BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032199
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 112/128 (87%), Gaps = 6/128 (4%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEES 117
PKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN++ P+E+EES
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEES 117
Query: 118 EKSMSEVN 125
+KS+SEVN
Sbjct: 118 DKSVSEVN 125
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 175 bits (443), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 112/128 (87%), Gaps = 3/128 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEES 117
PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN++ P+E+EES
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEES 120
Query: 118 EKSMSEVN 125
+KS+SEVN
Sbjct: 121 DKSVSEVN 128
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/134 (63%), Positives = 109/134 (81%), Gaps = 5/134 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+ + N KL+V KK A +K+ KA KDPNKPKRP SAFFVFME+FR+ YK+ H
Sbjct: 1 MKGGKSKAKSDN-KLAV-KKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---PEEEEES 117
P NKSVA VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN++Q EEEES
Sbjct: 59 PNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEES 118
Query: 118 EKSMSEVNDEDDDE 131
+KS SEVND+D+D+
Sbjct: 119 DKSRSEVNDDDEDQ 132
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 99/118 (83%), Gaps = 6/118 (5%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKA-GRKS---GKAAKDPNKPKRPASAFFVFMEEFRE 54
MKGGKSK++++ A KL+VNKK A RK GKAAKDPNKPKRP SAFFVFMEEFR+
Sbjct: 1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60
Query: 55 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112
+ K+HP+NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++Q E
Sbjct: 61 VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAE 118
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/134 (61%), Positives = 101/134 (75%), Gaps = 9/134 (6%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFR 53
MKGGKSK +++ A KL+VNKK A A + K A KDPNKPKRP SAFFVFM +FR
Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ--P 111
EQYKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE ++ YN++
Sbjct: 61 EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLEGK 120
Query: 112 EEEEESEKSMSEVN 125
++EE S+KS SEVN
Sbjct: 121 DDEEGSDKSKSEVN 134
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 82/104 (78%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+K
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQPEEEEESEKSMSEVNDEDD 129
APY KA KRK EYEK M YN+ E +ESEKS SE+NDED+
Sbjct: 101 APYEEKAAKRKAEYEKQMDAYNKNLEEGSDESEKSRSEINDEDE 144
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/113 (65%), Positives = 90/113 (79%), Gaps = 7/113 (6%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V +KPAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 58
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
+K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K + YN+
Sbjct: 59 FKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 99/142 (69%), Gaps = 16/142 (11%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE----EEE 115
+P NKSVA VGKA G +WK+M++ DKAPYVAKAE RK EY K+++ YN + EE+
Sbjct: 57 NPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREED 116
Query: 116 ESEKSMSEVND-------EDDD 130
+S+KS SEV++ EDDD
Sbjct: 117 DSDKSKSEVDEAVSEEEAEDDD 138
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 84/112 (75%), Gaps = 4/112 (3%)
Query: 1 MKGGKSKSDTR-NAKLSVNKKPA---KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQY 56
MKG KSK + +AKL+V K A A K GKA KDPNKPKR SAFFVFM EFRE++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEF 60
Query: 57 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
K+ +PKNKSVAAVGKA GE+WKS+SE++KAPYVAKA K K EY K + YN+
Sbjct: 61 KQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 63/83 (75%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G K GK KDPN+PK+P S FFVF+++FR+++ +P NKSV VG+A G+KWK+M+E +
Sbjct: 21 GNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEE 80
Query: 85 KAPYVAKAEKRKVEYEKDMKNYN 107
+AP+VAK++ +K EY M+ YN
Sbjct: 81 RAPFVAKSQSKKTEYAVTMQQYN 103
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPY 88
K++ NKPKRP +AFF+FM +FR+ +K +H N S+A K GGEKWKS++E +K Y
Sbjct: 107 KSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVY 164
Query: 89 VAKAEKRKVEYEKDM 103
+ KA + K EY K +
Sbjct: 165 LDKAAELKAEYNKSL 179
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY KA
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKA 147
Query: 93 EKRKVEYEKDMKNY 106
+ K +YEKD+ Y
Sbjct: 148 SRLKEKYEKDITAY 161
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 2 GKDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 62 LAKLDKVRYEREMRSY 77
>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14
PE=2 SV=2
Length = 151
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 19/117 (16%)
Query: 10 TRNAKLSVNKKPAKAGRKSGKAAKDPNK-----------------PKRPASAFFVFMEEF 52
+RN +L+V K ++ R+S + P + PK+PA+AFF F+++F
Sbjct: 20 SRNLELAV--KSSEGARRSTRLRLQPLRKPKTSPKKKPVKLQTKMPKKPATAFFFFLDDF 77
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109
R+QY++++P KS+ +GK GEKWK+M+ +K Y A +++ E+ + M Y +R
Sbjct: 78 RKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYTKR 134
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PYV KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K KDPN PKRP S FF+F EF + K +P + V K GE WK++
Sbjct: 80 PAKGGKK-----KDPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNL 133
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PY+ +A K K +YEKD+ Y
Sbjct: 134 NDSEKQPYITQAAKLKEKYEKDVAVY 159
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +PK + A K E+WK+MS+ +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73
Query: 102 DMKNY 106
++K+Y
Sbjct: 74 EIKDY 78
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +KA + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 579 AGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 146
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 147 KLKEKYEKDVADY 159
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102
SA+ F++ RE++KK+ + A K E+WK+MS +KA + A+ KV Y+++
Sbjct: 14 SAYAFFVQTCREEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDRE 73
Query: 103 MKNY 106
MK+Y
Sbjct: 74 MKDY 77
>sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2
Length = 708
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 20 KPAKAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE W
Sbjct: 527 KDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIW 585
Query: 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNY 106
K MS+ K + KAE + EYEK MK Y
Sbjct: 586 KGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +APY
Sbjct: 16 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNEKQRAPYE 74
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEE 114
AKA K YE + + YN Q EEE
Sbjct: 75 AKAAADKKRYEDEKQAYNADQEEEE 99
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
Length = 207
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K DHP S+ K GE W DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQLAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A + E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKR SA+ F E R++ ++++P S VGK GE+WK++S++++ PY KA
Sbjct: 20 KDPNAPKRGLSAYMFFANENRDKVREENP-GISFGQVGKMLGERWKALSDSERRPYEEKA 78
Query: 93 EKRKVEYEKDMKNYNRRQPEEEEES 117
K YE + +YN Q E+EEES
Sbjct: 79 AADKKRYEDEKASYNAAQDEDEEES 103
>sp|P07156|HMGB1_CRIGR High mobility group protein B1 (Fragment) OS=Cricetulus griseus
GN=HMGB1 PE=1 SV=1
Length = 180
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 55 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 113
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 114 AKLKEKYEKDIAAY 127
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
SV=3
Length = 215
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
Length = 215
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
SV=3
Length = 215
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
SV=1
Length = 215
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3
SV=1
Length = 215
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
Length = 215
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKHPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+ +APY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSDKQRAPYE 76
Query: 90 AKAEKRKVEYEKDMKNYNRRQPEEE 114
AKA K YE + + YN EEE
Sbjct: 77 AKAAADKKRYEDEKQAYNAEADEEE 101
>sp|Q9T012|HMG13_ARATH High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13
PE=2 SV=1
Length = 446
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK+P SA+ ++ E R K + NKSV V K GE+WK++SE KAPY A+
Sbjct: 242 DPLKPKQPISAYLIYANERRAALKGE---NKSVIEVAKMAGEEWKNLSEEKKAPYDQMAK 298
Query: 94 KRKVEYEKDMKNYNRRQPEE 113
K K Y ++M+ Y R + EE
Sbjct: 299 KNKEIYLQEMEGYKRTKEEE 318
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+P S++F+F ++ R+ ++HP N +V A KW + E +K Y +K
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTA---HISLKWMELGEEEKQVYNSK 424
Query: 92 AEKRKVEYEKDMKNYNR 108
A + Y+K+++ YN+
Sbjct: 425 AAELMEAYKKEVEEYNK 441
>sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1
Length = 709
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + +YEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>sp|Q9SUP7|HMGB6_ARATH High mobility group B protein 6 OS=Arabidopsis thaliana GN=HMGB6
PE=2 SV=1
Length = 456
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SAF V+ E R +++ NKSV V K GE+WK++S+ KAPY A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREE---NKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 94 KRKVEYEKDMKNYNRRQPEE 113
K K Y + M+ Y R + EE
Sbjct: 308 KNKETYLQAMEEYKRTKEEE 327
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPK+PAS++F+F ++ R++ ++ P + A V KWK +SE +K Y KA
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNN-ATVTALISLKWKELSEEEKQVYNGKAA 433
Query: 94 KRKVEYEKDMKNYNRR 109
K Y+K+++ YN++
Sbjct: 434 KLMEAYKKEVEAYNKK 449
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
KRP+S++ ++ ++ + KK++P+ G KWKS+S DK PY
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEA-DFKETSNILGAKWKSLSAEDKKPY 187
>sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2
Length = 709
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601
Query: 94 KRKVEYEKDMKNY 106
+ EYEK MK Y
Sbjct: 602 DARREYEKAMKEY 614
>sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1
Length = 693
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP K + K KDP PKRP SA+ +++ RE+ K ++P S+ + K GE WK
Sbjct: 524 KKPRK--KPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWK 580
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEE 113
+MS K + +AE+ K +YEK MK YN P E
Sbjct: 581 NMSRDKKEEWDRRAEEAKRDYEKAMKEYNTSAPTE 615
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>sp|P17741|HMGB2_PIG High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2
Length = 210
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1
Length = 642
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR S F F + RE KK +P S VG+ GEKWK++S +K PY AKA+
Sbjct: 554 DPNAPKRALSGFMFFSQMERENLKKTNP-GISFTDVGRVLGEKWKNLSAEEKEPYEAKAQ 612
Query: 94 KRKVEYEKDMKNYNRRQP 111
K Y+ ++ Y QP
Sbjct: 613 ADKKRYKDEISGYKNPQP 630
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 22 AKAGRKSG-KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KA R++G + KDPN PKR SA+ F + R++ ++++P S VGK GEKWKS+
Sbjct: 10 TKATRETGGRKKKDPNAPKRGLSAYMFFANDNRDKVREENP-GISFGQVGKMLGEKWKSL 68
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEEEES 117
S+ ++ PY KA K YE + Y + EE+EES
Sbjct: 69 SDKERKPYEDKAAADKKRYEDEKAAYKAGEAEEDEES 105
>sp|P30681|HMGB2_MOUSE High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3
Length = 210
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+K+ + KDPN PKR SA+ F E R+ + ++P + VG+ GEKWK+++E +K
Sbjct: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENP-GITFGQVGRILGEKWKALNEDEK 64
Query: 86 APYVAKAEKRKVEYEKDMKNY 106
APY AKAE K YE + + Y
Sbjct: 65 APYEAKAEADKKRYESEKELY 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.124 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,090,011
Number of Sequences: 539616
Number of extensions: 2345565
Number of successful extensions: 26182
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 797
Number of HSP's that attempted gapping in prelim test: 18077
Number of HSP's gapped (non-prelim): 5729
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)