340]
Length = 93
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P +A +++ + KDPN PKR SA+ F E R+ + ++P + VG+ G+KWK++
Sbjct: 4 PREAKKRTTRRKKDPNAPKRALSAYMFFANENRDIVRAENP-GVTFGQVGRLLGDKWKAL 62
Query: 81 SEADKAPYVAK--AEKRKVEYEKDMKN 105
++ +K PY AK A+K++ E EK++ N
Sbjct: 63 TDEEKQPYEAKHAADKKRYESEKELYN 89
>gi|238486744|ref|XP_002374610.1| nucleosome binding protein (Nhp6a), putative [Aspergillus flavus
NRRL3357]
gi|317144043|ref|XP_003189559.1| non-histone chromosomal protein 6 [Aspergillus oryzae RIB40]
gi|220699489|gb|EED55828.1| nucleosome binding protein (Nhp6a), putative [Aspergillus flavus
NRRL3357]
Length = 104
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F + RE+ ++++P S VGK GEKWK++SEAD+ PY KA
Sbjct: 20 KDPNAPKRGLSAYMFFANDNREKVREENP-GISFGQVGKMLGEKWKALSEADRRPYEDKA 78
Query: 93 EKRKVEY 99
K Y
Sbjct: 79 AADKKRY 85
>gi|388857490|emb|CCF48846.1| uncharacterized protein [Ustilago hordei]
Length = 292
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K G K +DP KPKRP SAFF F+ + R + ++ K GGE+WK M+
Sbjct: 205 KKGIKGTAFLRDPAKPKRPNSAFFEFLNDLRAR----ETVIPNITEFSKRGGERWKQMAP 260
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYN-RRQPE 112
KAPY +A +Y++D++ YN R PE
Sbjct: 261 EQKAPYEQRALHALEQYKRDLEIYNSTRGPE 291
>gi|320585897|gb|EFW98576.1| nucleosome-binding protein [Grosmannia clavigera kw1407]
Length = 94
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E RE + ++P S VGK GE+WK+++E + PY AKA
Sbjct: 20 KDPNAPKRGLSAYMFFANEQRENVRDENP-GISFGQVGKILGERWKALNEKQRTPYEAKA 78
Query: 93 EKRKVEYEKDMKNYN 107
K YE YN
Sbjct: 79 AADKKRYEDAKAAYN 93
>gi|451847653|gb|EMD60960.1| hypothetical protein COCSADRAFT_98214 [Cochliobolus sativus ND90Pr]
Length = 106
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E RE+ ++D+P K VGK GEKWK+++E + PY AKA
Sbjct: 24 DPNAPKRGLSAYMFFANEQREKVREDNPGIK-FGEVGKLLGEKWKALNEKQRQPYEAKAA 82
Query: 94 KRKVEYEKDMKNYN 107
K YE++ Y
Sbjct: 83 LDKKRYEQEKAAYT 96
>gi|332017611|gb|EGI58308.1| Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit A [Acromyrmex echinatior]
Length = 1249
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+K KA +D P++P S +F+F+ + RE+ + +P + + + K +W + K
Sbjct: 65 KKRKKAPRDATAPRQPLSGYFLFLNDRREKVRNQNP-SLTFTEITKLLAAEWSKLPIDQK 123
Query: 86 APYVAKAEKRKVEYEKDMKNY---------NRRQPEEEEESEKSM------SEVNDEDDD 130
Y+ AE+ K Y ++ +Y N +Q E + E++K +E ND+D+D
Sbjct: 124 QRYLDAAEQDKERYNREFSDYKQTEAYRLFNEKQSERQNENKKERNGTDINTEQNDKDND 183
Query: 131 EEG 133
G
Sbjct: 184 FTG 186
>gi|242781691|ref|XP_002479852.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|242781695|ref|XP_002479853.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|242781700|ref|XP_002479854.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|218719999|gb|EED19418.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|218720000|gb|EED19419.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|218720001|gb|EED19420.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
Length = 103
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E RE+ + ++P + A+G+ GE WK +S+A++ PY KA
Sbjct: 20 KDPNAPKRGLSAYMFFANENRERVRDENP-GIAFGALGRKLGELWKGLSDAERKPYEDKA 78
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEES 117
K YE +Y EEEE S
Sbjct: 79 AADKKRYEDQKASYLAGGDEEEESS 103
>gi|157831385|pdb|1HSM|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
gi|157831386|pdb|1HSN|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
Length = 79
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA K K
Sbjct: 3 PKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 61
Query: 98 EYEKDMKNY 106
+YEKD+ Y
Sbjct: 62 KYEKDIAAY 70
>gi|432104603|gb|ELK31215.1| High mobility group protein B1 [Myotis davidii]
Length = 201
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN+PKRP SAFF+F E+ + K +HP S+ + + GE W + + DK P+ KA
Sbjct: 90 KDPNEPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDIAEKLGEMWNNTAADDKQPHEKKA 148
Query: 93 EKRKVEYEKDM 103
K K +YEKD+
Sbjct: 149 AKLKEKYEKDI 159
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S+ F++ + +++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKTSSCAFFVQTYWDEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MK Y
Sbjct: 65 KADKARYKREMKTY 78
>gi|412986017|emb|CCO17217.1| nucleosome binding protein [Bathycoccus prasinos]
Length = 346
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 6 SKSDTRNAKLSVNKKPAKAGRK---SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPK 62
++ DT +K K+ G+ S K KDPNKPK P + F+ RE+ K+ P
Sbjct: 138 TRGDTNPSKKKQQKRTGSGGKSTTSSTKEMKDPNKPKGPQGPYMCFVSHNREKIVKEFP- 196
Query: 63 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S GK G++W+++SE K Y AEK K YEK+M+ Y
Sbjct: 197 GISFGECGKKLGQRWQNLSEKGKEMYNEMAEKDKKRYEKEMEKY 240
>gi|340711910|ref|XP_003394509.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Bombus terrestris]
gi|350402612|ref|XP_003486543.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Bombus impatiens]
Length = 202
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W S K
Sbjct: 108 RRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPE-MGVGDIAKELGKLWMSTDLQTK 166
Query: 86 APYVAKAEKRKVEYEKDMKNYNRR----QPEE 113
+ Y+A AE+ + YE+++ YN+R PEE
Sbjct: 167 SKYMAIAEEDRARYEREIIAYNKRVKNYDPEE 198
>gi|71416266|ref|XP_810170.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70874664|gb|EAN88319.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 26 RKSGKA-AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
R GK AKD N PKR SA+F F+ +FR K HP + SV KA G WK +S+
Sbjct: 192 RGGGKVKAKDENAPKRSMSAYFFFVSDFR----KKHP-DLSVTETSKAAGAAWKELSDEM 246
Query: 85 KAPYVAKAEKRKVEYEKDM 103
K PY A A+K K Y+++M
Sbjct: 247 KKPYEAMAQKDKERYQREM 265
>gi|196005089|ref|XP_002112411.1| hypothetical protein TRIADDRAFT_56397 [Trichoplax adhaerens]
gi|190584452|gb|EDV24521.1| hypothetical protein TRIADDRAFT_56397 [Trichoplax adhaerens]
Length = 253
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYK-KDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP+KPKRP +A+F F+ EFR+ K K + K + ++ GEKW++M+ A+KA Y A
Sbjct: 135 DPDKPKRPQTAYFYFLAEFRKAMKAKGVIEGKKLTSLS---GEKWRAMTPAEKAKYEAMV 191
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEESEK 119
K K Y+++M Y +++ ++ E+ K
Sbjct: 192 TKDKERYQREMDAYRKKKGIKDGEASK 218
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98
K+P SA+ F R++ KK + + K G +W++M+ + K PY A + K
Sbjct: 63 KKPKSAYIFFTTSLRQRLKKSGREMPKAHEIAKMCGSEWRAMTASQKKPYDELAARDKQR 122
Query: 99 YEKDMKNYNRR 109
Y +++ + ++
Sbjct: 123 YMEEISKFRKK 133
>gi|156083745|ref|XP_001609356.1| high mobility group protein-like protein NHP1 [Babesia bovis T2Bo]
gi|730136|sp|P40632.1|NHP1_BABBO RecName: Full=High mobility group protein homolog NHP1
gi|344189439|pdb|2LHJ|A Chain A, Nmr Structure Of The High Mobility Group Protein-Like
Protein Nhp1 From Babesia Bovis T2bo (Baboa.00841.A)
gi|155890|gb|AAA27799.1| non-histone protein [Babesia bovis]
gi|154796607|gb|EDO05788.1| high mobility group protein-like protein NHP1 [Babesia bovis]
Length = 97
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEAD 84
R+ KA KDPN PKR S++ F +E R + ++P+ K VAA+GK G W ++S+ +
Sbjct: 11 RRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEE 70
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQ 110
K PY +++ +V YE++ Y +R+
Sbjct: 71 KKPYERMSDEDRVRYEREKAEYAQRK 96
>gi|340383933|ref|XP_003390470.1| PREDICTED: FACT complex subunit SSRP1-like, partial [Amphimedon
queenslandica]
Length = 410
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PK+P S++ ++++E R KK HP+ S+ + K G+ WK + DK+ + KA+
Sbjct: 277 DPNCPKKPLSSYMLWLQEMRPSLKKKHPE-LSITEMSKKAGQLWKELK--DKSKWEEKAK 333
Query: 94 KRKVEYEKDMKNYNR 108
K K +Y DMK Y R
Sbjct: 334 KLKEQYLIDMKEYER 348
>gi|195382183|ref|XP_002049810.1| GJ20542 [Drosophila virilis]
gi|194144607|gb|EDW61003.1| GJ20542 [Drosophila virilis]
Length = 397
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PK P +++ FM + REQ +++HP N++ K GE+W ++E KAPY+ A K K
Sbjct: 83 PKMPLNSYVRFMNDRREQLRREHP-NRTALEHTKMIGEEWHQLTEDRKAPYMEAAAKDKA 141
Query: 98 EYEKDMKNYNRRQPE 112
Y++ M + + PE
Sbjct: 142 LYQEQMHKFLKEHPE 156
>gi|126274287|ref|XP_001387507.1| Nonhistone chromosomal protein 6A [Scheffersomyces stipitis CBS
6054]
gi|126213377|gb|EAZ63484.1| Nonhistone chromosomal protein 6A, partial [Scheffersomyces
stipitis CBS 6054]
Length = 85
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK+ + KDP+ PKR SA+ F E R+ + ++P S VGK GEKWK+++ +K
Sbjct: 6 RKATRKKKDPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALTGEEK 64
Query: 86 APYVAKAEKRKVEYEKDMKNY 106
PY KAE K YEK+ Y
Sbjct: 65 GPYENKAEADKKRYEKEKAEY 85
>gi|444720594|gb|ELW61376.1| High mobility group protein B3 [Tupaia chinensis]
Length = 124
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86
K GK KD N PKRP S FF+F EF + K + S+ V K GE W ++S++ K
Sbjct: 8 KEGKKKKDSNAPKRPPSGFFLFFSEFHPKIKSSN-HGISIRDVAKTLGEMWNNLSDSKKQ 66
Query: 87 PYVAKAEKRKVEYEKDMKNY 106
Y+ K K K EKD+ ++
Sbjct: 67 SYITKPAKLKERDEKDVTDF 86
>gi|444518100|gb|ELV11958.1| High mobility group protein B1 [Tupaia chinensis]
Length = 162
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
PN PKRP SAFF+F E+R + K +HP + S+ V K GE W + + DK P KA K
Sbjct: 92 PNVPKRPPSAFFLFCSEYRPKIKGEHP-DLSIGDVEKKLGEVWNNAAADDKQPCEKKAAK 150
Query: 95 RKVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 151 LKEKYEKDIAAY 162
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE+++K HP + + E+WK+MS +K A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHRKKHPDALVDFSEFSQKCSERWKTMSAEEKGKLEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++M+ Y
Sbjct: 65 KVDKARYEREMRTY 78
>gi|392300930|gb|EIW12019.1| Nhp6bp [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 162
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GE+WK
Sbjct: 71 KQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENP-DVTFGQVGRILGERWK 129
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
+++ +K PY +KA+ K YE + + YN
Sbjct: 130 ALTAEEKQPYESKAQADKKRYESEKELYN 158
>gi|395329999|gb|EJF62384.1| hypothetical protein DICSQDRAFT_161203 [Dichomitus squalens
LYAD-421 SS1]
Length = 662
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFR---EQYKKDHPKNKSVAAVGKAGGEKWKS 79
KAG+ KDPN PK+P SA+F+F++ R E K+ KW+S
Sbjct: 512 KAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRSDPELVKEVFGDETETTKQSVLAAGKWRS 571
Query: 80 MSEADKAPYVAKAEKRKVEYEKDMKNY 106
M++ ++ P++A+AE+ K+EYE K Y
Sbjct: 572 MTDEERKPFLAQAEQEKLEYESARKMY 598
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 6 SKSDTRNAKLSVNKKP-------AKAGRKSGKAAKDPNK-----PKRPASAFFVFMEEFR 53
S+ D R+A + K+P A+A + ++ P K PK SA+ ++ ++
Sbjct: 379 SEHDDRDATVRRKKRPMEDDEMDAQAQTREKRSESPPLKSVLRPPKLAPSAWQLYFTDWI 438
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEE 113
++++ K +VA K G+++ +S K PY +++ K E+D+ Y R +
Sbjct: 439 QRHQASSHKKLNVAQAAKEAGQEYAKLSADQKEPYRRRSQALKEARERDLNAYMRTLTPD 498
Query: 114 EEESEKS 120
+ + E +
Sbjct: 499 DIKRENA 505
>gi|194068385|dbj|BAG55013.1| high mobility group 1 protein [Saccostrea kegaki]
Length = 201
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
A+ GRK + AKDPNKPKR SA+F F+ + RE K +A K KW M+
Sbjct: 5 AEGGRK--RKAKDPNKPKRSTSAYFYFLGKMREDAKSSGKPITKIAEFTKESSAKWAKMT 62
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNYNRRQPEE 113
+ DK P+ KA K Y+ +M Y + P E
Sbjct: 63 DKDKEPFNKKAAADKKRYDAEMAVYKGKDPSE 94
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 12 NAKLSVNKK--PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
N K + +KK A+ GK + KPKRP SA+F F+ +FRE+ K + +K +
Sbjct: 70 NKKAAADKKRYDAEMAVYKGKDPSEAGKPKRPQSAYFCFLADFREKMKGKNIDHKEII-- 127
Query: 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
K GE W+++ + +K P+ A+K + +YE+ + ++ R
Sbjct: 128 -KMAGEAWRNLDDNEKKPFEKLAQKEQEKYEQALADWRR 165
>gi|409049822|gb|EKM59299.1| hypothetical protein PHACADRAFT_249698 [Phanerochaete carnosa
HHB-10118-sp]
Length = 580
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR-------EQYKKDHPKNK-SVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ R E + + K SV A
Sbjct: 426 AQRKAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRSDAALVLEVFGDETETTKQSVLAAA- 484
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
KW+SM++ ++ P++A+AE+ K+EYE K Y
Sbjct: 485 ----KWRSMTDEERKPFLAQAEQEKLEYEAARKMY 515
>gi|355757722|gb|EHH61247.1| hypothetical protein EGM_19210, partial [Macaca fascicularis]
Length = 185
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K D N KRP S FF+F EF HPK KS G + G+ K +
Sbjct: 80 PAKGGKKKN----DSNTFKRPPSGFFLFCSEF-------HPKIKSTNP-GISIGDVTKKL 127
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
E +K PY+ KA K K EYEKD+ Y
Sbjct: 128 GEIEKQPYIIKAAKLKEEYEKDVAEY 153
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP K K SA+ F++ RE++KK +P+ + A K +WK+MS +K+ + A
Sbjct: 5 DPKKLKGKVSAYAFFVQMCREEHKKKYPEVPVNFAEFSKKCSRRWKTMSRKEKSKFDELA 64
Query: 93 EKRKVEYEKDMKNY 106
+ KV Y+++MK+Y
Sbjct: 65 KTDKVHYDQEMKDY 78
>gi|355757371|gb|EHH60896.1| hypothetical protein EGM_18788, partial [Macaca fascicularis]
Length = 189
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E + K +HP SV+ V K GE W +E DK PY KA
Sbjct: 86 KDPNAPKRPPLAFFMFSSEDCPKIK-EHP-GLSVSDVAKKLGEMWNYTAEDDKHPYEKKA 143
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ +
Sbjct: 144 VKLKEKYEKDIAAF 157
>gi|68061725|ref|XP_672863.1| high mobility group protein [Plasmodium berghei strain ANKA]
gi|68076125|ref|XP_679982.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490279|emb|CAI01706.1| high mobility group protein, putative [Plasmodium berghei]
gi|56500842|emb|CAH99000.1| hypothetical protein PB001601.02.0 [Plasmodium berghei]
Length = 98
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP PKR SA+ ++++ R + ++ P+ K VA VGK GE W ++ A KAPY KA
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIQERPELAKEVAQVGKLIGEAWGQLTPAQKAPYEKKA 79
Query: 93 EKRKVEYEKDMKNYNR 108
E KV Y K+++ Y +
Sbjct: 80 ELDKVRYSKEIEEYRK 95
>gi|302847869|ref|XP_002955468.1| hypothetical protein VOLCADRAFT_76727 [Volvox carteri f.
nagariensis]
gi|300259310|gb|EFJ43539.1| hypothetical protein VOLCADRAFT_76727 [Volvox carteri f.
nagariensis]
Length = 645
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PK+ + F F RE+ K ++P + +GK GE+WK M +KAPY A
Sbjct: 550 KDPNAPKKNLTGFMYFSNANREKVKAENP-GIAFGEIGKMLGERWKGMGADEKAPYEQMA 608
Query: 93 EKRKVEYEKDMKNYNRR 109
K KV Y + MK Y R
Sbjct: 609 AKDKVRYAEAMKAYKER 625
>gi|405977513|gb|EKC41956.1| High mobility group protein B3 [Crassostrea gigas]
Length = 202
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
AKDPN+PKR SA+F F+ + RE KK +A K KW M+E DK P+ K
Sbjct: 14 AKDPNRPKRATSAYFFFLSKMREDSKKAGKPITKIAEFTKECSAKWAKMNEKDKEPFAKK 73
Query: 92 AEKRKVEYEKDMKNYNRRQPEE 113
A K Y+ +M Y + P +
Sbjct: 74 ALTDKNRYDAEMAIYKGKDPND 95
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 33 KDPN---KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
KDPN KPKRP SA+F F+ +FR + K +K + K GE W+++ + +K P+
Sbjct: 91 KDPNDAGKPKRPQSAYFCFLADFRLKMKGKDIDHKEII---KMAGEAWRNLDDNEKKPFE 147
Query: 90 AKAEKRKVEYEKDMKNYNR 108
A+K + +YE+ + ++ +
Sbjct: 148 KLAQKEQEKYEQALSDWRK 166
>gi|393246429|gb|EJD53938.1| hypothetical protein AURDEDRAFT_110629 [Auricularia delicata
TFB-10046 SS5]
Length = 486
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 13/97 (13%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR------EQYKKDHPKNKSVAAVGKAG 73
A RK+GK+ KDPN PK+P SA+F+F+++ R ++ D + + + A
Sbjct: 348 AQRKAGKSRKGNLKDPNAPKKPLSAYFMFLQKIRSSPQLVQEVFGDETETTKQSVLAAA- 406
Query: 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
KW+S+S+A+K P++ +AE+ K+ YE + Y R
Sbjct: 407 --KWRSLSDAEKKPFLVQAEQDKIAYENARRLYEDRH 441
>gi|444729306|gb|ELW69730.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP AFF+F E+ + + +HP + V K GE W + + D PY KA
Sbjct: 39 KDPNAPKRPPLAFFLFCSEYHPKIRGEHP-GLYIGDVAKKLGEMWTNTAADDTQPYEKKA 97
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 98 AKLKEKYEKDIAAY 111
>gi|358337868|dbj|GAA37121.2| high mobility group protein B1, partial [Clonorchis sinensis]
Length = 378
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP PKR SAFF F + FR + + +HP K V+ + K G +W+ + DK Y
Sbjct: 99 TKDPAMPKRSWSAFFFFCDAFRSKIRNEHPDWK-VSDIAKELGRRWEECT--DKEKYERH 155
Query: 92 AEKRKVEYEKDMKNY--------NRRQPEEEEESEKSMSEV 124
A+ K+ YE+DM+ Y R + EE+E+ E S V
Sbjct: 156 AQNDKLRYEQDMQKYKAGIYVATKRARVEEDEDIEPSCVTV 196
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KD N+PK P SA+ F++ RE+++K HP +N + K EKWK MS + +
Sbjct: 9 VKDKNRPKHPMSAYACFVQVIREEHRKKHPNENVIFSEFSKKCAEKWKQMSNEQRRCFEE 68
Query: 91 KAEKRKVEYEKDMKNY 106
A+ + ++M +Y
Sbjct: 69 MAKLDLDRFNREMAHY 84
>gi|56756178|gb|AAW26264.1| SJCHGC08557 protein [Schistosoma japonicum]
Length = 177
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP+ PKR SAFF F + FR + + +HP K V+ + K G +W+ S DK Y +
Sbjct: 93 IKDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECS--DKEKYEQR 149
Query: 92 AEKRKVEYEKDMKNY 106
A+ K+ YE+DM+ Y
Sbjct: 150 AQNDKLRYEQDMQKY 164
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KD N+PK P + F++ RE+++K HP +N + K EKWK M+ + +
Sbjct: 3 VKDKNRPKPPMKPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMNMEQRKCFEE 62
Query: 91 KAEKRKVEYEKDMKNY 106
A+ + ++M +Y
Sbjct: 63 MAKLDTERFNREMAHY 78
>gi|397482786|ref|XP_003812597.1| PREDICTED: high mobility group protein B4 [Pan paniscus]
Length = 177
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W ++++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTVTDL 137
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRR 109
+K PY +A + +Y ++++ Y ++
Sbjct: 138 EKHPYEQRAALLRAKYFEELELYRKQ 163
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAA--VGKAGGEKWKSMSEADKAPYVAKAEK 94
KPK S++ F+ +R ++K+ P N V + EKW+S+S+ +KA Y A A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQP-NTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKL 66
Query: 95 RKVEYEKDMKNY 106
K Y+++M NY
Sbjct: 67 DKARYQEEMMNY 78
>gi|70953373|ref|XP_745792.1| high mobility group protein [Plasmodium chabaudi chabaudi]
gi|56526224|emb|CAH87922.1| high mobility group protein, putative [Plasmodium chabaudi
chabaudi]
Length = 98
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP PKR SA+ ++++ R + ++ P+ K VA VGK GE W ++ A KAPY KA
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIQERPELAKEVAQVGKLIGEAWGQLTPAQKAPYEKKA 79
Query: 93 EKRKVEYEKDMKNYNR 108
E KV Y K+++ Y +
Sbjct: 80 ELDKVRYSKEIEEYKK 95
>gi|403293162|ref|XP_003937591.1| PREDICTED: high mobility group protein B4 [Saimiri boliviensis
boliviensis]
Length = 254
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 142 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSATTDL 200
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEK 119
+K PY +A + +Y ++++ Y +++ + ++ + +
Sbjct: 201 EKQPYEQRAALLRAKYFEELELYRKQRKQCKQRTTR 236
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVA--AVGKAGGEKWKSMSEADKAPYVAKAEK 94
KPK S++ F+ +R ++K+ P N V + EKW+S+S+ +KA Y A A+
Sbjct: 71 KPKANVSSYIHFLLNYRNKFKEQQP-NTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKL 129
Query: 95 RKVEYEKDMKNY 106
K Y+++M NY
Sbjct: 130 DKARYQEEMMNY 141
>gi|440800724|gb|ELR21759.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 128
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP + + F E R + K+D+P + + K KWK MSE +K PY+ A+
Sbjct: 28 DPNAPKRPKTGYIFFSAEERVKVKEDNP-DLGFGDITKQVSAKWKDMSEEEKEPYLTLAK 86
Query: 94 KRKVEYEKDMKNY 106
K K YEK+M Y
Sbjct: 87 KDKERYEKEMSKY 99
>gi|118792222|ref|XP_001238271.1| AGAP012334-PA [Anopheles gambiae str. PEST]
gi|116116797|gb|EAU75768.1| AGAP012334-PA [Anopheles gambiae str. PEST]
Length = 111
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
KPKRP SA+ +++ REQ KK++P K V + K GGE W+ M DK+ + KA K K
Sbjct: 4 KPKRPLSAYMLWLNSAREQIKKENPGIK-VTEIAKKGGELWRGMK--DKSEWEYKAAKMK 60
Query: 97 VEYEKDMKNYNR 108
EY K M+++ R
Sbjct: 61 DEYNKQMQDFER 72
>gi|242389922|dbj|BAH80451.1| putative HMG1 protein [Lentinula edodes]
Length = 560
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR---EQYKKDHPKNKSVAAVGKAGGEK 76
A RK+GK+ KDPN PK+P SA+F+F++ R + +K K
Sbjct: 426 AQRKAGKSRKSNIKDPNAPKKPLSAYFMFLQRIRANPQLVQKVFGDETETTKQSVLAAAK 485
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++ ++ P++A+AE+ K+EYE + Y
Sbjct: 486 WRSMTDDERKPFLAQAEQEKMEYEAARRLY 515
>gi|395857418|ref|XP_003801091.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 197
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP S+ V K G W + + DK PY KA
Sbjct: 132 KDPNAPKRPLSAFFLFCSEYCPKSKGEHP-GLSIGEVAKKLGVMWNNTAADDKQPYEKKA 190
Query: 93 EKRKV 97
K K+
Sbjct: 191 AKLKL 195
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 28 SGKAAK----DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSE 82
SGK K DP K + S+ F++ E++KK HP + + + K E+WK+MS
Sbjct: 37 SGKITKHGKGDPKKLRGKMSSCAFFVQTSWEEHKKKHPGASVTFSEFSKKCSERWKTMSG 96
Query: 83 ADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
++ + A+ K YE++MK Y R+ E
Sbjct: 97 KERGKFEDMAKADKAPYEREMKTYILRKGE 126
>gi|47497872|dbj|BAD20056.1| putative embryogenic callus protein 98b [Oryza sativa Japonica
Group]
gi|50252043|dbj|BAD27975.1| putative embryogenic callus protein 98b [Oryza sativa Japonica
Group]
gi|125581537|gb|EAZ22468.1| hypothetical protein OsJ_06136 [Oryza sativa Japonica Group]
Length = 504
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
+P SA+FV+ ++ R + K+V +G+ GE+WK+MSEA+KAP+ A A K++ EY
Sbjct: 287 QPMSAYFVYTQQRRAALVAE---KKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEY 343
Query: 100 EKDMKNYNRR 109
+ +M Y +R
Sbjct: 344 QVEMAAYRQR 353
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+PK+PAS+F +F +E R Q ++ P S + + KWK + EA+K + KA
Sbjct: 410 DPNRPKKPASSFLLFSKEARRQLAEERPGVAS-STLTALVSVKWKELGEAEKQAWNGKAA 468
Query: 94 KRKVEYEKDMKNYNR 108
+ Y++DM+ Y +
Sbjct: 469 EAMAAYKRDMEEYTK 483
>gi|125538867|gb|EAY85262.1| hypothetical protein OsI_06634 [Oryza sativa Indica Group]
Length = 504
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
+P SA+FV+ ++ R + K+V +G+ GE+WK+MSEA+KAP+ A A K++ EY
Sbjct: 287 QPMSAYFVYTQQRRAALVAE---KKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEY 343
Query: 100 EKDMKNYNRR 109
+ +M Y +R
Sbjct: 344 QVEMAAYRQR 353
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+PK+PAS+F +F +E R Q ++ P S + + KWK + EA+K + KA
Sbjct: 410 DPNRPKKPASSFLLFSKEARRQLAEERPGVAS-STLTALVSVKWKELGEAEKQAWNGKAA 468
Query: 94 KRKVEYEKDMKNYNR 108
+ Y++DM+ Y +
Sbjct: 469 EAMAAYKRDMEEYTK 483
>gi|390601122|gb|EIN10516.1| hypothetical protein PUNSTDRAFT_132606 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 619
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 19/94 (20%)
Query: 26 RKSGKA----AKDPNKPKRPASAFFVFMEEFREQ---------YKKDHPKNKSVAAVGKA 72
RK+GK+ KDPN PK+P SA+F+F++ R ++ + K +AA
Sbjct: 455 RKAGKSRKGNIKDPNAPKKPLSAYFMFLQAIRSDPGLVREVFGHETETTKQSVLAA---- 510
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
KW+SM++ ++ P++A+AE+ K+EYE K Y
Sbjct: 511 --SKWRSMTDEERKPFLAQAEREKLEYETARKIY 542
>gi|332808386|ref|XP_513298.3| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4 [Pan
troglodytes]
Length = 186
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W ++++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTVTDL 137
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRR 109
+K PY +A + +Y ++++ Y ++
Sbjct: 138 EKHPYEQRAALLRAKYFEELELYRKQ 163
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAA--VGKAGGEKWKSMSEADKAPYVAKAEK 94
KPK S++ F+ +R ++K+ P N V + EKW+S+S+ +KA Y A A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQP-NTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKL 66
Query: 95 RKVEYEKDMKNY 106
K Y+++M NY
Sbjct: 67 DKARYQEEMMNY 78
>gi|256090348|ref|XP_002581158.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
gi|350646061|emb|CCD59339.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
Length = 293
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP+ PKR SAFF F + FR + + +HP K V+ + K G +W+ S DK Y +
Sbjct: 93 IKDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECS--DKEKYERR 149
Query: 92 AEKRKVEYEKDMKNY 106
A+ K+ YE+DM+ Y
Sbjct: 150 AQNDKLRYEQDMEKY 164
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KD N+PK P + + F++ RE+++K HP +N + K EKWK M+ + +
Sbjct: 3 VKDKNRPKPPMTPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMNMEQRKCFEE 62
Query: 91 KAEKRKVEYEKDMKNY 106
A+ + ++M +Y
Sbjct: 63 MAKLDTERFNREMAHY 78
>gi|223649078|gb|ACN11297.1| FACT complex subunit SSRP1 [Salmo salar]
Length = 711
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KD N PKRP S++ +++ RE+ K ++P S+ + K GE WK + + DK +
Sbjct: 535 KKQKDTNAPKRPMSSYMLWLNSSRERIKSENP-GISITEISKKAGEMWKQIGKEDKEEWD 593
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE+ K YEK MK Y
Sbjct: 594 GKAEEAKKNYEKAMKEY 610
>gi|118371960|ref|XP_001019178.1| Nonhistone chromosomal protein LG-1, putative [Tetrahymena
thermophila]
gi|89300945|gb|EAR98933.1| Nonhistone chromosomal protein LG-1, putative [Tetrahymena
thermophila SB210]
Length = 157
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
+K P PKRP SAFF+F + EQ KK++P N + + EKWK++ E +K Y
Sbjct: 63 SKQPAPPKRPLSAFFLFKQHNYEQVKKENP-NAKITELTSMIAEKWKAVGEKEKKKYETL 121
Query: 92 AEKRKVEYEKDMKNYNRR 109
+ K +YEKDM+ Y ++
Sbjct: 122 QSEAKAKYEKDMQAYEKK 139
>gi|268575214|ref|XP_002642586.1| C. briggsae CBR-HMG-4 protein [Caenorhabditis briggsae]
Length = 696
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+F + R K+D SVA V K G KWK++ DK + AKAE
Sbjct: 554 DPNAPKRAQSAYFHWFNANRLSLKED---GDSVADVAKKAGAKWKTLGAEDKKEWEAKAE 610
Query: 94 KRKVEYEKDMKNYNR 108
K K YE +MK Y +
Sbjct: 611 KDKTRYETEMKEYRK 625
>gi|321461212|gb|EFX72246.1| hypothetical protein DAPPUDRAFT_201206 [Daphnia pulex]
Length = 759
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KD N+PKRP S++ +++ + REQ KKD+P SV + K GGE W+ + D++ + AKA
Sbjct: 578 KDANRPKRPQSSYMLWLNDSREQIKKDNP-GISVTDLMKKGGEMWQKVE--DRSIWEAKA 634
Query: 93 EKRKVEYEKDMKNYN 107
+ K Y+K MK Y
Sbjct: 635 KVAKEAYDKAMKEYT 649
>gi|326432726|gb|EGD78296.1| hypothetical protein PTSG_09362 [Salpingoeca sp. ATCC 50818]
Length = 1279
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
A P KPKR SAFF F++E R + P SV + G+KWK +S+ KAPY+
Sbjct: 387 ASAPPKPKRYTSAFFYFLKEQR----NNDPAPLSVTESSRVFGQKWKELSDEAKAPYLEL 442
Query: 92 AEKRKVEYEKDMKNYNR---RQPEEEEESEKSMSEVNDEDDDEEGSGEVFF 139
+ + Y +DM+ Y E + SMS++ S +FF
Sbjct: 443 ERRDRQRYARDMEKYKELLVAHAREHGATTPSMSKLISNKPKRGRSAYIFF 493
>gi|410910282|ref|XP_003968619.1| PREDICTED: high mobility group-T protein-like isoform 1 [Takifugu
rubripes]
Length = 196
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F E R + K ++P ++ K GE W
Sbjct: 76 NYVPPKGHKK--KRFKDPNAPKRPPSAFFLFCAELRPKVKSENP-GLTIGDTAKKLGEMW 132
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
S + +K PY KA K K +Y+KD+ Y
Sbjct: 133 NSKTAEEKQPYEKKAAKLKEKYDKDIVAY 161
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP KP+ S++ F++ RE++KK HP + + A K E+WK+MS +K +
Sbjct: 3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSPKEKGKFEDM 62
Query: 92 AEKRKVEYEKDMKNY 106
A++ KV YE++MKNY
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|401885246|gb|EJT49369.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 2479]
gi|406694772|gb|EKC98094.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 8904]
Length = 108
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 14/90 (15%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+KK AK G+K DPNKPKR SA+ F++++RE+ K ++P + +VG+ G KW
Sbjct: 9 DKKVAKRGKK------DPNKPKRALSAYMFFVQDWRERIKSENP-DADFGSVGRLLGAKW 61
Query: 78 KSMSEADKAPYVAKAE-------KRKVEYE 100
+ MS ++K PY KA+ K K EY+
Sbjct: 62 QEMSASEKKPYEDKAQADKDRAAKEKAEYD 91
>gi|195123073|ref|XP_002006034.1| GI20809 [Drosophila mojavensis]
gi|193911102|gb|EDW09969.1| GI20809 [Drosophila mojavensis]
Length = 388
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97
PK P +++ FM + REQ +++HP N++ K GE+W +++ KAPY+ A K K
Sbjct: 64 PKMPLNSYVRFMNDRREQLRREHP-NRTALEHTKMIGEEWHQLTDERKAPYLEAAAKDKA 122
Query: 98 EYEKDMKNYNRRQPE 112
Y++ M + + PE
Sbjct: 123 LYQEQMHKFLKEHPE 137
>gi|194755944|ref|XP_001960239.1| GF11622 [Drosophila ananassae]
gi|190621537|gb|EDV37061.1| GF11622 [Drosophila ananassae]
Length = 111
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96
+PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+ + DK+ + KA K K
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKSEWEQKAIKMK 61
Query: 97 VEYEKDMKNY 106
+Y K +K Y
Sbjct: 62 EDYNKAVKEY 71
>gi|345780695|ref|XP_851529.2| PREDICTED: high mobility group protein B4 [Canis lupus familiaris]
Length = 193
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G+K + +DP P+RP S+F +F ++ Q K+++P SV V KA G W S A
Sbjct: 81 VGKKKKRRKRDPQAPRRPPSSFLIFCQDHYAQLKRENP-TWSVVQVAKASGRMWSVTSGA 139
Query: 84 DKAPYVAKAEKRKVEYEKDMKNY 106
+K PY +A + Y+++++ Y
Sbjct: 140 EKQPYEQRAAVLRARYQEELEVY 162
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+PK S++ F+ +R ++K+ P + EKW+S+S+ +KA Y A A+
Sbjct: 10 RPKVNVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 96 KVEYEKDMKNY 106
K Y+++M NY
Sbjct: 70 KARYQEEMMNY 80
>gi|229368114|gb|ACQ59037.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 206
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K + P ++ V K GE W + D+ P+ KA
Sbjct: 89 KDPNAPKRPPSAFFIFCAEYRPKVKGETP-GATIGDVAKRLGEMWNGTASEDRQPFEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
K K +YEK++ Y
Sbjct: 148 AKLKEKYEKEVAAY 161
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
K+ KPK S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 2 VKELGKPKGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSLKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A + K YE++M +Y
Sbjct: 62 LARQDKARYEREMMSY 77
>gi|444707322|gb|ELW48604.1| High mobility group protein B4 [Tupaia chinensis]
Length = 189
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
GR+ + +DP P+RP S+F +F ++ Q K+++P + +V V KA G+ W M+
Sbjct: 81 VGRRRKRRKRDPQAPRRPPSSFILFCQDHYAQLKRENP-SWTVVQVAKASGKMWTVMTAV 139
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVN 125
+K PY +A + Y+++++ Y R+Q + +E+ S ++
Sbjct: 140 EKQPYEQRAALLRARYQEELEVY-RKQRQAWKENHASAGNLH 180
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+PK S++ F+ +R ++K+ P + EKWKS+S+ +KA Y A A+
Sbjct: 10 RPKVNVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWKSISKHEKAKYEALAKLD 69
Query: 96 KVEYEKDMKNY 106
K Y+++M NY
Sbjct: 70 KARYQEEMMNY 80
>gi|297665615|ref|XP_002811141.1| PREDICTED: high mobility group protein B4 [Pongo abelii]
Length = 189
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G+ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 79 VGKTKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSAATDL 137
Query: 84 DKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVN 125
+K PY +A + +Y ++++ Y +++ + + MS N
Sbjct: 138 EKHPYEQRAALLRAKYFEELELYRKQRKQCNARKKYRMSARN 179
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVA--AVGKAGGEKWKSMSEADKAPYVAKAEK 94
KPK S++ F+ +R ++K+ P N V + EKW+S+S+ +KA Y A A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQP-NTYVGFEEFSRKCSEKWRSISKHEKAKYEALAKL 66
Query: 95 RKVEYEKDMKNY 106
K Y+++M NY
Sbjct: 67 DKARYQEEMMNY 78
>gi|324514253|gb|ADY45807.1| FACT complex subunit SSRP1 [Ascaris suum]
Length = 91
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K AKDPN PKR SAFF +M+E R++ KK VA V KA G +W +S DK+ +
Sbjct: 12 KKAKDPNAPKRAMSAFFFWMQENRDRLKKP---GMGVADVAKAAGAEWAKLS--DKSKWE 66
Query: 90 AKAEKRKVEYEKDMKNY 106
KAE+ K YE+D+ Y
Sbjct: 67 KKAEEDKKRYERDLVAY 83
>gi|358060355|dbj|GAA93760.1| hypothetical protein E5Q_00406 [Mixia osmundae IAM 14324]
Length = 119
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+KSGK KDPN PKRP SA+ + ++ R Q K+D+P + S +GK G +WK + E++K
Sbjct: 35 KKSGKKEKDPNAPKRPLSAYMFYSQDKRTQVKEDNP-DASFGELGKILGAQWKDLDESEK 93
Query: 86 APYVAKAEKRKVEY 99
Y A + K Y
Sbjct: 94 KQYNDMATRDKERY 107
>gi|426215132|ref|XP_004001831.1| PREDICTED: high mobility group protein B4 [Ovis aries]
Length = 196
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
GR+ + +DP+ P+RP S+F +F ++ Q K ++P + SV V KA G+ W + ++ D
Sbjct: 82 GRRKKRRKRDPHAPRRPPSSFLLFCQDHYAQLKSENP-SWSVVQVAKASGKMWSAKTDVD 140
Query: 85 KAPYVAKAEKRKVEYEKDMKNY-NRRQPEEEEESEKSMSEV----NDEDDDEEGSG 135
K PY +A + +Y +++ Y N+ +P + E + ++ E D +GS
Sbjct: 141 KQPYEQRAALLRAKYREELSVYRNQFKPRKMRLQELATNQCRGLEQAESDTTDGSN 196
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAK 91
+D KPK S++ F+ +R ++K+ P + EKW+S+S+ +KA Y A
Sbjct: 6 RDHLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEAL 65
Query: 92 AEKRKVEYEKDMKNY 106
A+ K Y+++M NY
Sbjct: 66 AKLDKARYQEEMMNY 80
>gi|94966915|ref|NP_001035652.1| high mobility group protein B4 [Bos taurus]
gi|119370723|sp|Q32L34.1|HMGB4_BOVIN RecName: Full=High mobility group protein B4
gi|81673105|gb|AAI09791.1| High-mobility group box 4 [Bos taurus]
gi|296488916|tpg|DAA31029.1| TPA: high mobility group protein B4 [Bos taurus]
Length = 194
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
GR+ + +DP+ P+RP S+F +F ++ Q K ++P + SV V KA G+ W + ++ D
Sbjct: 80 GRRKKRRKRDPHAPRRPPSSFLLFCQDHYAQLKSENP-SWSVVQVAKASGKMWSAKTDVD 138
Query: 85 KAPYVAKAEKRKVEYEKDMKNY----NRRQPEEEEESEKSMSEVND-EDDDEEGSG 135
K PY +A + +Y +++ Y N R+ +E + E E D +GS
Sbjct: 139 KQPYEQRAALLRAKYREELSVYRNQFNARKTCLQESATNQCREFEQAESDTTDGSN 194
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAK 91
+D KPK S++ F+ +R ++K+ P + EKW+S+S+ +KA Y A
Sbjct: 4 RDQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEAL 63
Query: 92 AEKRKVEYEKDMKNY 106
A+ K Y+++M NY
Sbjct: 64 AKLDKARYQEEMMNY 78
>gi|312385332|gb|EFR29859.1| hypothetical protein AND_00900 [Anopheles darlingi]
Length = 730
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D N PKRPA+AF ++M R+Q +KD+P S+ + K GGE WK + DK + AKA
Sbjct: 556 DANAPKRPATAFMLWMNATRDQIRKDNP-GLSITEIAKKGGELWKDLK--DKKDWEAKAA 612
Query: 94 KRKVEYEKDMKNY 106
K K Y + M Y
Sbjct: 613 KAKENYTEAMAAY 625
>gi|281202543|gb|EFA76745.1| PHD zinc finger-containing protein [Polysphondylium pallidum PN500]
Length = 604
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K A+ P K K + FF ++ E RE KK+ P + S++ + K G KWK+M+E +KAPY
Sbjct: 200 KKAEIP-KIKSAVTPFFHYLNENREIEKKNQP-DMSLSEISKLLGNKWKAMNEEEKAPYF 257
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEEE 115
K++ K YE ++ YNR+ E E
Sbjct: 258 EKSQDDKRRYEVEIVEYNRKIKEVAE 283
>gi|401623234|gb|EJS41340.1| nhp6ap [Saccharomyces arboricola H-6]
Length = 93
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VGK GEKWK+++ +K PY AKA+
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENP-DITFGQVGKKLGEKWKALTPEEKLPYEAKAQ 75
Query: 94 KRKVEYEKDMKNYN 107
K YE + + YN
Sbjct: 76 ADKKRYESEKELYN 89
>gi|392592955|gb|EIW82281.1| HMG-box [Coniophora puteana RWD-64-598 SS2]
Length = 279
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEF-------REQYKKDHPKNK-SVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ RE + + K SV A
Sbjct: 150 AQRKAGKSRRSNLKDPNAPKKPLSAYFMFLQRIRSDPALVREVFGDEQETTKQSVLAAA- 208
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
KW+ MS+ ++ P++A+AE+ K+EYE + Y
Sbjct: 209 ----KWRDMSDDERKPFLARAEQEKLEYEAARRLY 239
>gi|151301198|ref|NP_001093087.1| mobility group protein 1B [Bombyx mori]
gi|95102634|gb|ABF51255.1| mobility group protein 1B [Bombyx mori]
Length = 119
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
+KPKRP SA+ +++ REQ K ++P + V + K GGE WKSM DK + KA K
Sbjct: 3 DKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMK--DKTEWEQKAAKA 59
Query: 96 KVEYEKDMKNY 106
K +Y KD+++Y
Sbjct: 60 KEQYAKDLESY 70
>gi|23394916|gb|AAN31640.1|AF484963_1 high mobility group protein 1 [Biomphalaria glabrata]
Length = 215
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPKRP +A+F+F+ ++R + ++K + K GE+W+S+S DK PY KA
Sbjct: 96 DPNKPKRPPTAYFLFLADYRIRMANKGIEHKELL---KMAGEEWRSLSNEDKKPYEKKAL 152
Query: 94 KRKVEYEKDMKNYNR 108
+ +YE M Y +
Sbjct: 153 EESKKYESAMTEYRK 167
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G+ S K KD NKPKR SA+F F+ + R++ K +A K EKWK++S
Sbjct: 9 GKNSKKKVKDVNKPKRATSAYFFFLAQCRKEAAKAGKAPTKIAEFTKEASEKWKALSADK 68
Query: 85 KAPYVAKAEKRKVEYEKDMKNY 106
K P+ A A K YE +M Y
Sbjct: 69 KKPFEAAAADDKRRYETEMAVY 90
>gi|1083056|pir||B61611 nonhistone chromosomal protein HMG-2 - bovine (fragments)
Length = 186
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 85 NAPKRPPSAFFLFSAEHRPKIKAEHP-GLSIGDTAKKLGEMWSQQSAKDKQPYEQKASKL 143
Query: 96 KVEYEK 101
K +YEK
Sbjct: 144 KEKYEK 149
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKP+ S++ F++ RE++KK HP A+V + E+WK+MS +K+ + A+
Sbjct: 4 DPNKPRGKMSSYAFFVQTSREEHKKKHPD----ASVNFS--ERWKTMSAKEKSKFEDMAK 57
Query: 94 KRKVEYEKDMKNY 106
K Y+++MKNY
Sbjct: 58 SDKARYDREMKNY 70
>gi|291414887|ref|XP_002723687.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 209
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMRSEHSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>gi|156401428|ref|XP_001639293.1| predicted protein [Nematostella vectensis]
gi|156226420|gb|EDO47230.1| predicted protein [Nematostella vectensis]
Length = 265
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G++ K +D N PK P + + F+ E RE+ + +HP+ V K G +W MS+ D
Sbjct: 8 GKRRRKTLRDTNAPKAPLTGYVQFLNEQREKVRSEHPE-LPFPEVTKILGAEWSKMSQDD 66
Query: 85 KAPYVAKAEKRKVEYEKDMKNYN---------RRQPEEEEESEKSMSEVN-----DEDDD 130
K Y+ AE+ K Y +++NY ++Q E + +SE + V+ EDD+
Sbjct: 67 KQRYLDDAERDKERYIIELENYQKTDAYKSFVKKQIERKRKSECHLQTVSGKLQVPEDDE 126
Query: 131 EEGSG 135
E+ G
Sbjct: 127 EDLPG 131
>gi|97976795|tpe|CAJ29302.1| TPA: putative high mobility group B3 protein [Schistosoma mansoni]
Length = 246
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP+ PKR SAFF F + FR + + +HP K V+ + K G +W+ S DK Y +
Sbjct: 93 IKDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECS--DKEKYERR 149
Query: 92 AEKRKVEYEKDMKNY 106
A+ K+ YE+DM+ Y
Sbjct: 150 AQNDKLRYEQDMEKY 164
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KD N+PK P + + F++ RE+++K HP +N + K EKWK M+ + +
Sbjct: 3 VKDKNRPKPPMTPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMNMEQRKCFEE 62
Query: 91 KAEKRKVEYEKDMKNY 106
A+ + ++M +Y
Sbjct: 63 MAKLDTERFNREMAHY 78
>gi|145356938|ref|XP_001422680.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582923|gb|ABP00997.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 622
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F R + +P + V V KA GEKWK++++ +K+ Y
Sbjct: 515 RAKKDPNAPKRGLSAYMFFSAAKRAEITAANP-SFGVTDVAKALGEKWKTITDEEKSVYQ 573
Query: 90 AKAEKRKVEYEKDMKNY 106
+A++ K+ YE++M+ Y
Sbjct: 574 QQADEDKIRYEREMEAY 590
>gi|449549519|gb|EMD40484.1| hypothetical protein CERSUDRAFT_111079 [Ceriporiopsis subvermispora
B]
Length = 596
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR---EQYKKDHPKNKSVAAVGKAGGEK 76
A R++GK+ KDPN PK+P SA+F+F++ R E ++ K
Sbjct: 447 AQRRAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRSDPELVREVFGDETETTKQSVLAAYK 506
Query: 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
W+SM++ ++ P++A+AE+ K+EYE K Y
Sbjct: 507 WRSMTDDERKPFLAQAEQEKLEYEAARKMY 536
>gi|47228066|emb|CAF97695.1| unnamed protein product [Tetraodon nigroviridis]
Length = 662
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
+ A LSV P AG K + KDPN+P++P SA+ +F + + K +P + S V
Sbjct: 255 QTAPLSV---PGMAGNKKARKKKDPNEPQKPVSAYALFFRDTQAAIKGQNP-SASFGEVS 310
Query: 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110
K W S++E K Y K E K EY K + Y Q
Sbjct: 311 KIVASMWDSLAEEQKQVYKRKTEAAKKEYLKALAAYKANQ 350
>gi|407850184|gb|EKG04681.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 26 RKSGKA-AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
R GK AKD N PKR SA+F F+ +FR K HP + SV KA G WK +S+
Sbjct: 192 RGGGKVKAKDENAPKRSMSAYFFFVGDFR----KKHP-DLSVTETSKAAGAAWKELSDEM 246
Query: 85 KAPYVAKAEKRKVEYEKDM 103
K PY A A+K K Y+++M
Sbjct: 247 KKPYEAMAQKDKERYQREM 265
>gi|115445389|ref|NP_001046474.1| Os02g0258200 [Oryza sativa Japonica Group]
gi|113536005|dbj|BAF08388.1| Os02g0258200, partial [Oryza sativa Japonica Group]
Length = 269
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
+P SA+FV+ ++ R + K+V +G+ GE+WK+MSEA+KAP+ A A K++ EY
Sbjct: 52 QPMSAYFVYTQQRRAALVAE---KKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEY 108
Query: 100 EKDMKNYNRR 109
+ +M Y +R
Sbjct: 109 QVEMAAYRQR 118
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN+PK+PAS+F +F +E R Q ++ P S + + KWK + EA+K + KA
Sbjct: 175 DPNRPKKPASSFLLFSKEARRQLAEERPGVAS-STLTALVSVKWKELGEAEKQAWNGKAA 233
Query: 94 KRKVEYEKDMKNYNR 108
+ Y++DM+ Y +
Sbjct: 234 EAMAAYKRDMEEYTK 248
>gi|421991544|gb|AFX73410.1| transcription factor Sox9, partial [Salvelinus alpinus]
Length = 256
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 12/109 (11%)
Query: 36 NKP--KRPASAFFVFMEEFR----EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
NKP KRP +AF V+ + R +QY HP N A + K G+ W+ ++E +K P+V
Sbjct: 88 NKPHVKRPMNAFMVWAQAARRKLADQYP--HPHN---AELSKTLGKLWRLLNEGEKRPFV 142
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSGEVF 138
+AE+ +V+++KD +Y + QP + + SE D + SG++F
Sbjct: 143 EEAERLRVQHKKDHPDY-KYQPRRRKSVKNGQSEPEDGEQTHISSGDIF 190
>gi|151942838|gb|EDN61184.1| nonhistone chromosomal protein [Saccharomyces cerevisiae YJM789]
gi|190407991|gb|EDV11256.1| 11 kDa nonhistone chromosomal protein [Saccharomyces cerevisiae
RM11-1a]
gi|256268928|gb|EEU04275.1| Nhp6ap [Saccharomyces cerevisiae JAY291]
gi|259150205|emb|CAY87008.1| Nhp6ap [Saccharomyces cerevisiae EC1118]
gi|349581863|dbj|GAA27020.1| K7_Nhp6ap [Saccharomyces cerevisiae Kyokai no. 7]
Length = 93
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VGK GEKWK+++ +K PY AKA+
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENP-DITFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 94 KRKVEYEKDMKNYN 107
K YE + + YN
Sbjct: 76 ADKKRYESEKELYN 89
>gi|6435676|pdb|1CG7|A Chain A, Hmg Protein Nhp6a From Saccharomyces Cerevisiae
Length = 93
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VGK GEKWK+++ +K PY AKA+
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENP-DITFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 94 KRKVEYEKDMKNYN 107
K YE + + YN
Sbjct: 76 ADKKRYESEKELYN 89
>gi|451996730|gb|EMD89196.1| hypothetical protein COCHEDRAFT_1107529 [Cochliobolus
heterostrophus C5]
Length = 105
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E RE+ ++D+P K VGK GEKWK++++ + PY AKA
Sbjct: 23 DPNAPKRGLSAYMFFANEQREKVREDNPGIK-FGEVGKLLGEKWKALNDKQRQPYEAKAA 81
Query: 94 KRKVEYEKDMKNYN 107
K YE++ Y
Sbjct: 82 LDKKRYEQEKAAYT 95
>gi|356496334|ref|XP_003517023.1| PREDICTED: FACT complex subunit SSRP1-like [Glycine max]
Length = 640
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR S F F + RE KK +P S V + GEKWK +S +K PY AKA
Sbjct: 552 DPNAPKRAMSGFMFFSKLERENLKKTNP-GISFTDVSRVLGEKWKKLSVEEKEPYEAKAR 610
Query: 94 KRKVEYEKDMKNYNRRQP 111
+ K Y+ ++ Y QP
Sbjct: 611 EDKKRYKDEISGYKNPQP 628
>gi|449681405|ref|XP_002159252.2| PREDICTED: FACT complex subunit SSRP1-like [Hydra magnipapillata]
Length = 774
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P K S K KD N PKRP SAF ++M E RE+ K D+P + + K GGE+WK
Sbjct: 528 KRPKKEEGSSKKKKKDENAPKRPMSAFMLYMNEVREKIKADNP-GIAFTDIAKKGGEQWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
++++ K +AK K K Y D Y++
Sbjct: 587 TLTDKTKWENMAKEAKNK--YTIDFAAYSK 614
>gi|6325309|ref|NP_015377.1| Nhp6ap [Saccharomyces cerevisiae S288c]
gi|128182|sp|P11632.1|NHP6A_YEAST RecName: Full=Non-histone chromosomal protein 6A
gi|24987379|pdb|1J5N|A Chain A, Solution Structure Of The Non-Sequence-Specific Hmgb
Protein Nhp6a In Complex With Sry Dna
gi|24987655|pdb|1LWM|A Chain A, Solution Structure Of The Sequence-Non-Specific Hmgb
Protein Nhp6a
gi|4034|emb|CAA33377.1| unnamed protein product [Saccharomyces cerevisiae]
gi|171883|gb|AAA34754.1| high mobility group non-histone protein [Saccharomyces cerevisiae]
gi|805034|emb|CAA89171.1| Nhp6ap [Saccharomyces cerevisiae]
gi|1314122|emb|CAA94998.1| Nhp6ap [Saccharomyces cerevisiae]
gi|51013911|gb|AAT93249.1| YPR052C [Saccharomyces cerevisiae]
gi|285815583|tpg|DAA11475.1| TPA: Nhp6ap [Saccharomyces cerevisiae S288c]
gi|392296063|gb|EIW07166.1| Nhp6ap [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 93
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VGK GEKWK+++ +K PY AKA+
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENP-DITFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 94 KRKVEYEKDMKNYN 107
K YE + + YN
Sbjct: 76 ADKKRYESEKELYN 89
>gi|146412508|ref|XP_001482225.1| hypothetical protein PGUG_05245 [Meyerozyma guilliermondii ATCC
6260]
gi|146392989|gb|EDK41147.1| hypothetical protein PGUG_05245 [Meyerozyma guilliermondii ATCC
6260]
Length = 90
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR SA+ F E R+ + ++P + VGK GEKWK+M+ +K PY KAE
Sbjct: 13 DPDAPKRSLSAYMFFANENRDIIRAENP-GIAFGQVGKLLGEKWKAMNADEKVPYETKAE 71
Query: 94 KRKVEYEKDMKNYNRR 109
K YEK+ Y +R
Sbjct: 72 ADKKRYEKEKAEYAKR 87
>gi|67983563|ref|XP_669154.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56482946|emb|CAH96342.1| hypothetical protein PB000724.01.0 [Plasmodium berghei]
Length = 108
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP PKR SA+ ++++ R + ++ P+ K VA VGK GE W ++ A KAPY KA
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIQERPELAKEVAQVGKLIGEAWGQLTPAQKAPYEKKA 79
Query: 93 EKRKVEYEKDMKNYN 107
E KV Y K++K +
Sbjct: 80 ELDKVRYSKEIKLID 94
>gi|221053558|ref|XP_002258153.1| high mobility group protein (HMG protein) [Plasmodium knowlesi
strain H]
gi|193807986|emb|CAQ38690.1| high mobility group protein (HMG protein),putative [Plasmodium
knowlesi strain H]
Length = 99
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
KDP PKR SA+ ++++ R + K+ P+ ++VA VGK GE W +S A K PY K
Sbjct: 19 KDPLAPKRALSAYMFYVKDKRLELIKEKPELARNVAQVGKLVGEAWGKLSAAQKTPYEKK 78
Query: 92 AEKRKVEYEKDMKNYNRRQPE 112
A+ KV Y K+++ Y + + E
Sbjct: 79 AQLDKVRYSKEIEEYRKTKNE 99
>gi|425767422|gb|EKV05996.1| Non-histone chromosomal protein 6 [Penicillium digitatum PHI26]
gi|425779648|gb|EKV17689.1| Non-histone chromosomal protein 6 [Penicillium digitatum Pd1]
Length = 189
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F + R++ ++++P S VGK G+KWK++SE D+ PY AKA
Sbjct: 104 KDPNAPKRGLSAYMFFANDNRDKVREENP-GISFGQVGKQLGDKWKALSETDRKPYDAKA 162
Query: 93 EKRKVEYEKDMKNY 106
K YE++ Y
Sbjct: 163 AADKKRYEEEKAAY 176
>gi|401839076|gb|EJT42436.1| NHP6A-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 93
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VGK GEKWK+++ +K PY AKA+
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENP-DITFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 94 KRKVEYEKDMKNYN 107
K YE + + YN
Sbjct: 76 ADKKRYESEKELYN 89
>gi|336373684|gb|EGO02022.1| hypothetical protein SERLA73DRAFT_177720 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386499|gb|EGO27645.1| hypothetical protein SERLADRAFT_461466 [Serpula lacrymans var.
lacrymans S7.9]
Length = 365
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 17/95 (17%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEF-------REQYKKDHPKNK-SVAAVGK 71
A RK+GK+ KDPN PK+P SA+F+F++ RE + ++ K SV A
Sbjct: 219 AQRKAGKSRKSNIKDPNAPKKPLSAYFMFLQRIRSEPALVREVFGEEQETTKQSVLAAA- 277
Query: 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
KW+SM++ ++ P++A+AE+ K++YE + Y
Sbjct: 278 ----KWRSMTDDERKPFLAQAEQEKLDYEAARRMY 308
>gi|341879743|gb|EGT35678.1| CBN-HMG-1.2 protein [Caenorhabditis brenneri]
Length = 235
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
A RK +A KDP+ PKR SAFF + ++ R + + HP K V V + G+ WK +S+
Sbjct: 121 AMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQSAHPDWK-VGQVAQELGKMWKQVSQE 179
Query: 84 DKAPYVAKAEKRKVEYEKDMKNY 106
K Y AKA+ K Y +M+NY
Sbjct: 180 LKDSYEAKAQADKDRYADEMRNY 202
>gi|395732940|ref|XP_002813012.2| PREDICTED: nuclear autoantigen Sp-100-like [Pongo abelii]
Length = 263
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP AFF+F E+R + K +HP S+ V K W + + ADK Y KA
Sbjct: 150 DPNAPKRPPLAFFLFCSEYRPKIKGEHP-GLSIDDVVKKLAGMWNNTAAADKQFYENKAA 208
Query: 94 KRKVEYEKDMKNY 106
+ K +Y+KD+ Y
Sbjct: 209 RLKEKYKKDIAAY 221
>gi|325181279|emb|CCA15692.1| high mobility group protein putative [Albugo laibachii Nc14]
Length = 231
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDP+ PKR +SAF + + R Q KK++P K+ + K GE W ++ KAPYV
Sbjct: 115 RAKKDPSAPKRASSAFLFYSQVMRPQLKKENPDLKNTD-ISKRLGEAWSKATDVQKAPYV 173
Query: 90 AKAEKRKVEYEKDMKNYN 107
K + + Y+++M+ +N
Sbjct: 174 EKEREDRSRYKREMEEWN 191
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
K P PKR S + +F + RE+ K P + V V +A + W MSE +K P+ + A
Sbjct: 32 KAPGAPKRGKSPYILFSMDKREEIKSHMPADAKVTDVMRAIADAWSKMSEDEKQPWKSAA 91
Query: 93 EKRKVEYEKDMKNYN 107
E K YE++M +Y+
Sbjct: 92 EVDKQRYEEEMASYD 106
>gi|444725503|gb|ELW66067.1| Trem-like transcript 1 protein [Tupaia chinensis]
Length = 668
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR S FF+F EFR + K +P S+ V K GE W ++S+++K PY+
Sbjct: 586 DPNAPKRRPSVFFLFCSEFRLKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITNGA 644
Query: 94 K 94
K
Sbjct: 645 K 645
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 511 SAYTFFVQTCREKHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 570
Query: 102 DMKNY 106
+MK+Y
Sbjct: 571 EMKDY 575
>gi|332267288|ref|XP_003282615.1| PREDICTED: high mobility group protein B3-like, partial [Nomascus
leucogenys]
Length = 103
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102
S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD
Sbjct: 1 SGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKD 59
Query: 103 MKNY 106
+ +Y
Sbjct: 60 VADY 63
>gi|82753906|ref|XP_727864.1| high mobility group protein [Plasmodium yoelii yoelii 17XNL]
gi|23483924|gb|EAA19429.1| high mobility group protein [Plasmodium yoelii yoelii]
Length = 126
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP PKR SA+ ++++ R + ++ P+ K VA VGK GE W ++ A KAPY KA
Sbjct: 48 DPLAPKRALSAYMFYVKDKRLEIIQERPELAKEVAQVGKLIGEAWGQLTPAQKAPYEKKA 107
Query: 93 EKRKVEYEKDMKNYNR 108
E KV Y K+++ Y +
Sbjct: 108 ELDKVRYSKEIEEYRK 123
>gi|213407940|ref|XP_002174741.1| predicted protein [Schizosaccharomyces japonicus yFS275]
gi|212002788|gb|EEB08448.1| predicted protein [Schizosaccharomyces japonicus yFS275]
Length = 134
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KA RK+ + KDPN PKR SAF F RE+ K+++P+ + +G G+KWK+++
Sbjct: 3 KAARKTRR--KDPNAPKRNMSAFMFFSMSNREKIKEENPE-ATFGQIGSLLGKKWKTLTA 59
Query: 83 ADKAPYVAKAEKRKVEYEKD 102
+K PY KA K K YE++
Sbjct: 60 VEKEPYEEKARKDKERYERE 79
>gi|367012149|ref|XP_003680575.1| hypothetical protein TDEL_0C04750 [Torulaspora delbrueckii]
gi|359748234|emb|CCE91364.1| hypothetical protein TDEL_0C04750 [Torulaspora delbrueckii]
Length = 93
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P + + VG+ GE+WK+++ +K PY +KAE
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENP-DVTFGQVGRLLGERWKALTPDEKTPYESKAE 75
Query: 94 KRKVEYEKDMKNYN 107
K YE + + YN
Sbjct: 76 ADKKRYESEKELYN 89
>gi|195382097|ref|XP_002049768.1| GJ21774 [Drosophila virilis]
gi|194144565|gb|EDW60961.1| GJ21774 [Drosophila virilis]
Length = 729
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
D NKPKR +AF +++ + REQ K+D+P K V + K GGE WK + DK+ + A
Sbjct: 555 DSNKPKRATTAFMLWLNDTREQIKRDNPGIK-VTEIAKKGGEMWKELK--DKSKWEEIAA 611
Query: 94 KRKVEYEKDMKNY 106
K + Y+ +M+NY
Sbjct: 612 KDRQRYQDEMRNY 624
>gi|442755991|gb|JAA70155.1| Putative dorsal switch protein 1 [Ixodes ricinus]
Length = 207
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF F + R +++ P + SV V K G +W + + K+ Y
Sbjct: 88 KRTKDPNAPKRPLSAFFWFCNDERPNVRQESP-DASVGEVAKELGRRWNDVGDDTKSKYE 146
Query: 90 AKAEKRKVEYEKDMKNY 106
A K K YEK++K Y
Sbjct: 147 GLAAKDKARYEKELKAY 163
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
+KP+ SA+ F++ RE++KK HP +N A K E+WK+MS+ +K + A+K
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPTENVVFAEFSKKCAERWKTMSDGEKKRFHQMADK 64
Query: 95 RKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSGEVFFWGCFD 144
K ++ +M +Y +P + E+S+K + S FFW C D
Sbjct: 65 DKKRFDSEMADY---KPPKGEKSKKRKRTKDPNAPKRPLS--AFFWFCND 109
>gi|255073265|ref|XP_002500307.1| set domain protein [Micromonas sp. RCC299]
gi|226515569|gb|ACO61565.1| set domain protein [Micromonas sp. RCC299]
Length = 1496
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMS 81
K ++S AA + KRP +AFF+F +E R + P+ ++ ++AVGK GE+W+ +S
Sbjct: 658 KGSKESRDAAANAAGIKRPMTAFFIFSQEQRALLIEQRPELRTNISAVGKLMGERWRKLS 717
Query: 82 EADKAPYVAKAEKRKVEY 99
+ +K PY KAE+ + EY
Sbjct: 718 DEEKFPYAIKAEEARHEY 735
>gi|226530710|ref|NP_001144208.1| hypothetical protein [Zea mays]
gi|195638446|gb|ACG38691.1| hypothetical protein [Zea mays]
gi|413936487|gb|AFW71038.1| hypothetical protein ZEAMMB73_874920 [Zea mays]
Length = 487
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99
+P SA+FV+ +E R + K+V +GK GE+WK+M+E +APY A K+K EY
Sbjct: 289 QPMSAYFVYSQERRATLVAE---KKNVPEIGKITGEEWKNMTEGQRAPYEEVARKQKEEY 345
Query: 100 EKDMKNYNRRQPEE 113
K M+ Y +++ EE
Sbjct: 346 HKQMEVYKQKKAEE 359
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPN+PKRPAS+F +F +E R+Q ++ P N ++ A+ KWK +S ++ + AK
Sbjct: 408 DPNRPKRPASSFLLFSKEERKQLIEERPGINNSTLNALITV---KWKELSGEERQAWNAK 464
Query: 92 AEKRKVEYEKDMKNYNRRQ 110
A Y+K+M+ Y + Q
Sbjct: 465 AAPAMAAYKKEMEEYTKAQ 483
>gi|241122588|ref|XP_002403591.1| DNA-binding protein, putative [Ixodes scapularis]
gi|215493481|gb|EEC03122.1| DNA-binding protein, putative [Ixodes scapularis]
Length = 207
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP SAFF F + R +++ P + SV V K G +W + + K+ Y
Sbjct: 88 KRTKDPNAPKRPLSAFFWFCNDERPNVRQESP-DASVGEVAKELGRRWNDVGDDTKSKYE 146
Query: 90 AKAEKRKVEYEKDMKNY 106
A K K YEK++K Y
Sbjct: 147 GLAAKDKARYEKELKAY 163
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
+KP+ SA+ F++ RE++KK HP +N A K E+WK+MSE +K + A+K
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPSENVVFAEFSKKCAERWKTMSEGEKKRFHQMADK 64
Query: 95 RKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDDDEEGSGEVFFWGCFD 144
K ++ +M +Y +P + E+S+K + S FFW C D
Sbjct: 65 DKKRFDSEMADY---KPPKGEKSKKRKRTKDPNAPKRPLS--AFFWFCND 109
>gi|156382433|ref|XP_001632558.1| predicted protein [Nematostella vectensis]
gi|156219615|gb|EDO40495.1| predicted protein [Nematostella vectensis]
Length = 287
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
M+G S NA S +KK KDPN PK+PA+AFF+F ++ R ++DH
Sbjct: 77 MQGQTSPGQVSNATTSSHKKGKSRSSAKQDKEKDPNAPKKPANAFFMFCQQQRTVMQEDH 136
Query: 61 PKNKSVAA---VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP 111
+V + K+ ++W ++ +K Y E+ K YE +MK Y+ +P
Sbjct: 137 KDATAVMGHHELTKSLAKEWNNLLPDEKKVYYEMYERDKERYELEMKQYSSDKP 190
>gi|126226|sp|P11873.1|HMGC_TETTH RecName: Full=High mobility group protein C; AltName:
Full=Non-histone chromosomal protein LG-1
Length = 100
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94
P PKRP SAFF+F + EQ KK++P N + + EKWK++ E +K Y +
Sbjct: 9 PAPPKRPLSAFFLFKQHNYEQVKKENP-NAKITELTSMIAEKWKAVGEKEKKKYETLQSE 67
Query: 95 RKVEYEKDMKNYNRR 109
K +YEKDM+ Y ++
Sbjct: 68 AKAKYEKDMQAYEKK 82
>gi|74638955|sp|Q9UVL1.1|NHP6_CANAL RecName: Full=Non-histone chromosomal protein 6
gi|6273391|gb|AAF06350.1|AF196333_1 nonhistone protein 6 [Candida albicans]
gi|238881668|gb|EEQ45306.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 92
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR SA+ F E R+ + ++P S VGK GEKWK+++ DK PY KAE
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALNSEDKLPYENKAE 73
Query: 94 KRKVEYEKDMKNYNRR 109
K YEK+ Y ++
Sbjct: 74 ADKKRYEKEKAEYAKK 89
>gi|241954210|ref|XP_002419826.1| high-mobility group non-histone chromosomal protein, putative
[Candida dubliniensis CD36]
gi|223643167|emb|CAX42041.1| high-mobility group non-histone chromosomal protein, putative
[Candida dubliniensis CD36]
Length = 92
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP+ PKR SA+ F E R+ + ++P S VGK GEKWK+++ DK PY KAE
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALNSEDKLPYENKAE 73
Query: 94 KRKVEYEKDMKNYNRR 109
K YEK+ Y ++
Sbjct: 74 ADKKRYEKEKAEYAKK 89
>gi|444520312|gb|ELV12956.1| High mobility group protein B1 [Tupaia chinensis]
Length = 150
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87
+ K KDPN PKRP AFF+F E+ + K HP S K GE W + + DK P
Sbjct: 73 TKKKFKDPNVPKRPPLAFFLFCFEYCPKIKGKHP-GLSTGVAAKKLGELWNNTAADDKQP 131
Query: 88 YVAKAEKRKVEYEKDMKNY 106
Y KA K K +YEKD+ Y
Sbjct: 132 YEKKAAKLKEKYEKDIAAY 150
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
S + F++ FRE++KK+H + + + K E+WK+MS +K + A+ YE+
Sbjct: 2 SPYTFFVQTFREEHKKEHSDVSVNFSEFSKKCSERWKTMSAKEKGKFEDMAKTDMALYER 61
Query: 102 DMKNY 106
+MK Y
Sbjct: 62 EMKTY 66
>gi|390348780|ref|XP_003727081.1| PREDICTED: high mobility group B protein 13-like
[Strongylocentrotus purpuratus]
Length = 238
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 6 SKSDTRNAKLSVNKKPAKAGRKSGKAAKD--PNKPKRPASAFFVFMEEFREQYKKDHPKN 63
S S TR L + +P + K + P KPKRP ++FF F E R + P N
Sbjct: 20 SVSTTRPGLLGSSSQPKLPWMQDRKEFSEDIPAKPKRPLTSFFQFTSEQRPKLTAMEP-N 78
Query: 64 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSE 123
SV V K G W+ +SE +K Y E R+ +Y ++M++Y R +E+ + SMSE
Sbjct: 79 LSVTDVTKRIGAMWRDLSEDEKEVYRLDFESRREKYTEEMEDYRSRLTDEQLD---SMSE 135
Query: 124 VN 125
++
Sbjct: 136 ID 137
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
NK+ KA R+ K NKPKRP + + +F++ Q + + A K W
Sbjct: 139 NKREMKAKRRHKSEMKKLNKPKRPPTGYSLFIKAQFNQQPAGGRTREEIQAQFKEAASIW 198
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
S+ + +K Y +A Y ++M+ + R+
Sbjct: 199 HSLPDHEKQQYHEEASLLTETYREEMEEWKRK 230
>gi|432915279|ref|XP_004079157.1| PREDICTED: TOX high mobility group box family member 4-A-like
[Oryzias latipes]
Length = 611
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
+V P K G+ KDPN+P++P SA+ +F + + K +P N S V K
Sbjct: 229 AVAPAPETTTAKKGRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNP-NASFGEVSKIVAS 287
Query: 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR---QPEEEE 115
W S++E K Y K E K EY K + Y QP EE
Sbjct: 288 MWDSLAEDQKQVYKRKTEAAKKEYLKALAAYKANQLSQPSAEE 330
>gi|384499401|gb|EIE89892.1| hypothetical protein RO3G_14603 [Rhizopus delemar RA 99-880]
Length = 352
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPA--KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKK 58
M +S+++ + A + ++P+ K R+ K K P PK P SA+ ++ E R + K
Sbjct: 162 MYIRRSRAELKEAGKMIKEEPSDKKTARRVKKKIKSPGIPKHPLSAYMWYLTEVRPKTMK 221
Query: 59 DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
P + +V + K EKW +M++ ++AP+ KA+ K Y ++M+ Y
Sbjct: 222 SFPSS-NVGQISKYCAEKWHTMTDEERAPWKTKAQVDKERYAREMQLY 268
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
A P + RP +A+ +F ++ R K P +V + K E+W+ MS+ +K YV +
Sbjct: 88 ANAPIRVTRPPNAYLLFNKKMRRVLKDQDP-TMNVGEISKQIAERWRKMSKEEKEMYVNE 146
Query: 92 AEKRKVEYEKDMKN--YNRRQPEEEEESEKSMSE 123
A + K E N Y RR E +E+ K + E
Sbjct: 147 ANRLKQEQRALHPNSMYIRRSRAELKEAGKMIKE 180
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.305 0.124 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,387,226,768
Number of Sequences: 23463169
Number of extensions: 93803316
Number of successful extensions: 942015
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4461
Number of HSP's successfully gapped in prelim test: 7966
Number of HSP's that attempted gapping in prelim test: 860809
Number of HSP's gapped (non-prelim): 56224
length of query: 145
length of database: 8,064,228,071
effective HSP length: 109
effective length of query: 36
effective length of database: 9,801,709,946
effective search space: 352861558056
effective search space used: 352861558056
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 71 (32.0 bits)