Query 032199
Match_columns 145
No_of_seqs 107 out of 1071
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 10:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 99.9 1.6E-24 3.5E-29 149.3 11.9 88 19-107 4-93 (94)
2 cd01389 MATA_HMG-box MATA_HMG- 99.8 7.7E-21 1.7E-25 126.0 8.2 72 37-109 1-72 (77)
3 cd01388 SOX-TCF_HMG-box SOX-TC 99.8 2.2E-20 4.7E-25 122.4 8.4 69 38-107 2-70 (72)
4 PF00505 HMG_box: HMG (high mo 99.8 5.8E-20 1.3E-24 118.4 9.4 69 38-107 1-69 (69)
5 cd01390 HMGB-UBF_HMG-box HMGB- 99.8 1.9E-19 4.2E-24 114.9 9.3 65 38-103 1-65 (66)
6 smart00398 HMG high mobility g 99.8 2.5E-19 5.5E-24 115.1 9.5 70 37-107 1-70 (70)
7 PF09011 HMG_box_2: HMG-box do 99.8 4.4E-19 9.4E-24 116.5 9.4 72 35-107 1-73 (73)
8 COG5648 NHP6B Chromatin-associ 99.8 8.8E-19 1.9E-23 134.8 7.9 95 17-112 50-144 (211)
9 cd00084 HMG-box High Mobility 99.7 1.8E-17 3.8E-22 105.3 9.3 65 38-103 1-65 (66)
10 KOG0381 HMG box-containing pro 99.7 1.4E-16 3E-21 109.1 11.2 76 34-110 17-95 (96)
11 KOG0526 Nucleosome-binding fac 99.7 1.5E-16 3.3E-21 135.9 7.4 81 25-110 523-603 (615)
12 KOG0527 HMG-box transcription 99.6 3.8E-16 8.2E-21 128.6 6.4 83 30-113 55-137 (331)
13 KOG4715 SWI/SNF-related matrix 99.3 1.4E-11 3.1E-16 100.1 7.9 82 30-112 57-138 (410)
14 KOG3248 Transcription factor T 99.3 1.1E-11 2.4E-16 101.4 7.0 76 37-113 191-266 (421)
15 KOG0528 HMG-box transcription 98.9 7E-10 1.5E-14 94.4 1.6 80 32-112 320-399 (511)
16 KOG2746 HMG-box transcription 98.6 5E-08 1.1E-12 86.0 5.0 81 21-102 165-247 (683)
17 PF14887 HMG_box_5: HMG (high 98.2 1.3E-05 2.7E-10 53.2 8.4 75 36-112 2-76 (85)
18 PF04690 YABBY: YABBY protein; 97.5 0.00032 7E-09 53.2 5.8 46 35-81 119-164 (170)
19 COG5648 NHP6B Chromatin-associ 97.0 0.00054 1.2E-08 53.3 3.2 72 32-104 138-209 (211)
20 PF06382 DUF1074: Protein of u 97.0 0.0046 9.9E-08 47.1 7.9 49 42-95 83-131 (183)
21 PF08073 CHDNT: CHDNT (NUC034) 96.2 0.0097 2.1E-07 37.0 4.0 39 42-81 13-51 (55)
22 PF04769 MAT_Alpha1: Mating-ty 93.8 0.15 3.3E-06 39.7 5.3 56 32-94 38-93 (201)
23 PF06244 DUF1014: Protein of u 93.7 0.12 2.5E-06 37.3 4.1 47 36-83 70-117 (122)
24 TIGR03481 HpnM hopanoid biosyn 89.4 1.2 2.5E-05 34.4 5.7 47 64-110 64-112 (198)
25 PRK15117 ABC transporter perip 89.1 1.2 2.7E-05 34.6 5.8 50 61-111 66-117 (211)
26 KOG3223 Uncharacterized conser 85.4 1.8 3.9E-05 33.6 4.6 54 36-93 162-216 (221)
27 PF05494 Tol_Tol_Ttg2: Toluene 82.5 2.2 4.7E-05 31.7 3.9 47 64-110 38-86 (170)
28 COG2854 Ttg2D ABC-type transpo 68.5 6.7 0.00014 30.6 3.4 41 72-112 79-120 (202)
29 PF01352 KRAB: KRAB box; Inte 65.3 5.7 0.00012 23.0 1.9 30 65-94 2-32 (41)
30 PF11304 DUF3106: Protein of u 65.0 32 0.00069 23.9 6.0 42 68-109 11-59 (107)
31 KOG0717 Molecular chaperone (D 52.2 12 0.00027 32.8 2.5 7 137-143 293-299 (508)
32 PF12881 NUT_N: NUT protein N 52.2 48 0.001 27.7 5.8 39 56-95 243-281 (328)
33 PF13875 DUF4202: Domain of un 50.8 31 0.00066 26.6 4.2 40 44-87 131-170 (185)
34 PF06945 DUF1289: Protein of u 44.2 36 0.00077 20.4 3.0 24 65-93 23-46 (51)
35 PF00887 ACBP: Acyl CoA bindin 38.4 1.1E+02 0.0024 19.9 5.3 53 45-99 30-86 (87)
36 KOG1610 Corticosteroid 11-beta 37.9 1E+02 0.0022 25.8 5.7 52 48-99 188-251 (322)
37 cd07081 ALDH_F20_ACDH_EutE-lik 33.8 1.1E+02 0.0025 26.3 5.6 43 68-110 6-48 (439)
38 PRK10236 hypothetical protein; 33.5 47 0.001 26.6 2.9 26 69-94 118-143 (237)
39 PRK09706 transcriptional repre 32.9 1.4E+02 0.003 21.0 5.2 43 68-110 87-129 (135)
40 KOG3838 Mannose lectin ERGIC-5 31.9 54 0.0012 28.5 3.2 35 79-113 268-302 (497)
41 PRK10363 cpxP periplasmic repr 29.0 1.7E+02 0.0038 22.1 5.2 40 68-108 112-151 (166)
42 PRK12751 cpxP periplasmic stre 28.9 1.4E+02 0.0031 22.3 4.8 31 70-100 120-150 (162)
43 PRK12750 cpxP periplasmic repr 26.4 2E+02 0.0042 21.6 5.2 33 71-103 128-160 (170)
44 TIGR00787 dctP tripartite ATP- 25.8 1.5E+02 0.0033 23.0 4.7 28 74-101 213-240 (257)
45 PF15368 BioT2: Spermatogenesi 25.6 13 0.00027 28.0 -1.4 16 130-145 124-139 (170)
46 cd07122 ALDH_F20_ACDH Coenzyme 25.2 2E+02 0.0043 24.8 5.6 43 68-110 6-48 (436)
47 cd07132 ALDH_F3AB Aldehyde deh 24.8 1.9E+02 0.0041 24.8 5.4 43 68-110 5-47 (443)
48 cd07133 ALDH_CALDH_CalB Conife 24.1 2.1E+02 0.0046 24.4 5.6 43 67-109 4-46 (434)
49 PHA02662 ORF131 putative membr 23.8 1.9E+02 0.0042 23.0 4.8 44 43-87 22-97 (226)
50 PF09164 VitD-bind_III: Vitami 22.7 2.2E+02 0.0048 18.3 4.9 33 43-76 9-41 (68)
51 COG1638 DctP TRAP-type C4-dica 22.3 1.9E+02 0.0041 24.0 4.8 38 73-110 243-280 (332)
52 cd07087 ALDH_F3-13-14_CALDH-li 22.3 2.6E+02 0.0055 23.7 5.7 43 68-110 5-47 (426)
53 cd07085 ALDH_F6_MMSDH Methylma 21.7 2.5E+02 0.0054 24.1 5.6 39 70-108 47-85 (478)
54 PF03480 SBP_bac_7: Bacterial 20.9 1.8E+02 0.0038 23.0 4.3 32 75-106 214-245 (286)
55 PF05388 Carbpep_Y_N: Carboxyp 20.4 1.9E+02 0.0042 20.3 3.9 29 66-94 45-73 (113)
56 cd07152 ALDH_BenzADH NAD-depen 20.0 2.9E+02 0.0062 23.5 5.6 43 68-110 20-62 (443)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.92 E-value=1.6e-24 Score=149.34 Aligned_cols=88 Identities=44% Similarity=0.701 Sum_probs=82.1
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhCCChHhhHHHHHHHHHHH
Q 032199 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96 (145)
Q Consensus 19 k~~~~~~k~~~k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k 96 (145)
+-|.+.+++++++.+||+.|+||+|||+||+.++|..|..+||+ ++ +.+|+++||++|+.||+++|.+|+++|..++
T Consensus 4 ~~~~~~~k~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~-~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk 82 (94)
T PTZ00199 4 KQGKVLVRKNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPE-LAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDK 82 (94)
T ss_pred cccCccccccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44666777777889999999999999999999999999999999 65 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 032199 97 VEYEKDMKNYN 107 (145)
Q Consensus 97 ~~y~~e~~~y~ 107 (145)
.+|..+|.+|.
T Consensus 83 ~rY~~e~~~Y~ 93 (94)
T PTZ00199 83 VRYEKEKAEYA 93 (94)
T ss_pred HHHHHHHHHHh
Confidence 99999999995
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.84 E-value=7.7e-21 Score=126.02 Aligned_cols=72 Identities=26% Similarity=0.430 Sum_probs=69.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 032199 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (145)
Q Consensus 37 ~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 109 (145)
.|+||+||||||+++.|..|+.+||+ +++.+|+++||.+|+.|++++|++|.++|..++.+|..++++|+-.
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~ 72 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPG-LTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKYT 72 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCccc
Confidence 48999999999999999999999999 8999999999999999999999999999999999999999999754
No 3
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.83 E-value=2.2e-20 Score=122.43 Aligned_cols=69 Identities=33% Similarity=0.552 Sum_probs=67.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032199 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (145)
Q Consensus 38 PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 107 (145)
+|||+|||+||++++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++.+|..++++|+
T Consensus 2 iKrP~naf~~F~~~~r~~~~~~~p~-~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~ 70 (72)
T cd01388 2 IKRPMNAFMLFSKRHRRKVLQEYPL-KENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYK 70 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 6899999999999999999999999 89999999999999999999999999999999999999999985
No 4
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.83 E-value=5.8e-20 Score=118.44 Aligned_cols=69 Identities=42% Similarity=0.758 Sum_probs=65.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032199 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (145)
Q Consensus 38 PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 107 (145)
|+||+|||+||+.+++..|+.+||+ +++.+|+++||++|++||+++|++|.+.|..++..|..++.+|+
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~-~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPD-LSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTT-STHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcc-cccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999 89999999999999999999999999999999999999999995
No 5
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.81 E-value=1.9e-19 Score=114.93 Aligned_cols=65 Identities=54% Similarity=0.844 Sum_probs=63.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHH
Q 032199 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 103 (145)
Q Consensus 38 PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 103 (145)
|++|+|||++|++++|..++.+||+ +++.+|++.||.+|++||+++|++|.+.|..++.+|..+|
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~-~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPD-ASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999 8999999999999999999999999999999999999887
No 6
>smart00398 HMG high mobility group.
Probab=99.81 E-value=2.5e-19 Score=115.07 Aligned_cols=70 Identities=49% Similarity=0.806 Sum_probs=67.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032199 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (145)
Q Consensus 37 ~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 107 (145)
+|++|+|||+||+.++|..+..+||+ +++.+|++.||.+|+.|++++|+.|.+.|..++.+|..++..|+
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~-~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPD-LSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999 89999999999999999999999999999999999999999884
No 7
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.80 E-value=4.4e-19 Score=116.53 Aligned_cols=72 Identities=46% Similarity=0.807 Sum_probs=63.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032199 35 PNKPKRPASAFFVFMEEFREQYKKD-HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (145)
Q Consensus 35 ~~~PKrP~say~lF~~e~r~~vk~~-~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 107 (145)
|++||+|+|||+||+.+++..++.. ++. .++.++++.|+..|++||+++|.+|+++|..++.+|..+|..|+
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~-~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~~ 73 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQK-QSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEWN 73 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T--SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6789999999999999999999988 665 79999999999999999999999999999999999999999985
No 8
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.77 E-value=8.8e-19 Score=134.77 Aligned_cols=95 Identities=33% Similarity=0.702 Sum_probs=87.1
Q ss_pred cCCCCCccCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHH
Q 032199 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96 (145)
Q Consensus 17 ~~k~~~~~~k~~~k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k 96 (145)
..+...++.+..++..+||+.||||+|||++|+.++|+.|+..+|. +++.+|++++|++|++|++++|++|...|..++
T Consensus 50 ~~p~~~~ksk~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~-l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~ 128 (211)
T COG5648 50 TKPRKKTKSKRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPK-LTFGEVGKLLSEKWKELTDEEKEPYYKEANSDR 128 (211)
T ss_pred cccccchHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHhccHhhhhhHHHHHhhHH
Confidence 3344444446778899999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCc
Q 032199 97 VEYEKDMKNYNRRQPE 112 (145)
Q Consensus 97 ~~y~~e~~~y~~~~~~ 112 (145)
.+|..++..|....+.
T Consensus 129 erYq~ek~~y~~k~~~ 144 (211)
T COG5648 129 ERYQREKEEYNKKLPN 144 (211)
T ss_pred HHHHHHHHhhhcccCC
Confidence 9999999999998876
No 9
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.74 E-value=1.8e-17 Score=105.29 Aligned_cols=65 Identities=51% Similarity=0.812 Sum_probs=63.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHH
Q 032199 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 103 (145)
Q Consensus 38 PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 103 (145)
|++|+|||+||+.+.+..+..++|+ +++.+|++.||.+|+.|++++|++|.+.|..++.+|..++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~-~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~ 65 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPG-LSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999999999 8999999999999999999999999999999999999875
No 10
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.71 E-value=1.4e-16 Score=109.13 Aligned_cols=76 Identities=47% Similarity=0.788 Sum_probs=72.3
Q ss_pred CC--CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHH-HHHhcC
Q 032199 34 DP--NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK-NYNRRQ 110 (145)
Q Consensus 34 d~--~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~-~y~~~~ 110 (145)
|+ +.|++|++||++|+.+.+..++.+||+ +++.+|++++|++|.+|++++|.+|+..|..++.+|..+|. .|+...
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~-~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~~~~ 95 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPG-LSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYKASL 95 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55 599999999999999999999999999 99999999999999999999999999999999999999999 888654
No 11
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=99.66 E-value=1.5e-16 Score=135.87 Aligned_cols=81 Identities=46% Similarity=0.720 Sum_probs=75.5
Q ss_pred CccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHH
Q 032199 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (145)
Q Consensus 25 ~k~~~k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 104 (145)
+.+..++.+||+.||||+||||||.+..|..|+.+ + +++++|++.+|++|+.|+. |.+|++.|+.++++|+.+|.
T Consensus 523 ~~k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--g-i~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~ 597 (615)
T KOG0526|consen 523 KKKKGKKKKDPNAPKRATSAYMLWLNASRESIKED--G-ISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMK 597 (615)
T ss_pred cccCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--C-chHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHH
Confidence 34777889999999999999999999999999988 5 8999999999999999999 99999999999999999999
Q ss_pred HHHhcC
Q 032199 105 NYNRRQ 110 (145)
Q Consensus 105 ~y~~~~ 110 (145)
+|+...
T Consensus 598 ~yk~g~ 603 (615)
T KOG0526|consen 598 EYKNGQ 603 (615)
T ss_pred hhcCCC
Confidence 999444
No 12
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.63 E-value=3.8e-16 Score=128.61 Aligned_cols=83 Identities=30% Similarity=0.553 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 032199 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (145)
Q Consensus 30 k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 109 (145)
.........|||+||||+|++..|.+|-.++|. +-+.||++.||.+|+.|++++|.+|+++|++++..|++++++|+-+
T Consensus 55 ~~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~-mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKYR 133 (331)
T KOG0527|consen 55 KDKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPK-MHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKYR 133 (331)
T ss_pred cCCCCccccCCCcchhhhhhHHHHHHHHHhCcc-hhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCcccc
Confidence 345567789999999999999999999999999 8999999999999999999999999999999999999999999976
Q ss_pred CCch
Q 032199 110 QPEE 113 (145)
Q Consensus 110 ~~~~ 113 (145)
-..+
T Consensus 134 PRRK 137 (331)
T KOG0527|consen 134 PRRK 137 (331)
T ss_pred cccc
Confidence 6553
No 13
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=99.27 E-value=1.4e-11 Score=100.11 Aligned_cols=82 Identities=24% Similarity=0.532 Sum_probs=77.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 032199 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (145)
Q Consensus 30 k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 109 (145)
...+.|.+|-+|+-+||.|++..+++|++.||+ +.+.+|-++||.||..|++++|+-|+..++..+..|.+.|..|...
T Consensus 57 t~pkpPkppekpl~pymrySrkvWd~VkA~nPe-~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~s 135 (410)
T KOG4715|consen 57 TRPKPPKPPEKPLMPYMRYSRKVWDQVKASNPE-LKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNS 135 (410)
T ss_pred cCCCCCCCCCcccchhhHHhhhhhhhhhccCcc-hHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 344568888999999999999999999999999 9999999999999999999999999999999999999999999988
Q ss_pred CCc
Q 032199 110 QPE 112 (145)
Q Consensus 110 ~~~ 112 (145)
..+
T Consensus 136 p~y 138 (410)
T KOG4715|consen 136 PAY 138 (410)
T ss_pred chH
Confidence 766
No 14
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=99.26 E-value=1.1e-11 Score=101.45 Aligned_cols=76 Identities=24% Similarity=0.414 Sum_probs=71.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 032199 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEE 113 (145)
Q Consensus 37 ~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~~ 113 (145)
..|+|+|||||||+++|..|..++-- ....+|..+||.+|..||.+|.++|.++|.++++-|.+-+..|-++...-
T Consensus 191 hiKKPLNAFmlyMKEmRa~vvaEctl-KeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSARdNYg 266 (421)
T KOG3248|consen 191 HIKKPLNAFMLYMKEMRAKVVAECTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG 266 (421)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhh
Confidence 67999999999999999999998875 57789999999999999999999999999999999999999999988773
No 15
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=98.86 E-value=7e-10 Score=94.42 Aligned_cols=80 Identities=24% Similarity=0.429 Sum_probs=71.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 032199 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP 111 (145)
Q Consensus 32 ~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~ 111 (145)
..-+...|||+||||+|.++.|-.|...+|+ .-+..|+++||.+|+.|+..+|++|.+.-.++-..|.+.+++|+-+..
T Consensus 320 ~ss~PHIKRPMNAFMVWAkDERRKILqA~PD-MHNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYrYkPR 398 (511)
T KOG0528|consen 320 ASSEPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYRYKPR 398 (511)
T ss_pred CCCCccccCCcchhhcccchhhhhhhhcCcc-ccccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccccCCC
Confidence 3445577999999999999999999999999 677899999999999999999999998888888899999999997665
Q ss_pred c
Q 032199 112 E 112 (145)
Q Consensus 112 ~ 112 (145)
.
T Consensus 399 P 399 (511)
T KOG0528|consen 399 P 399 (511)
T ss_pred C
Confidence 5
No 16
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=98.60 E-value=5e-08 Score=85.98 Aligned_cols=81 Identities=22% Similarity=0.367 Sum_probs=72.8
Q ss_pred CCccCccCCCCCCCCCCCCCCCCHHHHHHHHHH--HHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHH
Q 032199 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFR--EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98 (145)
Q Consensus 21 ~~~~~k~~~k~~~d~~~PKrP~say~lF~~e~r--~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~ 98 (145)
....+..+....++....++|+|||++|++.+| ..+...||+ ..++.|+++||+.|-.|.++||+.|.++|.+.++.
T Consensus 165 sSs~kdgrspnkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn-~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~A 243 (683)
T KOG2746|consen 165 SSSEKDGRSPNKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPN-QDNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEA 243 (683)
T ss_pred cccccccCCCCcCcchhhhhhhHHHHHHHhhcCCccchhccCcc-ccchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHH
Confidence 333345556677888899999999999999999 889999999 89999999999999999999999999999999999
Q ss_pred HHHH
Q 032199 99 YEKD 102 (145)
Q Consensus 99 y~~e 102 (145)
|-++
T Consensus 244 hfka 247 (683)
T KOG2746|consen 244 HFKA 247 (683)
T ss_pred Hhhh
Confidence 9887
No 17
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=98.24 E-value=1.3e-05 Score=53.17 Aligned_cols=75 Identities=19% Similarity=0.377 Sum_probs=61.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 032199 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112 (145)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 112 (145)
..|..|-+|--||.+.......+.+++ -...+ .+.+...|.+|++.+|.+|+..|.++..+|+.+|.+|+..++.
T Consensus 2 ~lPE~PKt~qe~Wqq~vi~dYla~~~~-dr~K~-~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~~~~~ 76 (85)
T PF14887_consen 2 KLPETPKTAQEIWQQSVIGDYLAKFRN-DRKKA-LKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRSAPAD 76 (85)
T ss_dssp --S----THHHHHHHHHHHHHHHHTTS-THHHH-HHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-CCCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhH-hHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 358889999999999999999999987 45545 5589999999999999999999999999999999999987765
No 18
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=97.46 E-value=0.00032 Score=53.15 Aligned_cols=46 Identities=28% Similarity=0.442 Sum_probs=41.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCC
Q 032199 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81 (145)
Q Consensus 35 ~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls 81 (145)
|.+-.|-+|||..|+++....|+..+|+ +++.|+....+..|...+
T Consensus 119 PEKRqR~psaYn~f~k~ei~rik~~~p~-ishkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 119 PEKRQRVPSAYNRFMKEEIQRIKAENPD-ISHKEAFSAAAKNWAHFP 164 (170)
T ss_pred ccccCCCchhHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHhhhhCc
Confidence 3344577899999999999999999999 999999999999998765
No 19
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=97.04 E-value=0.00054 Score=53.32 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=63.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHH
Q 032199 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (145)
Q Consensus 32 ~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 104 (145)
-....+|..|..+|+-+....|+.+...+|+ .+..+++++++..|++|++.-+..|.+.+..++..|...++
T Consensus 138 y~~k~~~~~~~~~~~e~~~~~r~~~~~~~~~-~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~ 209 (211)
T COG5648 138 YNKKLPNKAPIGPFIENEPKIRPKVEGPSPD-KALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYP 209 (211)
T ss_pred hhcccCCCCCCchhhhccHHhccccCCCCcc-hhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhcc
Confidence 3345577888889999999999999889998 78999999999999999999999999999999999987654
No 20
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.02 E-value=0.0046 Score=47.10 Aligned_cols=49 Identities=29% Similarity=0.435 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHH
Q 032199 42 ASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (145)
Q Consensus 42 ~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~ 95 (145)
-+||+=|+.+++. .|.+ ++..|+....+..|..|++.+|..|..++...
T Consensus 83 nnaYLNFLReFRr----kh~~-L~p~dlI~~AAraW~rLSe~eK~rYrr~~~~~ 131 (183)
T PF06382_consen 83 NNAYLNFLREFRR----KHCG-LSPQDLIQRAARAWCRLSEAEKNRYRRMAPSV 131 (183)
T ss_pred chHHHHHHHHHHH----HccC-CCHHHHHHHHHHHHHhCCHHHHHHHHhhcchh
Confidence 5789999999754 6677 89999999999999999999999999976643
No 21
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.21 E-value=0.0097 Score=37.02 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCC
Q 032199 42 ASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81 (145)
Q Consensus 42 ~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls 81 (145)
++.|-+|.+-.|+.|...||+ +....|...++..|++-+
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk-~~~sKl~~l~~AKwrEF~ 51 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPK-APMSKLMMLLQAKWREFQ 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCC-CcHHHHHHHHHHHHHHHH
Confidence 356889999999999999999 899999999999998754
No 22
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=93.84 E-value=0.15 Score=39.70 Aligned_cols=56 Identities=20% Similarity=0.327 Sum_probs=39.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHH
Q 032199 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94 (145)
Q Consensus 32 ~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~ 94 (145)
......++||+|+||+|+.=+- ...|+ ..-.+++..|+.+|..=+- |..|.-.|..
T Consensus 38 ~~~~~~~kr~lN~Fm~FRsyy~----~~~~~-~~Qk~~S~~l~~lW~~dp~--k~~W~l~ak~ 93 (201)
T PF04769_consen 38 KRSPEKAKRPLNGFMAFRSYYS----PIFPP-LPQKELSGILTKLWEKDPF--KNKWSLMAKA 93 (201)
T ss_pred cccccccccchhHHHHHHHHHH----hhcCC-cCHHHHHHHHHHHHhCCcc--HhHHHHHhhh
Confidence 3345568999999999987664 34455 6778999999999987332 4555555443
No 23
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=93.69 E-value=0.12 Score=37.32 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=41.1
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChH
Q 032199 36 NKP-KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83 (145)
Q Consensus 36 ~~P-KrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~ 83 (145)
..| +|-.-||.-|...+.+.|+.++|+ +..+++...|-..|...|++
T Consensus 70 rHPErR~KAAy~afeE~~Lp~lK~E~Pg-LrlsQ~kq~l~K~w~KSPeN 117 (122)
T PF06244_consen 70 RHPERRMKAAYKAFEERRLPELKEENPG-LRLSQYKQMLWKEWQKSPEN 117 (122)
T ss_pred CCcchhHHHHHHHHHHHHhHHHHhhCCC-chHHHHHHHHHHHHhcCCCC
Confidence 344 555678999999999999999999 99999999999999987765
No 24
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=89.36 E-value=1.2 Score=34.41 Aligned_cols=47 Identities=17% Similarity=0.433 Sum_probs=41.2
Q ss_pred CCHHHHHH-HHHHHhhCCChHhhHHHHHHHHH-HHHHHHHHHHHHHhcC
Q 032199 64 KSVAAVGK-AGGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNRRQ 110 (145)
Q Consensus 64 ~~~~ei~k-~l~~~Wk~ls~~eK~~y~~~A~~-~k~~y~~e~~~y~~~~ 110 (145)
.++..|++ .||..|+.+++++|+.|...... ....|-..+..|....
T Consensus 64 ~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y~~~~ 112 (198)
T TIGR03481 64 FDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYAGER 112 (198)
T ss_pred CCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCce
Confidence 67888876 68999999999999999998888 7889999999998654
No 25
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=89.14 E-value=1.2 Score=34.63 Aligned_cols=50 Identities=22% Similarity=0.332 Sum_probs=41.5
Q ss_pred CCCCCHHHHHH-HHHHHhhCCChHhhHHHHHHHHH-HHHHHHHHHHHHHhcCC
Q 032199 61 PKNKSVAAVGK-AGGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNRRQP 111 (145)
Q Consensus 61 p~~~~~~ei~k-~l~~~Wk~ls~~eK~~y~~~A~~-~k~~y~~e~~~y~~~~~ 111 (145)
|. .++..+++ .||..|+.+++++|+.|.+.... ...-|-..+..|..+..
T Consensus 66 p~-~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~~q~i 117 (211)
T PRK15117 66 PY-VQVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYHGQTY 117 (211)
T ss_pred cc-CCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 44 57777766 68999999999999999988776 66789999999987644
No 26
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.40 E-value=1.8 Score=33.65 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=45.9
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHH
Q 032199 36 NKP-KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93 (145)
Q Consensus 36 ~~P-KrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~ 93 (145)
..| +|=.-||.-|-....+.|+.++|+ +.++++-.+|-.+|..-|++ +|.+++.
T Consensus 162 rHPEkRmrAA~~afEe~~LPrLK~e~P~-lrlsQ~Kqll~Kew~KsPDN---P~Nq~~~ 216 (221)
T KOG3223|consen 162 RHPEKRMRAAFKAFEEARLPRLKKENPG-LRLSQYKQLLKKEWQKSPDN---PFNQAAV 216 (221)
T ss_pred cChHHHHHHHHHHHHHhhchhhhhcCCC-ccHHHHHHHHHHHHhhCCCC---hhhHHhh
Confidence 455 566778999999999999999999 99999999999999998887 6666543
No 27
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=82.46 E-value=2.2 Score=31.67 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=36.0
Q ss_pred CCHHHHHHH-HHHHhhCCChHhhHHHHHHHHH-HHHHHHHHHHHHHhcC
Q 032199 64 KSVAAVGKA-GGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNRRQ 110 (145)
Q Consensus 64 ~~~~ei~k~-l~~~Wk~ls~~eK~~y~~~A~~-~k~~y~~e~~~y~~~~ 110 (145)
+.+..|++. ||..|+.|++++++.|...... ....|-..+..|....
T Consensus 38 ~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~~~~ 86 (170)
T PF05494_consen 38 FDFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYSGQS 86 (170)
T ss_dssp B-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-SS-E
T ss_pred CCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 678887765 7889999999999999988776 6678889999998633
No 28
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.49 E-value=6.7 Score=30.64 Aligned_cols=41 Identities=12% Similarity=0.278 Sum_probs=36.2
Q ss_pred HHHHHhhCCChHhhHHHHHHHHH-HHHHHHHHHHHHHhcCCc
Q 032199 72 AGGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNRRQPE 112 (145)
Q Consensus 72 ~l~~~Wk~ls~~eK~~y~~~A~~-~k~~y~~e~~~y~~~~~~ 112 (145)
.||.-|+.+++++++.|...... ....|-..|..|+.+...
T Consensus 79 vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~~Y~~q~~~ 120 (202)
T COG2854 79 VLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLDYKGQTLK 120 (202)
T ss_pred HhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCce
Confidence 48899999999999999988776 667899999999988765
No 29
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=65.33 E-value=5.7 Score=22.96 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=16.5
Q ss_pred CHHHHHHHHH-HHhhCCChHhhHHHHHHHHH
Q 032199 65 SVAAVGKAGG-EKWKSMSEADKAPYVAKAEK 94 (145)
Q Consensus 65 ~~~ei~k~l~-~~Wk~ls~~eK~~y~~~A~~ 94 (145)
++.+++.-++ +.|..|.+.+|..|.+.-.+
T Consensus 2 tf~Dvav~fs~eEW~~L~~~Qk~ly~dvm~E 32 (41)
T PF01352_consen 2 TFEDVAVYFSQEEWELLDPAQKNLYRDVMLE 32 (41)
T ss_dssp -----TT---HHHHHTS-HHHHHHHHHHHHH
T ss_pred eEEEEEEEcChhhcccccceecccchhHHHH
Confidence 3455555555 56999999999999876543
No 30
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=65.04 E-value=32 Score=23.88 Aligned_cols=42 Identities=14% Similarity=0.350 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhCCChHhhHHHHHHHHH-------HHHHHHHHHHHHHhc
Q 032199 68 AVGKAGGEKWKSMSEADKAPYVAKAEK-------RKVEYEKDMKNYNRR 109 (145)
Q Consensus 68 ei~k~l~~~Wk~ls~~eK~~y~~~A~~-------~k~~y~~e~~~y~~~ 109 (145)
++..-+...|..|++..+..+...|.. ...++...|..|..-
T Consensus 11 ~~L~pl~~~W~~l~~~qr~k~l~~a~r~~~mspeqq~r~~~rm~~W~~L 59 (107)
T PF11304_consen 11 QALAPLAERWNSLPPEQRRKWLQIAERWPSMSPEQQQRLRERMRRWAAL 59 (107)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 344555566666666666555555533 445555555555443
No 31
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=52.25 E-value=12 Score=32.75 Aligned_cols=7 Identities=14% Similarity=0.411 Sum_probs=6.4
Q ss_pred cceeccc
Q 032199 137 VFFWGCF 143 (145)
Q Consensus 137 ~f~~~~~ 143 (145)
-||++||
T Consensus 293 lyC~vCn 299 (508)
T KOG0717|consen 293 LYCVVCN 299 (508)
T ss_pred eEEeecc
Confidence 8999997
No 32
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=52.16 E-value=48 Score=27.67 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=31.9
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHH
Q 032199 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (145)
Q Consensus 56 vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~ 95 (145)
+-...|. ++.-|-..+.-+.|...|.-+|..|+++|++-
T Consensus 243 Lar~kPt-MtlEeGl~ra~qEW~~~SnfdRmifyemaekF 281 (328)
T PF12881_consen 243 LARLKPT-MTLEEGLWRAVQEWQHTSNFDRMIFYEMAEKF 281 (328)
T ss_pred HHhcCCC-ccHHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 3344566 67778788888999999999999999999874
No 33
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=50.78 E-value=31 Score=26.62 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHH
Q 032199 44 AFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87 (145)
Q Consensus 44 ay~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~ 87 (145)
+=++|...+.+.+...|. ---+..+|...|+.||+.-++.
T Consensus 131 acLVFL~~~f~~F~~~~d----eeK~v~Il~KTw~KMS~~g~~~ 170 (185)
T PF13875_consen 131 ACLVFLEYYFEDFAAKHD----EEKIVDILRKTWRKMSERGHEA 170 (185)
T ss_pred HHHHhHHHHHHHHHhcCC----HHHHHHHHHHHHHHCCHHHHHH
Confidence 467899999999888773 3578889999999999987753
No 34
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=44.22 E-value=36 Score=20.41 Aligned_cols=24 Identities=25% Similarity=0.620 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHhhCCChHhhHHHHHHHH
Q 032199 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAE 93 (145)
Q Consensus 65 ~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~ 93 (145)
+..||.. |..|++++|........
T Consensus 23 T~dEI~~-----W~~~s~~er~~i~~~l~ 46 (51)
T PF06945_consen 23 TLDEIRD-----WKSMSDDERRAILARLR 46 (51)
T ss_pred cHHHHHH-----HhhCCHHHHHHHHHHHH
Confidence 5667766 99999999877665443
No 35
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=38.38 E-value=1.1e+02 Score=19.90 Aligned_cols=53 Identities=15% Similarity=0.325 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCC----hHhhHHHHHHHHHHHHHH
Q 032199 45 FFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS----EADKAPYVAKAEKRKVEY 99 (145)
Q Consensus 45 y~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls----~~eK~~y~~~A~~~k~~y 99 (145)
|-||.+.....+....|+..++..-.+ -+.|+.|. ++-+..|.+........|
T Consensus 30 YalyKQAt~Gd~~~~~P~~~d~~~~~K--~~AW~~l~gms~~eA~~~Yi~~v~~~~~~~ 86 (87)
T PF00887_consen 30 YALYKQATHGDCDTPRPGFFDIEGRAK--WDAWKALKGMSKEEAMREYIELVEELIPKY 86 (87)
T ss_dssp HHHHHHHHTSS--S-CTTTTCHHHHHH--HHHHHTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCCCcchhHHHHHH--HHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 777777766656566676334444443 35688765 444666777766665554
No 36
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=37.90 E-value=1e+02 Score=25.83 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhC-------CCC-----CCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHH
Q 032199 48 FMEEFREQYKKDH-------PKN-----KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99 (145)
Q Consensus 48 F~~e~r~~vk~~~-------p~~-----~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y 99 (145)
|+...|.++..-. |+. .+...+.+.+.++|..||++.|+.|-+.+..+...-
T Consensus 188 f~D~lR~EL~~fGV~VsiiePG~f~T~l~~~~~~~~~~~~~w~~l~~e~k~~YGedy~~~~~~~ 251 (322)
T KOG1610|consen 188 FSDSLRRELRPFGVKVSIIEPGFFKTNLANPEKLEKRMKEIWERLPQETKDEYGEDYFEDYKKS 251 (322)
T ss_pred HHHHHHHHHHhcCcEEEEeccCccccccCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 6766676664321 331 245788999999999999999999998877664433
No 37
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=33.79 E-value=1.1e+02 Score=26.26 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032199 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (145)
Q Consensus 68 ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 110 (145)
+.++.....|+.++..+|..+...+....+.+..++.......
T Consensus 6 ~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~E 48 (439)
T cd07081 6 AAAKVAQQGLSCKSQEMVDLIFRAAAEAAEDARIDLAKLAVSE 48 (439)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667789999999999999999999999999998876544
No 38
>PRK10236 hypothetical protein; Provisional
Probab=33.49 E-value=47 Score=26.62 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.3
Q ss_pred HHHHHHHHhhCCChHhhHHHHHHHHH
Q 032199 69 VGKAGGEKWKSMSEADKAPYVAKAEK 94 (145)
Q Consensus 69 i~k~l~~~Wk~ls~~eK~~y~~~A~~ 94 (145)
+.+.+...|..||+++++.+.+.-..
T Consensus 118 l~kll~~a~~kms~eE~~~L~~~l~~ 143 (237)
T PRK10236 118 LEQFLRNTWKKMDEEHKQEFLHAVDA 143 (237)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHhh
Confidence 47889999999999999888765444
No 39
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=32.94 E-value=1.4e+02 Score=20.99 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032199 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (145)
Q Consensus 68 ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 110 (145)
+-...|-..|+.|+++++.............|..-+.+|-.+.
T Consensus 87 ~~~~~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (135)
T PRK09706 87 EDQKELLELFDALPESEQDAQLSEMRARVENFNKLFEELLKAR 129 (135)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999998888887654
No 40
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.92 E-value=54 Score=28.50 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=28.8
Q ss_pred CCChHhhHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 032199 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEE 113 (145)
Q Consensus 79 ~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~~ 113 (145)
++.+.+|++|++..+.....|.++..+|+.++++.
T Consensus 268 E~qe~ek~kyqeEfe~~q~elek~k~efkk~hpd~ 302 (497)
T KOG3838|consen 268 EMQELEKAKYQEEFEWAQLELEKRKDEFKKSHPDA 302 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHhhhccCCchh
Confidence 34556888999999999899999988998888874
No 41
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=29.00 E-value=1.7e+02 Score=22.13 Aligned_cols=40 Identities=10% Similarity=0.284 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032199 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (145)
Q Consensus 68 ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 108 (145)
++.+.-.++..-|+|++|..|.+..+.-...+.. +..+..
T Consensus 112 em~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~-~~~~q~ 151 (166)
T PRK10363 112 EMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRD-VTQWQK 151 (166)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHhcCc
Confidence 4566677899999999999999888887777754 555443
No 42
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=28.94 E-value=1.4e+02 Score=22.30 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCChHhhHHHHHHHHHHHHHHH
Q 032199 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 100 (145)
Q Consensus 70 ~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~ 100 (145)
.+...+++..|++++|..|.+..++-..+..
T Consensus 120 ~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~ 150 (162)
T PRK12751 120 AKVRNQMYNLLTPEQKEALNKKHQERIEKLQ 150 (162)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999988776655553
No 43
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=26.44 E-value=2e+02 Score=21.64 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=26.5
Q ss_pred HHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHH
Q 032199 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 103 (145)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 103 (145)
+...+++..|++++|+.|.+.-..-...|.+.+
T Consensus 128 ~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~ 160 (170)
T PRK12750 128 EKRHQMLSILTPEQKAKFQELQQERMQECQDKM 160 (170)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568999999999999998887777777666
No 44
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=25.80 E-value=1.5e+02 Score=23.01 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=21.6
Q ss_pred HHHhhCCChHhhHHHHHHHHHHHHHHHH
Q 032199 74 GEKWKSMSEADKAPYVAKAEKRKVEYEK 101 (145)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~A~~~k~~y~~ 101 (145)
...|..||++.|+...+.+...-.....
T Consensus 213 ~~~~~~L~~e~q~~i~~a~~~~~~~~~~ 240 (257)
T TIGR00787 213 KAFWKSLPPDLQAVVKEAAKEAGEYQRK 240 (257)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999998887776444433
No 45
>PF15368 BioT2: Spermatogenesis family BioT2
Probab=25.58 E-value=13 Score=28.03 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=12.4
Q ss_pred CCCCccccceecccCC
Q 032199 130 DEEGSGEVFFWGCFDF 145 (145)
Q Consensus 130 ~~e~~~e~f~~~~~~~ 145 (145)
.-.++...|+++||+|
T Consensus 124 svgdD~~SFL~~CS~f 139 (170)
T PF15368_consen 124 SVGDDMNSFLLCCSQF 139 (170)
T ss_pred cccccHHHHHHHHHHH
Confidence 3445688999999975
No 46
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=25.15 E-value=2e+02 Score=24.83 Aligned_cols=43 Identities=5% Similarity=0.123 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032199 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (145)
Q Consensus 68 ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 110 (145)
+.++.....|+.+|..+|..+...+.....++..++.......
T Consensus 6 ~~A~~A~~~W~~~~~~eR~~~L~~~a~~l~~~~eela~~~~~E 48 (436)
T cd07122 6 ERARKAQREFATFSQEQVDKIVEAVAWAAADAAEELAKMAVEE 48 (436)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566789999999999999999999899999998876543
No 47
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=24.77 E-value=1.9e+02 Score=24.78 Aligned_cols=43 Identities=7% Similarity=-0.065 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032199 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (145)
Q Consensus 68 ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 110 (145)
+.++.....|+.++..+|..+..........+..++..-....
T Consensus 5 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e 47 (443)
T cd07132 5 RRAREAFSSGKTRPLEFRIQQLEALLRMLEENEDEIVEALAKD 47 (443)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4556667789999999999999999999999998888766543
No 48
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=24.14 E-value=2.1e+02 Score=24.36 Aligned_cols=43 Identities=7% Similarity=-0.067 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 032199 67 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (145)
Q Consensus 67 ~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 109 (145)
-+.++.....|+.++..+|..+..........+..++......
T Consensus 4 ~~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~ 46 (434)
T cd07133 4 LERQKAAFLANPPPSLEERRDRLDRLKALLLDNQDALAEAISA 46 (434)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778999999999999999999999999988876543
No 49
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=23.84 E-value=1.9e+02 Score=22.95 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHH--------------------------------hCCCCCCHHHHHHHHHHHhhCCChHhhHH
Q 032199 43 SAFFVFMEEFREQYKK--------------------------------DHPKNKSVAAVGKAGGEKWKSMSEADKAP 87 (145)
Q Consensus 43 say~lF~~e~r~~vk~--------------------------------~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~ 87 (145)
+-|.+|...+...+-. .+.. .++.-+.+.+.+....|++++|..
T Consensus 22 tLY~lf~~ryL~kLs~~s~~a~a~C~IhIG~I~g~~k~C~v~V~N~C~sna~-~sf~lll~Al~Et~~~Lp~~qK~~ 97 (226)
T PHA02662 22 SLYDVFLARFLRRLAARAAPASAACAVRVGAVRGRLRNCELVVLNRCHTDAA-DALALASAALAETLAELPRADRLA 97 (226)
T ss_pred hHHHHHHHHHHHHHHhccCccccccceEEeeEeeecCCceEEEEecccCCHH-HHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4499999999877641 1122 457778899999999999998854
No 50
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=22.72 E-value=2.2e+02 Score=18.31 Aligned_cols=33 Identities=9% Similarity=0.260 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 032199 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76 (145)
Q Consensus 43 say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~ 76 (145)
+.|.=|-+.-.+.++...|+ .+..+|...+.++
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~-at~~~l~~lve~R 41 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPD-ATPTELKELVEKR 41 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TT-S-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHH
Confidence 45677777778888888998 7888887776654
No 51
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=22.27 E-value=1.9e+02 Score=24.03 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=29.8
Q ss_pred HHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032199 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (145)
Q Consensus 73 l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 110 (145)
-...|..||++.|+...+.|.+..........+.....
T Consensus 243 s~~~w~~L~~e~q~il~~aa~e~~~~~~~~~~~~e~~~ 280 (332)
T COG1638 243 SKAFWDSLPEEDQTILLEAAKEAAEEQRKLVEELEDEL 280 (332)
T ss_pred cHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999988776666665555443
No 52
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=22.26 E-value=2.6e+02 Score=23.72 Aligned_cols=43 Identities=12% Similarity=-0.086 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032199 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (145)
Q Consensus 68 ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 110 (145)
+.++..-..|+.++..+|..+...+......+..++.......
T Consensus 5 ~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e 47 (426)
T cd07087 5 ARLRETFLTGKTRSLEWRKAQLKALKRMLTENEEEIAAALYAD 47 (426)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4456666789999999999999999999899998888776543
No 53
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=21.67 E-value=2.5e+02 Score=24.14 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=31.6
Q ss_pred HHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032199 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (145)
Q Consensus 70 ~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 108 (145)
++.....|+.++..+|..+...+......+..++..-..
T Consensus 47 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~ 85 (478)
T cd07085 47 AKAAFPAWSATPVLKRQQVMFKFRQLLEENLDELARLIT 85 (478)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556799999999999999988888888888876543
No 54
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=20.89 E-value=1.8e+02 Score=22.96 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=23.0
Q ss_pred HHhhCCChHhhHHHHHHHHHHHHHHHHHHHHH
Q 032199 75 EKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (145)
Q Consensus 75 ~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 106 (145)
..|..||++.|+...+.+......+...+...
T Consensus 214 ~~w~~L~~e~q~~l~~~~~~~~~~~~~~~~~~ 245 (286)
T PF03480_consen 214 DWWDSLPDEDQEALDDAADEAEARAREYYEAE 245 (286)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999988887765555444433
No 55
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=20.36 E-value=1.9e+02 Score=20.28 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhCCChHhhHHHHHHHHH
Q 032199 66 VAAVGKAGGEKWKSMSEADKAPYVAKAEK 94 (145)
Q Consensus 66 ~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~ 94 (145)
+.-|+..+++.++.|+.+.|+.|.++...
T Consensus 45 ~~~~~~~l~e~l~~Lt~e~k~~W~E~~~~ 73 (113)
T PF05388_consen 45 LEKISKYLNEPLKSLTSEAKALWDEMMLL 73 (113)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44567778899999999999999998865
No 56
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=20.04 E-value=2.9e+02 Score=23.46 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032199 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (145)
Q Consensus 68 ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 110 (145)
+.++.....|+.++..+|..+...+......+..++.......
T Consensus 20 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e 62 (443)
T cd07152 20 ARAAAAQRAWAATPPRERAAVLRRAADLLEEHADEIADWIVRE 62 (443)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 3345566789999999999999988888888888887665443
Done!