Query 032199
Match_columns 145
No_of_seqs 107 out of 1071
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:43:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 4.1E-25 1.4E-29 153.1 11.9 86 26-112 6-91 (102)
2 1k99_A Upstream binding factor 99.9 1.2E-24 4.1E-29 150.1 9.3 83 29-112 2-84 (99)
3 2eqz_A High mobility group pro 99.9 4.8E-24 1.6E-28 143.3 11.7 79 28-107 6-86 (86)
4 1hme_A High mobility group pro 99.9 3.8E-24 1.3E-28 140.6 8.1 76 32-108 1-76 (77)
5 2e6o_A HMG box-containing prot 99.9 5.9E-24 2E-28 143.2 8.7 77 30-107 10-86 (87)
6 2lhj_A High mobility group pro 99.9 1.1E-24 3.7E-29 149.5 4.8 80 29-109 14-95 (97)
7 2crj_A SWI/SNF-related matrix- 99.9 2.1E-23 7.2E-28 141.8 11.0 78 32-110 2-79 (92)
8 1cg7_A Protein (NON histone pr 99.9 1.6E-24 5.4E-29 147.7 5.3 83 27-110 10-92 (93)
9 2cs1_A PMS1 protein homolog 1; 99.9 1.8E-23 6.2E-28 142.1 9.8 79 33-112 3-81 (92)
10 3nm9_A HMG-D, high mobility gr 99.9 3.2E-23 1.1E-27 135.1 10.1 72 35-109 1-72 (73)
11 1wgf_A Upstream binding factor 99.9 1E-23 3.5E-28 142.9 6.0 78 26-104 9-86 (90)
12 1hry_A Human SRY; DNA, DNA-bin 99.9 2.4E-23 8.2E-28 136.5 6.8 74 34-108 1-74 (76)
13 2yrq_A High mobility group pro 99.9 7.7E-23 2.6E-27 153.1 10.3 109 28-144 6-115 (173)
14 1aab_A High mobility group pro 99.9 1.3E-23 4.6E-28 140.0 5.3 78 32-110 2-81 (83)
15 1wxl_A Single-strand recogniti 99.9 1.4E-22 4.7E-27 132.2 8.1 72 35-109 1-72 (73)
16 1j46_A SRY, sex-determining re 99.9 2.3E-22 7.8E-27 134.7 8.7 76 34-110 1-76 (85)
17 4a3n_A Transcription factor SO 99.9 1.5E-22 5E-27 130.8 6.4 71 36-107 1-71 (71)
18 1ckt_A High mobility group 1 p 99.9 3.5E-22 1.2E-26 129.2 7.9 69 37-106 1-71 (71)
19 2gzk_A Sex-determining region 99.9 1E-21 3.5E-26 145.0 11.4 79 29-108 80-158 (159)
20 1wz6_A HMG-box transcription f 99.9 8.9E-23 3E-27 135.7 5.0 76 33-109 3-78 (82)
21 3tmm_A Transcription factor A, 99.9 1.5E-22 5E-27 159.1 6.3 114 31-145 35-161 (238)
22 3f27_D Transcription factor SO 99.9 4.5E-22 1.6E-26 132.4 7.6 75 34-109 3-77 (83)
23 1v64_A Nucleolar transcription 99.9 1.6E-21 5.3E-26 136.5 10.6 83 27-114 6-89 (108)
24 1gt0_D Transcription factor SO 99.9 5.7E-22 2E-26 131.1 8.0 74 36-110 1-74 (80)
25 3tq6_A Transcription factor A, 99.9 2.9E-22 9.8E-27 155.2 7.3 110 34-144 6-128 (214)
26 4euw_A Transcription factor SO 99.9 7.3E-22 2.5E-26 137.6 8.5 79 30-109 22-100 (106)
27 2lef_A LEF-1 HMG, protein (lym 99.9 9.1E-22 3.1E-26 132.0 8.5 75 36-111 1-75 (86)
28 3u2b_C Transcription factor SO 99.9 6.6E-22 2.3E-26 130.3 7.2 73 36-109 1-73 (79)
29 2yrq_A High mobility group pro 99.9 3.5E-21 1.2E-25 144.1 11.4 80 29-109 93-172 (173)
30 1i11_A Transcription factor SO 99.9 9E-22 3.1E-26 130.6 6.5 74 35-109 2-75 (81)
31 3fgh_A Transcription factor A, 99.8 4.2E-21 1.4E-25 123.1 6.8 66 36-106 1-66 (67)
32 1l8y_A Upstream binding factor 99.8 1.4E-20 4.7E-25 128.0 8.8 75 36-112 3-77 (91)
33 1v63_A Nucleolar transcription 99.8 3.7E-20 1.3E-24 128.0 10.3 78 33-113 4-81 (101)
34 2gzk_A Sex-determining region 99.8 3.7E-20 1.3E-24 136.6 7.6 102 35-145 2-103 (159)
35 2d7l_A WD repeat and HMG-box D 99.8 5.8E-20 2E-24 122.5 6.8 61 34-95 2-63 (81)
36 2cto_A Novel protein; high mob 99.8 3.6E-19 1.2E-23 121.5 4.8 69 32-103 5-76 (93)
37 2yuk_A Myeloid/lymphoid or mix 99.8 4.9E-20 1.7E-24 125.1 -0.8 68 30-102 15-84 (90)
38 3tq6_A Transcription factor A, 99.7 1.1E-19 3.7E-24 140.7 0.3 79 29-112 106-184 (214)
39 3tmm_A Transcription factor A, 99.7 1.7E-19 5.9E-24 141.5 -0.3 79 29-112 138-216 (238)
40 2qgu_A Probable signal peptide 79.5 1.6 5.6E-05 32.7 3.6 47 64-110 72-120 (211)
41 1j1d_B Troponin T, TNT; THIN f 33.4 1.1E+02 0.0037 20.4 5.8 51 47-100 28-78 (106)
42 2rr3_B OSBP, oxysterol-binding 24.8 33 0.0011 19.5 1.4 11 129-139 12-22 (47)
43 2lkw_A Membrane fusion protein 22.0 19 0.00064 17.7 -0.0 11 36-46 9-19 (26)
44 2l9z_A PR domain zinc finger p 20.7 39 0.0013 18.6 1.1 14 131-144 3-16 (39)
45 2yua_A Williams-beuren syndrom 20.5 1.7E+02 0.0058 18.4 5.2 39 50-89 36-80 (99)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.93 E-value=4.1e-25 Score=153.08 Aligned_cols=86 Identities=29% Similarity=0.514 Sum_probs=81.1
Q ss_pred ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHH
Q 032199 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (145)
Q Consensus 26 k~~~k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 105 (145)
..++++.+||+.|+||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|..++.+|..+|++
T Consensus 6 ~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 84 (102)
T 2co9_A 6 SGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPN-ATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAA 84 (102)
T ss_dssp CCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHhcCCc
Q 032199 106 YNRRQPE 112 (145)
Q Consensus 106 y~~~~~~ 112 (145)
|+..+..
T Consensus 85 Y~~~~~~ 91 (102)
T 2co9_A 85 YRASLVS 91 (102)
T ss_dssp HHHHHTS
T ss_pred HHhhccc
Confidence 9988766
No 2
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.91 E-value=1.2e-24 Score=150.11 Aligned_cols=83 Identities=30% Similarity=0.587 Sum_probs=79.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032199 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (145)
Q Consensus 29 ~k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 108 (145)
+++.+||++|+||+||||||++++|..|+.++|+ +++++|+++||++|++||+++|++|+++|..++.+|..+|..|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPE-MSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTT-SCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 032199 109 RQPE 112 (145)
Q Consensus 109 ~~~~ 112 (145)
..+.
T Consensus 81 ~~P~ 84 (99)
T 1k99_A 81 DHPD 84 (99)
T ss_dssp CCCC
T ss_pred HCCC
Confidence 8875
No 3
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=4.8e-24 Score=143.27 Aligned_cols=79 Identities=39% Similarity=0.671 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHH
Q 032199 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (145)
Q Consensus 28 ~~k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 105 (145)
+++..+||+.|+||+|||+||++++|..|+.+||+ ++ +.+|+++||++|++|++++|++|+++|..++++|..+|..
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPE-VPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTT-SCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999 65 7999999999999999999999999999999999999999
Q ss_pred HH
Q 032199 106 YN 107 (145)
Q Consensus 106 y~ 107 (145)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 84
No 4
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.90 E-value=3.8e-24 Score=140.64 Aligned_cols=76 Identities=49% Similarity=0.819 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032199 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (145)
Q Consensus 32 ~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 108 (145)
.+||+.|+||+|||+||+.++|..|+.+||+ +++.+|+++||++|++||+++|++|+++|..++.+|..+|++|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999999999999999999999 899999999999999999999999999999999999999999975
No 5
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.90 E-value=5.9e-24 Score=143.19 Aligned_cols=77 Identities=29% Similarity=0.486 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032199 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (145)
Q Consensus 30 k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 107 (145)
+..+|++.|+||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|..++++|..++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 567899999999999999999999999999999 89999999999999999999999999999999999999998885
No 6
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.90 E-value=1.1e-24 Score=149.52 Aligned_cols=80 Identities=38% Similarity=0.718 Sum_probs=76.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHH
Q 032199 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (145)
Q Consensus 29 ~k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 106 (145)
++..+||+.|+||+|||+||++++|..|+.+||+ ++ +.+|+++||++|++|++++|++|+++|..++.+|..+|..|
T Consensus 14 ~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y 92 (97)
T 2lhj_A 14 RKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPE-IAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEY 92 (97)
T ss_dssp TCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTT-STTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999 88 99999999999999999999999999999999999999999
Q ss_pred Hhc
Q 032199 107 NRR 109 (145)
Q Consensus 107 ~~~ 109 (145)
+.+
T Consensus 93 ~~~ 95 (97)
T 2lhj_A 93 AQR 95 (97)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.90 E-value=2.1e-23 Score=141.81 Aligned_cols=78 Identities=29% Similarity=0.591 Sum_probs=75.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032199 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (145)
Q Consensus 32 ~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 110 (145)
.+||++|+||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|..++.+|..+|++|+...
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~ 79 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSE 79 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 3699999999999999999999999999999 89999999999999999999999999999999999999999999754
No 8
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.90 E-value=1.6e-24 Score=147.75 Aligned_cols=83 Identities=39% Similarity=0.687 Sum_probs=78.6
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHH
Q 032199 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (145)
Q Consensus 27 ~~~k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 106 (145)
++++..+||+.|+||+|||+||++++|..|+.+||+ +++.+|+++||++|++||+++|++|+++|..++.+|..+|++|
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPD-ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTT-SCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HhcC
Q 032199 107 NRRQ 110 (145)
Q Consensus 107 ~~~~ 110 (145)
..+.
T Consensus 89 ~~~~ 92 (93)
T 1cg7_A 89 NATL 92 (93)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 9764
No 9
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=142.13 Aligned_cols=79 Identities=29% Similarity=0.442 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 032199 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112 (145)
Q Consensus 33 ~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 112 (145)
.++++||||+|||+||++++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|..++++|..+|..|..++..
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 81 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPK-TSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQ 81 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 579999999999999999999999999999 8999999999999999999999999999999999999999999988765
No 10
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.90 E-value=3.2e-23 Score=135.14 Aligned_cols=72 Identities=38% Similarity=0.733 Sum_probs=69.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 032199 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (145)
Q Consensus 35 ~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 109 (145)
+++||||+|||+|||+++|+.|+.+||+ +++++|+++||++|++|++ |++|+++|..++++|..+|++|+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPG-IKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999 8999999999999999998 9999999999999999999999875
No 11
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=1e-23 Score=142.90 Aligned_cols=78 Identities=31% Similarity=0.490 Sum_probs=72.4
Q ss_pred ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHH
Q 032199 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (145)
Q Consensus 26 k~~~k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 104 (145)
+++++..+||+.|+||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|..++.+|..+|.
T Consensus 9 ~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 9 PSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp SCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667899999999999999999999999999999 99999999999999999999999999999999999987664
No 12
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.89 E-value=2.4e-23 Score=136.47 Aligned_cols=74 Identities=27% Similarity=0.505 Sum_probs=70.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032199 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (145)
Q Consensus 34 d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 108 (145)
||+.|+||+||||||++++|..|+.+||+ +++++|+++||++|++|++++|++|.++|..++.+|..++++|+-
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 74 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSC-CSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 68999999999999999999999999999 899999999999999999999999999999999999999999864
No 13
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=7.7e-23 Score=153.14 Aligned_cols=109 Identities=30% Similarity=0.538 Sum_probs=95.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHH
Q 032199 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (145)
Q Consensus 28 ~~k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~-~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 106 (145)
.+...+||++|+||+|||+||++++|..|+.+||+. +++.+|+++||++|++|++++|++|+++|..++.+|..+|..|
T Consensus 6 ~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 85 (173)
T 2yrq_A 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 85 (173)
T ss_dssp CSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 335678999999999999999999999999999994 3899999999999999999999999999999999999999999
Q ss_pred HhcCCchhHhhhhhhhhcCCCCCCCCCccccceecccC
Q 032199 107 NRRQPEEEEESEKSMSEVNDEDDDEEGSGEVFFWGCFD 144 (145)
Q Consensus 107 ~~~~~~~~~~s~k~~~e~~d~~~~~e~~~e~f~~~~~~ 144 (145)
....... + -...++.-+..-...||+||.+
T Consensus 86 ~~~~~~~-----k---k~~kdp~~pKrP~saf~lf~~~ 115 (173)
T 2yrq_A 86 IPPKGET-----K---KKFKDPNAPKRPPSAFFLFCSE 115 (173)
T ss_dssp CCCCCCS-----S---CSCCCSSSCCCCCCHHHHHHHH
T ss_pred hhhhhhh-----c---ccccCCccccCcccHHHHHHHH
Confidence 9876531 0 1123567788889999999976
No 14
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.88 E-value=1.3e-23 Score=140.03 Aligned_cols=78 Identities=35% Similarity=0.618 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 032199 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (145)
Q Consensus 32 ~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 109 (145)
.+||++|+||+|||+||++++|..|+.+||+ ++ +.+|+++||++|++|++++|++|+++|..++.+|..+|.+|...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTT-TCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999999999 65 59999999999999999999999999999999999999999875
Q ss_pred C
Q 032199 110 Q 110 (145)
Q Consensus 110 ~ 110 (145)
.
T Consensus 81 ~ 81 (83)
T 1aab_A 81 K 81 (83)
T ss_dssp S
T ss_pred C
Confidence 4
No 15
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.88 E-value=1.4e-22 Score=132.17 Aligned_cols=72 Identities=35% Similarity=0.714 Sum_probs=69.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 032199 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (145)
Q Consensus 35 ~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 109 (145)
|++|+||+|||+||++++|..|+.+||+ +++++|+++||++|++| ++|++|+++|..++.+|..+|.+|+.+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPG-IKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6899999999999999999999999999 89999999999999999 889999999999999999999999864
No 16
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.87 E-value=2.3e-22 Score=134.74 Aligned_cols=76 Identities=28% Similarity=0.511 Sum_probs=72.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032199 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (145)
Q Consensus 34 d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 110 (145)
.|+.|+||+||||||++++|..|+.+||+ +++.+|+++||++|++||+++|++|.++|..++.+|..++++|+...
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 76 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 47899999999999999999999999999 89999999999999999999999999999999999999999998654
No 17
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.87 E-value=1.5e-22 Score=130.76 Aligned_cols=71 Identities=31% Similarity=0.597 Sum_probs=63.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032199 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (145)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 107 (145)
+.|+||+||||||++++|+.|+.+||+ +++.+|+++||++|++||+++|++|+++|..++.+|..++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 579999999999999999999999999 89999999999999999999999999999999999999999885
No 18
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.87 E-value=3.5e-22 Score=129.21 Aligned_cols=69 Identities=36% Similarity=0.667 Sum_probs=66.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHH
Q 032199 37 KPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (145)
Q Consensus 37 ~PKrP~say~lF~~e~r~~vk~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 106 (145)
.||||+|||+||++++|+.|+.+||+ ++ +.+|+++||++|++|++++|++|+++|..++.+|..+|..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTT-CCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999 75 59999999999999999999999999999999999999876
No 19
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.87 E-value=1e-21 Score=145.01 Aligned_cols=79 Identities=48% Similarity=0.795 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032199 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (145)
Q Consensus 29 ~k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 108 (145)
++..+||+.|+||+|||+|||.++|..|+.+||+ +++++|+++||++|++|++++|++|+++|..++.+|..+|.+|++
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999999999 999999999999999999999999999999999999999999985
No 20
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.87 E-value=8.9e-23 Score=135.73 Aligned_cols=76 Identities=21% Similarity=0.418 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 032199 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (145)
Q Consensus 33 ~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 109 (145)
.+++.|+||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|..++.+|..+|++|+.+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~ 78 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPR-LDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSG 78 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSS-SCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcC
Confidence 578999999999999999999999999999 8999999999999999999999999999999999999999999764
No 21
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.86 E-value=1.5e-22 Score=159.05 Aligned_cols=114 Identities=11% Similarity=0.205 Sum_probs=96.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032199 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (145)
Q Consensus 31 ~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 110 (145)
...+|++||||+|||+||++++|..|+.+||+ +++.+|+++||++|+.|++++|.+|+++|..++++|..+|..|...+
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 113 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35689999999999999999999999999999 89999999999999999999999999999999999999999999988
Q ss_pred CchhHhh-------------hhhhhhcCCCCCCCCCccccceecccCC
Q 032199 111 PEEEEES-------------EKSMSEVNDEDDDEEGSGEVFFWGCFDF 145 (145)
Q Consensus 111 ~~~~~~s-------------~k~~~e~~d~~~~~e~~~e~f~~~~~~~ 145 (145)
...+... ...+...-.|+..+..-...||+||.++
T Consensus 114 ~p~~~~~~~~~~~~k~~krk~~~kkk~~kdp~~PKrP~say~lF~~e~ 161 (238)
T 3tmm_A 114 TPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAER 161 (238)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhhhhcccchhhhcccCCCCCCCcHHHHHHHHH
Confidence 7633110 0001111235678888899999999863
No 22
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.86 E-value=4.5e-22 Score=132.37 Aligned_cols=75 Identities=31% Similarity=0.572 Sum_probs=69.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 032199 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (145)
Q Consensus 34 d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 109 (145)
.++.|+||+||||||++++|+.|+.+||+ +++++|+++||++|++|++++|++|+++|..++.+|..++++|+-.
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 77 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYR 77 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 46789999999999999999999999999 8999999999999999999999999999999999999999999754
No 23
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=1.6e-21 Score=136.52 Aligned_cols=83 Identities=23% Similarity=0.426 Sum_probs=76.6
Q ss_pred cCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHH
Q 032199 27 KSGKAAKDPNKP-KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (145)
Q Consensus 27 ~~~k~~~d~~~P-KrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 105 (145)
.+.++.+|++.| |||+|||+|||+++|..|+ + +++.+|++.||++|++|++++|++|+++|..++.+|..+|..
T Consensus 6 ~~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~-~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~ 80 (108)
T 1v64_A 6 SGQLKDKFDGRPTKPPPNSYSLYCAELMANMK----D-VPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLR 80 (108)
T ss_dssp SCCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----T-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHh----C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999 9999999999999999886 5 899999999999999999999999999999999999999999
Q ss_pred HHhcCCchh
Q 032199 106 YNRRQPEEE 114 (145)
Q Consensus 106 y~~~~~~~~ 114 (145)
|...+.+.+
T Consensus 81 Y~~~~~~~~ 89 (108)
T 1v64_A 81 FLESLPEEE 89 (108)
T ss_dssp HHHHSCHHH
T ss_pred HHhhCCHHH
Confidence 999987643
No 24
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.86 E-value=5.7e-22 Score=131.13 Aligned_cols=74 Identities=28% Similarity=0.565 Sum_probs=70.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032199 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (145)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 110 (145)
+.|+||+||||||++++|..|+.+||+ +++.+|+++||++|++||+++|++|+++|..++.+|..+|++|+...
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPK-MHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 74 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 479999999999999999999999999 89999999999999999999999999999999999999999998643
No 25
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.86 E-value=2.9e-22 Score=155.18 Aligned_cols=110 Identities=12% Similarity=0.212 Sum_probs=93.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 032199 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEE 113 (145)
Q Consensus 34 d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~~ 113 (145)
.|++|+||+|||+||++++|..|+.+||+ +++++|+++||++|++||+++|.+|+++|..++.+|..+|..|...++..
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp~ 84 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPS 84 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCHH
Confidence 47899999999999999999999999999 89999999999999999999999999999999999999999999988763
Q ss_pred hHhhh-------------hhhhhcCCCCCCCCCccccceecccC
Q 032199 114 EEESE-------------KSMSEVNDEDDDEEGSGEVFFWGCFD 144 (145)
Q Consensus 114 ~~~s~-------------k~~~e~~d~~~~~e~~~e~f~~~~~~ 144 (145)
+.... ..+...-.|+..+..-...||+||++
T Consensus 85 q~~~~~~~~~~~~~krk~~kkkk~~kdp~~PKrP~say~lF~~e 128 (214)
T 3tq6_A 85 QIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAE 128 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcchhhhhhhccccCcccccchhhhhHHH
Confidence 31100 00011123467788889999999986
No 26
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.86 E-value=7.3e-22 Score=137.64 Aligned_cols=79 Identities=29% Similarity=0.563 Sum_probs=70.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 032199 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (145)
Q Consensus 30 k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 109 (145)
...++++.|+||+||||||++++|+.|+.++|+ +++.+|+++||++|+.|++++|++|+++|..++.+|..++++|+-+
T Consensus 22 ~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 22 QSSKNKPHVKRPMNAFMVWAQAARRKLADQYPH-LHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp ------CCCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 456789999999999999999999999999999 8999999999999999999999999999999999999999999754
No 27
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=9.1e-22 Score=131.98 Aligned_cols=75 Identities=24% Similarity=0.426 Sum_probs=71.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 032199 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQP 111 (145)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~ 111 (145)
+.|+||+||||||++++|..|..+||+ +++++|+++||++|++||+++|++|+++|..++.+|..+|++|.....
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~ 75 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDN 75 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCC
Confidence 479999999999999999999999999 899999999999999999999999999999999999999999986554
No 28
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=6.6e-22 Score=130.34 Aligned_cols=73 Identities=29% Similarity=0.559 Sum_probs=70.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 032199 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (145)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 109 (145)
|.|+||+||||||++++|+.|+.++|+ +++.+|+++||++|++|++++|++|.++|..++++|..++++|+-.
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~ 73 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPD-MHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYR 73 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 579999999999999999999999999 8999999999999999999999999999999999999999999754
No 29
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=3.5e-21 Score=144.08 Aligned_cols=80 Identities=48% Similarity=0.796 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032199 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (145)
Q Consensus 29 ~k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 108 (145)
++..+||+.|+||+|||+||++++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|..++.+|..+|++|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456799999999999999999999999999999 999999999999999999999999999999999999999999987
Q ss_pred c
Q 032199 109 R 109 (145)
Q Consensus 109 ~ 109 (145)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 5
No 30
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=9e-22 Score=130.56 Aligned_cols=74 Identities=23% Similarity=0.473 Sum_probs=68.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 032199 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (145)
Q Consensus 35 ~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 109 (145)
++.|+||+||||||++++|..|+.++|+ +++.+|+++||++|++|++++|++|.++|..++.+|..++++|+-.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~ 75 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSS-CCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeec
Confidence 5789999999999999999999999999 8999999999999999999999999999999999999999998754
No 31
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.84 E-value=4.2e-21 Score=123.06 Aligned_cols=66 Identities=35% Similarity=0.633 Sum_probs=62.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHH
Q 032199 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (145)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 106 (145)
|.||||+|||+||++++|..|+..|| ++|++.||++|++||+++|.+|+++|..++.+|..+|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999976554 6999999999999999999999999999999999999988
No 32
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.83 E-value=1.4e-20 Score=127.95 Aligned_cols=75 Identities=17% Similarity=0.308 Sum_probs=71.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 032199 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112 (145)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 112 (145)
+.|+||+|||+||+++.|..++.++|+ ++.+|++.||++|++|++++|++|+++|..++.+|..+|.+|+.....
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 689999999999999999999999998 899999999999999999999999999999999999999999876543
No 33
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.83 E-value=3.7e-20 Score=128.05 Aligned_cols=78 Identities=15% Similarity=0.305 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 032199 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPE 112 (145)
Q Consensus 33 ~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 112 (145)
....+||||+|||+|||++++. ...+++ +++.+|++.||++|++|++++|++|+++|..++.+|..+|..|...+.+
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~-~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~ 80 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNH-LPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSP 80 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 3567899999999999999964 345566 7899999999999999999999999999999999999999999999877
Q ss_pred h
Q 032199 113 E 113 (145)
Q Consensus 113 ~ 113 (145)
.
T Consensus 81 ~ 81 (101)
T 1v63_A 81 Q 81 (101)
T ss_dssp T
T ss_pred H
Confidence 3
No 34
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.81 E-value=3.7e-20 Score=136.59 Aligned_cols=102 Identities=25% Similarity=0.492 Sum_probs=90.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 032199 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQPEEE 114 (145)
Q Consensus 35 ~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~~~ 114 (145)
++.|+||+|||+||+.+.+..|..+||+ +++.+|+++||++|++|++++|++|.++|..++.+|..+|+.|.......
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~~~- 79 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGET- 79 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCCCC-
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccccccc-
Confidence 6789999999999999999999999999 99999999999999999999999999999999999999999998764321
Q ss_pred HhhhhhhhhcCCCCCCCCCccccceecccCC
Q 032199 115 EESEKSMSEVNDEDDDEEGSGEVFFWGCFDF 145 (145)
Q Consensus 115 ~~s~k~~~e~~d~~~~~e~~~e~f~~~~~~~ 145 (145)
+ ....|+.-+..-...||+||+++
T Consensus 80 ----k---k~~kdp~~pKrp~say~lf~~~~ 103 (159)
T 2gzk_A 80 ----K---KKFKDPNAPKRPPSAFFLFCSEY 103 (159)
T ss_dssp ----G---GGSCCTTCCCCCCCHHHHHHHHH
T ss_pred ----c---ccccccccccccccccchhhHhh
Confidence 1 12345778888899999999863
No 35
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.8e-20 Score=122.49 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=59.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhCCChHhhHHHHHHHHHH
Q 032199 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (145)
Q Consensus 34 d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~-~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~ 95 (145)
+++.||||+||||||++++|..|+.+||+ ++ +.+|+++||++|++|++++|++|+++|..+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~-~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPD-FSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTT-CCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999 87 999999999999999999999999999887
No 36
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-19 Score=121.52 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=64.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHhhCCChHhhHHHHHHHHHHHHHHHHHH
Q 032199 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAG---GEKWKSMSEADKAPYVAKAEKRKVEYEKDM 103 (145)
Q Consensus 32 ~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l---~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 103 (145)
-.+++.||||+|||+||++++|+.|+.+ + +++.+|+++| |++|++|++++|++|+++|..++.+|..++
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~-~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--G-LPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--T-CCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--C-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 4578899999999999999999999988 5 8999999999 999999999999999999999999999876
No 37
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-20 Score=125.10 Aligned_cols=68 Identities=21% Similarity=0.350 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHH
Q 032199 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102 (145)
Q Consensus 30 k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e 102 (145)
+..+||+.|+||+|||||||+++|+.|+.+||+ ++ +++|+ ++|++|++++|++|+++|..++.+|...
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~-~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPD-WTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCS-HHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcC-ccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 455699999999999999999999999999999 88 88888 9999999999999999999999999753
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.75 E-value=1.1e-19 Score=140.68 Aligned_cols=79 Identities=32% Similarity=0.489 Sum_probs=71.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032199 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (145)
Q Consensus 29 ~k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 108 (145)
++..+||+.|+||+|||+|||+++|+.|+.. ++.+|++.||++|++|++++|++|+++|..++.+|..+|++|..
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~-----~p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGD-----SPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCS-----SHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556799999999999999999999888654 44599999999999999999999999999999999999999999
Q ss_pred cCCc
Q 032199 109 RQPE 112 (145)
Q Consensus 109 ~~~~ 112 (145)
+++.
T Consensus 181 ~~~~ 184 (214)
T 3tq6_A 181 QMIE 184 (214)
T ss_dssp HHHH
T ss_pred hCcc
Confidence 8744
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.7e-19 Score=141.55 Aligned_cols=79 Identities=30% Similarity=0.479 Sum_probs=71.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032199 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (145)
Q Consensus 29 ~k~~~d~~~PKrP~say~lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 108 (145)
++..+|++.|+||+|||+|||+++|..|+..| +.+|++.||++|++|++++|++|+++|..++++|..+|++|+.
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSS-----HHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999998886544 4599999999999999999999999999999999999999999
Q ss_pred cCCc
Q 032199 109 RQPE 112 (145)
Q Consensus 109 ~~~~ 112 (145)
+++.
T Consensus 213 k~~~ 216 (238)
T 3tmm_A 213 QMIE 216 (238)
T ss_dssp HHHH
T ss_pred hCcc
Confidence 8743
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=79.54 E-value=1.6 Score=32.70 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=38.4
Q ss_pred CCHHHHHHH-HHHHhhCCChHhhHHHHHHHHH-HHHHHHHHHHHHHhcC
Q 032199 64 KSVAAVGKA-GGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNRRQ 110 (145)
Q Consensus 64 ~~~~ei~k~-l~~~Wk~ls~~eK~~y~~~A~~-~k~~y~~e~~~y~~~~ 110 (145)
.++..+++. ||..|+.+++++++.|.+.... ...-|-..+..|..+.
T Consensus 72 ~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q~ 120 (211)
T 2qgu_A 72 ADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQT 120 (211)
T ss_dssp BCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred cCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 467777665 6899999999999999987766 5677999999998654
No 41
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=33.38 E-value=1.1e+02 Score=20.45 Aligned_cols=51 Identities=12% Similarity=0.251 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHhhHHHHHHHHHHHHHHH
Q 032199 47 VFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 100 (145)
Q Consensus 47 lF~~e~r~~vk~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~ 100 (145)
-|+.++++.+ ..++ ++..++...+-++|..+..-+=+.|.-.+...+..|.
T Consensus 28 kiLaER~kpL--~id~-l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yE 78 (106)
T 1j1d_B 28 KILAERRKVL--AIDH-LNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYE 78 (106)
T ss_dssp HHHHHHHHHH--HHTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCC--CCCC-CCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHH
Confidence 4666777655 3344 7889999999999999988888889888888877775
No 42
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=24.85 E-value=33 Score=19.46 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=6.3
Q ss_pred CCCCCccccce
Q 032199 129 DDEEGSGEVFF 139 (145)
Q Consensus 129 ~~~e~~~e~f~ 139 (145)
..+|++++|||
T Consensus 12 ~SdEDed~EfF 22 (47)
T 2rr3_B 12 MSDEDDENEFF 22 (47)
T ss_dssp SCCCCCSSCCB
T ss_pred ccccccccccc
Confidence 34444567776
No 43
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=22.01 E-value=19 Score=17.67 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=8.1
Q ss_pred CCCCCCCCHHH
Q 032199 36 NKPKRPASAFF 46 (145)
Q Consensus 36 ~~PKrP~say~ 46 (145)
.+|-.|+|||+
T Consensus 9 qppapppnafv 19 (26)
T 2lkw_A 9 QPPAPPPNAFV 19 (26)
T ss_pred cCCCcCCCeeE
Confidence 46777888875
No 44
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=20.65 E-value=39 Score=18.64 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=10.2
Q ss_pred CCCccccceecccC
Q 032199 131 EEGSGEVFFWGCFD 144 (145)
Q Consensus 131 ~e~~~e~f~~~~~~ 144 (145)
.+..++.||+||-+
T Consensus 3 ~~~~~~~~yl~CE~ 16 (39)
T 2l9z_A 3 KENMATLFTIWCTL 16 (39)
T ss_dssp CCCSCCSCSEEEGG
T ss_pred cccchhhhhhHHHH
Confidence 34567889999964
No 45
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.45 E-value=1.7e+02 Score=18.42 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCCC-----HHHHHHHHHHHhhCCChHhh-HHHH
Q 032199 50 EEFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEADK-APYV 89 (145)
Q Consensus 50 ~e~r~~vk~~~p~~~~-----~~ei~k~l~~~Wk~ls~~eK-~~y~ 89 (145)
+.+|..++.-||+ .. ..+....|.+.|..|++..+ ..|.
T Consensus 36 ~ayr~l~~~~HPD-k~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 80 (99)
T 2yua_A 36 AAYYRQCFLYHPD-RNSGSAEAAERFTRISQAYVVLGSATLRRKYD 80 (99)
T ss_dssp HHHHHHHHHSCTT-TCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHCcC-CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4556666777888 43 36788889999998886654 4443
Done!