Query 032201
Match_columns 145
No_of_seqs 89 out of 91
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 17:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w2n_P Proprotein convertase s 91.2 0.26 9E-06 35.0 4.4 60 78-144 38-98 (114)
2 3cnq_P Subtilisin BPN'; unclea 70.1 15 0.00051 23.5 5.9 52 78-144 9-60 (80)
3 2qtw_A Proprotein convertase s 53.1 52 0.0018 23.6 6.8 56 78-144 48-108 (124)
4 2etv_A Iron(III) ABC transport 49.0 23 0.0008 28.0 4.7 20 98-117 137-156 (346)
5 1k7j_A Protein YCIO, protein T 48.8 21 0.00071 27.4 4.3 37 102-143 17-54 (206)
6 1wj7_A Hypothetical protein (R 47.9 11 0.00037 27.6 2.4 28 99-126 40-68 (104)
7 3tef_A VCTP, iron(III) ABC tra 42.6 34 0.0012 25.2 4.5 28 92-119 111-138 (292)
8 2q8p_A Iron-regulated surface 41.3 17 0.00059 26.9 2.7 21 98-118 96-116 (260)
9 1jcu_A Conserved protein MTH16 40.4 23 0.0008 27.2 3.4 36 102-142 16-52 (208)
10 3md9_A Hemin-binding periplasm 40.3 21 0.00073 26.4 3.1 22 98-119 97-118 (255)
11 2r7a_A Bacterial heme binding 38.4 20 0.0007 26.5 2.7 25 93-118 94-118 (256)
12 4h59_A PIAA, iron-compound ABC 38.0 40 0.0014 24.9 4.3 20 99-118 130-149 (308)
13 3g9q_A Ferrichrome-binding pro 37.2 16 0.00056 27.4 2.0 19 100-118 106-124 (279)
14 1efd_N Ferrichrome-binding per 37.2 25 0.00086 26.1 3.1 20 99-118 105-124 (266)
15 2chu_A CEUE, enterochelin upta 36.6 22 0.00076 27.0 2.7 22 97-118 131-152 (296)
16 3gfv_A Uncharacterized ABC tra 35.5 27 0.00092 26.6 3.0 23 96-118 130-152 (303)
17 3be6_A Putative iron compound- 35.3 24 0.00083 26.5 2.7 20 98-117 123-142 (297)
18 2r79_A Periplasmic binding pro 35.2 24 0.00083 26.7 2.7 21 98-118 97-117 (283)
19 3lhs_A Ferrichrome ABC transpo 35.0 32 0.0011 25.9 3.3 25 93-118 118-142 (296)
20 2wi8_A Iron-uptake system-bind 33.9 26 0.00089 27.0 2.7 20 98-117 130-149 (311)
21 1n2z_A Vitamin B12 transport p 33.5 17 0.00059 26.8 1.6 21 98-118 94-114 (245)
22 3m21_A Probable tautomerase HP 32.0 27 0.00093 21.5 2.1 44 93-136 18-61 (67)
23 3abf_A 4-oxalocrotonate tautom 31.8 32 0.0011 20.4 2.3 41 93-134 16-57 (64)
24 3mwf_A Iron-regulated ABC tran 31.6 30 0.001 26.2 2.7 21 98-118 116-136 (298)
25 3psh_A Protein HI_1472; substr 31.6 30 0.001 26.6 2.7 22 97-118 139-160 (326)
26 4hn9_A Iron complex transport 30.9 30 0.001 27.0 2.7 22 98-119 151-172 (335)
27 3tny_A YFIY (ABC transport sys 30.5 32 0.0011 26.2 2.7 20 100-119 132-151 (303)
28 3r5t_A Ferric vibriobactin ABC 30.4 32 0.0011 26.3 2.7 20 99-118 124-143 (305)
29 4b8y_A FHUD2; transport protei 29.5 26 0.0009 26.3 2.0 18 101-118 113-130 (277)
30 2lkt_A Retinoic acid receptor 29.3 31 0.0011 24.0 2.3 22 64-85 8-29 (125)
31 3tlk_A Ferrienterobactin-bindi 28.5 36 0.0012 26.3 2.7 20 99-118 153-172 (326)
32 3mb2_A 4-oxalocrotonate tautom 28.0 39 0.0013 21.1 2.4 44 92-135 15-58 (72)
33 2oix_A Xanthomonas outer prote 25.8 74 0.0025 23.7 4.0 44 67-112 62-118 (186)
34 2x4k_A 4-oxalocrotonate tautom 25.0 48 0.0017 19.1 2.3 53 79-132 5-57 (63)
35 3m20_A 4-oxalocrotonate tautom 24.8 33 0.0011 20.9 1.6 44 91-134 12-55 (62)
36 3l7v_A Putative uncharacterize 24.4 45 0.0015 27.8 2.7 26 117-143 57-82 (295)
37 2xp1_A SPT6; transcription, IW 23.3 31 0.001 26.5 1.4 60 60-119 39-115 (178)
38 1v5i_B POIA1, IA-1=serine prot 23.1 45 0.0015 21.5 2.0 56 78-144 3-58 (76)
39 3ry0_A Putative tautomerase; o 23.0 54 0.0018 19.9 2.3 42 93-134 15-56 (65)
40 1mww_A Hypothetical protein HI 20.5 68 0.0023 21.9 2.6 45 90-135 71-116 (128)
41 2klq_A CBD, P105MCM, DNA repli 20.5 62 0.0021 23.1 2.5 29 89-117 33-61 (114)
42 1otf_A 4-oxalocrotonate tautom 20.2 74 0.0025 18.5 2.4 41 92-133 14-55 (62)
43 2qnw_A Acyl carrier protein; m 20.1 73 0.0025 19.7 2.5 21 91-111 2-22 (82)
No 1
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P
Probab=91.23 E-value=0.26 Score=35.02 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=42.1
Q ss_pred ceeEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHhcc-cceeeecceeeeeeeeCHHHHhhhhC
Q 032201 78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKN-MYAFSTTTYTGFQCTVSEETSEKFKG 144 (145)
Q Consensus 78 ~HWLVvMe~P~~~~psr~emId~Yv~TLAkVLGSEEEAKkk-IYsvSt~tyfGF~c~I~EE~S~klk~ 144 (145)
+.|+|+|+.. ++ .+.++.+.+.|+.++++ +.+.-+ +|.+. ..--||.+.++|++.++|+.
T Consensus 38 ~~YIV~lk~~----~~-~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~-~~~~GFaa~Lt~~~~~~L~~ 98 (114)
T 2w2n_P 38 GTYVVVLKEE----TH-LSQSERTARRLQAQAAR-RGYLTKILHVFH-GLLPGFLVKMSGDLLELALK 98 (114)
T ss_dssp EEEEEEECTT----CC-HHHHHHHHHHHHHHHHH-TTCCCEEEEEEC-SSSSEEEEECCGGGHHHHHT
T ss_pred CcEEEEECCC----CC-HHHHHHHHHHHHHHhhh-cccCCceEEEec-ccceEEEEEcCHHHHHHHHc
Confidence 4699999742 22 34566778888888764 223334 56664 46789999999999999875
No 2
>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B
Probab=70.06 E-value=15 Score=23.46 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=32.7
Q ss_pred ceeEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHhcccceeeecceeeeeeeeCHHHHhhhhC
Q 032201 78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKG 144 (145)
Q Consensus 78 ~HWLVvMe~P~~~~psr~emId~Yv~TLAkVLGSEEEAKkkIYsvSt~tyfGF~c~I~EE~S~klk~ 144 (145)
+.|+|++.... + .++. .+.+++-.|. +-+|.+.. --||.+.+++++.++|+.
T Consensus 9 ~~YIV~~k~~~---~-~~~~----~~~~~~~~g~-----~i~~~y~~--~~Gfaa~l~~~~~~~L~~ 60 (80)
T 3cnq_P 9 KKYIVGFKQGF---K-SCAK----KEDVISEKGG-----KLQKCFKY--VDAASATLNEKAVEELKK 60 (80)
T ss_dssp CEEEEEECTTC---C-SHHH----HHHHHHTTTC-----EEEEECSS--SSEEEEECCHHHHHHHHT
T ss_pred CCEEEEECCCC---C-hHHH----HHHHHHHcCC-----cceEEEcc--cEEEEEEcCHHHHHHHHh
Confidence 46899997432 2 2222 2344444441 22455553 789999999999999875
No 3
>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P
Probab=53.14 E-value=52 Score=23.55 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=34.9
Q ss_pred ceeEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHh-----cccceeeecceeeeeeeeCHHHHhhhhC
Q 032201 78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAK-----KNMYAFSTTTYTGFQCTVSEETSEKFKG 144 (145)
Q Consensus 78 ~HWLVvMe~P~~~~psr~emId~Yv~TLAkVLGSEEEAK-----kkIYsvSt~tyfGF~c~I~EE~S~klk~ 144 (145)
+.|+|+|... .+.+ -++..++.+..++ ++ +-.|.+. ..--||.+.+++++.++|+.
T Consensus 48 ~~YIV~~K~~----~~~~-~~~~~~~~l~~~~-----~~r~~g~~i~~~Y~-~~~~GFaa~l~~~~~~~L~~ 108 (124)
T 2qtw_A 48 GTYVVVLKEE----THLS-QSERTARRLQAQA-----ARRGYLTKILHVFH-GLLPGFLVKMSGDLLELALK 108 (124)
T ss_dssp EEEEEEECTT----CCHH-HHHHHHHHHHHHH-----HHTTCCCEEEEEEC-SSSCEEEEECCGGGHHHHHT
T ss_pred CCEEEEECCC----CCHH-HHHHHHHHHHHHH-----hhcccCCceEEEec-ccceEEEEEcCHHHHHHHHc
Confidence 3589999742 2333 3455555544321 11 2245554 46789999999999999875
No 4
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=49.01 E-value=23 Score=27.99 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCHHHHhc
Q 032201 98 IETYLNTLATVLGSMEEAKK 117 (145)
Q Consensus 98 Id~Yv~TLAkVLGSEEEAKk 117 (145)
+.--++.|+++||.||+|++
T Consensus 137 ~~~~i~~lG~~lG~e~~A~~ 156 (346)
T 2etv_A 137 LFRSIELAGXILGREERAHE 156 (346)
T ss_dssp HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 44557899999999998875
No 5
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=48.85 E-value=21 Score=27.37 Aligned_cols=37 Identities=14% Similarity=0.355 Sum_probs=27.0
Q ss_pred HHHHHHHhCCHHHHhcccceeeecceeeeeeee-CHHHHhhhh
Q 032201 102 LNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV-SEETSEKFK 143 (145)
Q Consensus 102 v~TLAkVLGSEEEAKkkIYsvSt~tyfGF~c~I-~EE~S~klk 143 (145)
++..++.| .+-.|..+.|++-||++|.. +++..++|.
T Consensus 17 i~~a~~~L-----~~G~iva~pTdtvygL~~da~n~~Av~rl~ 54 (206)
T 1k7j_A 17 INQAVEIV-----RKGGVIVYPTDSGYALGCKIEDKNAMERIC 54 (206)
T ss_dssp HHHHHHHH-----HTTCCEEEEETTEEEEEEETTCHHHHHHHH
T ss_pred HHHHHHHH-----HCCCEEEEECCCEEEEEEeCCCHHHHHHHH
Confidence 44555555 23469999999999999996 666766653
No 6
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=47.89 E-value=11 Score=27.64 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhC-CHHHHhcccceeeecc
Q 032201 99 ETYLNTLATVLG-SMEEAKKNMYAFSTTT 126 (145)
Q Consensus 99 d~Yv~TLAkVLG-SEEEAKkkIYsvSt~t 126 (145)
+--|+.|+..-| +||+|+..++.+.|+-
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl 68 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDV 68 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCH
Confidence 556789999888 9999999999988854
No 7
>3tef_A VCTP, iron(III) ABC transporter, periplasmic iron-compo binding protein; siderophore-binding protein, transport protein; 1.70A {Vibrio cholerae}
Probab=42.56 E-value=34 Score=25.22 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHHHhCCHHHHhccc
Q 032201 92 PTREQMIETYLNTLATVLGSMEEAKKNM 119 (145)
Q Consensus 92 psr~emId~Yv~TLAkVLGSEEEAKkkI 119 (145)
...-+-+.-.++.|++++|.+++|++-|
T Consensus 111 ~~~~~~~~~~~~~lg~~~g~~~~A~~~~ 138 (292)
T 3tef_A 111 QGYWESTQQQWRNLGKVFAIEPAVEAKI 138 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhHhhhHHHHHHHHH
Confidence 3344556667889999999999998643
No 8
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=41.28 E-value=17 Score=26.87 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhCCHHHHhcc
Q 032201 98 IETYLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 98 Id~Yv~TLAkVLGSEEEAKkk 118 (145)
+.-.++.||++||.+++|++-
T Consensus 96 ~~~~i~~lg~~~g~~~~A~~~ 116 (260)
T 2q8p_A 96 MQKSITQLGDQFNRKAQAKEL 116 (260)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHH
Confidence 445578899999999988754
No 9
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1
Probab=40.42 E-value=23 Score=27.18 Aligned_cols=36 Identities=17% Similarity=0.343 Sum_probs=26.4
Q ss_pred HHHHHHHhCCHHHHhcccceeeecceeeeeeee-CHHHHhhh
Q 032201 102 LNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV-SEETSEKF 142 (145)
Q Consensus 102 v~TLAkVLGSEEEAKkkIYsvSt~tyfGF~c~I-~EE~S~kl 142 (145)
++..++.| .+-.|-.+.|++-||++|.. +++..++|
T Consensus 16 i~~a~~~L-----~~G~vVa~pTdtvygL~~da~n~~Av~rl 52 (208)
T 1jcu_A 16 LEEAISVM-----EGGGIVIYPTDTIYGLGVNALDEDAVRRL 52 (208)
T ss_dssp HHHHHHHH-----HTTCEEECCCSSSCEEEEETTSHHHHHHH
T ss_pred HHHHHHHH-----HCCCEEEEECCCEEEEEEeCCCHHHHHHH
Confidence 34455555 23469999999999999997 66666665
No 10
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=40.27 E-value=21 Score=26.38 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCHHHHhccc
Q 032201 98 IETYLNTLATVLGSMEEAKKNM 119 (145)
Q Consensus 98 Id~Yv~TLAkVLGSEEEAKkkI 119 (145)
+.-.++.||++||.+++|++-|
T Consensus 97 ~~~~i~~lg~~~g~~~~A~~l~ 118 (255)
T 3md9_A 97 VAMKINAVATALHQTEKGQKLI 118 (255)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 4567899999999999997543
No 11
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=38.39 E-value=20 Score=26.49 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHHhCCHHHHhcc
Q 032201 93 TREQMIETYLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 93 sr~emId~Yv~TLAkVLGSEEEAKkk 118 (145)
+-++ +.-.++.|+++||.+++|++-
T Consensus 94 ~~~~-~~~~i~~lg~~~g~~~~A~~~ 118 (256)
T 2r7a_A 94 TLEQ-MYANIRQLAKTLQVPEQGDAL 118 (256)
T ss_dssp CHHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHH-HHHHHHHHHHHhCCHHHHHHH
Confidence 3444 444678999999999988754
No 12
>4h59_A PIAA, iron-compound ABC transporter, iron compound-BIND protein; center for structural genomics of infectious diseases; HET: MSE B3P; 1.66A {Streptococcus pneumoniae}
Probab=38.04 E-value=40 Score=24.93 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCHHHHhcc
Q 032201 99 ETYLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 99 d~Yv~TLAkVLGSEEEAKkk 118 (145)
.-.++.|+++||.+++|++-
T Consensus 130 ~~~i~~lg~~~g~~~~A~~~ 149 (308)
T 4h59_A 130 RDMIKIDSKALGMEKEGDEL 149 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHH
Confidence 34578899999999998754
No 13
>3g9q_A Ferrichrome-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.60A {Bacillus subtilis subsp} PDB: 3hxp_A
Probab=37.21 E-value=16 Score=27.38 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCHHHHhcc
Q 032201 100 TYLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 100 ~Yv~TLAkVLGSEEEAKkk 118 (145)
--++.||++||.+++|++-
T Consensus 106 ~~i~~lg~~~g~e~~A~~l 124 (279)
T 3g9q_A 106 EQLKEFAKMTGTEDKAEKW 124 (279)
T ss_dssp HHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHH
Confidence 4578999999999988653
No 14
>1efd_N Ferrichrome-binding periplasmic protein; periplasmic binding protein-siderophore complex, FHUD complex with gallichrome; HET: GCR; 1.90A {Escherichia coli} SCOP: c.92.2.1 PDB: 1k7s_N* 1k2v_N* 1esz_A*
Probab=37.19 E-value=25 Score=26.14 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhCCHHHHhcc
Q 032201 99 ETYLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 99 d~Yv~TLAkVLGSEEEAKkk 118 (145)
.--+++|+++||.+++|++-
T Consensus 105 ~~~i~~lg~~~g~~~~A~~~ 124 (266)
T 1efd_N 105 RKSLTEMADLLNLQSAAETH 124 (266)
T ss_dssp HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHH
Confidence 34578999999999988753
No 15
>2chu_A CEUE, enterochelin uptake periplasmic binding protein; iron, mecam, SELF assembly, siderophore; HET: ECA; 2.40A {Campylobacter jejuni} SCOP: c.92.2.4
Probab=36.62 E-value=22 Score=27.05 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhCCHHHHhcc
Q 032201 97 MIETYLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 97 mId~Yv~TLAkVLGSEEEAKkk 118 (145)
=+.--++.|+++||.+|+|++-
T Consensus 131 ~~~~~i~~lg~~~g~~~~A~~l 152 (296)
T 2chu_A 131 SFENNVLSVAKLYGLEKEALEK 152 (296)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHH
Confidence 3455688999999999998753
No 16
>3gfv_A Uncharacterized ABC transporter solute-binding protein YCLQ; alpha-beta-sandwich, periplasmic binding protein fold (PBP fold); 1.75A {Bacillus subtilis subsp}
Probab=35.47 E-value=27 Score=26.60 Aligned_cols=23 Identities=9% Similarity=0.273 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHhcc
Q 032201 96 QMIETYLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 96 emId~Yv~TLAkVLGSEEEAKkk 118 (145)
+-+.-.+++|+++||-+++|++-
T Consensus 130 ~~~~~~i~~lg~~~g~~~~A~~l 152 (303)
T 3gfv_A 130 ESFKSDAETIGKIFDKEDKVKDE 152 (303)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChHHHHHH
Confidence 33456689999999999988653
No 17
>3be6_A Putative iron compound-binding protein of ABC TRA family; open form, closed form, group III periplasmic binding protei structural genomics; HET: MSE; 1.82A {Escherichia coli O157} PDB: 3be5_A*
Probab=35.29 E-value=24 Score=26.50 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhCCHHHHhc
Q 032201 98 IETYLNTLATVLGSMEEAKK 117 (145)
Q Consensus 98 Id~Yv~TLAkVLGSEEEAKk 117 (145)
+.--++.|+++||.+++|++
T Consensus 123 ~~~~~~~lg~~~g~~~~A~~ 142 (297)
T 3be6_A 123 APEIYRKLAELTGTQSQLAI 142 (297)
T ss_dssp HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHH
Confidence 34457889999999998874
No 18
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=35.21 E-value=24 Score=26.74 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCHHHHhcc
Q 032201 98 IETYLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 98 Id~Yv~TLAkVLGSEEEAKkk 118 (145)
+.--++.||++||.+++|++-
T Consensus 97 ~~~~i~~lg~~~g~~~~A~~l 117 (283)
T 2r79_A 97 LESNLKKLGDWLGVPQRAEAA 117 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHH
Confidence 445578899999999888753
No 19
>3lhs_A Ferrichrome ABC transporter lipoprotein; siderophore, iron, receptor, binding protein, T protein; HET: SF8; 1.30A {Staphylococcus aureus subsp} PDB: 3eiw_A 3eix_A* 3li2_A*
Probab=34.95 E-value=32 Score=25.95 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHHhCCHHHHhcc
Q 032201 93 TREQMIETYLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 93 sr~emId~Yv~TLAkVLGSEEEAKkk 118 (145)
+.+++. --++.|+++||-+++|++-
T Consensus 118 ~~~~~~-~~i~~lg~~~g~~~~A~~~ 142 (296)
T 3lhs_A 118 DYKQNI-NSFKTIAKALNKEKEGEKR 142 (296)
T ss_dssp CHHHHH-HHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHH-HHHHHHHHHhCCHHHHHHH
Confidence 566665 4677999999999998643
No 20
>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin binding, triscatecholate BIND protein, iron transport; 1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A* 2phz_A
Probab=33.86 E-value=26 Score=27.04 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhCCHHHHhc
Q 032201 98 IETYLNTLATVLGSMEEAKK 117 (145)
Q Consensus 98 Id~Yv~TLAkVLGSEEEAKk 117 (145)
+.--++.|+++||.+|+|++
T Consensus 130 ~~~~i~~lg~~lg~e~~A~~ 149 (311)
T 2wi8_A 130 WKENMMLLAQLTGKEKKAKK 149 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 34557899999999998875
No 21
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=33.54 E-value=17 Score=26.80 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhCCHHHHhcc
Q 032201 98 IETYLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 98 Id~Yv~TLAkVLGSEEEAKkk 118 (145)
+.--++.||++||.+++|++-
T Consensus 94 ~~~~i~~lg~~lg~~~~A~~~ 114 (245)
T 1n2z_A 94 IANALRQLAPWSPQPDKAEQA 114 (245)
T ss_dssp HHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHH
Confidence 455578899999999888754
No 22
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=31.99 E-value=27 Score=21.50 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHhCCHHHHhcccceeeecceeeeeeeeCH
Q 032201 93 TREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSE 136 (145)
Q Consensus 93 sr~emId~Yv~TLAkVLGSEEEAKkkIYsvSt~tyfGF~c~I~E 136 (145)
.|+++++...+.|+++||-..|.-.-+..---...||||-..-.
T Consensus 18 qK~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~~~ 61 (67)
T 3m21_A 18 QKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVH 61 (67)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEECCTTTEEETTEEHH
T ss_pred HHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCEEHH
Confidence 46788888899999999966555555444334467888765433
No 23
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=31.76 E-value=32 Score=20.41 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHHhCCHHHHhcc-cceeeecceeeeeeee
Q 032201 93 TREQMIETYLNTLATVLGSMEEAKKN-MYAFSTTTYTGFQCTV 134 (145)
Q Consensus 93 sr~emId~Yv~TLAkVLGSEEEAKkk-IYsvSt~tyfGF~c~I 134 (145)
.+++++....+.|+++||-.++.=+- |..+. ...+||+-..
T Consensus 16 qk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~-~~~w~~gG~~ 57 (64)
T 3abf_A 16 KKRELVRRLTEMASRLLGEPYEEVRVILYEVR-RDQWAAGGVL 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEEC-GGGEEETTEE
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEEEEEcC-HHHeeECCEE
Confidence 46678888889999999955544333 33333 3557776543
No 24
>3mwf_A Iron-regulated ABC transporter siderophore-bindin SIRA; ABC transporter binding protein, transport protein; HET: SE8; 1.70A {Staphylococcus aureus subsp} PDB: 3mwg_A
Probab=31.60 E-value=30 Score=26.16 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCHHHHhcc
Q 032201 98 IETYLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 98 Id~Yv~TLAkVLGSEEEAKkk 118 (145)
+.-.++.|+++||.+++|++-
T Consensus 116 ~~~~i~~lg~~~g~~~~A~~l 136 (298)
T 3mwf_A 116 FKDTTKLMGKALGKEKEAEDL 136 (298)
T ss_dssp HHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHH
Confidence 445678899999999888653
No 25
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=31.56 E-value=30 Score=26.64 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhCCHHHHhcc
Q 032201 97 MIETYLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 97 mId~Yv~TLAkVLGSEEEAKkk 118 (145)
-+.--++.|+++||.+++|++-
T Consensus 139 ~~~~~i~~lg~~lg~e~~A~~l 160 (326)
T 3psh_A 139 GLKQGIELIAEVFEKKQQGDEL 160 (326)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHH
Confidence 3456789999999999998754
No 26
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=30.85 E-value=30 Score=27.02 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCCHHHHhccc
Q 032201 98 IETYLNTLATVLGSMEEAKKNM 119 (145)
Q Consensus 98 Id~Yv~TLAkVLGSEEEAKkkI 119 (145)
+.-.++.|+++||.|++|++-|
T Consensus 151 ~~~~i~~lg~~lg~e~~A~~li 172 (335)
T 4hn9_A 151 LEECITLVGKITNNAGRAEALN 172 (335)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4567889999999999987543
No 27
>3tny_A YFIY (ABC transport system substrate-binding PROT; schizokinen, nutrient binding protein, ABC transporter, metal transport; HET: SKZ; 1.55A {Bacillus cereus}
Probab=30.50 E-value=32 Score=26.18 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCHHHHhccc
Q 032201 100 TYLNTLATVLGSMEEAKKNM 119 (145)
Q Consensus 100 ~Yv~TLAkVLGSEEEAKkkI 119 (145)
-.++.|+++||-+++|++-|
T Consensus 132 ~~i~~lg~~~g~e~~A~~li 151 (303)
T 3tny_A 132 DNFKFYAKALNKEKEGQKVV 151 (303)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHH
Confidence 35789999999999997654
No 28
>3r5t_A Ferric vibriobactin ABC transporter, periplasmic vibriobactin-binding protein; iron-vibriobactin transport protein; HET: VBN; 1.45A {Vibrio cholerae} PDB: 3r5s_A*
Probab=30.36 E-value=32 Score=26.34 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCHHHHhcc
Q 032201 99 ETYLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 99 d~Yv~TLAkVLGSEEEAKkk 118 (145)
.-.++.|+++||.+++|++-
T Consensus 124 ~~~i~~lg~~lg~~~~A~~l 143 (305)
T 3r5t_A 124 QSLAQQLGLATGLEEQAERT 143 (305)
T ss_dssp HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHH
Confidence 34589999999999998754
No 29
>4b8y_A FHUD2; transport protein-siderophore complex, transport protein, VA siderophore, class III solute binding, inhibitor protein (S; HET: AHO; 1.90A {Staphylococcus aureus subsp}
Probab=29.46 E-value=26 Score=26.30 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCHHHHhcc
Q 032201 101 YLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 101 Yv~TLAkVLGSEEEAKkk 118 (145)
-++.||++||.+++|++-
T Consensus 113 ~~~~lg~~~g~~~~A~~~ 130 (277)
T 4b8y_A 113 QQEMLGKIVGKEDKVKAW 130 (277)
T ss_dssp HHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHH
Confidence 359999999999988653
No 30
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=29.34 E-value=31 Score=24.04 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=17.8
Q ss_pred CCCCcccccCCCCCceeEEEEc
Q 032201 64 NEPRETIMLPGCDYNHWLIVME 85 (145)
Q Consensus 64 ~~~~~tiLf~GcDy~HWLVvMe 85 (145)
..+.+-|-++...|.||=|+..
T Consensus 8 p~pGDlI~~~r~~Y~H~gIYvG 29 (125)
T 2lkt_A 8 PKPGDLIEIFRLGYEHWALYIG 29 (125)
T ss_dssp CCTTCEEEEECSSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCccEEEEEeC
Confidence 3456788888899999999765
No 31
>3tlk_A Ferrienterobactin-binding periplasmic protein; ferric-enterobactin, trimer, siderophore transport, periplas space, metal transport; HET: EB4; 1.85A {Escherichia coli}
Probab=28.49 E-value=36 Score=26.33 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCHHHHhcc
Q 032201 99 ETYLNTLATVLGSMEEAKKN 118 (145)
Q Consensus 99 d~Yv~TLAkVLGSEEEAKkk 118 (145)
.--++.|+++||.+++|++-
T Consensus 153 ~~~i~~lg~~lg~~~~A~~l 172 (326)
T 3tlk_A 153 QSLLTQLGEITGHEKQAAER 172 (326)
T ss_dssp HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHH
Confidence 34589999999999998754
No 32
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=27.98 E-value=39 Score=21.13 Aligned_cols=44 Identities=5% Similarity=-0.091 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHHHhCCHHHHhcccceeeecceeeeeeeeC
Q 032201 92 PTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVS 135 (145)
Q Consensus 92 psr~emId~Yv~TLAkVLGSEEEAKkkIYsvSt~tyfGF~c~I~ 135 (145)
-.|+++++...+.++++||-.+|.-.-+..=--...||||-..-
T Consensus 15 eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~~ 58 (72)
T 3mb2_A 15 EQKAELARALSAAAAAAFDVPLAEVRLIIQEVPPTHWTVGGISM 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGEEETTEET
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEEH
Confidence 35678889999999999996655555444433336778875543
No 33
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=25.77 E-value=74 Score=23.66 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=30.0
Q ss_pred CcccccCCCC-Ccee-EEEEcCCCCCC-----------CCHHHHHHHHHHHHHHHhCCH
Q 032201 67 RETIMLPGCD-YNHW-LIVMEFPKDPA-----------PTREQMIETYLNTLATVLGSM 112 (145)
Q Consensus 67 ~~tiLf~GcD-y~HW-LVvMe~P~~~~-----------psr~emId~Yv~TLAkVLGSE 112 (145)
++.|++|=++ ..|| |+|+|.+.... ..+. ....++.|.+.||.+
T Consensus 62 ~~~i~iPin~~~~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~--~~~l~~~l~~~l~~~ 118 (186)
T 2oix_A 62 PPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQ--QRYLADMAAYHLGLD 118 (186)
T ss_dssp CSEEEEEEEETTTEEEEEEEECSSTTSCEEEEECCCSSCCHH--HHHHHHHHHHHTTCC
T ss_pred cCEEEEEEeCCCCccEEEEEECCCCeeeeeEEEcCCCCCCHH--HHHHHHHHHHHhCCC
Confidence 8899999887 6899 56777775322 2222 344567788888854
No 34
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=24.95 E-value=48 Score=19.11 Aligned_cols=53 Identities=6% Similarity=0.003 Sum_probs=30.7
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHhcccceeeecceeeeee
Q 032201 79 HWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQC 132 (145)
Q Consensus 79 HWLVvMe~P~~~~psr~emId~Yv~TLAkVLGSEEEAKkkIYsvSt~tyfGF~c 132 (145)
|+-|.+-... ..-.++++++.-.+.|+++||-.++.-.-++.---...|||+-
T Consensus 5 ~i~i~~~~g~-s~e~k~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~~~~~~~~G 57 (63)
T 2x4k_A 5 IVNVKLLEGR-SDEQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMKPNHYGVAG 57 (63)
T ss_dssp EEEEEEESCC-CHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETT
T ss_pred EEEEEEcCCC-CHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECC
Confidence 4445443321 2334678899999999999996555443333322235566654
No 35
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=24.81 E-value=33 Score=20.91 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHhcccceeeecceeeeeeee
Q 032201 91 APTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV 134 (145)
Q Consensus 91 ~psr~emId~Yv~TLAkVLGSEEEAKkkIYsvSt~tyfGF~c~I 134 (145)
.-.|+++++.-.+.++++||-..|.-.-+..=--...||||-..
T Consensus 12 ~eqK~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~~~w~~gG~~ 55 (62)
T 3m20_A 12 VGKKREFVERLTSVAAEIYGMDRSAITILIHEPPAENVGVGGKL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCEEEEECCCGGGEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCHHHeEECCEE
Confidence 33577888888999999999555544443332333677877543
No 36
>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A {Streptococcus mutans}
Probab=24.37 E-value=45 Score=27.75 Aligned_cols=26 Identities=8% Similarity=-0.125 Sum_probs=22.9
Q ss_pred cccceeeecceeeeeeeeCHHHHhhhh
Q 032201 117 KNMYAFSTTTYTGFQCTVSEETSEKFK 143 (145)
Q Consensus 117 kkIYsvSt~tyfGF~c~I~EE~S~klk 143 (145)
-.|-.+.|++-||++| .+++..++|.
T Consensus 57 GgIVa~PTdTvYGL~c-~n~~AV~rL~ 82 (295)
T 3l7v_A 57 GGVIVCPTKVGYIIMT-SDKKGLERKF 82 (295)
T ss_dssp TCEEEEEETTEEEEEE-SSHHHHHHHH
T ss_pred CCEEEEECCCEEEEEE-cCHHHHHHHH
Confidence 4599999999999999 9999888764
No 37
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=23.27 E-value=31 Score=26.51 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=36.9
Q ss_pred CCCCCCCCccccc--CCCCCceeEEEEcCCC-----CCCCCHHHHHHHHHHHHHHHhC----------CHHHHhccc
Q 032201 60 RSSSNEPRETIML--PGCDYNHWLIVMEFPK-----DPAPTREQMIETYLNTLATVLG----------SMEEAKKNM 119 (145)
Q Consensus 60 ~~s~~~~~~tiLf--~GcDy~HWLVvMe~P~-----~~~psr~emId~Yv~TLAkVLG----------SEEEAKkkI 119 (145)
|+|+++..-++-+ ...-|.|+-|.=+--. ..--+-+|+|..|++.|++-|. +.|||.+-|
T Consensus 39 RPSsk~~~ltit~Kv~d~~~~Hi~I~E~~k~l~ig~~~fedLDElI~~yv~pm~~~~~~~~~h~kf~~s~~~~e~~L 115 (178)
T 2xp1_A 39 RKGSRHGYCVLVIKFASDVFVHMKIEEHSEHYTCSNKHFEDIDEVISVYVRPILRNLKSIKAHAKYFNSPEDAEKLL 115 (178)
T ss_dssp EECSSTTEEEEEEEEETTEEEEEEEEECSSCEEETTEEESSHHHHHHHTHHHHHHHHHHHHHSTTBCSCTTTSHHHH
T ss_pred eecCCCCcEEEEEEECCCcEEEEEEEECCCEEEECCcEECCHHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHH
Confidence 3444544334433 3344788877543211 1245889999999999998876 666665443
No 38
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=23.15 E-value=45 Score=21.50 Aligned_cols=56 Identities=16% Similarity=0.354 Sum_probs=32.5
Q ss_pred ceeEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHhcccceeeecceeeeeeeeCHHHHhhhhC
Q 032201 78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKG 144 (145)
Q Consensus 78 ~HWLVvMe~P~~~~psr~emId~Yv~TLAkVLGSEEEAKkkIYsvSt~tyfGF~c~I~EE~S~klk~ 144 (145)
+-++|+|.. ..+.+ .++...+.+...=|. -..-|+ ...--||.+.++|++.++|+.
T Consensus 3 ~sYIV~lk~----~~~~~-~~~~~~~~~~~~gg~----i~~~y~--~~~~~Gfa~~~~~~~l~~l~~ 58 (76)
T 1v5i_B 3 GKFIVIFKN----DVSED-KIRETKDEVIAEGGT----ITNEYN--MPGMKGFAGELTPQSLTKFQG 58 (76)
T ss_dssp EEEEEEECT----TCCHH-HHHHHHHHHHHHTCC----CCEEEE--ETTEEEEEEEECHHHHHHHHH
T ss_pred ceEEEEECC----CCCHH-HHHHHHHHHHhhCCc----eEEEEE--cCceeEEEEEcCHHHHHHHHh
Confidence 457888842 23333 355555544432221 011332 335689999999999998863
No 39
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=22.98 E-value=54 Score=19.91 Aligned_cols=42 Identities=12% Similarity=-0.043 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHhCCHHHHhcccceeeecceeeeeeee
Q 032201 93 TREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV 134 (145)
Q Consensus 93 sr~emId~Yv~TLAkVLGSEEEAKkkIYsvSt~tyfGF~c~I 134 (145)
.|+++++...+.+.++||-.++.-.-+..=--...||||=..
T Consensus 15 qk~~L~~~it~~~~~~lg~p~~~v~V~i~e~~~~~w~~gG~~ 56 (65)
T 3ry0_A 15 EVAALGEALTAAAHETLGTPVEAVRVIVEETPPERWFVGGRS 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEE
Confidence 577899999999999999655554444433333667776543
No 40
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=20.51 E-value=68 Score=21.90 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCHHHH-hcccceeeecceeeeeeeeC
Q 032201 90 PAPTREQMIETYLNTLATVLGSMEEA-KKNMYAFSTTTYTGFQCTVS 135 (145)
Q Consensus 90 ~~psr~emId~Yv~TLAkVLGSEEEA-KkkIYsvSt~tyfGF~c~I~ 135 (145)
..-.|++++..-.+.|++.||-..|. --.|..+.- ..||||-..-
T Consensus 71 t~eqK~~l~~~l~~~l~~~lg~~~~~v~V~i~e~~~-~~wg~gG~~~ 116 (128)
T 1mww_A 71 MEGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQPA-HCWGFRGMTG 116 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECG-GGEEETTEET
T ss_pred CHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEECCH-HHeeECCEEH
Confidence 34456678888888899999944333 333555554 6788876553
No 41
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=20.46 E-value=62 Score=23.10 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCHHHHhc
Q 032201 89 DPAPTREQMIETYLNTLATVLGSMEEAKK 117 (145)
Q Consensus 89 ~~~psr~emId~Yv~TLAkVLGSEEEAKk 117 (145)
+...+++|.|+-|++....-+-||||...
T Consensus 33 ~~G~~~~eLv~WYLeq~e~~i~seeel~~ 61 (114)
T 2klq_A 33 ESALKRSELVNWYLKEIESEIDSEEELIN 61 (114)
T ss_dssp SSCBCHHHHHHHHHHHHTTTCCSHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 36789999999999998888889999743
No 42
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=20.23 E-value=74 Score=18.51 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHhCCHHHHhcc-cceeeecceeeeeee
Q 032201 92 PTREQMIETYLNTLATVLGSMEEAKKN-MYAFSTTTYTGFQCT 133 (145)
Q Consensus 92 psr~emId~Yv~TLAkVLGSEEEAKkk-IYsvSt~tyfGF~c~ 133 (145)
-.++++++.-.+.|.++||-..+.-.- |..+. ...|||+-.
T Consensus 14 e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~~-~~~w~~~G~ 55 (62)
T 1otf_A 14 EQKETLIRQVSEAMANSLDAPLERVRVLITEMP-KNHFGIGGE 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEC-GGGEEETTE
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeC-HHHeEECCE
Confidence 356678888888899999955543333 33343 356677643
No 43
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=20.14 E-value=73 Score=19.74 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHHHHhCC
Q 032201 91 APTREQMIETYLNTLATVLGS 111 (145)
Q Consensus 91 ~psr~emId~Yv~TLAkVLGS 111 (145)
-++++++.+...+.+++++|-
T Consensus 2 ~~~~~~i~~~l~~ii~~~l~~ 22 (82)
T 2qnw_A 2 SSDDRPLLERVKDVVADQLGV 22 (82)
T ss_dssp -CCSHHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHHHHHHHHHCC
Confidence 478899999999999999984
Done!